Multiple sequence alignment - TraesCS7B01G335000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G335000 chr7B 100.000 5189 0 0 1 5189 590108555 590103367 0.000000e+00 9583
1 TraesCS7B01G335000 chr7B 84.442 1909 291 6 1115 3020 589899257 589901162 0.000000e+00 1875
2 TraesCS7B01G335000 chr7B 86.325 1543 208 3 1087 2627 589939947 589941488 0.000000e+00 1677
3 TraesCS7B01G335000 chr7B 92.214 411 31 1 2641 3051 589942917 589943326 9.690000e-162 580
4 TraesCS7B01G335000 chr7A 93.776 4836 230 28 376 5189 628867884 628863098 0.000000e+00 7197
5 TraesCS7B01G335000 chr7A 87.719 1995 243 2 1058 3051 628653213 628655206 0.000000e+00 2326
6 TraesCS7B01G335000 chr7A 86.186 1817 240 6 1058 2872 594452558 594454365 0.000000e+00 1954
7 TraesCS7B01G335000 chr7A 85.783 1456 202 5 1569 3022 169952411 169950959 0.000000e+00 1537
8 TraesCS7B01G335000 chr7A 89.759 332 12 9 46 365 628868253 628867932 6.260000e-109 405
9 TraesCS7B01G335000 chr7A 83.600 250 28 10 4503 4742 628839812 628839566 6.760000e-54 222
10 TraesCS7B01G335000 chr7D 93.502 4832 232 26 377 5189 546130553 546125785 0.000000e+00 7108
11 TraesCS7B01G335000 chr7D 93.182 2596 153 9 473 3051 545659486 545662074 0.000000e+00 3792
12 TraesCS7B01G335000 chr7D 86.774 1996 260 4 1058 3051 545654798 545656791 0.000000e+00 2220
13 TraesCS7B01G335000 chr7D 85.724 1506 210 3 1058 2562 518777539 518779040 0.000000e+00 1585
14 TraesCS7B01G335000 chr7D 91.509 318 27 0 2555 2872 518779182 518779499 6.170000e-119 438
15 TraesCS7B01G335000 chr7D 91.077 325 10 8 46 362 546130919 546130606 6.210000e-114 422
16 TraesCS7B01G335000 chr7D 100.000 40 0 0 407 446 545659442 545659481 2.000000e-09 75
17 TraesCS7B01G335000 chr6B 78.867 918 179 13 3269 4177 156373775 156372864 1.600000e-169 606
18 TraesCS7B01G335000 chr6A 78.758 918 180 12 3269 4177 98062712 98061801 7.430000e-168 601
19 TraesCS7B01G335000 chr6A 79.808 832 160 7 3328 4154 98247690 98246862 2.670000e-167 599
20 TraesCS7B01G335000 chr6A 78.767 876 179 6 3284 4154 98307727 98306854 9.690000e-162 580
21 TraesCS7B01G335000 chr6D 79.067 879 171 10 3284 4154 81761680 81760807 4.470000e-165 592
22 TraesCS7B01G335000 chr6D 78.812 892 178 10 3269 4153 81671633 81670746 1.610000e-164 590
23 TraesCS7B01G335000 chr6D 78.275 893 184 8 3270 4154 81771628 81770738 2.710000e-157 566


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G335000 chr7B 590103367 590108555 5188 True 9583.0 9583 100.000000 1 5189 1 chr7B.!!$R1 5188
1 TraesCS7B01G335000 chr7B 589899257 589901162 1905 False 1875.0 1875 84.442000 1115 3020 1 chr7B.!!$F1 1905
2 TraesCS7B01G335000 chr7B 589939947 589943326 3379 False 1128.5 1677 89.269500 1087 3051 2 chr7B.!!$F2 1964
