Multiple sequence alignment - TraesCS7B01G336800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G336800 chr7B 100.000 2480 0 0 1 2480 591722936 591725415 0.000000e+00 4580.0
1 TraesCS7B01G336800 chr7B 85.069 1306 96 45 305 1600 591948883 591950099 0.000000e+00 1240.0
2 TraesCS7B01G336800 chr7B 93.609 798 33 9 934 1724 591713383 591714169 0.000000e+00 1175.0
3 TraesCS7B01G336800 chr7B 93.689 713 36 5 772 1483 592348572 592347868 0.000000e+00 1059.0
4 TraesCS7B01G336800 chr7B 87.610 912 61 21 1 871 591717949 591718849 0.000000e+00 1011.0
5 TraesCS7B01G336800 chr7B 90.502 737 35 15 776 1507 592355554 592354848 0.000000e+00 941.0
6 TraesCS7B01G336800 chr7D 90.563 1208 76 22 532 1722 548708588 548709774 0.000000e+00 1565.0
7 TraesCS7B01G336800 chr7D 92.643 802 36 9 934 1724 548697092 548697881 0.000000e+00 1133.0
8 TraesCS7B01G336800 chr7D 92.776 706 37 6 778 1483 548776820 548776129 0.000000e+00 1009.0
9 TraesCS7B01G336800 chr7D 91.472 727 32 11 776 1502 548782240 548781544 0.000000e+00 972.0
10 TraesCS7B01G336800 chr7D 90.604 596 42 9 1 585 548707995 548708587 0.000000e+00 778.0
11 TraesCS7B01G336800 chr7D 83.307 629 75 18 1 609 548711094 548711712 1.000000e-153 553.0
12 TraesCS7B01G336800 chr7A 89.340 985 64 22 776 1757 632531889 632532835 0.000000e+00 1199.0
13 TraesCS7B01G336800 chr7A 91.632 729 44 7 776 1504 632551331 632550620 0.000000e+00 992.0
14 TraesCS7B01G336800 chr7A 90.301 732 36 11 776 1502 632581926 632581225 0.000000e+00 926.0
15 TraesCS7B01G336800 chr7A 93.870 571 26 1 934 1504 632526566 632527127 0.000000e+00 852.0
16 TraesCS7B01G336800 chr7A 95.122 41 2 0 345 385 652610790 652610830 5.730000e-07 65.8
17 TraesCS7B01G336800 chr7A 97.297 37 1 0 2427 2463 40916448 40916412 2.060000e-06 63.9
18 TraesCS7B01G336800 chr3B 83.217 286 31 11 2210 2479 776104148 776103864 1.900000e-61 246.0
19 TraesCS7B01G336800 chr3B 81.604 212 26 8 2276 2480 593864124 593864329 1.970000e-36 163.0
20 TraesCS7B01G336800 chr6D 85.062 241 25 3 2242 2480 411554421 411554652 4.120000e-58 235.0
21 TraesCS7B01G336800 chr4A 84.314 204 22 3 2281 2480 475953642 475953839 9.050000e-45 191.0
22 TraesCS7B01G336800 chr3A 81.781 247 25 8 2242 2480 100871393 100871627 3.260000e-44 189.0
23 TraesCS7B01G336800 chr6B 80.645 248 39 5 2242 2480 670030742 670030495 1.510000e-42 183.0
24 TraesCS7B01G336800 chr5D 79.412 204 26 14 137 331 232595724 232595528 2.000000e-26 130.0
25 TraesCS7B01G336800 chr1D 77.934 213 40 3 2268 2473 386961661 386961449 2.590000e-25 126.0
26 TraesCS7B01G336800 chr4D 75.309 243 43 14 151 385 464398130 464397897 1.570000e-17 100.0
27 TraesCS7B01G336800 chr4B 77.419 155 18 12 2036 2180 57056595 57056448 2.640000e-10 76.8
28 TraesCS7B01G336800 chr4B 100.000 39 0 0 2276 2314 57053096 57053058 3.420000e-09 73.1
29 TraesCS7B01G336800 chr2B 76.190 147 24 11 245 384 6255262 6255404 1.590000e-07 67.6
30 TraesCS7B01G336800 chr5A 90.196 51 4 1 2427 2476 691701397 691701347 5.730000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G336800 chr7B 591722936 591725415 2479 False 4580.000000 4580 100.0000 1 2480 1 chr7B.!!$F1 2479
1 TraesCS7B01G336800 chr7B 591948883 591950099 1216 False 1240.000000 1240 85.0690 305 1600 1 chr7B.!!$F2 1295
2 TraesCS7B01G336800 chr7B 591713383 591718849 5466 False 1093.000000 1175 90.6095 1 1724 2 chr7B.!!$F3 1723
3 TraesCS7B01G336800 chr7B 592347868 592348572 704 True 1059.000000 1059 93.6890 772 1483 1 chr7B.!!$R1 711
4 TraesCS7B01G336800 chr7B 592354848 592355554 706 True 941.000000 941 90.5020 776 1507 1 chr7B.!!$R2 731
5 TraesCS7B01G336800 chr7D 548697092 548697881 789 False 1133.000000 1133 92.6430 934 1724 1 chr7D.!!$F1 790
6 TraesCS7B01G336800 chr7D 548776129 548776820 691 True 1009.000000 1009 92.7760 778 1483 1 chr7D.!!$R1 705
7 TraesCS7B01G336800 chr7D 548781544 548782240 696 True 972.000000 972 91.4720 776 1502 1 chr7D.!!$R2 726
8 TraesCS7B01G336800 chr7D 548707995 548711712 3717 False 965.333333 1565 88.1580 1 1722 3 chr7D.!!$F2 1721
9 TraesCS7B01G336800 chr7A 632531889 632532835 946 False 1199.000000 1199 89.3400 776 1757 1 chr7A.!!$F2 981
10 TraesCS7B01G336800 chr7A 632550620 632551331 711 True 992.000000 992 91.6320 776 1504 1 chr7A.!!$R2 728
11 TraesCS7B01G336800 chr7A 632581225 632581926 701 True 926.000000 926 90.3010 776 1502 1 chr7A.!!$R3 726
12 TraesCS7B01G336800 chr7A 632526566 632527127 561 False 852.000000 852 93.8700 934 1504 1 chr7A.!!$F1 570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
900 993 0.033208 ACTCAGCCTCTCCTCCTCTG 60.033 60.0 0.0 0.0 0.0 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2251 4138 0.035056 CCACTCCCACCTGGTCAATC 60.035 60.0 0.0 0.0 34.77 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.597578 ACCCCCGTCTTTGCTTTATT 57.402 45.000 0.00 0.00 0.00 1.40
46 47 2.434359 GGACTTGAAGCCGGACCG 60.434 66.667 5.05 6.99 0.00 4.79
81 83 1.418097 ATGCTGTCCACCACTCCACA 61.418 55.000 0.00 0.00 0.00 4.17
84 86 0.397941 CTGTCCACCACTCCACACAT 59.602 55.000 0.00 0.00 0.00 3.21
93 95 2.562738 CCACTCCACACATGAGTACTCA 59.437 50.000 27.07 27.07 41.02 3.41
153 155 7.463469 TTTCCTCTTTCGCTTTTCATTTTTC 57.537 32.000 0.00 0.00 0.00 2.29
163 165 6.587990 TCGCTTTTCATTTTTCAAAGTGTTCA 59.412 30.769 0.00 0.00 38.57 3.18
167 169 8.472683 TTTTCATTTTTCAAAGTGTTCATCGT 57.527 26.923 0.00 0.00 0.00 3.73
168 170 7.448588 TTCATTTTTCAAAGTGTTCATCGTG 57.551 32.000 0.00 0.00 0.00 4.35
295 297 9.761504 TCATCAAAACATGTATTTGAACAATGT 57.238 25.926 25.77 14.28 46.46 2.71
672 739 4.945246 TCAGATTGTAGACCGATAAAGGC 58.055 43.478 0.00 0.00 33.69 4.35
676 743 5.601313 AGATTGTAGACCGATAAAGGCCTTA 59.399 40.000 20.84 7.79 33.69 2.69
696 763 2.508526 AGCTGGATGACAAAACAGGTC 58.491 47.619 0.00 0.00 37.08 3.85
701 768 3.383185 TGGATGACAAAACAGGTCCAAAC 59.617 43.478 0.00 0.00 33.15 2.93
757 824 4.467735 GTCGCTTTGGAGATGAGAAAAAC 58.532 43.478 0.00 0.00 0.00 2.43
758 825 4.024048 GTCGCTTTGGAGATGAGAAAAACA 60.024 41.667 0.00 0.00 0.00 2.83
769 856 6.397272 AGATGAGAAAAACAAGCAACAAACA 58.603 32.000 0.00 0.00 0.00 2.83
770 857 5.837586 TGAGAAAAACAAGCAACAAACAC 57.162 34.783 0.00 0.00 0.00 3.32
