Multiple sequence alignment - TraesCS7B01G338200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G338200 chr7B 100.000 3138 0 0 1 3138 592626672 592623535 0.000000e+00 5795.0
1 TraesCS7B01G338200 chr7B 83.633 501 63 15 16 512 401562546 401562061 1.330000e-123 453.0
2 TraesCS7B01G338200 chr7B 88.693 283 30 2 2212 2492 592676548 592676266 8.330000e-91 344.0
3 TraesCS7B01G338200 chr7B 89.231 65 7 0 1881 1945 592624756 592624692 7.210000e-12 82.4
4 TraesCS7B01G338200 chr7B 89.231 65 7 0 1917 1981 592624792 592624728 7.210000e-12 82.4
5 TraesCS7B01G338200 chr7D 92.003 1288 61 15 1881 3138 549122314 549121039 0.000000e+00 1770.0
6 TraesCS7B01G338200 chr7D 95.766 496 16 3 693 1184 549123491 549122997 0.000000e+00 795.0
7 TraesCS7B01G338200 chr7D 84.595 766 47 33 1205 1945 549122933 549122214 0.000000e+00 695.0
8 TraesCS7B01G338200 chr7D 81.520 579 86 15 1 571 16273793 16274358 1.030000e-124 457.0
9 TraesCS7B01G338200 chr7D 91.753 97 8 0 574 670 549123567 549123471 5.460000e-28 135.0
10 TraesCS7B01G338200 chr7A 85.631 1545 98 47 1205 2696 634438942 634437469 0.000000e+00 1509.0
11 TraesCS7B01G338200 chr7A 92.570 498 16 7 693 1184 634439490 634439008 0.000000e+00 695.0
12 TraesCS7B01G338200 chr7A 80.961 583 80 24 1 571 125106021 125106584 1.730000e-117 433.0
13 TraesCS7B01G338200 chr7A 88.581 289 24 6 2853 3138 634437334 634437052 3.000000e-90 342.0
14 TraesCS7B01G338200 chr7A 93.814 97 6 0 574 670 634439566 634439470 2.520000e-31 147.0
15 TraesCS7B01G338200 chr1B 82.007 578 87 16 4 571 637903430 637902860 2.830000e-130 475.0
16 TraesCS7B01G338200 chr5D 82.092 564 84 14 16 571 540828737 540828183 1.700000e-127 466.0
17 TraesCS7B01G338200 chr5D 92.857 98 6 1 2700 2796 111788741 111788644 1.170000e-29 141.0
18 TraesCS7B01G338200 chr4D 81.174 579 87 16 2 571 474937875 474938440 2.220000e-121 446.0
19 TraesCS7B01G338200 chr4D 94.565 92 5 0 2712 2803 371926898 371926807 3.260000e-30 143.0
20 TraesCS7B01G338200 chr1D 80.035 566 93 16 16 570 140112211 140111655 4.870000e-108 401.0
21 TraesCS7B01G338200 chr6B 81.616 495 69 17 11 497 635164983 635165463 1.060000e-104 390.0
22 TraesCS7B01G338200 chr2A 79.249 559 93 18 16 570 173414535 173415074 4.940000e-98 368.0
23 TraesCS7B01G338200 chr2A 93.333 45 2 1 478 521 58667918 58667874 7.260000e-07 65.8
24 TraesCS7B01G338200 chr4B 92.708 96 7 0 2709 2804 23660871 23660776 4.220000e-29 139.0
25 TraesCS7B01G338200 chr2D 93.617 94 5 1 2707 2799 619321099 619321006 4.220000e-29 139.0
26 TraesCS7B01G338200 chr5B 91.753 97 8 0 2710 2806 504177845 504177749 5.460000e-28 135.0
27 TraesCS7B01G338200 chr3B 92.553 94 7 0 2708 2801 526495805 526495898 5.460000e-28 135.0
28 TraesCS7B01G338200 chr2B 91.919 99 4 4 2708 2804 656221836 656221932 5.460000e-28 135.0
29 TraesCS7B01G338200 chr3D 90.909 99 9 0 2710 2808 608805122 608805024 1.960000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G338200 chr7B 592623535 592626672 3137 True 1986.60 5795 92.820667 1 3138 3 chr7B.!!$R3 3137
1 TraesCS7B01G338200 chr7D 549121039 549123567 2528 True 848.75 1770 91.029250 574 3138 4 chr7D.!!$R1 2564
2 TraesCS7B01G338200 chr7D 16273793 16274358 565 False 457.00 457 81.520000 1 571 1 chr7D.!!$F1 570
3 TraesCS7B01G338200 chr7A 634437052 634439566 2514 True 673.25 1509 90.149000 574 3138 4 chr7A.!!$R1 2564
4 TraesCS7B01G338200 chr7A 125106021 125106584 563 False 433.00 433 80.961000 1 571 1 chr7A.!!$F1 570
5 TraesCS7B01G338200 chr1B 637902860 637903430 570 True 475.00 475 82.007000 4 571 1 chr1B.!!$R1 567
6 TraesCS7B01G338200 chr5D 540828183 540828737 554 True 466.00 466 82.092000 16 571 1 chr5D.!!$R2 555
7 TraesCS7B01G338200 chr4D 474937875 474938440 565 False 446.00 446 81.174000 2 571 1 chr4D.!!$F1 569