3 TraesCS7B01G335000 chr7A 628863098 628868253 5155 True 3801.0 7197 91.767500 46 5189 2 chr7A.!!$R3 5143
4 TraesCS7B01G335000 chr7A 628653213 628655206 1993 False 2326.0 2326 87.719000 1058 3051 1 chr7A.!!$F2 1993
5 TraesCS7B01G335000 chr7A 594452558 594454365 1807 False 1954.0 1954 86.186000 1058 2872 1 chr7A.!!$F1 1814
6 TraesCS7B01G335000 chr7A 169950959 169952411 1452 True 1537.0 1537 85.783000 1569 3022 1 chr7A.!!$R1 1453
7 TraesCS7B01G335000 chr7D 546125785 546130919 5134 True 3765.0 7108 92.289500 46 5189 2 chr7D.!!$R1 5143
8 TraesCS7B01G335000 chr7D 545654798 545662074 7276 False 2029.0 3792 93.318667 407 3051 3 chr7D.!!$F2 2644
9 TraesCS7B01G335000 chr7D 518777539 518779499 1960 False 1011.5 1585 88.616500 1058 2872 2 chr7D.!!$F1 1814
10 TraesCS7B01G335000 chr6B 156372864 156373775 911 True 606.0 606 78.867000 3269 4177 1 chr6B.!!$R1 908
11 TraesCS7B01G335000 chr6A 98061801 98062712 911 True 601.0 601 78.758000 3269 4177 1 chr6A.!!$R1 908
12 TraesCS7B01G335000 chr6A 98246862 98247690 828 True 599.0 599 79.808000 3328 4154 1 chr6A.!!$R2 826
13 TraesCS7B01G335000 chr6A 98306854 98307727 873 True 580.0 580 78.767000 3284 4154 1 chr6A.!!$R3 870
14 TraesCS7B01G335000 chr6D 81760807 81761680 873 True 592.0 592 79.067000 3284 4154 1 chr6D.!!$R2 870
15 TraesCS7B01G335000 chr6D 81670746 81671633 887 True 590.0 590 78.812000 3269 4153 1 chr6D.!!$R1 884
16 TraesCS7B01G335000 chr6D 81770738 81771628 890 True 566.0 566 78.275000 3270 4154 1 chr6D.!!$R3 884

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
463 516 0.025513 GAGCGCAATTGACAGCTACG 59.974 55.000 18.83 8.72 40.39 3.51 F
890 965 0.177836 GCAGCTTCTTCCTCCTCCTC 59.822 60.000 0.00 0.00 0.00 3.71 F
891 966 0.829990 CAGCTTCTTCCTCCTCCTCC 59.170 60.000 0.00 0.00 0.00 4.30 F
1638 1717 1.006639 ACCAACGCCCCCTTATTTGAT 59.993 47.619 0.00 0.00 0.00 2.57 F
2895 9826 0.395311 CTGCCCTGAATGGTCTGCAT 60.395 55.000 0.00 0.00 0.00 3.96 F
3026 9957 1.308998 GGCCCTATGATCAACAACGG 58.691 55.000 0.00 0.00 0.00 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1274 1353 0.390472 GAGACCTCTGGAAGCCAACG 60.390 60.0 0.00 0.0 30.80 4.10 R
1882 1962 0.911769 TCCGGAATCTTGCCACTGAT 59.088 50.0 0.00 0.0 0.00 2.90 R
2406 7773 2.038952 TGATATCCAGAGCGGGATTTGG 59.961 50.0 11.93 0.0 45.42 3.28 R
3345 10279 0.926155 CGATGATGTTCTGCTGGTCG 59.074 55.0 0.00 0.0 0.00 4.79 R
3816 10753 0.852777 CGACCAGTTCAGTTGTGACG 59.147 55.0 0.00 0.0 30.10 4.35 R
4938 11880 0.036765 TTCCACAGTTCGATTCCCCG 60.037 55.0 0.00 0.0 0.00 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.779475 CTCGCCATTTATCCGCCT 57.221 55.556 0.00 0.00 0.00 5.52