771 858 5.292765 TGAGAAAAACAAGCAACAAACACA 58.707 33.333 0.00 0.00 0.00 3.72
772 859 5.931146 TGAGAAAAACAAGCAACAAACACAT 59.069 32.000 0.00 0.00 0.00 3.21
773 860 7.093354 TGAGAAAAACAAGCAACAAACACATA 58.907 30.769 0.00 0.00 0.00 2.29
774 861 7.062839 TGAGAAAAACAAGCAACAAACACATAC 59.937 33.333 0.00 0.00 0.00 2.39
790 877 4.039245 ACACATACTCCATATCTTGACCCG 59.961 45.833 0.00 0.00 0.00 5.28
900 993 0.033208 ACTCAGCCTCTCCTCCTCTG 60.033 60.000 0.00 0.00 0.00 3.35
1490 1608 0.686112 AAGGCTTAGAGAGAGGCGCT 60.686 55.000 7.64 0.00 43.76 5.92
1504 1626 1.146358 GGCGCTCGTCGATTAGCTTT 61.146 55.000 7.64 0.00 41.67 3.51
1558 1685 6.771267 ACTAATGGTGTCGATGTAGATCTGTA 59.229 38.462 5.18 0.00 0.00 2.74
1559 1686 5.697473 ATGGTGTCGATGTAGATCTGTAG 57.303 43.478 5.18 0.00 0.00 2.74
1560 1687 4.524053 TGGTGTCGATGTAGATCTGTAGT 58.476 43.478 5.18 0.00 0.00 2.73
1561 1688 4.948004 TGGTGTCGATGTAGATCTGTAGTT 59.052 41.667 5.18 0.00 0.00 2.24
1562 1689 5.066117 TGGTGTCGATGTAGATCTGTAGTTC 59.934 44.000 5.18 0.00 0.00 3.01
1563 1690 5.297278 GGTGTCGATGTAGATCTGTAGTTCT 59.703 44.000 5.18 0.00 0.00 3.01
1564 1691 6.195868 GTGTCGATGTAGATCTGTAGTTCTG 58.804 44.000 5.18 0.00 0.00 3.02
1565 1692 5.880887 TGTCGATGTAGATCTGTAGTTCTGT 59.119 40.000 5.18 0.00 0.00 3.41
1566 1693 7.011202 GTGTCGATGTAGATCTGTAGTTCTGTA 59.989 40.741 5.18 0.00 0.00 2.74
1581 1708 2.858745 TCTGTACTGCCAGGGAAAAAC 58.141 47.619 0.00 0.00 33.14 2.43
1582 1709 2.173782 TCTGTACTGCCAGGGAAAAACA 59.826 45.455 0.00 0.00 33.14 2.83
1623 1750 8.632679 TCTGATTTATTATCCAAATTGTCTGCC 58.367 33.333 0.00 0.00 0.00 4.85
1631 1758 1.608590 CAAATTGTCTGCCCTGTCGTT 59.391 47.619 0.00 0.00 0.00 3.85
1644 1771 4.437390 GCCCTGTCGTTTGTTCTTGATATG 60.437 45.833 0.00 0.00 0.00 1.78
1664 1791 2.749076 TGGCAATGTGACATAAGTGCTC 59.251 45.455 17.23 10.04 24.43 4.26
1735 1864 6.134040 CATTGGAAAGGCAAAATTTGTTGT 57.866 33.333 7.60 0.00 0.00 3.32
1751 1881 9.666626 AAATTTGTTGTAAATTCGTGATTCGTA 57.333 25.926 0.00 0.00 40.80 3.43
1757 1887 5.808030 TGTAAATTCGTGATTCGTATGAGCA 59.192 36.000 0.00 0.00 40.80 4.26
1759 1889 5.991328 AATTCGTGATTCGTATGAGCAAT 57.009 34.783 0.00 0.00 40.80 3.56
1761 1891 2.539688 TCGTGATTCGTATGAGCAATGC 59.460 45.455 0.00 0.00 40.80 3.56
1762 1892 2.657427 CGTGATTCGTATGAGCAATGCG 60.657 50.000 0.00 3.97 44.78 4.73
1763 1893 1.261354 TGATTCGTATGAGCAATGCGC 59.739 47.619 0.00 0.00 43.30 6.09
1764 1894 1.261354 GATTCGTATGAGCAATGCGCA 59.739 47.619 14.96 14.96 46.13 6.09
1767 1897 1.704387 CGTATGAGCAATGCGCACCA 61.704 55.000 14.90 6.48 41.64 4.17
1769 1899 0.664224 TATGAGCAATGCGCACCATG 59.336 50.000 14.90 14.07 41.64 3.66
1770 1900 2.581409 GAGCAATGCGCACCATGC 60.581 61.111 27.70 27.70 46.13 4.06
1792 1947 1.594293 CGCCGCCGGAAGATGTAAT 60.594 57.895 7.68 0.00 0.00 1.89
1793 1948 1.157870 CGCCGCCGGAAGATGTAATT 61.158 55.000 7.68 0.00 0.00 1.40
1794 1949 1.021968 GCCGCCGGAAGATGTAATTT 58.978 50.000 7.68 0.00 0.00 1.82
1795 1950 1.268539 GCCGCCGGAAGATGTAATTTG 60.269 52.381 7.68 0.00 0.00 2.32
1796 1951 2.285083 CCGCCGGAAGATGTAATTTGA 58.715 47.619 5.05 0.00 0.00 2.69
1797 1952 2.031683 CCGCCGGAAGATGTAATTTGAC 59.968 50.000 5.05 0.00 0.00 3.18
1798 1953 2.675844 CGCCGGAAGATGTAATTTGACA 59.324 45.455 5.05 0.00 0.00 3.58
1799 1954 3.126171 CGCCGGAAGATGTAATTTGACAA 59.874 43.478 5.05 0.00 31.83 3.18
1800 1955 4.412207 GCCGGAAGATGTAATTTGACAAC 58.588 43.478 5.05 0.00 31.83 3.32
1801 1956 4.674362 GCCGGAAGATGTAATTTGACAACC 60.674 45.833 5.05 0.00 31.83 3.77
1802 1957 4.142469 CCGGAAGATGTAATTTGACAACCC 60.142 45.833 0.00 0.00 31.83 4.11
1824 1979 1.143889 GGATGGGATGGAAGGGAAGTC 59.856 57.143 0.00 0.00 0.00 3.01
1829 1984 1.910580 GATGGAAGGGAAGTCCGCCA 61.911 60.000 7.42 7.42 44.72 5.69
1832 1987 1.376037 GAAGGGAAGTCCGCCACAG 60.376 63.158 0.00 0.00 41.52 3.66
1838 1993 4.996434 AGTCCGCCACAGCAGCAC 62.996 66.667 0.00 0.00 39.83 4.40
1844 1999 3.705638 CCACAGCAGCACGACGTG 61.706 66.667 23.43 23.43 36.51 4.49
1859 2014 3.431725 GTGCCCGTTGCTGCCTAC 61.432 66.667 0.00 0.00 42.00 3.18
1860 2015 3.947459 TGCCCGTTGCTGCCTACA 61.947 61.111 0.00 0.00 42.00 2.74
1872 2027 1.043116 TGCCTACAGATCCCCACTCG 61.043 60.000 0.00 0.00 0.00 4.18
1873 2028 1.043673 GCCTACAGATCCCCACTCGT 61.044 60.000 0.00 0.00 0.00 4.18
1874 2029 1.486211 CCTACAGATCCCCACTCGTT 58.514 55.000 0.00 0.00 0.00 3.85
1875 2030 1.137086 CCTACAGATCCCCACTCGTTG 59.863 57.143 0.00 0.00 0.00 4.10
1876 2031 1.137086 CTACAGATCCCCACTCGTTGG 59.863 57.143 0.00 0.00 46.47 3.77
1893 2048 2.586792 GAGCATCTCCAAGGGCGT 59.413 61.111 0.00 0.00 0.00 5.68
1894 2049 1.078143 GAGCATCTCCAAGGGCGTT 60.078 57.895 0.00 0.00 0.00 4.84
1895 2050 0.678048 GAGCATCTCCAAGGGCGTTT 60.678 55.000 0.00 0.00 0.00 3.60
1896 2051 0.251341 AGCATCTCCAAGGGCGTTTT 60.251 50.000 0.00 0.00 0.00 2.43
1897 2052 0.603065 GCATCTCCAAGGGCGTTTTT 59.397 50.000 0.00 0.00 0.00 1.94
1898 2053 1.816224 GCATCTCCAAGGGCGTTTTTA 59.184 47.619 0.00 0.00 0.00 1.52
1899 2054 2.159379 GCATCTCCAAGGGCGTTTTTAG 60.159 50.000 0.00 0.00 0.00 1.85
1900 2055 3.343617 CATCTCCAAGGGCGTTTTTAGA 58.656 45.455 0.00 0.00 0.00 2.10
1901 2056 2.774687 TCTCCAAGGGCGTTTTTAGAC 58.225 47.619 0.00 0.00 0.00 2.59
1902 2057 1.463444 CTCCAAGGGCGTTTTTAGACG 59.537 52.381 0.00 0.00 45.40 4.18
1903 2058 1.070445 TCCAAGGGCGTTTTTAGACGA 59.930 47.619 1.15 0.00 45.47 4.20
1904 2059 1.874872 CCAAGGGCGTTTTTAGACGAA 59.125 47.619 1.15 0.00 45.47 3.85
1905 2060 2.291190 CCAAGGGCGTTTTTAGACGAAA 59.709 45.455 1.15 0.00 45.47 3.46
1906 2061 3.243134 CCAAGGGCGTTTTTAGACGAAAA 60.243 43.478 1.15 0.00 45.47 2.29
1907 2062 4.352887 CAAGGGCGTTTTTAGACGAAAAA 58.647 39.130 2.49 2.49 45.47 1.94
1908 2063 4.841443 AGGGCGTTTTTAGACGAAAAAT 57.159 36.364 9.07 0.00 46.15 1.82
1909 2064 5.945466 AGGGCGTTTTTAGACGAAAAATA 57.055 34.783 9.07 0.00 46.15 1.40
1910 2065 5.934921 AGGGCGTTTTTAGACGAAAAATAG 58.065 37.500 9.07 8.01 46.15 1.73
1912 2067 4.259046 GGCGTTTTTAGACGAAAAATAGCG 59.741 41.667 19.68 14.95 46.15 4.26
1913 2068 4.259046 GCGTTTTTAGACGAAAAATAGCGG 59.741 41.667 9.07 0.58 46.15 5.52
1914 2069 4.259046 CGTTTTTAGACGAAAAATAGCGGC 59.741 41.667 9.07 0.00 46.15 6.53