8 TraesCS7B01G338200 chr1D 140111655 140112211 556 True 401.00 401 80.035000 16 570 1 chr1D.!!$R1 554
9 TraesCS7B01G338200 chr2A 173414535 173415074 539 False 368.00 368 79.249000 16 570 1 chr2A.!!$F1 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
695 721 0.260816 TCGTGGGCCTAGAGTATGGT 59.739 55.0 4.53 0.0 0.0 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2588 2722 0.179029 GCACACCACCACCTTGTAGT 60.179 55.0 0.0 0.0 0.0 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.063997 CACGAGAGACACAGTTTTGCTTT 59.936 43.478 0.00 0.00 0.00 3.51
25 26 3.557595 CGAGAGACACAGTTTTGCTTTCT 59.442 43.478 0.00 0.00 0.00 2.52
32 33 3.804325 CACAGTTTTGCTTTCTCGAGAGA 59.196 43.478 15.94 10.59 39.12 3.10
130 138 1.452145 GAGGCACGGTTTTGCTTCCA 61.452 55.000 0.00 0.00 41.54 3.53
133 141 1.657181 CACGGTTTTGCTTCCACGC 60.657 57.895 0.00 0.00 0.00 5.34
246 259 1.790387 CTTTGCTTTCGCGAGAGGG 59.210 57.895 25.84 11.23 43.69 4.30
276 289 4.382386 TCCTCTTTCGGAAAGGGAAAAT 57.618 40.909 27.71 0.00 41.66 1.82
296 309 3.691342 CCGTGCTCCCGGTTCAGA 61.691 66.667 0.00 0.00 43.07 3.27
387 404 3.634397 TCTTGAAGCGAGGAATCCAAT 57.366 42.857 0.61 0.00 0.00 3.16
396 413 3.428045 GCGAGGAATCCAATGGTGAAAAG 60.428 47.826 0.61 0.00 0.00 2.27
398 415 4.344104 GAGGAATCCAATGGTGAAAAGGA 58.656 43.478 0.61 0.00 0.00 3.36
415 432 2.893637 AGGATTCGAGATTTGGACACG 58.106 47.619 0.00 0.00 0.00 4.49
424 441 2.879646 AGATTTGGACACGCGGTTTAAA 59.120 40.909 12.47 10.99 0.00 1.52
426 443 3.498927 TTTGGACACGCGGTTTAAAAA 57.501 38.095 12.47 0.77 0.00 1.94
485 504 2.039084 AGGAAAACTCTCAGGTTGCGAT 59.961 45.455 0.00 0.00 0.00 4.58
514 539 4.978863 TGCAGCGCGCCACTTGTA 62.979 61.111 30.33 16.56 41.33 2.41
547 573 9.093458 AGGAAAATTGGAAGTGATCTTTGTAAT 57.907 29.630 0.00 0.00 33.64 1.89
556 582 8.035394 GGAAGTGATCTTTGTAATGAGTACTCA 58.965 37.037 27.07 27.07 37.76 3.41
608 634 1.008538 CAAACAAAGCGCGCTTCCT 60.009 52.632 42.82 28.12 34.84 3.36
615 641 2.827383 AAGCGCGCTTCCTCTCTCAC 62.827 60.000 38.88 1.41 0.00 3.51
619 645 0.457681 GCGCTTCCTCTCTCACAGTC 60.458 60.000 0.00 0.00 0.00 3.51
650 676 1.307430 TATGGTGGGCTGTGGGCTA 60.307 57.895 0.00 0.00 41.46 3.93
664 690 4.752879 GCTAGTGGCGCGGTGGAA 62.753 66.667 8.83 0.00 0.00 3.53
665 691 2.813908 CTAGTGGCGCGGTGGAAC 60.814 66.667 8.83 0.00 0.00 3.62
666 692 3.296709 CTAGTGGCGCGGTGGAACT 62.297 63.158 8.83 0.48 36.74 3.01
667 693 2.781595 CTAGTGGCGCGGTGGAACTT 62.782 60.000 8.83 0.00 36.74 2.66
668 694 4.025401 GTGGCGCGGTGGAACTTG 62.025 66.667 8.83 0.00 36.74 3.16
669 695 4.243008 TGGCGCGGTGGAACTTGA 62.243 61.111 8.83 0.00 36.74 3.02
670 696 2.975799 GGCGCGGTGGAACTTGAA 60.976 61.111 8.83 0.00 36.74 2.69
671 697 2.251371 GCGCGGTGGAACTTGAAC 59.749 61.111 8.83 0.00 36.74 3.18
672 698 2.539338 GCGCGGTGGAACTTGAACA 61.539 57.895 8.83 0.00 36.74 3.18
673 699 1.278637 CGCGGTGGAACTTGAACAC 59.721 57.895 0.00 0.00 36.74 3.32
674 700 1.433053 CGCGGTGGAACTTGAACACA 61.433 55.000 0.00 0.00 36.87 3.72
675 701 0.307760 GCGGTGGAACTTGAACACAG 59.692 55.000 0.00 0.00 36.87 3.66
676 702 1.663695 CGGTGGAACTTGAACACAGT 58.336 50.000 0.00 0.00 36.87 3.55
677 703 1.597663 CGGTGGAACTTGAACACAGTC 59.402 52.381 0.00 0.00 36.87 3.51
678 704 1.597663 GGTGGAACTTGAACACAGTCG 59.402 52.381 0.00 0.00 36.87 4.18
679 705 2.277084 GTGGAACTTGAACACAGTCGT 58.723 47.619 0.00 0.00 35.30 4.34
680 706 5.072327 GGTGGAACTTGAACACAGTCGTG 62.072 52.174 0.00 0.00 42.95 4.35
688 714 3.694746 CACAGTCGTGGGCCTAGA 58.305 61.111 4.53 0.43 39.64 2.43
689 715 1.513158 CACAGTCGTGGGCCTAGAG 59.487 63.158 4.53 0.00 39.64 2.43
690 716 1.076906 ACAGTCGTGGGCCTAGAGT 59.923 57.895 4.53 4.09 0.00 3.24
691 717 0.330604 ACAGTCGTGGGCCTAGAGTA 59.669 55.000 4.53 0.00 0.00 2.59