18 19 3.006672 CTCGCCATTTATCCGCCTT 57.993 52.632 0.00 0.00 0.00 4.35
19 20 1.308998 CTCGCCATTTATCCGCCTTT 58.691 50.000 0.00 0.00 0.00 3.11
20 21 1.002468 CTCGCCATTTATCCGCCTTTG 60.002 52.381 0.00 0.00 0.00 2.77
21 22 1.021202 CGCCATTTATCCGCCTTTGA 58.979 50.000 0.00 0.00 0.00 2.69
22 23 1.002468 CGCCATTTATCCGCCTTTGAG 60.002 52.381 0.00 0.00 0.00 3.02
23 24 2.024414 GCCATTTATCCGCCTTTGAGT 58.976 47.619 0.00 0.00 0.00 3.41
24 25 2.427095 GCCATTTATCCGCCTTTGAGTT 59.573 45.455 0.00 0.00 0.00 3.01
25 26 3.489229 GCCATTTATCCGCCTTTGAGTTC 60.489 47.826 0.00 0.00 0.00 3.01
26 27 3.694072 CCATTTATCCGCCTTTGAGTTCA 59.306 43.478 0.00 0.00 0.00 3.18
27 28 4.201950 CCATTTATCCGCCTTTGAGTTCAG 60.202 45.833 0.00 0.00 0.00 3.02
28 29 2.024176 TATCCGCCTTTGAGTTCAGC 57.976 50.000 0.00 0.00 0.00 4.26
29 30 0.326264 ATCCGCCTTTGAGTTCAGCT 59.674 50.000 0.00 0.00 0.00 4.24
30 31 0.320771 TCCGCCTTTGAGTTCAGCTC 60.321 55.000 0.00 0.00 44.36 4.09
31 32 1.301677 CCGCCTTTGAGTTCAGCTCC 61.302 60.000 0.00 0.00 43.48 4.70
32 33 1.301677 CGCCTTTGAGTTCAGCTCCC 61.302 60.000 0.00 0.00 43.48 4.30
33 34 0.962855 GCCTTTGAGTTCAGCTCCCC 60.963 60.000 0.00 0.00 43.48 4.81
34 35 0.401738 CCTTTGAGTTCAGCTCCCCA 59.598 55.000 0.00 0.00 43.48 4.96
35 36 1.528129 CTTTGAGTTCAGCTCCCCAC 58.472 55.000 0.00 0.00 43.48 4.61
36 37 1.072965 CTTTGAGTTCAGCTCCCCACT 59.927 52.381 0.00 0.00 43.48 4.00
37 38 1.140312 TTGAGTTCAGCTCCCCACTT 58.860 50.000 0.00 0.00 43.48 3.16
38 39 1.140312 TGAGTTCAGCTCCCCACTTT 58.860 50.000 0.00 0.00 43.48 2.66
39 40 1.202806 TGAGTTCAGCTCCCCACTTTG 60.203 52.381 0.00 0.00 43.48 2.77
40 41 0.538287 AGTTCAGCTCCCCACTTTGC 60.538 55.000 0.00 0.00 0.00 3.68
41 42 0.538287 GTTCAGCTCCCCACTTTGCT 60.538 55.000 0.00 0.00 36.04 3.91
42 43 0.250901 TTCAGCTCCCCACTTTGCTC 60.251 55.000 0.00 0.00 33.03 4.26
43 44 1.676967 CAGCTCCCCACTTTGCTCC 60.677 63.158 0.00 0.00 33.03 4.70
44 45 1.849823 AGCTCCCCACTTTGCTCCT 60.850 57.895 0.00 0.00 0.00 3.69
64 65 0.387202 CAATCAAACCACGCACCCAA 59.613 50.000 0.00 0.00 0.00 4.12
65 66 1.115467 AATCAAACCACGCACCCAAA 58.885 45.000 0.00 0.00 0.00 3.28
66 67 0.387565 ATCAAACCACGCACCCAAAC 59.612 50.000 0.00 0.00 0.00 2.93
67 68 1.227118 CAAACCACGCACCCAAACC 60.227 57.895 0.00 0.00 0.00 3.27
68 69 1.682684 AAACCACGCACCCAAACCA 60.683 52.632 0.00 0.00 0.00 3.67
90 91 0.433492 CACATCAACGACGTTCGACC 59.567 55.000 10.95 0.00 43.74 4.79
112 113 4.028383 CACGACGTTAATCATTGATTGCC 58.972 43.478 19.81 10.10 33.95 4.52
131 140 3.070018 GCCTTATCAGATTATGTGCGCT 58.930 45.455 9.73 0.00 0.00 5.92
133 142 3.681897 CCTTATCAGATTATGTGCGCTCC 59.318 47.826 9.73 0.00 0.00 4.70