1915 2070 5.388111 GTTTTTAGACGAAAAATAGCGGCT 58.612 37.500 7.98 7.98 46.15 5.52
1916 2071 4.852609 TTTAGACGAAAAATAGCGGCTC 57.147 40.909 5.39 0.00 43.52 4.70
1917 2072 2.674796 AGACGAAAAATAGCGGCTCT 57.325 45.000 5.39 0.00 43.52 4.09
1924 2097 1.032114 AAATAGCGGCTCTTGTGGGC 61.032 55.000 5.39 0.00 0.00 5.36
1930 2103 2.743928 GCTCTTGTGGGCCTGTCG 60.744 66.667 4.53 0.00 0.00 4.35
1944 2117 1.261619 CCTGTCGGCGATAATTTGAGC 59.738 52.381 14.79 0.00 0.00 4.26
1946 2119 0.928229 GTCGGCGATAATTTGAGCGT 59.072 50.000 14.79 0.00 0.00 5.07
1947 2120 0.927537 TCGGCGATAATTTGAGCGTG 59.072 50.000 4.99 0.00 0.00 5.34
1948 2121 0.927537 CGGCGATAATTTGAGCGTGA 59.072 50.000 0.00 0.00 0.00 4.35
1951 2124 1.261619 GCGATAATTTGAGCGTGAGGG 59.738 52.381 0.00 0.00 0.00 4.30
1952 2125 2.550978 CGATAATTTGAGCGTGAGGGT 58.449 47.619 0.00 0.00 0.00 4.34
1955 2128 1.247567 AATTTGAGCGTGAGGGTTGG 58.752 50.000 0.00 0.00 0.00 3.77
1956 2129 0.400213 ATTTGAGCGTGAGGGTTGGA 59.600 50.000 0.00 0.00 0.00 3.53
1957 2130 0.181587 TTTGAGCGTGAGGGTTGGAA 59.818 50.000 0.00 0.00 0.00 3.53
1958 2131 0.400213 TTGAGCGTGAGGGTTGGAAT 59.600 50.000 0.00 0.00 0.00 3.01
1959 2132 0.321564 TGAGCGTGAGGGTTGGAATG 60.322 55.000 0.00 0.00 0.00 2.67
1964 2137 2.941415 GCGTGAGGGTTGGAATGATTCT 60.941 50.000 5.03 0.00 0.00 2.40
1965 2138 2.939103 CGTGAGGGTTGGAATGATTCTC 59.061 50.000 5.03 0.00 0.00 2.87
1967 2140 3.944015 GTGAGGGTTGGAATGATTCTCAG 59.056 47.826 5.03 0.00 31.57 3.35
1969 2142 2.579860 AGGGTTGGAATGATTCTCAGCT 59.420 45.455 5.03 0.00 0.00 4.24
1970 2143 2.686915 GGGTTGGAATGATTCTCAGCTG 59.313 50.000 7.63 7.63 0.00 4.24
1972 2145 3.350833 GTTGGAATGATTCTCAGCTGGT 58.649 45.455 15.13 0.00 0.00 4.00
1973 2146 3.272574 TGGAATGATTCTCAGCTGGTC 57.727 47.619 15.13 8.00 0.00 4.02
1974 2147 2.842496 TGGAATGATTCTCAGCTGGTCT 59.158 45.455 15.13 0.00 0.00 3.85
1975 2148 3.118482 TGGAATGATTCTCAGCTGGTCTC 60.118 47.826 15.13 6.70 0.00 3.36
1976 2149 3.134442 GGAATGATTCTCAGCTGGTCTCT 59.866 47.826 15.13 0.00 0.00 3.10
1977 2150 3.823281 ATGATTCTCAGCTGGTCTCTG 57.177 47.619 15.13 0.00 0.00 3.35
1978 2151 2.812658 TGATTCTCAGCTGGTCTCTGA 58.187 47.619 15.13 0.43 38.16 3.27
1983 2156 1.387539 TCAGCTGGTCTCTGAGATCG 58.612 55.000 15.13 7.88 35.81 3.69
1985 2158 0.682532 AGCTGGTCTCTGAGATCGCA 60.683 55.000 25.29 0.00 30.89 5.10
1986 2159 0.527385 GCTGGTCTCTGAGATCGCAC 60.527 60.000 21.43 8.67 29.63 5.34
1987 2160 0.102120 CTGGTCTCTGAGATCGCACC 59.898 60.000 11.07 8.01 0.00 5.01
1990 2163 1.634702 GTCTCTGAGATCGCACCAAC 58.365 55.000 11.07 0.00 0.00 3.77
1994 3780 1.550072 TCTGAGATCGCACCAACATGA 59.450 47.619 0.00 0.00 0.00 3.07
1995 3781 1.931841 CTGAGATCGCACCAACATGAG 59.068 52.381 0.00 0.00 0.00 2.90
1996 3782 0.654683 GAGATCGCACCAACATGAGC 59.345 55.000 0.00 0.00 0.00 4.26
2003 3789 1.987770 GCACCAACATGAGCGATTTTG 59.012 47.619 0.00 0.00 0.00 2.44
2011 3797 7.042791 ACCAACATGAGCGATTTTGTTTAAAAG 60.043 33.333 0.00 0.00 39.01 2.27
2012 3798 6.452244 ACATGAGCGATTTTGTTTAAAAGC 57.548 33.333 0.00 0.00 39.01 3.51
2014 3800 4.303282 TGAGCGATTTTGTTTAAAAGCCC 58.697 39.130 0.00 0.00 38.59 5.19
2016 3802 4.698575 AGCGATTTTGTTTAAAAGCCCAA 58.301 34.783 0.00 0.00 38.59 4.12
2017 3803 5.304778 AGCGATTTTGTTTAAAAGCCCAAT 58.695 33.333 0.00 0.00 38.59 3.16
2019 3805 6.073276 AGCGATTTTGTTTAAAAGCCCAATTC 60.073 34.615 0.00 0.00 38.59 2.17
2020 3806 6.295857 CGATTTTGTTTAAAAGCCCAATTCG 58.704 36.000 0.00 0.00 38.59 3.34
2021 3807 6.144724 CGATTTTGTTTAAAAGCCCAATTCGA 59.855 34.615 12.11 0.00 38.59 3.71
2023 3809 6.777526 TTTGTTTAAAAGCCCAATTCGATG 57.222 33.333 0.00 0.00 0.00 3.84
2029 3815 7.826260 TTAAAAGCCCAATTCGATGAAATTC 57.174 32.000 0.00 0.00 0.00 2.17
2030 3816 5.404466 AAAGCCCAATTCGATGAAATTCA 57.596 34.783 0.00 0.00 0.00 2.57
2031 3817 4.644103 AGCCCAATTCGATGAAATTCAG 57.356 40.909 1.10 0.00 0.00 3.02
2033 3819 3.429272 GCCCAATTCGATGAAATTCAGCA 60.429 43.478 11.91 0.00 31.10 4.41
2040 3826 9.895894 CAATTCGATGAAATTCAGCAAATTTAG 57.104 29.630 11.91 0.00 45.47 1.85
2041 3827 9.859427 AATTCGATGAAATTCAGCAAATTTAGA 57.141 25.926 11.91 0.00 45.47 2.10
2042 3828 8.673626 TTCGATGAAATTCAGCAAATTTAGAC 57.326 30.769 11.91 4.50 45.47 2.59
2044 3830 6.960992 CGATGAAATTCAGCAAATTTAGACGA 59.039 34.615 11.91 0.00 45.47 4.20
2053 3839 8.958119 TCAGCAAATTTAGACGAAATATAGGT 57.042 30.769 0.00 0.00 36.71 3.08
2054 3840 8.826710 TCAGCAAATTTAGACGAAATATAGGTG 58.173 33.333 0.00 10.41 36.71 4.00
2123 4010 3.802948 AACTACTCCTAGTTCATGCCG 57.197 47.619 0.00 0.00 38.63 5.69
2124 4011 3.014304 ACTACTCCTAGTTCATGCCGA 57.986 47.619 0.00 0.00 27.62 5.54
2126 4013 1.115467 ACTCCTAGTTCATGCCGAGG 58.885 55.000 5.40 5.40 0.00 4.63
2127 4014 1.342076 ACTCCTAGTTCATGCCGAGGA 60.342 52.381 11.59 11.59 35.06 3.71
2129 4016 1.115467 CCTAGTTCATGCCGAGGAGT 58.885 55.000 5.74 0.00 0.00 3.85
2132 4019 3.132289 CCTAGTTCATGCCGAGGAGTTTA 59.868 47.826 5.74 0.00 0.00 2.01
2133 4020 3.914426 AGTTCATGCCGAGGAGTTTAT 57.086 42.857 0.00 0.00 0.00 1.40
2135 4022 4.950050 AGTTCATGCCGAGGAGTTTATAG 58.050 43.478 0.00 0.00 0.00 1.31
2139 4026 4.039245 TCATGCCGAGGAGTTTATAGAAGG 59.961 45.833 0.00 0.00 0.00 3.46
2140 4027 3.371965 TGCCGAGGAGTTTATAGAAGGT 58.628 45.455 0.00 0.00 0.00 3.50
2141 4028 3.132289 TGCCGAGGAGTTTATAGAAGGTG 59.868 47.826 0.00 0.00 0.00 4.00
2142 4029 3.492829 GCCGAGGAGTTTATAGAAGGTGG 60.493 52.174 0.00 0.00 0.00 4.61
2144 4031 4.441634 CCGAGGAGTTTATAGAAGGTGGTG 60.442 50.000 0.00 0.00 0.00 4.17
2145 4032 4.159879 CGAGGAGTTTATAGAAGGTGGTGT 59.840 45.833 0.00 0.00 0.00 4.16
2146 4033 5.359009 CGAGGAGTTTATAGAAGGTGGTGTA 59.641 44.000 0.00 0.00 0.00 2.90
2147 4034 6.459848 CGAGGAGTTTATAGAAGGTGGTGTAG 60.460 46.154 0.00 0.00 0.00 2.74
2148 4035 6.262207 AGGAGTTTATAGAAGGTGGTGTAGT 58.738 40.000 0.00 0.00 0.00 2.73
2149 4036 6.380560 AGGAGTTTATAGAAGGTGGTGTAGTC 59.619 42.308 0.00 0.00 0.00 2.59
2150 4037 6.205101 AGTTTATAGAAGGTGGTGTAGTCG 57.795 41.667 0.00 0.00 0.00 4.18
2151 4038 5.713861 AGTTTATAGAAGGTGGTGTAGTCGT 59.286 40.000 0.00 0.00 0.00 4.34
2152 4039 5.571784 TTATAGAAGGTGGTGTAGTCGTG 57.428 43.478 0.00 0.00 0.00 4.35