692 718 1.063867 ACAGTCGTGGGCCTAGAGTAT 60.064 52.381 4.53 0.00 0.00 2.12
693 719 1.338337 CAGTCGTGGGCCTAGAGTATG 59.662 57.143 4.53 0.22 0.00 2.39
694 720 0.674534 GTCGTGGGCCTAGAGTATGG 59.325 60.000 4.53 0.00 0.00 2.74
695 721 0.260816 TCGTGGGCCTAGAGTATGGT 59.739 55.000 4.53 0.00 0.00 3.55
696 722 0.389391 CGTGGGCCTAGAGTATGGTG 59.611 60.000 4.53 0.00 0.00 4.17
697 723 0.759346 GTGGGCCTAGAGTATGGTGG 59.241 60.000 4.53 0.00 0.00 4.61
698 724 1.054406 TGGGCCTAGAGTATGGTGGC 61.054 60.000 4.53 0.00 42.56 5.01
699 725 1.367840 GGCCTAGAGTATGGTGGCG 59.632 63.158 0.00 0.00 44.07 5.69
700 726 1.301009 GCCTAGAGTATGGTGGCGC 60.301 63.158 0.00 0.00 33.96 6.53
701 727 1.007271 CCTAGAGTATGGTGGCGCG 60.007 63.158 0.00 0.00 0.00 6.86
702 728 1.007271 CTAGAGTATGGTGGCGCGG 60.007 63.158 8.83 0.00 0.00 6.46
703 729 1.735376 CTAGAGTATGGTGGCGCGGT 61.735 60.000 8.83 0.00 0.00 5.68
704 730 2.011741 TAGAGTATGGTGGCGCGGTG 62.012 60.000 8.83 0.00 0.00 4.94
705 731 4.467084 AGTATGGTGGCGCGGTGG 62.467 66.667 8.83 0.00 0.00 4.61
706 732 4.460683 GTATGGTGGCGCGGTGGA 62.461 66.667 8.83 0.00 0.00 4.02
707 733 4.155733 TATGGTGGCGCGGTGGAG 62.156 66.667 8.83 0.00 0.00 3.86
714 740 2.357034 GCGCGGTGGAGACTTGAA 60.357 61.111 8.83 0.00 0.00 2.69
743 769 2.563798 CGCTGCTGGCCTTGGAAAA 61.564 57.895 3.32 0.00 37.74 2.29
1025 1055 5.624281 CGCATCTTCTTCTTCTTCTTCCTCT 60.624 44.000 0.00 0.00 0.00 3.69
1026 1056 5.581874 GCATCTTCTTCTTCTTCTTCCTCTG 59.418 44.000 0.00 0.00 0.00 3.35
1027 1057 5.736951 TCTTCTTCTTCTTCTTCCTCTGG 57.263 43.478 0.00 0.00 0.00 3.86
1028 1058 5.398236 TCTTCTTCTTCTTCTTCCTCTGGA 58.602 41.667 0.00 0.00 0.00 3.86
1069 1103 2.288702 CCCACAACCGCAATCATTGAAA 60.289 45.455 0.00 0.00 0.00 2.69
1093 1127 1.028330 AACAGGTGCAGGCATCATCG 61.028 55.000 7.35 0.00 0.00 3.84
1184 1219 0.911769 CATGGCCTCTGAGGTACCAA 59.088 55.000 23.92 9.50 37.80 3.67
1185 1220 1.492176 CATGGCCTCTGAGGTACCAAT 59.508 52.381 23.92 11.08 37.80 3.16
1186 1221 2.561209 TGGCCTCTGAGGTACCAATA 57.439 50.000 23.92 0.00 37.80 1.90
1187 1222 2.116238 TGGCCTCTGAGGTACCAATAC 58.884 52.381 23.92 5.46 37.80 1.89
1202 1237 2.780010 CCAATACCATCTCCTTCCCTGT 59.220 50.000 0.00 0.00 0.00 4.00
1203 1238 3.434167 CCAATACCATCTCCTTCCCTGTG 60.434 52.174 0.00 0.00 0.00 3.66
1221 1307 5.279708 CCCTGTGTCTCTTCTCAGTTATTGT 60.280 44.000 0.00 0.00 0.00 2.71
1223 1309 6.146837 CCTGTGTCTCTTCTCAGTTATTGTTG 59.853 42.308 0.00 0.00 0.00 3.33
1225 1311 5.409826 GTGTCTCTTCTCAGTTATTGTTGGG 59.590 44.000 0.00 0.00 0.00 4.12
1255 1341 8.954350 ACAGATCAAGAAAATCAATAGGAAGTG 58.046 33.333 0.00 0.00 0.00 3.16
1259 1345 7.402054 TCAAGAAAATCAATAGGAAGTGGCTA 58.598 34.615 0.00 0.00 0.00 3.93
1260 1346 7.554118 TCAAGAAAATCAATAGGAAGTGGCTAG 59.446 37.037 0.00 0.00 0.00 3.42
1261 1347 5.825151 AGAAAATCAATAGGAAGTGGCTAGC 59.175 40.000 6.04 6.04 0.00 3.42
1278 1369 4.446600 GGCTAGCCTAGGAGAGACTTCTAA 60.447 50.000 27.17 0.00 32.53 2.10
1289 1380 6.031471 GGAGAGACTTCTAATTTGTCGTCTC 58.969 44.000 21.10 21.10 44.59 3.36
1290 1381 5.918387 GAGACTTCTAATTTGTCGTCTCG 57.082 43.478 17.44 0.00 38.33 4.04
1291 1382 4.167268 AGACTTCTAATTTGTCGTCTCGC 58.833 43.478 7.55 0.00 36.01 5.03
1292 1383 3.251571 ACTTCTAATTTGTCGTCTCGCC 58.748 45.455 0.00 0.00 0.00 5.54
1293 1384 3.056749 ACTTCTAATTTGTCGTCTCGCCT 60.057 43.478 0.00 0.00 0.00 5.52
1294 1385 2.876091 TCTAATTTGTCGTCTCGCCTG 58.124 47.619 0.00 0.00 0.00 4.85
1295 1386 2.230508 TCTAATTTGTCGTCTCGCCTGT 59.769 45.455 0.00 0.00 0.00 4.00
1296 1387 2.736144 AATTTGTCGTCTCGCCTGTA 57.264 45.000 0.00 0.00 0.00 2.74
1297 1388 2.961526 ATTTGTCGTCTCGCCTGTAT 57.038 45.000 0.00 0.00 0.00 2.29
1298 1389 4.380841 AATTTGTCGTCTCGCCTGTATA 57.619 40.909 0.00 0.00 0.00 1.47
1299 1390 4.585955 ATTTGTCGTCTCGCCTGTATAT 57.414 40.909 0.00 0.00 0.00 0.86