134 143 2.916702 ATCAGATTATGTGCGCTCCA 57.083 45.000 9.73 5.79 0.00 3.86
135 144 2.916702 TCAGATTATGTGCGCTCCAT 57.083 45.000 9.73 13.47 0.00 3.41
292 304 6.210584 TCCCTGTTCAATAATGAAAGAAACCC 59.789 38.462 0.00 0.00 46.66 4.11
293 305 6.211384 CCCTGTTCAATAATGAAAGAAACCCT 59.789 38.462 0.00 0.00 46.66 4.34
294 306 7.396055 CCCTGTTCAATAATGAAAGAAACCCTA 59.604 37.037 0.00 0.00 46.66 3.53
295 307 8.244113 CCTGTTCAATAATGAAAGAAACCCTAC 58.756 37.037 0.00 0.00 46.66 3.18
296 308 8.117813 TGTTCAATAATGAAAGAAACCCTACC 57.882 34.615 0.00 0.00 46.66 3.18
329 341 1.629043 AAGAGGCTCCACGTGTAAGA 58.371 50.000 15.65 3.71 0.00 2.10
387 440 2.267961 GGGTTCGCGGTGAGGATT 59.732 61.111 6.13 0.00 0.00 3.01
400 453 4.448210 GGTGAGGATTTATCAACGGCTAA 58.552 43.478 0.00 0.00 0.00 3.09
446 499 2.352651 CCGGTGACATGCAAATACTGAG 59.647 50.000 0.00 0.00 0.00 3.35
447 500 2.223112 CGGTGACATGCAAATACTGAGC 60.223 50.000 0.00 0.00 0.00 4.26
449 502 1.398041 TGACATGCAAATACTGAGCGC 59.602 47.619 0.00 0.00 0.00 5.92
450 503 1.398041 GACATGCAAATACTGAGCGCA 59.602 47.619 11.47 0.00 36.95 6.09
451 504 1.811965 ACATGCAAATACTGAGCGCAA 59.188 42.857 11.47 0.00 35.98 4.85
452 505 2.424601 ACATGCAAATACTGAGCGCAAT 59.575 40.909 11.47 0.00 35.98 3.56
453 506 3.119388 ACATGCAAATACTGAGCGCAATT 60.119 39.130 11.47 0.00 35.98 2.32
454 507 2.866198 TGCAAATACTGAGCGCAATTG 58.134 42.857 11.47 0.00 0.00 2.32
455 508 2.487372 TGCAAATACTGAGCGCAATTGA 59.513 40.909 11.47 0.00 0.00 2.57
456 509 2.848302 GCAAATACTGAGCGCAATTGAC 59.152 45.455 11.47 0.00 0.00 3.18
457 510 3.670359 GCAAATACTGAGCGCAATTGACA 60.670 43.478 11.47 2.55 0.00 3.58
458 511 4.093514 CAAATACTGAGCGCAATTGACAG 58.906 43.478 11.47 13.74 35.14 3.51
459 512 1.078709 TACTGAGCGCAATTGACAGC 58.921 50.000 11.47 11.01 32.67 4.40
460 513 0.604780 ACTGAGCGCAATTGACAGCT 60.605 50.000 18.86 18.86 43.33 4.24
461 514 1.338105 ACTGAGCGCAATTGACAGCTA 60.338 47.619 18.83 9.89 40.39 3.32
462 515 1.061711 CTGAGCGCAATTGACAGCTAC 59.938 52.381 18.83 14.03 40.39 3.58
463 516 0.025513 GAGCGCAATTGACAGCTACG 59.974 55.000 18.83 8.72 40.39 3.51
464 517 1.581147 GCGCAATTGACAGCTACGC 60.581 57.895 10.34 9.09 37.93 4.42
465 518 1.060937 CGCAATTGACAGCTACGCC 59.939 57.895 10.34 0.00 0.00 5.68
466 519 1.060937 GCAATTGACAGCTACGCCG 59.939 57.895 10.34 0.00 0.00 6.46
467 520 1.060937 CAATTGACAGCTACGCCGC 59.939 57.895 0.00 0.00 0.00 6.53
468 521 2.452813 AATTGACAGCTACGCCGCG 61.453 57.895 12.14 12.14 34.40 6.46
471 524 4.183686 GACAGCTACGCCGCGGTA 62.184 66.667 28.70 11.44 38.41 4.02
474 527 2.507769 AGCTACGCCGCGGTAAAC 60.508 61.111 28.70 12.96 34.40 2.01
489 543 5.544621 GCGGTAAACTTGTTGATAGTTACG 58.455 41.667 0.00 0.00 34.88 3.18