2154 4041 0.669625 GAAGGTGGTGTAGTCGTGGC 60.670 60.000 0.00 0.00 0.00 5.01
2157 4044 2.027625 GTGGTGTAGTCGTGGCTGC 61.028 63.158 0.00 0.00 0.00 5.25
2158 4045 2.434359 GGTGTAGTCGTGGCTGCC 60.434 66.667 12.87 12.87 0.00 4.85
2159 4046 2.809601 GTGTAGTCGTGGCTGCCG 60.810 66.667 14.98 2.78 0.00 5.69
2160 4047 3.299977 TGTAGTCGTGGCTGCCGT 61.300 61.111 14.98 0.00 0.00 5.68
2161 4048 2.048503 GTAGTCGTGGCTGCCGTT 60.049 61.111 14.98 0.00 0.00 4.44
2162 4049 2.048597 TAGTCGTGGCTGCCGTTG 60.049 61.111 14.98 6.23 0.00 4.10
2164 4051 2.758770 TAGTCGTGGCTGCCGTTGTC 62.759 60.000 14.98 4.12 0.00 3.18
2167 4054 3.712881 GTGGCTGCCGTTGTCGTC 61.713 66.667 14.98 0.00 35.01 4.20
2172 4059 4.673298 TGCCGTTGTCGTCGCCAT 62.673 61.111 0.00 0.00 35.01 4.40
2173 4060 3.849953 GCCGTTGTCGTCGCCATC 61.850 66.667 0.00 0.00 35.01 3.51
2174 4061 3.541831 CCGTTGTCGTCGCCATCG 61.542 66.667 0.04 0.04 35.01 3.84
2175 4062 4.191485 CGTTGTCGTCGCCATCGC 62.191 66.667 0.00 0.00 35.26 4.58
2176 4063 2.809601 GTTGTCGTCGCCATCGCT 60.810 61.111 0.00 0.00 35.26 4.93
2177 4064 2.048597 TTGTCGTCGCCATCGCTT 60.049 55.556 0.00 0.00 35.26 4.68
2187 4074 2.665777 CCATCGCTTGGTGTAGTCG 58.334 57.895 0.00 0.00 40.99 4.18
2188 4075 0.108804 CCATCGCTTGGTGTAGTCGT 60.109 55.000 0.00 0.00 40.99 4.34
2189 4076 0.992072 CATCGCTTGGTGTAGTCGTG 59.008 55.000 0.00 0.00 0.00 4.35
2190 4077 0.108804 ATCGCTTGGTGTAGTCGTGG 60.109 55.000 0.00 0.00 0.00 4.94
2191 4078 2.380410 CGCTTGGTGTAGTCGTGGC 61.380 63.158 0.00 0.00 0.00 5.01
2192 4079 1.004918 GCTTGGTGTAGTCGTGGCT 60.005 57.895 0.00 0.00 0.00 4.75
2194 4081 1.992170 CTTGGTGTAGTCGTGGCTAC 58.008 55.000 4.71 4.71 41.13 3.58
2197 4084 0.822164 GGTGTAGTCGTGGCTACCAT 59.178 55.000 9.00 0.00 40.29 3.55
2200 4087 3.490419 GGTGTAGTCGTGGCTACCATAAG 60.490 52.174 9.00 0.00 40.29 1.73
2201 4088 3.379372 GTGTAGTCGTGGCTACCATAAGA 59.621 47.826 9.00 0.00 40.29 2.10
2203 4090 2.032620 AGTCGTGGCTACCATAAGAGG 58.967 52.381 0.00 0.00 35.28 3.69
2204 4091 0.750850 TCGTGGCTACCATAAGAGGC 59.249 55.000 0.00 0.00 35.28 4.70
2205 4092 0.753262 CGTGGCTACCATAAGAGGCT 59.247 55.000 0.00 0.00 38.96 4.58
2206 4093 1.269831 CGTGGCTACCATAAGAGGCTC 60.270 57.143 6.34 6.34 38.96 4.70
2207 4094 2.043227 GTGGCTACCATAAGAGGCTCT 58.957 52.381 12.24 12.24 38.96 4.09
2208 4095 2.436173 GTGGCTACCATAAGAGGCTCTT 59.564 50.000 30.67 30.67 40.35 2.85
2209 4096 2.700897 TGGCTACCATAAGAGGCTCTTC 59.299 50.000 31.69 15.95 37.89 2.87
2211 4098 3.326297 GGCTACCATAAGAGGCTCTTCAT 59.674 47.826 31.69 19.70 37.89 2.57
2212 4099 4.314121 GCTACCATAAGAGGCTCTTCATG 58.686 47.826 31.69 27.14 37.89 3.07
2214 4101 2.158696 ACCATAAGAGGCTCTTCATGGC 60.159 50.000 35.26 10.28 37.89 4.40
2220 4107 3.509517 GGCTCTTCATGGCCTTCAT 57.490 52.632 3.32 0.00 44.48 2.57
2227 4114 3.202548 CATGGCCTTCATGCTCCTT 57.797 52.632 3.32 0.00 45.58 3.36
2228 4115 1.030457 CATGGCCTTCATGCTCCTTC 58.970 55.000 3.32 0.00 45.58 3.46
2230 4117 0.322816 TGGCCTTCATGCTCCTTCAC 60.323 55.000 3.32 0.00 0.00 3.18
2232 4119 1.093159 GCCTTCATGCTCCTTCACAG 58.907 55.000 0.00 0.00 0.00 3.66
2233 4120 1.747709 CCTTCATGCTCCTTCACAGG 58.252 55.000 0.00 0.00 42.50 4.00
2235 4122 1.280133 CTTCATGCTCCTTCACAGGGA 59.720 52.381 0.00 0.00 41.25 4.20
2240 4127 1.904032 CTCCTTCACAGGGAGGAGC 59.096 63.158 6.13 0.00 44.71 4.70
2241 4128 1.613630 TCCTTCACAGGGAGGAGCC 60.614 63.158 0.00 0.00 41.25 4.70
2242 4129 1.614824 CCTTCACAGGGAGGAGCCT 60.615 63.158 0.00 0.00 36.36 4.58
2243 4130 1.621672 CCTTCACAGGGAGGAGCCTC 61.622 65.000 8.03 8.03 42.04 4.70
2255 4142 2.517650 GGAGCCTCCTACTTCGATTG 57.482 55.000 2.64 0.00 32.53 2.67
2257 4144 2.223852 GGAGCCTCCTACTTCGATTGAC 60.224 54.545 2.64 0.00 32.53 3.18
2258 4145 1.757699 AGCCTCCTACTTCGATTGACC 59.242 52.381 0.00 0.00 0.00 4.02
2260 4147 2.482142 GCCTCCTACTTCGATTGACCAG 60.482 54.545 0.00 0.00 0.00 4.00
2261 4148 2.101582 CCTCCTACTTCGATTGACCAGG 59.898 54.545 0.00 0.00 0.00 4.45
2262 4149 2.761208 CTCCTACTTCGATTGACCAGGT 59.239 50.000 0.00 0.00 0.00 4.00
2263 4150 2.496070 TCCTACTTCGATTGACCAGGTG 59.504 50.000 0.00 0.00 0.00 4.00
2264 4151 2.418746 CCTACTTCGATTGACCAGGTGG 60.419 54.545 0.00 0.00 42.17 4.61
2267 4154 0.613260 TTCGATTGACCAGGTGGGAG 59.387 55.000 0.00 0.00 41.15 4.30
2268 4155 0.544357 TCGATTGACCAGGTGGGAGT 60.544 55.000 0.00 0.00 41.15 3.85
2269 4156 0.391661 CGATTGACCAGGTGGGAGTG 60.392 60.000 0.00 0.00 41.15 3.51
2270 4157 0.035056 GATTGACCAGGTGGGAGTGG 60.035 60.000 0.00 0.00 41.15 4.00
2271 4158 2.142292 ATTGACCAGGTGGGAGTGGC 62.142 60.000 0.00 0.00 41.15 5.01
2272 4159 4.035102 GACCAGGTGGGAGTGGCC 62.035 72.222 0.00 0.00 41.15 5.36
2309 4196 3.814268 CGGCCGCCCTTGTTGATG 61.814 66.667 14.67 0.00 0.00 3.07
2310 4197 2.361104 GGCCGCCCTTGTTGATGA 60.361 61.111 0.00 0.00 0.00 2.92
2311 4198 2.700773 GGCCGCCCTTGTTGATGAC 61.701 63.158 0.00 0.00 0.00 3.06
2312 4199 3.039202 GCCGCCCTTGTTGATGACG 62.039 63.158 0.00 0.00 0.00 4.35
2313 4200 1.375396 CCGCCCTTGTTGATGACGA 60.375 57.895 0.00 0.00 0.00 4.20
2314 4201 0.744414 CCGCCCTTGTTGATGACGAT 60.744 55.000 0.00 0.00 0.00 3.73
2315 4202 0.374758 CGCCCTTGTTGATGACGATG 59.625 55.000 0.00 0.00 0.00 3.84
2316 4203 0.099436 GCCCTTGTTGATGACGATGC 59.901 55.000 0.00 0.00 0.00 3.91
2317 4204 0.734889 CCCTTGTTGATGACGATGCC 59.265 55.000 0.00 0.00 0.00 4.40
2318 4205 0.374758 CCTTGTTGATGACGATGCCG 59.625 55.000 0.00 0.00 42.50 5.69
2343 4230 4.724602 TGTGCTGAGCGGCGTCTC 62.725 66.667 19.62 19.62 34.52 3.36
2365 4252 4.785453 GGCTCGGGCTTGACAGGG 62.785 72.222 7.48 0.00 38.73 4.45
2366 4253 3.706373 GCTCGGGCTTGACAGGGA 61.706 66.667 0.00 0.00 35.22 4.20
2367 4254 2.581354 CTCGGGCTTGACAGGGAG 59.419 66.667 0.00 0.00 0.00 4.30
2368 4255 3.003173 TCGGGCTTGACAGGGAGG 61.003 66.667 0.00 0.00 0.00 4.30
2369 4256 3.003173 CGGGCTTGACAGGGAGGA 61.003 66.667 0.00 0.00 0.00 3.71
2370 4257 2.993853 GGGCTTGACAGGGAGGAG 59.006 66.667 0.00 0.00 0.00 3.69
2371 4258 1.920835 GGGCTTGACAGGGAGGAGT 60.921 63.158 0.00 0.00 0.00 3.85
2372 4259 1.599576 GGCTTGACAGGGAGGAGTC 59.400 63.158 0.00 0.00 35.37 3.36
2373 4260 0.907230 GGCTTGACAGGGAGGAGTCT 60.907 60.000 0.00 0.00 35.81 3.24