1300 1391 4.380841 TTTGTCGTCTCGCCTGTATATT 57.619 40.909 0.00 0.00 0.00 1.28
1301 1392 5.503662 TTTGTCGTCTCGCCTGTATATTA 57.496 39.130 0.00 0.00 0.00 0.98
1302 1393 5.700722 TTGTCGTCTCGCCTGTATATTAT 57.299 39.130 0.00 0.00 0.00 1.28
1359 1451 6.993878 TGATCATTCGTCGAAAAGAAAGATC 58.006 36.000 23.25 23.25 44.83 2.75
1361 1453 4.326278 TCATTCGTCGAAAAGAAAGATCGG 59.674 41.667 12.40 0.00 37.20 4.18
1408 1500 6.880822 TGTTTGATCGGTTAGAATCTAACG 57.119 37.500 22.36 18.00 33.63 3.18
1409 1501 6.623486 TGTTTGATCGGTTAGAATCTAACGA 58.377 36.000 22.36 21.47 33.63 3.85
1412 1504 7.515957 TTGATCGGTTAGAATCTAACGAAAC 57.484 36.000 22.36 18.99 0.00 2.78
1413 1505 6.623486 TGATCGGTTAGAATCTAACGAAACA 58.377 36.000 22.36 20.51 0.00 2.83
1419 1511 9.047871 CGGTTAGAATCTAACGAAACAAAAATC 57.952 33.333 22.36 7.15 0.00 2.17
1432 1524 9.244799 ACGAAACAAAAATCTTTTCATCTTACC 57.755 29.630 0.00 0.00 30.91 2.85
1446 1541 1.555075 TCTTACCATGGGCAGACTGTC 59.445 52.381 18.09 0.25 0.00 3.51
1458 1553 1.341531 CAGACTGTCGTCCTCAAGGTT 59.658 52.381 1.52 0.00 41.16 3.50
1476 1571 3.512516 GCAATGTCCTGCGGAGGC 61.513 66.667 19.71 13.99 39.57 4.70
1523 1618 5.047377 TGCTCACCAAAATGGAAGGTTATTC 60.047 40.000 2.85 0.00 40.96 1.75
1524 1619 5.624509 GCTCACCAAAATGGAAGGTTATTCC 60.625 44.000 2.85 0.00 40.96 3.01
1531 1626 2.488836 TGGAAGGTTATTCCCCTCTCC 58.511 52.381 4.27 0.00 37.79 3.71
1541 1636 3.217743 CCCTCTCCGCGTCTACCC 61.218 72.222 4.92 0.00 0.00 3.69
1560 1664 2.427506 CCGCTTCCTTTCAAAGCTACT 58.572 47.619 6.32 0.00 45.50 2.57
1561 1665 2.416893 CCGCTTCCTTTCAAAGCTACTC 59.583 50.000 6.32 0.00 45.50 2.59
1562 1666 3.330267 CGCTTCCTTTCAAAGCTACTCT 58.670 45.455 6.32 0.00 45.50 3.24
1563 1667 4.495422 CGCTTCCTTTCAAAGCTACTCTA 58.505 43.478 6.32 0.00 45.50 2.43
1564 1668 4.327627 CGCTTCCTTTCAAAGCTACTCTAC 59.672 45.833 6.32 0.00 45.50 2.59
1578 1682 8.608844 AAGCTACTCTACCAATGCATTTATAC 57.391 34.615 9.83 0.00 0.00 1.47
1580 1684 6.934645 GCTACTCTACCAATGCATTTATACCA 59.065 38.462 9.83 0.00 0.00 3.25
1585 1689 7.807198 TCTACCAATGCATTTATACCAACCTA 58.193 34.615 9.83 0.00 0.00 3.08
1586 1690 6.959639 ACCAATGCATTTATACCAACCTAG 57.040 37.500 9.83 0.00 0.00 3.02
1587 1691 6.431722 ACCAATGCATTTATACCAACCTAGT 58.568 36.000 9.83 0.00 0.00 2.57
1588 1692 7.579105 ACCAATGCATTTATACCAACCTAGTA 58.421 34.615 9.83 0.00 0.00 1.82
1589 1693 8.056400 ACCAATGCATTTATACCAACCTAGTAA 58.944 33.333 9.83 0.00 0.00 2.24
1590 1694 8.908903 CCAATGCATTTATACCAACCTAGTAAA 58.091 33.333 9.83 0.00 0.00 2.01
1591 1695 9.950680 CAATGCATTTATACCAACCTAGTAAAG 57.049 33.333 9.83 0.00 0.00 1.85
1592 1696 9.695155 AATGCATTTATACCAACCTAGTAAAGT 57.305 29.630 5.99 0.00 0.00 2.66
1593 1697 9.695155 ATGCATTTATACCAACCTAGTAAAGTT 57.305 29.630 0.00 0.00 0.00 2.66
1594 1698 9.523168 TGCATTTATACCAACCTAGTAAAGTTT 57.477 29.630 0.00 0.00 0.00 2.66
1595 1699 9.999009 GCATTTATACCAACCTAGTAAAGTTTC 57.001 33.333 0.00 0.00 0.00 2.78
1606 1710 8.549338 ACCTAGTAAAGTTTCATTAGCTTGTC 57.451 34.615 0.00 0.00 0.00 3.18
1621 1725 9.033481 CATTAGCTTGTCAAAATCAGTTTCAAA 57.967 29.630 0.00 0.00 0.00 2.69
1624 1728 5.812127 GCTTGTCAAAATCAGTTTCAAACCT 59.188 36.000 0.00 0.00 0.00 3.50
1626 1730 5.577835 TGTCAAAATCAGTTTCAAACCTCG 58.422 37.500 0.00 0.00 0.00 4.63
1666 1773 5.130292 ACTTCACAGCAAATCAATTGGAG 57.870 39.130 5.42 0.00 39.54 3.86
1669 1776 4.334552 TCACAGCAAATCAATTGGAGCTA 58.665 39.130 5.42 0.00 39.54 3.32
1700 1808 7.901322 AGAATTCTATATATGGTGGCCTCACTA 59.099 37.037 6.06 0.00 43.17 2.74
1798 1909 1.160137 GCAACGTCAAGCCAGAAGAT 58.840 50.000 0.00 0.00 0.00 2.40
2010 2130 1.968017 CTTGATGGGCACGCACAGT 60.968 57.895 0.00 0.00 30.39 3.55
2058 2178 6.176183 ACTCCAAGATATTGTTGTTGAGAGG 58.824 40.000 9.38 0.00 0.00 3.69
2064 2184 6.118170 AGATATTGTTGTTGAGAGGGTCATG 58.882 40.000 0.00 0.00 34.17 3.07