499 553 6.303021 TGTTGATAGTTACGGTTTGGTTTC 57.697 37.500 0.00 0.00 0.00 2.78
504 558 1.610038 GTTACGGTTTGGTTTCCCTGG 59.390 52.381 0.00 0.00 0.00 4.45
563 621 5.800941 GCATAGATATACGTAGCTGGTGAAC 59.199 44.000 0.08 0.00 0.00 3.18
577 635 4.056050 CTGGTGAACTATTATACGGGCAC 58.944 47.826 0.00 0.00 0.00 5.01
608 666 1.754226 TCAACACCAACTTCCAAAGCC 59.246 47.619 0.00 0.00 0.00 4.35
760 834 1.475682 CAGCAGCATTCTCCTTTTCCC 59.524 52.381 0.00 0.00 0.00 3.97
765 839 1.686428 GCATTCTCCTTTTCCCCCTCC 60.686 57.143 0.00 0.00 0.00 4.30
821 895 2.926778 AGGAGCTGATTAGGATGTGC 57.073 50.000 0.00 0.00 0.00 4.57
822 896 1.069823 AGGAGCTGATTAGGATGTGCG 59.930 52.381 0.00 0.00 0.00 5.34
889 964 1.271127 GGCAGCTTCTTCCTCCTCCT 61.271 60.000 0.00 0.00 0.00 3.69
890 965 0.177836 GCAGCTTCTTCCTCCTCCTC 59.822 60.000 0.00 0.00 0.00 3.71
891 966 0.829990 CAGCTTCTTCCTCCTCCTCC 59.170 60.000 0.00 0.00 0.00 4.30
994 1070 1.982612 CACGCGAGTTTCATGAGAGA 58.017 50.000 15.93 0.00 46.40 3.10
996 1072 1.135257 ACGCGAGTTTCATGAGAGAGG 60.135 52.381 15.93 0.00 46.40 3.69
1021 1097 1.449070 CAGCCGCTCAGCTCATCAA 60.449 57.895 0.00 0.00 42.61 2.57
1060 1136 2.093128 AGATACACCACCAAATCGTCCC 60.093 50.000 0.00 0.00 0.00 4.46
1093 1172 3.241530 TTGTCGCTGCCCTCCTGT 61.242 61.111 0.00 0.00 0.00 4.00
1097 1176 2.125350 CGCTGCCCTCCTGTTCTC 60.125 66.667 0.00 0.00 0.00 2.87
1233 1312 1.076485 GGACTGCTGCCAATGGGAT 60.076 57.895 0.00 0.00 35.59 3.85
1320 1399 2.342648 GTCTCGCCAAACCTCGGT 59.657 61.111 0.00 0.00 0.00 4.69
1437 1516 2.671177 CGTCAGCTTCAACCGCCTG 61.671 63.158 0.00 0.00 0.00 4.85
1445 1524 2.796483 TTCAACCGCCTGGATGGTCG 62.796 60.000 10.95 1.25 38.52 4.79
1638 1717 1.006639 ACCAACGCCCCCTTATTTGAT 59.993 47.619 0.00 0.00 0.00 2.57
1663 1742 3.616821 GCTTGACCTTTGTTTCAACCAAC 59.383 43.478 0.00 0.00 0.00 3.77
1855 1935 6.349611 CCACATAGCAAAACTAAGCAATCTGT 60.350 38.462 0.00 0.00 33.57 3.41
1882 1962 3.432186 CCTTAATCTTGGATCGACTGGCA 60.432 47.826 0.00 0.00 0.00 4.92
2011 7374 5.985530 TGCTCAAATCTCAGATACATTACCG 59.014 40.000 0.00 0.00 0.00 4.02
2031 7394 4.201744 ACCGTCAGAAACAACAGTTTTACG 60.202 41.667 13.02 13.02 35.71 3.18
2217 7581 2.045047 TGGAAATCTCAGGTCCCTCTCT 59.955 50.000 0.00 0.00 0.00 3.10
2232 7599 6.943146 GGTCCCTCTCTTTCTTTTCAATTACT 59.057 38.462 0.00 0.00 0.00 2.24
2258 7625 8.081633 TGGCAACTCTTTTACAAATATCACAAG 58.918 33.333 0.00 0.00 37.61 3.16
2348 7715 5.009631 TGAAACCATACCACAGGATGAAAG 58.990 41.667 0.00 0.00 39.69 2.62
2406 7773 0.542805 ATGATTGCCCATTGGTTGGC 59.457 50.000 1.20 0.00 44.97 4.52
2418 7785 2.710902 GGTTGGCCAAATCCCGCTC 61.711 63.158 22.47 4.66 34.09 5.03
2566 8082 2.158755 ACAGGGAATATACCAGCTGCAC 60.159 50.000 8.66 0.00 0.00 4.57