2374 4261 0.534873 GCTTGACAGGGAGGAGTCTC 59.465 60.000 0.00 0.00 39.25 3.36
2375 4262 0.814457 CTTGACAGGGAGGAGTCTCG 59.186 60.000 0.00 0.00 40.85 4.04
2380 4267 3.844090 GGGAGGAGTCTCGCTGGC 61.844 72.222 3.66 0.00 45.90 4.85
2401 4288 3.151022 GACCCAGAGGAGCGGGAG 61.151 72.222 0.45 0.00 46.34 4.30
2402 4289 3.966930 GACCCAGAGGAGCGGGAGT 62.967 68.421 0.45 0.00 46.34 3.85
2404 4291 3.151022 CCAGAGGAGCGGGAGTCC 61.151 72.222 0.00 0.00 33.08 3.85
2418 4305 2.435586 GTCCGAGGACGACGAGGA 60.436 66.667 6.51 0.00 42.66 3.71
2419 4306 1.818785 GTCCGAGGACGACGAGGAT 60.819 63.158 6.51 0.00 42.66 3.24
2420 4307 1.818363 TCCGAGGACGACGAGGATG 60.818 63.158 0.00 0.00 42.66 3.51
2423 4310 3.471244 GAGGACGACGAGGATGGCG 62.471 68.421 0.00 0.00 0.00 5.69
2424 4311 3.823330 GGACGACGAGGATGGCGT 61.823 66.667 0.00 0.00 45.79 5.68
2426 4313 3.338126 GACGACGAGGATGGCGTGT 62.338 63.158 0.00 0.00 42.77 4.49
2427 4314 2.579787 CGACGAGGATGGCGTGTC 60.580 66.667 0.00 0.00 42.77 3.67
2439 4326 4.402192 CGTGTCCATACGCCTCAG 57.598 61.111 0.00 0.00 37.24 3.35
2440 4327 1.878522 CGTGTCCATACGCCTCAGC 60.879 63.158 0.00 0.00 37.24 4.26
2451 4338 3.073735 CCTCAGCGTCCAGGAGCT 61.074 66.667 7.42 7.42 45.74 4.09
2453 4340 1.153667 CTCAGCGTCCAGGAGCTTC 60.154 63.158 9.93 0.00 42.52 3.86
2454 4341 2.125350 CAGCGTCCAGGAGCTTCC 60.125 66.667 9.93 0.00 42.52 3.46
2455 4342 3.394836 AGCGTCCAGGAGCTTCCC 61.395 66.667 7.42 0.00 41.52 3.97
2456 4343 4.475135 GCGTCCAGGAGCTTCCCC 62.475 72.222 0.00 0.00 37.19 4.81
2458 4345 3.787001 GTCCAGGAGCTTCCCCGG 61.787 72.222 0.00 0.00 37.19 5.73
2476 4586 4.840005 CGGCGGAAGAAGGAGGGC 62.840 72.222 0.00 0.00 0.00 5.19
2477 4587 4.840005 GGCGGAAGAAGGAGGGCG 62.840 72.222 0.00 0.00 0.00 6.13
2479 4589 4.840005 CGGAAGAAGGAGGGCGCC 62.840 72.222 21.18 21.18 0.00 6.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.989869 GTCCTTATTCTACAATAAAGCAAAGAC 57.010 33.333 0.00 0.00 34.64 3.01
19 20 4.382685 CCGGCTTCAAGTCCTTATTCTACA 60.383 45.833 0.00 0.00 0.00 2.74
46 47 1.408702 AGCATTGTGGTTGTTGTCACC 59.591 47.619 0.00 0.00 33.29 4.02
50 51 1.408702 GGACAGCATTGTGGTTGTTGT 59.591 47.619 0.00 0.00 40.60 3.32
84 86 7.039882 GGGAAAATAGAAACGATGAGTACTCA 58.960 38.462 27.07 27.07 44.59 3.41
93 95 5.827756 AGAAAGGGGGAAAATAGAAACGAT 58.172 37.500 0.00 0.00 0.00 3.73
129 131 7.038659 TGAAAAATGAAAAGCGAAAGAGGAAA 58.961 30.769 0.00 0.00 0.00 3.13
135 137 7.455447 ACACTTTGAAAAATGAAAAGCGAAAG 58.545 30.769 0.00 0.00 34.88 2.62
138 140 6.587990 TGAACACTTTGAAAAATGAAAAGCGA 59.412 30.769 0.00 0.00 34.88 4.93
141 143 8.594687 ACGATGAACACTTTGAAAAATGAAAAG 58.405 29.630 0.00 0.00 37.04 2.27
237 239 9.926158 TTTTCATACACATTGCATATTTTCACT 57.074 25.926 0.00 0.00 0.00 3.41
269 271 9.761504 ACATTGTTCAAATACATGTTTTGATGA 57.238 25.926 24.10 14.31 41.36 2.92
565 632 8.931775 TCACACACATTTGTACATGTTCTATAC 58.068 33.333 2.30 0.00 35.03 1.47
642 709 2.959707 GGTCTACAATCTGATCGGGACT 59.040 50.000 0.62 0.00 0.00 3.85
647 714 5.859114 CCTTTATCGGTCTACAATCTGATCG 59.141 44.000 0.00 0.00 38.06 3.69
650 717 4.202223 GGCCTTTATCGGTCTACAATCTGA 60.202 45.833 0.00 0.00 0.00 3.27
655 722 4.442472 GCTAAGGCCTTTATCGGTCTACAA 60.442 45.833 26.08 0.00 38.26 2.41
672 739 3.441572 CCTGTTTTGTCATCCAGCTAAGG 59.558 47.826 0.00 0.00 0.00 2.69
676 743 2.508526 GACCTGTTTTGTCATCCAGCT 58.491 47.619 0.00 0.00 32.91 4.24
716 783 1.489230 ACCCTCAAACCACTTCGAACT 59.511 47.619 0.00 0.00 0.00 3.01
720 787 1.566018 GCGACCCTCAAACCACTTCG 61.566 60.000 0.00 0.00 0.00 3.79
757 824 4.566545 TGGAGTATGTGTTTGTTGCTTG 57.433 40.909 0.00 0.00 0.00 4.01
758 825 6.886459 AGATATGGAGTATGTGTTTGTTGCTT 59.114 34.615 0.00 0.00 0.00 3.91
769 856 3.578716 CCGGGTCAAGATATGGAGTATGT 59.421 47.826 0.00 0.00 0.00 2.29
770 857 3.832490 TCCGGGTCAAGATATGGAGTATG 59.168 47.826 0.00 0.00 0.00 2.39
771 858 4.090090 CTCCGGGTCAAGATATGGAGTAT 58.910 47.826 0.00 0.00 38.51 2.12
772 859 3.497332 CTCCGGGTCAAGATATGGAGTA 58.503 50.000 0.00 0.00 38.51 2.59
773 860 2.320781 CTCCGGGTCAAGATATGGAGT 58.679 52.381 0.00 0.00 38.51 3.85
774 861 1.620819 CCTCCGGGTCAAGATATGGAG 59.379 57.143 0.00 0.00 42.07 3.86
790 877 0.741221 GAACGGCTGTGATGTCCTCC 60.741 60.000 0.00 0.00 0.00 4.30
800 893 1.301479 GAGGGAAACGAACGGCTGT 60.301 57.895 0.00 0.00 0.00 4.40
900 993 2.320587 CGCTGGACTGCTGTGGAAC 61.321 63.158 0.00 0.00 37.35 3.62
935 1037 5.379706 TTTGGTTGGTGATTTGGGATTTT 57.620 34.783 0.00 0.00 0.00 1.82
1362 1471 1.303236 CGGGTTGATGTTGGGCAGA 60.303 57.895 0.00 0.00 0.00 4.26
1490 1608 2.159707 GCAAAGCAAAGCTAATCGACGA 60.160 45.455 0.00 0.00 38.25 4.20
1504 1626 2.480037 CGATCACTGTTACAGCAAAGCA 59.520 45.455 12.80 0.00 34.37 3.91
1558 1685 1.729586 TTCCCTGGCAGTACAGAACT 58.270 50.000 14.43 0.00 40.97 3.01
1559 1686 2.561478 TTTCCCTGGCAGTACAGAAC 57.439 50.000 14.43 0.00 40.97 3.01
1560 1687 3.219281 GTTTTTCCCTGGCAGTACAGAA 58.781 45.455 14.43 7.95 40.97 3.02
1561 1688 2.173782 TGTTTTTCCCTGGCAGTACAGA 59.826 45.455 14.43 1.72 40.97 3.41
1562 1689 2.582052 TGTTTTTCCCTGGCAGTACAG 58.418 47.619 14.43 0.00 38.21 2.74
1563 1690 2.738587 TGTTTTTCCCTGGCAGTACA 57.261 45.000 14.43 4.95 0.00 2.90
1564 1691 4.600692 ATTTGTTTTTCCCTGGCAGTAC 57.399 40.909 14.43 2.45 0.00 2.73
1565 1692 4.651503 TGAATTTGTTTTTCCCTGGCAGTA 59.348 37.500 14.43 0.00 0.00 2.74
1566 1693 3.454082 TGAATTTGTTTTTCCCTGGCAGT 59.546 39.130 14.43 0.00 0.00 4.40
1607 1734 3.620488 GACAGGGCAGACAATTTGGATA 58.380 45.455 0.78 0.00 0.00 2.59
1608 1735 2.450476 GACAGGGCAGACAATTTGGAT 58.550 47.619 0.78 0.00 0.00 3.41
1609 1736 1.881925 CGACAGGGCAGACAATTTGGA 60.882 52.381 0.78 0.00 0.00 3.53
1619 1746 1.002468 CAAGAACAAACGACAGGGCAG 60.002 52.381 0.00 0.00 0.00 4.85
1623 1750 4.437390 GCCATATCAAGAACAAACGACAGG 60.437 45.833 0.00 0.00 0.00 4.00
1631 1758 5.476254 TGTCACATTGCCATATCAAGAACAA 59.524 36.000 0.00 0.00 0.00 2.83
1644 1771 3.012518 AGAGCACTTATGTCACATTGCC 58.987 45.455 8.97 2.38 0.00 4.52
1664 1791 4.020751 TCAAACAGATCTGAGTCTTCCCAG 60.021 45.833 29.27 6.66 0.00 4.45
1714 1842 7.687941 TTTACAACAAATTTTGCCTTTCCAA 57.312 28.000 9.04 0.00 0.00 3.53
1717 1845 8.119845 ACGAATTTACAACAAATTTTGCCTTTC 58.880 29.630 9.04 3.31 30.68 2.62