2065 2185 1.896220 TGTTGTTGAGAGGGTCATGC 58.104 50.000 0.00 0.00 34.17 4.06
2066 2186 1.142667 TGTTGTTGAGAGGGTCATGCA 59.857 47.619 0.00 0.00 34.17 3.96
2067 2187 2.224843 TGTTGTTGAGAGGGTCATGCAT 60.225 45.455 0.00 0.00 34.17 3.96
2068 2188 2.118313 TGTTGAGAGGGTCATGCATG 57.882 50.000 21.07 21.07 34.17 4.06
2069 2189 1.352017 TGTTGAGAGGGTCATGCATGT 59.648 47.619 25.43 6.92 34.17 3.21
2070 2190 2.012673 GTTGAGAGGGTCATGCATGTC 58.987 52.381 25.43 19.92 34.17 3.06
2071 2191 1.576577 TGAGAGGGTCATGCATGTCT 58.423 50.000 25.43 20.00 0.00 3.41
2072 2192 1.208776 TGAGAGGGTCATGCATGTCTG 59.791 52.381 25.43 2.22 0.00 3.51
2105 2230 4.913345 CACGATGTTACTTACGAGTTGACA 59.087 41.667 0.00 0.00 37.33 3.58
2160 2288 7.287950 TGATTTAGAAAAATGAACACGTCGAG 58.712 34.615 0.00 0.00 35.41 4.04
2173 2301 2.923655 CACGTCGAGCACATGATTTACT 59.076 45.455 0.00 0.00 0.00 2.24
2256 2384 5.092781 GCCGTCCATGTTAAATTTACACAG 58.907 41.667 14.32 9.16 0.00 3.66
2258 2386 6.311723 CCGTCCATGTTAAATTTACACAGAC 58.688 40.000 14.32 14.43 32.04 3.51
2307 2436 6.302535 TGTTGTATTAAGGCCTACTTGCTA 57.697 37.500 5.16 0.00 40.37 3.49
2365 2495 2.190488 GAGACTGCTGGGGTTGGAGG 62.190 65.000 0.00 0.00 0.00 4.30
2374 2504 2.106683 GGGTTGGAGGAATCGCACG 61.107 63.158 0.00 0.00 0.00 5.34
2397 2527 1.068741 GTCGTCAACAACTCTCCCTGT 59.931 52.381 0.00 0.00 0.00 4.00
2527 2660 1.452110 TGTGGAATGAATGGCTCGTG 58.548 50.000 0.00 0.00 0.00 4.35
2529 2662 1.398390 GTGGAATGAATGGCTCGTGTC 59.602 52.381 0.00 0.00 0.00 3.67
2537 2670 1.820010 ATGGCTCGTGTCTGCAGTCA 61.820 55.000 14.67 12.07 0.00 3.41
2545 2678 1.261619 GTGTCTGCAGTCAAACTTCGG 59.738 52.381 15.31 0.00 0.00 4.30
2580 2714 2.266055 GGAGTTGTGCCGGGAGAG 59.734 66.667 2.18 0.00 0.00 3.20
2581 2715 2.435059 GAGTTGTGCCGGGAGAGC 60.435 66.667 2.18 0.00 0.00 4.09
2582 2716 4.379243 AGTTGTGCCGGGAGAGCG 62.379 66.667 2.18 0.00 0.00 5.03
2633 2787 1.513158 CGGGAGCACCACTACTCAG 59.487 63.158 1.58 0.00 40.22 3.35
2710 2868 4.922206 AGTGCAAATGTCTCCTTCCATAA 58.078 39.130 0.00 0.00 0.00 1.90
2739 2897 5.419155 CCCTCCGTCTCATAATATAAGAGCA 59.581 44.000 0.00 0.00 0.00 4.26
2785 2959 9.851043 GTCAAAAACGCTCTTATATTATGAGAC 57.149 33.333 0.00 0.00 33.20 3.36
2786 2960 9.594478 TCAAAAACGCTCTTATATTATGAGACA 57.406 29.630 0.00 0.00 33.20 3.41
2943 3181 7.703058 AGAATCCGGTTATCATGTTTTCTTT 57.297 32.000 0.00 0.00 0.00 2.52
2944 3182 7.762382 AGAATCCGGTTATCATGTTTTCTTTC 58.238 34.615 0.00 0.00 0.00 2.62
2945 3183 5.539582 TCCGGTTATCATGTTTTCTTTCG 57.460 39.130 0.00 0.00 0.00 3.46
3092 3334 7.201803 GGAGAATACAAGACAAGGTCTATACGT 60.202 40.741 0.00 0.00 42.59 3.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.531538 TCTCGAGAAAGCAAAACTGTGT 58.468 40.909 14.01 0.00 0.00 3.72
23 24 0.591659 CACAACCGTGTCTCTCGAGA 59.408 55.000 15.70 15.70 38.41 4.04
25 26 1.007734 GCACAACCGTGTCTCTCGA 60.008 57.895 0.00 0.00 45.50 4.04
246 259 1.278127 TCCGAAAGAGGAACACCCATC 59.722 52.381 0.00 0.00 37.36 3.51
370 387 1.281867 ACCATTGGATTCCTCGCTTCA 59.718 47.619 10.37 0.00 0.00 3.02
387 404 4.458989 CCAAATCTCGAATCCTTTTCACCA 59.541 41.667 0.00 0.00 0.00 4.17
396 413 1.327764 GCGTGTCCAAATCTCGAATCC 59.672 52.381 0.00 0.00 0.00 3.01
398 415 0.999406 CGCGTGTCCAAATCTCGAAT 59.001 50.000 0.00 0.00 0.00 3.34
462 481 2.618709 CGCAACCTGAGAGTTTTCCTTT 59.381 45.455 0.00 0.00 0.00 3.11
464 483 1.416401 TCGCAACCTGAGAGTTTTCCT 59.584 47.619 0.00 0.00 0.00 3.36
485 504 2.869646 GCTGCATGTGCGCACTTA 59.130 55.556 37.59 21.95 45.83 2.24
514 539 3.070015 CACTTCCAATTTTCCTGGTTGCT 59.930 43.478 0.00 0.00 35.30 3.91
547 573 8.668353 GCAAAATCACTAATTGATGAGTACTCA 58.332 33.333 27.07 27.07 44.86 3.41
582 608 0.308993 GCGCTTTGTTTGAGAGCAGT 59.691 50.000 0.00 0.00 39.36 4.40