2594 8110 3.919216 AGATGCCGATGTTACTATCAGC 58.081 45.455 0.00 0.00 32.42 4.26
2661 9592 5.410132 TGTATTTTGGACACCATTACGTCAG 59.590 40.000 0.00 0.00 33.66 3.51
2841 9772 0.657368 CAAACCTGCAAACGCTCGAC 60.657 55.000 0.00 0.00 0.00 4.20
2895 9826 0.395311 CTGCCCTGAATGGTCTGCAT 60.395 55.000 0.00 0.00 0.00 3.96
3001 9932 2.644798 AGCTACAGTGGGAATCCAAAGT 59.355 45.455 0.09 0.00 46.04 2.66
3024 9955 2.722094 TGTGGCCCTATGATCAACAAC 58.278 47.619 0.00 0.00 0.00 3.32
3026 9957 1.308998 GGCCCTATGATCAACAACGG 58.691 55.000 0.00 0.00 0.00 4.44
3057 9988 2.202932 CCATCTTCAGCGTCCCCG 60.203 66.667 0.00 0.00 37.07 5.73
3087 10018 5.376625 TGGAACAAGAAGAACATTACTGCT 58.623 37.500 0.00 0.00 31.92 4.24
3108 10039 4.278419 GCTGTTGGATTAGGTGTGTTCTTT 59.722 41.667 0.00 0.00 0.00 2.52
3222 10153 4.745620 GGCGACATAGAGGTAAGTTCATTC 59.254 45.833 0.00 0.00 0.00 2.67
3231 10162 2.673368 GGTAAGTTCATTCACCTCTGCG 59.327 50.000 0.00 0.00 0.00 5.18
3238 10169 3.023832 TCATTCACCTCTGCGTCAGATA 58.976 45.455 9.47 0.00 39.92 1.98
3252 10183 4.092821 GCGTCAGATAACTTGTGCAATGTA 59.907 41.667 0.00 0.00 0.00 2.29
3345 10279 5.257082 TCTTAAAGGCCACAAACAACTTC 57.743 39.130 5.01 0.00 0.00 3.01
3450 10384 1.797537 GCTCAACGGCGAAATGTGC 60.798 57.895 16.62 17.18 0.00 4.57
3513 10447 2.474526 CGTGGCGAAACATGACAATCTC 60.475 50.000 0.00 0.00 0.00 2.75
3816 10753 0.892755 TCCGTCCCTATGACACACAC 59.107 55.000 0.00 0.00 44.71 3.82
3828 10765 1.996898 GACACACACGTCACAACTGAA 59.003 47.619 0.00 0.00 35.88 3.02
4200 11137 8.936864 CAGGTGGAAATGTAGTTAAAAGTAGAG 58.063 37.037 0.00 0.00 0.00 2.43
4234 11171 5.181245 GTGGTAATCTTGTGCTTTGCTAGAA 59.819 40.000 0.00 0.00 0.00 2.10
4351 11290 7.658525 TGTGAGCCCATATATTCAATTTTGT 57.341 32.000 0.00 0.00 0.00 2.83
4355 11294 8.000709 TGAGCCCATATATTCAATTTTGTCTCT 58.999 33.333 0.00 0.00 0.00 3.10
4419 11359 6.238925 CCCCAATTACGGAAAATGGTATTCTC 60.239 42.308 13.00 0.00 0.00 2.87
4421 11361 6.037830 CCAATTACGGAAAATGGTATTCTCGT 59.962 38.462 7.29 0.00 37.42 4.18
4447 11387 5.401531 TTGCTAGACTAGGTGTAAACTGG 57.598 43.478 11.48 0.00 0.00 4.00
4464 11404 9.198475 TGTAAACTGGGTAAAAGGATTGTTTTA 57.802 29.630 0.00 0.00 31.96 1.52
4536 11476 6.045318 CGGAGTTATGAGCCCATATATTCAG 58.955 44.000 0.00 0.00 35.38 3.02
4548 11488 6.823182 GCCCATATATTCAGTTTTGCCTTTTT 59.177 34.615 0.00 0.00 0.00 1.94
4599 11539 1.060122 CGTTCCACGATTACGGAAAGC 59.940 52.381 0.00 0.00 46.05 3.51
4640 11580 3.632145 GGGTGCTGTTTGAGAAAAGAGAA 59.368 43.478 0.02 0.00 0.00 2.87
4660 11601 0.753262 AGTCGGTTCAGAGCTGTTGT 59.247 50.000 0.00 0.00 0.00 3.32
4666 11607 3.364366 CGGTTCAGAGCTGTTGTTGAATC 60.364 47.826 0.00 0.00 32.76 2.52