1724 1853 9.026074 ACGAATCACGAATTTACAACAAATTTT 57.974 25.926 0.00 0.00 45.77 1.82
1725 1854 8.568732 ACGAATCACGAATTTACAACAAATTT 57.431 26.923 0.00 0.00 45.77 1.82
1726 1855 9.834628 ATACGAATCACGAATTTACAACAAATT 57.165 25.926 0.00 0.00 45.77 1.82
1727 1856 9.272901 CATACGAATCACGAATTTACAACAAAT 57.727 29.630 0.00 0.00 45.77 2.32
1728 1857 8.496751 TCATACGAATCACGAATTTACAACAAA 58.503 29.630 0.00 0.00 45.77 2.83
1729 1858 8.019769 TCATACGAATCACGAATTTACAACAA 57.980 30.769 0.00 0.00 45.77 2.83
1732 1861 6.311690 TGCTCATACGAATCACGAATTTACAA 59.688 34.615 0.00 0.00 45.77 2.41
1735 1864 6.895607 TTGCTCATACGAATCACGAATTTA 57.104 33.333 0.00 0.00 45.77 1.40
1751 1881 1.435925 CATGGTGCGCATTGCTCAT 59.564 52.632 15.91 10.13 46.63 2.90
1773 1903 2.989055 ATTACATCTTCCGGCGGCGG 62.989 60.000 41.57 41.57 0.00 6.13
1774 1904 1.157870 AATTACATCTTCCGGCGGCG 61.158 55.000 26.12 26.12 0.00 6.46
1775 1905 1.021968 AAATTACATCTTCCGGCGGC 58.978 50.000 23.83 0.00 0.00 6.53
1786 1941 3.443145 TCCCGGGTTGTCAAATTACAT 57.557 42.857 22.86 0.00 0.00 2.29
1789 1944 2.729194 CCATCCCGGGTTGTCAAATTA 58.271 47.619 26.31 2.10 0.00 1.40
1792 1947 4.832741 CCATCCCGGGTTGTCAAA 57.167 55.556 26.31 4.45 0.00 2.69
1801 1956 2.833913 CCCTTCCATCCCATCCCGG 61.834 68.421 0.00 0.00 0.00 5.73
1802 1957 1.352622 TTCCCTTCCATCCCATCCCG 61.353 60.000 0.00 0.00 0.00 5.14
1844 1999 2.876368 ATCTGTAGGCAGCAACGGGC 62.876 60.000 0.00 0.00 42.29 6.13
1846 2001 0.811616 GGATCTGTAGGCAGCAACGG 60.812 60.000 0.00 0.00 42.29 4.44
1848 2003 0.464554 GGGGATCTGTAGGCAGCAAC 60.465 60.000 0.00 0.00 42.29 4.17
1849 2004 0.913934 TGGGGATCTGTAGGCAGCAA 60.914 55.000 0.00 0.00 42.29 3.91
1850 2005 1.306911 TGGGGATCTGTAGGCAGCA 60.307 57.895 0.00 0.00 42.29 4.41
1852 2007 0.755686 GAGTGGGGATCTGTAGGCAG 59.244 60.000 0.00 0.00 43.87 4.85
1853 2008 1.043116 CGAGTGGGGATCTGTAGGCA 61.043 60.000 0.00 0.00 0.00 4.75
1854 2009 1.043673 ACGAGTGGGGATCTGTAGGC 61.044 60.000 0.00 0.00 0.00 3.93
1858 2013 1.983224 CCAACGAGTGGGGATCTGT 59.017 57.895 0.00 0.00 44.64 3.41
1859 2014 4.941609 CCAACGAGTGGGGATCTG 57.058 61.111 0.00 0.00 44.64 2.90
1876 2031 0.678048 AAACGCCCTTGGAGATGCTC 60.678 55.000 0.00 0.00 0.00 4.26
1877 2032 0.251341 AAAACGCCCTTGGAGATGCT 60.251 50.000 0.00 0.00 0.00 3.79
1879 2034 3.127030 GTCTAAAAACGCCCTTGGAGATG 59.873 47.826 0.00 0.00 0.00 2.90
1880 2035 3.344515 GTCTAAAAACGCCCTTGGAGAT 58.655 45.455 0.00 0.00 0.00 2.75
1881 2036 2.774687 GTCTAAAAACGCCCTTGGAGA 58.225 47.619 0.00 0.00 0.00 3.71
1882 2037 1.463444 CGTCTAAAAACGCCCTTGGAG 59.537 52.381 0.00 0.00 35.64 3.86
1883 2038 1.070445 TCGTCTAAAAACGCCCTTGGA 59.930 47.619 0.00 0.00 42.31 3.53
1885 2040 3.612472 TTTCGTCTAAAAACGCCCTTG 57.388 42.857 0.00 0.00 42.31 3.61
1886 2041 4.635833 TTTTTCGTCTAAAAACGCCCTT 57.364 36.364 0.00 0.00 41.13 3.95
1887 2042 4.841443 ATTTTTCGTCTAAAAACGCCCT 57.159 36.364 0.00 0.00 46.88 5.19
1888 2043 4.556135 GCTATTTTTCGTCTAAAAACGCCC 59.444 41.667 0.00 0.00 46.88 6.13
1889 2044 4.259046 CGCTATTTTTCGTCTAAAAACGCC 59.741 41.667 10.33 0.00 46.88 5.68
1890 2045 4.259046 CCGCTATTTTTCGTCTAAAAACGC 59.741 41.667 0.00 3.72 46.88 4.84
1894 2049 4.933400 AGAGCCGCTATTTTTCGTCTAAAA 59.067 37.500 0.00 0.00 35.24 1.52
1895 2050 4.501071 AGAGCCGCTATTTTTCGTCTAAA 58.499 39.130 0.00 0.00 0.00 1.85
1896 2051 4.119442 AGAGCCGCTATTTTTCGTCTAA 57.881 40.909 0.00 0.00 0.00 2.10
1897 2052 3.795623 AGAGCCGCTATTTTTCGTCTA 57.204 42.857 0.00 0.00 0.00 2.59
1898 2053 2.673368 CAAGAGCCGCTATTTTTCGTCT 59.327 45.455 0.00 0.00 0.00 4.18
1899 2054 2.415512 ACAAGAGCCGCTATTTTTCGTC 59.584 45.455 0.00 0.00 0.00 4.20
1900 2055 2.159627 CACAAGAGCCGCTATTTTTCGT 59.840 45.455 0.00 0.00 0.00 3.85
1901 2056 2.476185 CCACAAGAGCCGCTATTTTTCG 60.476 50.000 0.00 0.00 0.00 3.46
1902 2057 2.159379 CCCACAAGAGCCGCTATTTTTC 60.159 50.000 0.00 0.00 0.00 2.29
1903 2058 1.818674 CCCACAAGAGCCGCTATTTTT 59.181 47.619 0.00 0.00 0.00 1.94
1904 2059 1.463674 CCCACAAGAGCCGCTATTTT 58.536 50.000 0.00 0.00 0.00 1.82
1905 2060 1.032114 GCCCACAAGAGCCGCTATTT 61.032 55.000 0.00 0.00 0.00 1.40
1906 2061 1.452108 GCCCACAAGAGCCGCTATT 60.452 57.895 0.00 0.00 0.00 1.73
1907 2062 2.190578 GCCCACAAGAGCCGCTAT 59.809 61.111 0.00 0.00 0.00 2.97
1908 2063 4.096003 GGCCCACAAGAGCCGCTA 62.096 66.667 0.00 0.00 39.87 4.26
1913 2068 2.743928 CGACAGGCCCACAAGAGC 60.744 66.667 0.00 0.00 0.00 4.09
1914 2069 2.046892 CCGACAGGCCCACAAGAG 60.047 66.667 0.00 0.00 0.00 2.85
1924 2097 1.261619 GCTCAAATTATCGCCGACAGG 59.738 52.381 0.00 0.00 41.62 4.00
1930 2103 1.261619 CCTCACGCTCAAATTATCGCC 59.738 52.381 0.00 0.00 0.00 5.54
1932 2105 2.550978 ACCCTCACGCTCAAATTATCG 58.449 47.619 0.00 0.00 0.00 2.92
1934 2107 3.016736 CCAACCCTCACGCTCAAATTAT 58.983 45.455 0.00 0.00 0.00 1.28
1936 2109 1.202879 TCCAACCCTCACGCTCAAATT 60.203 47.619 0.00 0.00 0.00 1.82
1937 2110 0.400213 TCCAACCCTCACGCTCAAAT 59.600 50.000 0.00 0.00 0.00 2.32
1938 2111 0.181587 TTCCAACCCTCACGCTCAAA 59.818 50.000 0.00 0.00 0.00 2.69
1939 2112 0.400213 ATTCCAACCCTCACGCTCAA 59.600 50.000 0.00 0.00 0.00 3.02
1940 2113 0.321564 CATTCCAACCCTCACGCTCA 60.322 55.000 0.00 0.00 0.00 4.26
1942 2115 0.620556 ATCATTCCAACCCTCACGCT 59.379 50.000 0.00 0.00 0.00 5.07
1943 2116 1.401905 GAATCATTCCAACCCTCACGC 59.598 52.381 0.00 0.00 0.00 5.34
1944 2117 2.939103 GAGAATCATTCCAACCCTCACG 59.061 50.000 0.00 0.00 33.17 4.35
1964 2137 1.387539 CGATCTCAGAGACCAGCTGA 58.612 55.000 17.39 0.00 39.90 4.26
1965 2138 0.248990 GCGATCTCAGAGACCAGCTG 60.249 60.000 6.78 6.78 34.71 4.24
1967 2140 0.527385 GTGCGATCTCAGAGACCAGC 60.527 60.000 0.91 9.25 0.00 4.85
1969 2142 0.611896 TGGTGCGATCTCAGAGACCA 60.612 55.000 0.91 2.87 0.00 4.02
1970 2143 0.532573 TTGGTGCGATCTCAGAGACC 59.467 55.000 0.91 0.00 0.00 3.85
1972 2145 1.256812 TGTTGGTGCGATCTCAGAGA 58.743 50.000 1.54 1.54 0.00 3.10
1973 2146 1.931841 CATGTTGGTGCGATCTCAGAG 59.068 52.381 0.00 0.00 0.00 3.35
1974 2147 1.550072 TCATGTTGGTGCGATCTCAGA 59.450 47.619 0.00 0.00 0.00 3.27
1975 2148 1.931841 CTCATGTTGGTGCGATCTCAG 59.068 52.381 0.00 0.00 0.00 3.35