583 609 0.723790 CGCGCTTTGTTTGAGAGCAG 60.724 55.000 5.56 0.00 39.50 4.24
615 641 1.338337 CATACTCTAGGCCCACGACTG 59.662 57.143 0.00 0.00 0.00 3.51
619 645 0.389391 CACCATACTCTAGGCCCACG 59.611 60.000 0.00 0.00 0.00 4.94
650 676 4.250305 AAGTTCCACCGCGCCACT 62.250 61.111 0.00 0.00 0.00 4.00
664 690 0.814010 GCCCACGACTGTGTTCAAGT 60.814 55.000 0.00 0.00 44.92 3.16
665 691 1.507141 GGCCCACGACTGTGTTCAAG 61.507 60.000 0.00 0.00 44.92 3.02
666 692 1.525077 GGCCCACGACTGTGTTCAA 60.525 57.895 0.00 0.00 44.92 2.69
667 693 1.116536 TAGGCCCACGACTGTGTTCA 61.117 55.000 0.00 0.00 44.92 3.18
668 694 0.389948 CTAGGCCCACGACTGTGTTC 60.390 60.000 0.00 0.00 44.92 3.18
669 695 0.830444 TCTAGGCCCACGACTGTGTT 60.830 55.000 0.00 0.00 44.92 3.32
670 696 1.228769 TCTAGGCCCACGACTGTGT 60.229 57.895 0.00 0.00 44.92 3.72
671 697 1.251527 ACTCTAGGCCCACGACTGTG 61.252 60.000 0.00 0.00 46.00 3.66
672 698 0.330604 TACTCTAGGCCCACGACTGT 59.669 55.000 0.00 0.00 0.00 3.55
673 699 1.338337 CATACTCTAGGCCCACGACTG 59.662 57.143 0.00 0.00 0.00 3.51
674 700 1.693627 CATACTCTAGGCCCACGACT 58.306 55.000 0.00 0.00 0.00 4.18
675 701 0.674534 CCATACTCTAGGCCCACGAC 59.325 60.000 0.00 0.00 0.00 4.34
676 702 0.260816 ACCATACTCTAGGCCCACGA 59.739 55.000 0.00 0.00 0.00 4.35
677 703 0.389391 CACCATACTCTAGGCCCACG 59.611 60.000 0.00 0.00 0.00 4.94
678 704 0.759346 CCACCATACTCTAGGCCCAC 59.241 60.000 0.00 0.00 0.00 4.61
679 705 1.054406 GCCACCATACTCTAGGCCCA 61.054 60.000 0.00 0.00 39.42 5.36
680 706 1.755384 GCCACCATACTCTAGGCCC 59.245 63.158 0.00 0.00 39.42 5.80
681 707 1.367840 CGCCACCATACTCTAGGCC 59.632 63.158 0.00 0.00 42.28 5.19
682 708 1.301009 GCGCCACCATACTCTAGGC 60.301 63.158 0.00 0.00 41.86 3.93
683 709 1.007271 CGCGCCACCATACTCTAGG 60.007 63.158 0.00 0.00 0.00 3.02
684 710 1.007271 CCGCGCCACCATACTCTAG 60.007 63.158 0.00 0.00 0.00 2.43
685 711 1.755395 ACCGCGCCACCATACTCTA 60.755 57.895 0.00 0.00 0.00 2.43
686 712 3.075005 ACCGCGCCACCATACTCT 61.075 61.111 0.00 0.00 0.00 3.24
687 713 2.890474 CACCGCGCCACCATACTC 60.890 66.667 0.00 0.00 0.00 2.59
688 714 4.467084 CCACCGCGCCACCATACT 62.467 66.667 0.00 0.00 0.00 2.12
689 715 4.460683 TCCACCGCGCCACCATAC 62.461 66.667 0.00 0.00 0.00 2.39
690 716 4.155733 CTCCACCGCGCCACCATA 62.156 66.667 0.00 0.00 0.00 2.74
694 720 4.681978 AAGTCTCCACCGCGCCAC 62.682 66.667 0.00 0.00 0.00 5.01
695 721 4.680237 CAAGTCTCCACCGCGCCA 62.680 66.667 0.00 0.00 0.00 5.69
696 722 3.876589 TTCAAGTCTCCACCGCGCC 62.877 63.158 0.00 0.00 0.00 6.53
697 723 1.959226 TTTCAAGTCTCCACCGCGC 60.959 57.895 0.00 0.00 0.00 6.86
698 724 0.600255 AGTTTCAAGTCTCCACCGCG 60.600 55.000 0.00 0.00 0.00 6.46
699 725 1.149148 GAGTTTCAAGTCTCCACCGC 58.851 55.000 0.00 0.00 0.00 5.68
700 726 2.135933 GTGAGTTTCAAGTCTCCACCG 58.864 52.381 0.00 0.00 0.00 4.94
701 727 3.070302 AGAGTGAGTTTCAAGTCTCCACC 59.930 47.826 0.00 0.00 0.00 4.61
702 728 4.329462 AGAGTGAGTTTCAAGTCTCCAC 57.671 45.455 0.00 0.00 0.00 4.02
703 729 4.499865 CGAAGAGTGAGTTTCAAGTCTCCA 60.500 45.833 0.00 0.00 0.00 3.86
704 730 3.984633 CGAAGAGTGAGTTTCAAGTCTCC 59.015 47.826 0.00 0.00 0.00 3.71
705 731 3.427193 GCGAAGAGTGAGTTTCAAGTCTC 59.573 47.826 0.00 0.00 0.00 3.36
706 732 3.068873 AGCGAAGAGTGAGTTTCAAGTCT 59.931 43.478 0.00 0.00 0.00 3.24
707 733 3.183373 CAGCGAAGAGTGAGTTTCAAGTC 59.817 47.826 0.00 0.00 0.00 3.01
714 740 0.320247 CCAGCAGCGAAGAGTGAGTT 60.320 55.000 0.00 0.00 0.00 3.01
743 769 4.142004 GGGGTCGTTGTACATAGATTCTGT 60.142 45.833 0.00 0.00 0.00 3.41
811 837 0.459078 GCCGGAAGTAGTACACCCTC 59.541 60.000 5.05 0.00 0.00 4.30
1025 1055 2.846193 GGCTTAAATAGACGCCATCCA 58.154 47.619 0.00 0.00 42.06 3.41
1069 1103 2.072874 ATGCCTGCACCTGTTCTGGT 62.073 55.000 0.00 0.00 41.77 4.00
1093 1127 0.959372 TGTCGTCGGAGGGAGAGTTC 60.959 60.000 0.00 0.00 0.00 3.01