4756 11698 8.944029 ACATGTTGATATGCTAGCAGAATAATC 58.056 33.333 23.89 18.23 0.00 1.75
4759 11701 8.370182 TGTTGATATGCTAGCAGAATAATCTCA 58.630 33.333 23.89 14.55 32.03 3.27
4785 11727 0.040958 CTGAGAAAGGCGCACAACAC 60.041 55.000 10.83 0.00 0.00 3.32
4786 11728 0.746204 TGAGAAAGGCGCACAACACA 60.746 50.000 10.83 0.00 0.00 3.72
4787 11729 0.380378 GAGAAAGGCGCACAACACAA 59.620 50.000 10.83 0.00 0.00 3.33
4788 11730 0.100503 AGAAAGGCGCACAACACAAC 59.899 50.000 10.83 0.00 0.00 3.32
4789 11731 1.199852 GAAAGGCGCACAACACAACG 61.200 55.000 10.83 0.00 0.00 4.10
4835 11777 5.643777 CCAAGTTGACTAGTTGTTCCTATGG 59.356 44.000 3.87 0.00 35.74 2.74
4845 11787 6.610075 AGTTGTTCCTATGGCATTGAATTT 57.390 33.333 4.78 0.00 0.00 1.82
4848 11790 8.416329 AGTTGTTCCTATGGCATTGAATTTATC 58.584 33.333 4.78 0.00 0.00 1.75
4876 11818 0.936600 CACAATCACGCGCATATGGA 59.063 50.000 5.73 0.00 0.00 3.41
4926 11868 4.170256 GAGAGCTAGTTTCAGTACTGTGC 58.830 47.826 21.99 15.97 32.70 4.57
4938 11880 4.122776 CAGTACTGTGCCAATATGAGGTC 58.877 47.826 15.06 0.00 0.00 3.85
4943 11885 0.692756 TGCCAATATGAGGTCGGGGA 60.693 55.000 0.00 0.00 0.00 4.81
4952 11894 4.515404 GGTCGGGGAATCGAACTG 57.485 61.111 0.00 0.00 42.91 3.16
4953 11895 1.595357 GGTCGGGGAATCGAACTGT 59.405 57.895 0.00 0.00 42.91 3.55
4954 11896 0.739813 GGTCGGGGAATCGAACTGTG 60.740 60.000 0.00 0.00 42.91 3.66
4955 11897 0.739813 GTCGGGGAATCGAACTGTGG 60.740 60.000 0.00 0.00 41.05 4.17
4956 11898 0.901114 TCGGGGAATCGAACTGTGGA 60.901 55.000 0.00 0.00 36.12 4.02
4957 11899 0.036765 CGGGGAATCGAACTGTGGAA 60.037 55.000 0.00 0.00 0.00 3.53
4958 11900 1.739067 GGGGAATCGAACTGTGGAAG 58.261 55.000 0.00 0.00 0.00 3.46
4959 11901 1.087501 GGGAATCGAACTGTGGAAGC 58.912 55.000 0.00 0.00 0.00 3.86
4960 11902 0.721718 GGAATCGAACTGTGGAAGCG 59.278 55.000 0.00 0.00 0.00 4.68
4961 11903 0.721718 GAATCGAACTGTGGAAGCGG 59.278 55.000 0.00 0.00 0.00 5.52
4962 11904 1.298859 AATCGAACTGTGGAAGCGGC 61.299 55.000 0.00 0.00 0.00 6.53
4963 11905 2.449031 ATCGAACTGTGGAAGCGGCA 62.449 55.000 1.45 0.00 0.00 5.69
4964 11906 2.034879 CGAACTGTGGAAGCGGCAT 61.035 57.895 1.45 0.00 0.00 4.40
4965 11907 1.577328 CGAACTGTGGAAGCGGCATT 61.577 55.000 1.45 0.00 0.00 3.56
4969 11911 0.379669 CTGTGGAAGCGGCATTGATC 59.620 55.000 1.45 0.00 0.00 2.92
4983 11925 2.609427 TTGATCCAGATTCCAGAGCG 57.391 50.000 0.00 0.00 0.00 5.03
4984 11926 1.780503 TGATCCAGATTCCAGAGCGA 58.219 50.000 0.00 0.00 0.00 4.93
4992 11934 2.093764 AGATTCCAGAGCGAAAGGAGTG 60.094 50.000 0.00 0.00 32.11 3.51
4996 11938 0.514691 CAGAGCGAAAGGAGTGCAAC 59.485 55.000 0.00 0.00 0.00 4.17
5154 12098 4.222810 ACAACCAAATCAAATTCCTAGGGC 59.777 41.667 9.46 0.00 0.00 5.19