1976 2149 2.008543 GCTCATGTTGGTGCGATCTCA 61.009 52.381 0.00 0.00 0.00 3.27
1977 2150 0.654683 GCTCATGTTGGTGCGATCTC 59.345 55.000 0.00 0.00 0.00 2.75
1978 2151 2.772739 GCTCATGTTGGTGCGATCT 58.227 52.632 0.00 0.00 0.00 2.75
1983 2156 1.987770 CAAAATCGCTCATGTTGGTGC 59.012 47.619 0.00 0.00 0.00 5.01
1985 2158 4.320608 AAACAAAATCGCTCATGTTGGT 57.679 36.364 0.00 0.00 34.27 3.67
1986 2159 6.761731 TTTAAACAAAATCGCTCATGTTGG 57.238 33.333 0.00 0.00 34.27 3.77
1987 2160 6.787043 GCTTTTAAACAAAATCGCTCATGTTG 59.213 34.615 0.00 0.00 36.23 3.33
1990 2163 5.163963 GGGCTTTTAAACAAAATCGCTCATG 60.164 40.000 0.00 0.00 29.41 3.07
1994 3780 4.329462 TGGGCTTTTAAACAAAATCGCT 57.671 36.364 0.00 0.00 0.00 4.93
1995 3781 5.605564 ATTGGGCTTTTAAACAAAATCGC 57.394 34.783 0.00 0.00 0.00 4.58
1996 3782 6.144724 TCGAATTGGGCTTTTAAACAAAATCG 59.855 34.615 14.70 14.70 37.47 3.34
2001 3787 6.090483 TCATCGAATTGGGCTTTTAAACAA 57.910 33.333 0.00 0.00 0.00 2.83
2003 3789 7.595311 ATTTCATCGAATTGGGCTTTTAAAC 57.405 32.000 0.00 0.00 0.00 2.01
2011 3797 3.118542 GCTGAATTTCATCGAATTGGGC 58.881 45.455 0.00 0.00 29.75 5.36
2012 3798 4.374843 TGCTGAATTTCATCGAATTGGG 57.625 40.909 0.00 0.00 29.75 4.12
2014 3800 9.895894 CTAAATTTGCTGAATTTCATCGAATTG 57.104 29.630 20.95 11.28 42.81 2.32
2016 3802 9.294030 GTCTAAATTTGCTGAATTTCATCGAAT 57.706 29.630 12.53 9.07 42.81 3.34
2017 3803 7.481483 CGTCTAAATTTGCTGAATTTCATCGAA 59.519 33.333 12.53 2.61 42.81 3.71
2019 3805 6.960992 TCGTCTAAATTTGCTGAATTTCATCG 59.039 34.615 12.53 13.81 42.81 3.84
2020 3806 8.673626 TTCGTCTAAATTTGCTGAATTTCATC 57.326 30.769 12.53 0.00 42.81 2.92
2021 3807 9.643693 ATTTCGTCTAAATTTGCTGAATTTCAT 57.356 25.926 12.53 0.00 42.81 2.57
2029 3815 8.826710 TCACCTATATTTCGTCTAAATTTGCTG 58.173 33.333 0.00 0.00 38.71 4.41
2030 3816 8.958119 TCACCTATATTTCGTCTAAATTTGCT 57.042 30.769 0.00 0.00 38.71 3.91
2104 3991 2.952978 CTCGGCATGAACTAGGAGTAGT 59.047 50.000 0.00 0.00 41.61 2.73
2106 3993 2.092049 TCCTCGGCATGAACTAGGAGTA 60.092 50.000 0.00 0.00 32.60 2.59
2108 3995 1.339610 CTCCTCGGCATGAACTAGGAG 59.660 57.143 17.90 17.90 45.37 3.69
2109 3996 1.342076 ACTCCTCGGCATGAACTAGGA 60.342 52.381 0.00 3.95 35.14 2.94
2110 3997 1.115467 ACTCCTCGGCATGAACTAGG 58.885 55.000 0.00 0.00 0.00 3.02
2111 3998 2.969628 AACTCCTCGGCATGAACTAG 57.030 50.000 0.00 0.00 0.00 2.57
2112 3999 5.831525 TCTATAAACTCCTCGGCATGAACTA 59.168 40.000 0.00 0.00 0.00 2.24
2114 4001 4.945246 TCTATAAACTCCTCGGCATGAAC 58.055 43.478 0.00 0.00 0.00 3.18
2115 4002 5.453339 CCTTCTATAAACTCCTCGGCATGAA 60.453 44.000 0.00 0.00 0.00 2.57
2116 4003 4.039245 CCTTCTATAAACTCCTCGGCATGA 59.961 45.833 0.00 0.00 0.00 3.07
2117 4004 4.202264 ACCTTCTATAAACTCCTCGGCATG 60.202 45.833 0.00 0.00 0.00 4.06
2119 4006 3.132289 CACCTTCTATAAACTCCTCGGCA 59.868 47.826 0.00 0.00 0.00 5.69
2120 4007 3.492829 CCACCTTCTATAAACTCCTCGGC 60.493 52.174 0.00 0.00 0.00 5.54
2121 4008 3.705072 ACCACCTTCTATAAACTCCTCGG 59.295 47.826 0.00 0.00 0.00 4.63
2122 4009 4.159879 ACACCACCTTCTATAAACTCCTCG 59.840 45.833 0.00 0.00 0.00 4.63
2123 4010 5.678955 ACACCACCTTCTATAAACTCCTC 57.321 43.478 0.00 0.00 0.00 3.71
2124 4011 6.262207 ACTACACCACCTTCTATAAACTCCT 58.738 40.000 0.00 0.00 0.00 3.69
2126 4013 6.127786 ACGACTACACCACCTTCTATAAACTC 60.128 42.308 0.00 0.00 0.00 3.01
2127 4014 5.713861 ACGACTACACCACCTTCTATAAACT 59.286 40.000 0.00 0.00 0.00 2.66
2129 4016 5.105635 CCACGACTACACCACCTTCTATAAA 60.106 44.000 0.00 0.00 0.00 1.40
2132 4019 2.758979 CCACGACTACACCACCTTCTAT 59.241 50.000 0.00 0.00 0.00 1.98
2133 4020 2.165167 CCACGACTACACCACCTTCTA 58.835 52.381 0.00 0.00 0.00 2.10
2135 4022 0.669625 GCCACGACTACACCACCTTC 60.670 60.000 0.00 0.00 0.00 3.46
2139 4026 2.027625 GCAGCCACGACTACACCAC 61.028 63.158 0.00 0.00 0.00 4.16
2140 4027 2.342279 GCAGCCACGACTACACCA 59.658 61.111 0.00 0.00 0.00 4.17
2141 4028 2.434359 GGCAGCCACGACTACACC 60.434 66.667 6.55 0.00 0.00 4.16
2142 4029 2.809601 CGGCAGCCACGACTACAC 60.810 66.667 13.30 0.00 0.00 2.90
2144 4031 2.048503 AACGGCAGCCACGACTAC 60.049 61.111 13.30 0.00 34.93 2.73
2145 4032 2.048597 CAACGGCAGCCACGACTA 60.049 61.111 13.30 0.00 34.93 2.59
2146 4033 4.235762 ACAACGGCAGCCACGACT 62.236 61.111 13.30 0.00 34.93 4.18
2147 4034 3.712881 GACAACGGCAGCCACGAC 61.713 66.667 13.30 0.00 34.93 4.34
2157 4044 3.541831 CGATGGCGACGACAACGG 61.542 66.667 23.91 6.91 44.46 4.44
2158 4045 4.191485 GCGATGGCGACGACAACG 62.191 66.667 26.72 26.72 39.81 4.10
2159 4046 2.380410 AAGCGATGGCGACGACAAC 61.380 57.895 7.85 3.50 46.35 3.32
2160 4047 2.048597 AAGCGATGGCGACGACAA 60.049 55.556 7.85 0.00 46.35 3.18
2161 4048 2.809174 CAAGCGATGGCGACGACA 60.809 61.111 5.51 5.51 46.35 4.35
2162 4049 3.554692 CCAAGCGATGGCGACGAC 61.555 66.667 0.00 0.00 43.80 4.34
2170 4057 0.992072 CACGACTACACCAAGCGATG 59.008 55.000 0.00 0.00 0.00 3.84
2172 4059 1.287815 CCACGACTACACCAAGCGA 59.712 57.895 0.00 0.00 0.00 4.93
2173 4060 2.380410 GCCACGACTACACCAAGCG 61.380 63.158 0.00 0.00 0.00 4.68
2174 4061 0.245539 TAGCCACGACTACACCAAGC 59.754 55.000 0.00 0.00 0.00 4.01
2175 4062 1.403780 GGTAGCCACGACTACACCAAG 60.404 57.143 13.95 0.00 43.61 3.61
2176 4063 0.604578 GGTAGCCACGACTACACCAA 59.395 55.000 13.95 0.00 43.61 3.67
2177 4064 0.540133 TGGTAGCCACGACTACACCA 60.540 55.000 13.95 7.74 43.61 4.17
2179 4066 3.379372 TCTTATGGTAGCCACGACTACAC 59.621 47.826 13.95 6.83 43.61 2.90
2180 4067 3.623703 TCTTATGGTAGCCACGACTACA 58.376 45.455 13.95 4.54 43.61 2.74
2181 4068 3.004524 CCTCTTATGGTAGCCACGACTAC 59.995 52.174 0.00 0.00 41.54 2.73
2182 4069 3.220110 CCTCTTATGGTAGCCACGACTA 58.780 50.000 0.00 0.00 35.80 2.59
2183 4070 2.032620 CCTCTTATGGTAGCCACGACT 58.967 52.381 0.00 0.00 35.80 4.18
2184 4071 1.538419 GCCTCTTATGGTAGCCACGAC 60.538 57.143 0.00 0.00 35.80 4.34
2185 4072 0.750850 GCCTCTTATGGTAGCCACGA 59.249 55.000 0.00 0.00 35.80 4.35
2186 4073 0.753262 AGCCTCTTATGGTAGCCACG 59.247 55.000 0.00 0.00 35.80 4.94
2187 4074 2.043227 AGAGCCTCTTATGGTAGCCAC 58.957 52.381 0.00 0.00 35.80 5.01
2188 4075 2.478872 AGAGCCTCTTATGGTAGCCA 57.521 50.000 0.00 0.00 38.19 4.75
2189 4076 2.700897 TGAAGAGCCTCTTATGGTAGCC 59.299 50.000 7.02 0.00 36.73 3.93