1184 1219 3.041946 GACACAGGGAAGGAGATGGTAT 58.958 50.000 0.00 0.00 0.00 2.73
1185 1220 2.044492 AGACACAGGGAAGGAGATGGTA 59.956 50.000 0.00 0.00 0.00 3.25
1186 1221 1.203364 AGACACAGGGAAGGAGATGGT 60.203 52.381 0.00 0.00 0.00 3.55
1187 1222 1.484240 GAGACACAGGGAAGGAGATGG 59.516 57.143 0.00 0.00 0.00 3.51
1188 1223 2.465813 AGAGACACAGGGAAGGAGATG 58.534 52.381 0.00 0.00 0.00 2.90
1189 1224 2.938428 AGAGACACAGGGAAGGAGAT 57.062 50.000 0.00 0.00 0.00 2.75
1202 1237 5.071788 ACCCAACAATAACTGAGAAGAGACA 59.928 40.000 0.00 0.00 0.00 3.41
1203 1238 5.409826 CACCCAACAATAACTGAGAAGAGAC 59.590 44.000 0.00 0.00 0.00 3.36
1221 1307 5.832595 TGATTTTCTTGATCTGTTCACCCAA 59.167 36.000 0.00 0.00 32.84 4.12
1223 1309 5.964958 TGATTTTCTTGATCTGTTCACCC 57.035 39.130 0.00 0.00 32.84 4.61
1225 1311 8.950210 TCCTATTGATTTTCTTGATCTGTTCAC 58.050 33.333 0.00 0.00 32.84 3.18
1255 1341 2.158519 AGAAGTCTCTCCTAGGCTAGCC 60.159 54.545 27.19 27.19 40.07 3.93
1259 1345 5.961421 ACAAATTAGAAGTCTCTCCTAGGCT 59.039 40.000 2.96 0.00 44.00 4.58
1260 1346 6.228616 ACAAATTAGAAGTCTCTCCTAGGC 57.771 41.667 2.96 0.00 32.70 3.93
1261 1347 6.095720 ACGACAAATTAGAAGTCTCTCCTAGG 59.904 42.308 0.82 0.82 32.70 3.02
1278 1369 2.961526 ATACAGGCGAGACGACAAAT 57.038 45.000 0.00 0.00 37.34 2.32
1312 1403 8.801882 TCAACTAATTAATCTAACAAGGGGTG 57.198 34.615 0.00 0.00 0.00 4.61
1323 1414 9.529325 TTCGACGAATGATCAACTAATTAATCT 57.471 29.630 6.10 0.00 0.00 2.40
1326 1417 9.967245 CTTTTCGACGAATGATCAACTAATTAA 57.033 29.630 11.71 0.00 0.00 1.40
1327 1418 9.361315 TCTTTTCGACGAATGATCAACTAATTA 57.639 29.630 11.71 0.00 0.00 1.40
1328 1419 8.251750 TCTTTTCGACGAATGATCAACTAATT 57.748 30.769 11.71 0.00 0.00 1.40
1347 1438 5.779806 TCGATCAACCGATCTTTCTTTTC 57.220 39.130 0.00 0.00 45.11 2.29
1359 1451 6.771188 ATCTTAGCTTATTTCGATCAACCG 57.229 37.500 0.00 0.00 0.00 4.44
1412 1504 7.064966 GCCCATGGTAAGATGAAAAGATTTTTG 59.935 37.037 11.73 0.00 0.00 2.44
1413 1505 7.105588 GCCCATGGTAAGATGAAAAGATTTTT 58.894 34.615 11.73 0.00 0.00 1.94
1419 1511 4.096984 GTCTGCCCATGGTAAGATGAAAAG 59.903 45.833 11.73 0.00 0.00 2.27
1422 1514 2.846206 AGTCTGCCCATGGTAAGATGAA 59.154 45.455 11.73 0.00 0.00 2.57
1431 1523 1.448540 GACGACAGTCTGCCCATGG 60.449 63.158 4.14 4.14 43.80 3.66
1432 1524 1.448540 GGACGACAGTCTGCCCATG 60.449 63.158 0.00 0.00 46.29 3.66
1446 1541 1.197721 GACATTGCAACCTTGAGGACG 59.802 52.381 0.00 0.00 38.94 4.79
1485 1580 0.109723 TGAGCACCCTTTTAACCGCT 59.890 50.000 0.00 0.00 0.00 5.52
1523 1618 3.217743 GGTAGACGCGGAGAGGGG 61.218 72.222 12.47 0.00 37.07 4.79
1524 1619 3.217743 GGGTAGACGCGGAGAGGG 61.218 72.222 12.47 0.00 38.93 4.30
1560 1664 6.668645 AGGTTGGTATAAATGCATTGGTAGA 58.331 36.000 13.82 0.00 0.00 2.59
1561 1665 6.959639 AGGTTGGTATAAATGCATTGGTAG 57.040 37.500 13.82 0.00 0.00 3.18
1562 1666 7.579105 ACTAGGTTGGTATAAATGCATTGGTA 58.421 34.615 13.82 6.33 0.00 3.25
1563 1667 6.431722 ACTAGGTTGGTATAAATGCATTGGT 58.568 36.000 13.82 7.36 0.00 3.67
1564 1668 6.959639 ACTAGGTTGGTATAAATGCATTGG 57.040 37.500 13.82 0.00 0.00 3.16
1578 1682 7.923414 AGCTAATGAAACTTTACTAGGTTGG 57.077 36.000 0.00 0.00 32.64 3.77
1580 1684 8.919777 ACAAGCTAATGAAACTTTACTAGGTT 57.080 30.769 0.00 0.00 36.16 3.50
1588 1692 9.252962 CTGATTTTGACAAGCTAATGAAACTTT 57.747 29.630 0.00 0.00 0.00 2.66
1589 1693 8.416329 ACTGATTTTGACAAGCTAATGAAACTT 58.584 29.630 0.00 0.00 0.00 2.66
1590 1694 7.945134 ACTGATTTTGACAAGCTAATGAAACT 58.055 30.769 0.00 0.00 0.00 2.66
1591 1695 8.579682 AACTGATTTTGACAAGCTAATGAAAC 57.420 30.769 0.00 0.00 0.00 2.78
1592 1696 9.248291 GAAACTGATTTTGACAAGCTAATGAAA 57.752 29.630 0.00 0.00 0.00 2.69
1593 1697 8.412456 TGAAACTGATTTTGACAAGCTAATGAA 58.588 29.630 0.00 0.00 0.00 2.57
1594 1698 7.939782 TGAAACTGATTTTGACAAGCTAATGA 58.060 30.769 0.00 0.00 0.00 2.57
1595 1699 8.578308 TTGAAACTGATTTTGACAAGCTAATG 57.422 30.769 0.00 0.00 0.00 1.90
1596 1700 9.034544 GTTTGAAACTGATTTTGACAAGCTAAT 57.965 29.630 0.00 0.00 0.00 1.73
1597 1701 7.491048 GGTTTGAAACTGATTTTGACAAGCTAA 59.509 33.333 8.09 0.00 0.00 3.09
1598 1702 6.978080 GGTTTGAAACTGATTTTGACAAGCTA 59.022 34.615 8.09 0.00 0.00 3.32
1599 1703 5.812127 GGTTTGAAACTGATTTTGACAAGCT 59.188 36.000 8.09 0.00 0.00 3.74
1606 1710 5.687285 CCTTCGAGGTTTGAAACTGATTTTG 59.313 40.000 8.09 0.00 0.00 2.44
1621 1725 4.903045 TTTTAGTCATTCCCTTCGAGGT 57.097 40.909 0.00 0.00 31.93 3.85
1669 1776 9.117223 AGGCCACCATATATAGAATTCTAGTTT 57.883 33.333 19.51 6.80 0.00 2.66
1683 1790 5.046591 GCATTAGTAGTGAGGCCACCATATA 60.047 44.000 5.01 0.00 44.22 0.86
1684 1791 4.263068 GCATTAGTAGTGAGGCCACCATAT 60.263 45.833 5.01 0.00 44.22 1.78
1685 1792 3.071023 GCATTAGTAGTGAGGCCACCATA 59.929 47.826 5.01 0.00 44.22 2.74
1686 1793 2.158755 GCATTAGTAGTGAGGCCACCAT 60.159 50.000 5.01 0.00 44.22 3.55
1700 1808 4.013050 GGGAGAAGAAGCAAAGCATTAGT 58.987 43.478 0.00 0.00 0.00 2.24
1798 1909 1.124780 TGGAGACCGTCTGGAAAACA 58.875 50.000 5.57 0.00 39.21 2.83
2010 2130 3.545124 AAGGTCACGGCGGCATCAA 62.545 57.895 13.24 0.00 0.00 2.57
2058 2178 2.475466 CGCCCAGACATGCATGACC 61.475 63.158 32.75 21.78 0.00 4.02
2064 2184 2.568090 CAAACCGCCCAGACATGC 59.432 61.111 0.00 0.00 0.00 4.06
2065 2185 2.267351 TGCAAACCGCCCAGACATG 61.267 57.895 0.00 0.00 41.33 3.21
2066 2186 2.115052 TGCAAACCGCCCAGACAT 59.885 55.556 0.00 0.00 41.33 3.06
2067 2187 2.904866 GTGCAAACCGCCCAGACA 60.905 61.111 0.00 0.00 41.33 3.41
2068 2188 4.025401 CGTGCAAACCGCCCAGAC 62.025 66.667 0.00 0.00 41.33 3.51
2069 2189 3.545124 ATCGTGCAAACCGCCCAGA 62.545 57.895 0.00 0.00 41.33 3.86
2070 2190 3.055719 ATCGTGCAAACCGCCCAG 61.056 61.111 0.00 0.00 41.33 4.45
2071 2191 3.361158 CATCGTGCAAACCGCCCA 61.361 61.111 0.00 0.00 41.33 5.36
2072 2192 1.579084 TAACATCGTGCAAACCGCCC 61.579 55.000 0.00 0.00 41.33 6.13
2105 2230 8.192110 ACACTTTGTTTATTCCATTACGTTGTT 58.808 29.630 0.00 0.00 0.00 2.83
2185 2313 8.085296 CGGAAGAGCTGTAGAACATTAATAGAT 58.915 37.037 0.00 0.00 0.00 1.98
2397 2527 1.142314 GGCGGCAGATACACGGTAA 59.858 57.895 3.07 0.00 0.00 2.85
2515 2648 0.671472 CTGCAGACACGAGCCATTCA 60.671 55.000 8.42 0.00 0.00 2.57
2527 2660 0.235926 GCCGAAGTTTGACTGCAGAC 59.764 55.000 23.35 15.92 0.00 3.51
2529 2662 1.205064 CGCCGAAGTTTGACTGCAG 59.795 57.895 13.48 13.48 0.00 4.41
2537 2670 2.048503 ACGCTAGCGCCGAAGTTT 60.049 55.556 35.63 12.06 44.19 2.66
2580 2714 0.739813 CCACCTTGTAGTAGTGCCGC 60.740 60.000 0.00 0.00 0.00 6.53
2581 2715 0.606604 ACCACCTTGTAGTAGTGCCG 59.393 55.000 0.00 0.00 0.00 5.69
2582 2716 1.338769 CCACCACCTTGTAGTAGTGCC 60.339 57.143 0.00 0.00 0.00 5.01
2584 2718 2.367567 ACACCACCACCTTGTAGTAGTG 59.632 50.000 0.00 0.00 0.00 2.74
2587 2721 1.071071 GCACACCACCACCTTGTAGTA 59.929 52.381 0.00 0.00 0.00 1.82
2588 2722 0.179029 GCACACCACCACCTTGTAGT 60.179 55.000 0.00 0.00 0.00 2.73
2615 2769 0.965866 TCTGAGTAGTGGTGCTCCCG 60.966 60.000 1.59 0.00 34.63 5.14
2633 2787 1.405256 CCTGCTGACAGTCCATGACTC 60.405 57.143 3.99 0.00 41.37 3.36
2710 2868 8.558312 TCTTATATTATGAGACGGAGGGAGTAT 58.442 37.037 0.00 0.00 0.00 2.12
2752 2910 4.531659 AAGAGCGTTTTTGACACTACAC 57.468 40.909 0.00 0.00 0.00 2.90
2785 2959 7.624360 TGCAAATTATGTAGTACTCCCTTTG 57.376 36.000 0.00 4.10 0.00 2.77
2786 2960 8.052748 TGATGCAAATTATGTAGTACTCCCTTT 58.947 33.333 0.00 0.00 0.00 3.11
2787 2961 7.573710 TGATGCAAATTATGTAGTACTCCCTT 58.426 34.615 0.00 0.00 0.00 3.95
2944 3182 3.980646 TGATAATCGGATTTTTGCCCG 57.019 42.857 8.76 0.00 46.57 6.13
2945 3183 4.039124 ACCATGATAATCGGATTTTTGCCC 59.961 41.667 8.76 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.