2190 4077 4.314121 CATGAAGAGCCTCTTATGGTAGC 58.686 47.826 7.02 0.00 36.73 3.58
2191 4078 4.802248 GCCATGAAGAGCCTCTTATGGTAG 60.802 50.000 26.35 11.65 38.47 3.18
2192 4079 3.071602 GCCATGAAGAGCCTCTTATGGTA 59.928 47.826 26.35 9.49 38.47 3.25
2194 4081 2.502295 GCCATGAAGAGCCTCTTATGG 58.498 52.381 24.14 24.14 36.73 2.74
2211 4098 0.322816 GTGAAGGAGCATGAAGGCCA 60.323 55.000 5.01 0.00 0.00 5.36
2212 4099 0.322816 TGTGAAGGAGCATGAAGGCC 60.323 55.000 0.00 0.00 0.00 5.19
2214 4101 1.681166 CCCTGTGAAGGAGCATGAAGG 60.681 57.143 0.00 0.00 0.00 3.46
2215 4102 1.280133 TCCCTGTGAAGGAGCATGAAG 59.720 52.381 0.00 0.00 0.00 3.02
2216 4103 1.280133 CTCCCTGTGAAGGAGCATGAA 59.720 52.381 0.00 0.00 44.30 2.57
2217 4104 0.907486 CTCCCTGTGAAGGAGCATGA 59.093 55.000 0.00 0.00 44.30 3.07
2218 4105 3.473147 CTCCCTGTGAAGGAGCATG 57.527 57.895 0.00 0.00 44.30 4.06
2223 4110 1.613630 GGCTCCTCCCTGTGAAGGA 60.614 63.158 0.00 0.00 0.00 3.36
2224 4111 1.614824 AGGCTCCTCCCTGTGAAGG 60.615 63.158 0.00 0.00 32.84 3.46
2225 4112 1.904032 GAGGCTCCTCCCTGTGAAG 59.096 63.158 2.15 0.00 37.11 3.02
2226 4113 4.136978 GAGGCTCCTCCCTGTGAA 57.863 61.111 2.15 0.00 37.11 3.18
2236 4123 2.032620 TCAATCGAAGTAGGAGGCTCC 58.967 52.381 26.42 26.42 36.58 4.70
2237 4124 2.223852 GGTCAATCGAAGTAGGAGGCTC 60.224 54.545 5.78 5.78 0.00 4.70
2239 4126 1.480954 TGGTCAATCGAAGTAGGAGGC 59.519 52.381 0.00 0.00 0.00 4.70
2240 4127 2.101582 CCTGGTCAATCGAAGTAGGAGG 59.898 54.545 0.00 0.00 0.00 4.30
2241 4128 2.761208 ACCTGGTCAATCGAAGTAGGAG 59.239 50.000 0.00 0.00 0.00 3.69
2242 4129 2.496070 CACCTGGTCAATCGAAGTAGGA 59.504 50.000 0.00 0.00 0.00 2.94
2243 4130 2.418746 CCACCTGGTCAATCGAAGTAGG 60.419 54.545 0.00 0.00 0.00 3.18
2244 4131 2.418746 CCCACCTGGTCAATCGAAGTAG 60.419 54.545 0.00 0.00 0.00 2.57
2245 4132 1.553248 CCCACCTGGTCAATCGAAGTA 59.447 52.381 0.00 0.00 0.00 2.24
2247 4134 0.613260 TCCCACCTGGTCAATCGAAG 59.387 55.000 0.00 0.00 34.77 3.79
2248 4135 0.613260 CTCCCACCTGGTCAATCGAA 59.387 55.000 0.00 0.00 34.77 3.71
2250 4137 0.391661 CACTCCCACCTGGTCAATCG 60.392 60.000 0.00 0.00 34.77 3.34
2251 4138 0.035056 CCACTCCCACCTGGTCAATC 60.035 60.000 0.00 0.00 34.77 2.67
2253 4140 2.829384 GCCACTCCCACCTGGTCAA 61.829 63.158 0.00 0.00 34.77 3.18
2254 4141 3.249189 GCCACTCCCACCTGGTCA 61.249 66.667 0.00 0.00 34.77 4.02
2255 4142 4.035102 GGCCACTCCCACCTGGTC 62.035 72.222 0.00 0.00 34.77 4.02
2292 4179 3.814268 CATCAACAAGGGCGGCCG 61.814 66.667 24.05 24.05 0.00 6.13
2293 4180 2.361104 TCATCAACAAGGGCGGCC 60.361 61.111 22.67 22.67 0.00 6.13
2294 4181 2.877691 GTCATCAACAAGGGCGGC 59.122 61.111 0.00 0.00 0.00 6.53
2295 4182 0.744414 ATCGTCATCAACAAGGGCGG 60.744 55.000 0.00 0.00 0.00 6.13
2296 4183 0.374758 CATCGTCATCAACAAGGGCG 59.625 55.000 0.00 0.00 0.00 6.13
2297 4184 0.099436 GCATCGTCATCAACAAGGGC 59.901 55.000 0.00 0.00 0.00 5.19
2298 4185 0.734889 GGCATCGTCATCAACAAGGG 59.265 55.000 0.00 0.00 0.00 3.95
2299 4186 0.374758 CGGCATCGTCATCAACAAGG 59.625 55.000 0.00 0.00 0.00 3.61
2300 4187 3.883779 CGGCATCGTCATCAACAAG 57.116 52.632 0.00 0.00 0.00 3.16
2326 4213 4.724602 GAGACGCCGCTCAGCACA 62.725 66.667 0.00 0.00 35.01 4.57
2348 4235 4.785453 CCCTGTCAAGCCCGAGCC 62.785 72.222 0.00 0.00 41.25 4.70
2349 4236 3.672295 CTCCCTGTCAAGCCCGAGC 62.672 68.421 0.00 0.00 40.32 5.03
2350 4237 2.581354 CTCCCTGTCAAGCCCGAG 59.419 66.667 0.00 0.00 0.00 4.63
2351 4238 3.003173 CCTCCCTGTCAAGCCCGA 61.003 66.667 0.00 0.00 0.00 5.14
2352 4239 3.003173 TCCTCCCTGTCAAGCCCG 61.003 66.667 0.00 0.00 0.00 6.13
2353 4240 1.904990 GACTCCTCCCTGTCAAGCCC 61.905 65.000 0.00 0.00 33.75 5.19
2354 4241 0.907230 AGACTCCTCCCTGTCAAGCC 60.907 60.000 0.00 0.00 35.81 4.35
2355 4242 0.534873 GAGACTCCTCCCTGTCAAGC 59.465 60.000 0.00 0.00 35.81 4.01
2356 4243 0.814457 CGAGACTCCTCCCTGTCAAG 59.186 60.000 0.00 0.00 36.04 3.02
2357 4244 1.251527 GCGAGACTCCTCCCTGTCAA 61.252 60.000 0.00 0.00 36.04 3.18
2358 4245 1.679305 GCGAGACTCCTCCCTGTCA 60.679 63.158 0.00 0.00 36.04 3.58
2359 4246 1.379309 AGCGAGACTCCTCCCTGTC 60.379 63.158 0.00 0.00 36.04 3.51
2360 4247 1.680651 CAGCGAGACTCCTCCCTGT 60.681 63.158 0.00 0.00 39.38 4.00
2361 4248 2.422231 CCAGCGAGACTCCTCCCTG 61.422 68.421 0.00 0.00 42.28 4.45
2362 4249 2.043450 CCAGCGAGACTCCTCCCT 60.043 66.667 0.00 0.00 36.04 4.20
2363 4250 3.844090 GCCAGCGAGACTCCTCCC 61.844 72.222 0.00 0.00 36.04 4.30
2364 4251 4.200283 CGCCAGCGAGACTCCTCC 62.200 72.222 6.06 0.00 42.83 4.30
2365 4252 4.863925 GCGCCAGCGAGACTCCTC 62.864 72.222 17.53 0.00 42.83 3.71
2398 4285 2.435586 TCGTCGTCCTCGGACTCC 60.436 66.667 13.74 3.68 42.54 3.85
2399 4286 2.462782 CCTCGTCGTCCTCGGACTC 61.463 68.421 13.74 6.36 42.54 3.36
2400 4287 2.254737 ATCCTCGTCGTCCTCGGACT 62.255 60.000 13.74 0.00 42.54 3.85
2401 4288 1.818785 ATCCTCGTCGTCCTCGGAC 60.819 63.158 6.01 6.01 41.40 4.79
2402 4289 1.818363 CATCCTCGTCGTCCTCGGA 60.818 63.158 0.00 0.00 37.69 4.55
2404 4291 2.716244 CCATCCTCGTCGTCCTCG 59.284 66.667 0.00 0.00 38.55 4.63
2405 4292 2.413765 GCCATCCTCGTCGTCCTC 59.586 66.667 0.00 0.00 0.00 3.71
2406 4293 3.518998 CGCCATCCTCGTCGTCCT 61.519 66.667 0.00 0.00 0.00 3.85
2407 4294 3.823330 ACGCCATCCTCGTCGTCC 61.823 66.667 0.00 0.00 34.84 4.79
2410 4297 2.579787 GACACGCCATCCTCGTCG 60.580 66.667 0.00 0.00 38.19 5.12
2412 4299 2.994995 TGGACACGCCATCCTCGT 60.995 61.111 2.28 0.00 43.33 4.18
2423 4310 4.110493 GCTGAGGCGTATGGACAC 57.890 61.111 0.00 0.00 0.00 3.67
2435 4322 1.153667 GAAGCTCCTGGACGCTGAG 60.154 63.158 17.49 0.00 36.45 3.35
2436 4323 2.650116 GGAAGCTCCTGGACGCTGA 61.650 63.158 17.49 0.00 36.45 4.26
2437 4324 2.125350 GGAAGCTCCTGGACGCTG 60.125 66.667 17.49 0.00 36.45 5.18
2438 4325 3.394836 GGGAAGCTCCTGGACGCT 61.395 66.667 12.87 12.87 36.57 5.07
2439 4326 4.475135 GGGGAAGCTCCTGGACGC 62.475 72.222 9.30 9.30 36.57 5.19
2440 4327 4.148825 CGGGGAAGCTCCTGGACG 62.149 72.222 0.00 0.00 36.57 4.79
2458 4345 4.840005 CCCTCCTTCTTCCGCCGC 62.840 72.222 0.00 0.00 0.00 6.53
2459 4346 4.840005 GCCCTCCTTCTTCCGCCG 62.840 72.222 0.00 0.00 0.00 6.46
2460 4347 4.840005 CGCCCTCCTTCTTCCGCC 62.840 72.222 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.