5173 12117 1.065998 GCATCAAGTGGTTACCCCGTA 60.066 52.381 0.00 0.00 35.15 4.02
5174 12118 2.901249 CATCAAGTGGTTACCCCGTAG 58.099 52.381 0.00 0.00 35.15 3.51
5185 12129 2.754658 CCCGTAGCGACCCTCAGT 60.755 66.667 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.002468 CAAAGGCGGATAAATGGCGAG 60.002 52.381 0.00 0.00 35.52 5.03
1 2 1.021202 CAAAGGCGGATAAATGGCGA 58.979 50.000 0.00 0.00 35.52 5.54
3 4 2.024414 ACTCAAAGGCGGATAAATGGC 58.976 47.619 0.00 0.00 0.00 4.40
4 5 3.694072 TGAACTCAAAGGCGGATAAATGG 59.306 43.478 0.00 0.00 0.00 3.16
5 6 4.731773 GCTGAACTCAAAGGCGGATAAATG 60.732 45.833 0.00 0.00 0.00 2.32
6 7 3.378427 GCTGAACTCAAAGGCGGATAAAT 59.622 43.478 0.00 0.00 0.00 1.40
7 8 2.747446 GCTGAACTCAAAGGCGGATAAA 59.253 45.455 0.00 0.00 0.00 1.40
8 9 2.027192 AGCTGAACTCAAAGGCGGATAA 60.027 45.455 0.00 0.00 0.00 1.75
9 10 1.555075 AGCTGAACTCAAAGGCGGATA 59.445 47.619 0.00 0.00 0.00 2.59
10 11 0.326264 AGCTGAACTCAAAGGCGGAT 59.674 50.000 0.00 0.00 0.00 4.18
11 12 0.320771 GAGCTGAACTCAAAGGCGGA 60.321 55.000 0.00 0.00 45.49 5.54
12 13 2.166270 GAGCTGAACTCAAAGGCGG 58.834 57.895 0.00 0.00 45.49 6.13
20 21 1.528129 CAAAGTGGGGAGCTGAACTC 58.472 55.000 0.00 0.00 45.45 3.01
21 22 0.538287 GCAAAGTGGGGAGCTGAACT 60.538 55.000 0.00 0.00 0.00 3.01
22 23 0.538287 AGCAAAGTGGGGAGCTGAAC 60.538 55.000 0.00 0.00 0.00 3.18
23 24 0.250901 GAGCAAAGTGGGGAGCTGAA 60.251 55.000 0.00 0.00 0.00 3.02
24 25 1.376466 GAGCAAAGTGGGGAGCTGA 59.624 57.895 0.00 0.00 0.00 4.26
25 26 1.676967 GGAGCAAAGTGGGGAGCTG 60.677 63.158 0.00 0.00 0.00 4.24
26 27 1.846712 GAGGAGCAAAGTGGGGAGCT 61.847 60.000 0.00 0.00 0.00 4.09
27 28 1.377856 GAGGAGCAAAGTGGGGAGC 60.378 63.158 0.00 0.00 0.00 4.70
28 29 0.401738 TTGAGGAGCAAAGTGGGGAG 59.598 55.000 0.00 0.00 32.46 4.30
29 30 1.004745 GATTGAGGAGCAAAGTGGGGA 59.995 52.381 0.00 0.00 40.48 4.81
30 31 1.272092 TGATTGAGGAGCAAAGTGGGG 60.272 52.381 0.00 0.00 40.48 4.96
31 32 2.205022 TGATTGAGGAGCAAAGTGGG 57.795 50.000 0.00 0.00 40.48 4.61
32 33 3.305608 GGTTTGATTGAGGAGCAAAGTGG 60.306 47.826 0.00 0.00 43.64 4.00
33 34 3.318839 TGGTTTGATTGAGGAGCAAAGTG 59.681 43.478 0.00 0.00 43.64 3.16
34 35 3.319122 GTGGTTTGATTGAGGAGCAAAGT 59.681 43.478 0.00 0.00 43.64 2.66
35 36 3.610114 CGTGGTTTGATTGAGGAGCAAAG 60.610 47.826 0.00 0.00 43.64 2.77
36 37 2.293122 CGTGGTTTGATTGAGGAGCAAA 59.707 45.455 0.00 0.00 41.03 3.68
37 38 1.879380 CGTGGTTTGATTGAGGAGCAA 59.121 47.619 0.00 0.00 41.53 3.91
38 39 1.522668 CGTGGTTTGATTGAGGAGCA 58.477 50.000 0.00 0.00 0.00 4.26
39 40 0.169009 GCGTGGTTTGATTGAGGAGC 59.831 55.000 0.00 0.00 0.00 4.70
40 41 1.197721 GTGCGTGGTTTGATTGAGGAG 59.802 52.381 0.00 0.00 0.00 3.69
41 42 1.234821 GTGCGTGGTTTGATTGAGGA 58.765 50.000 0.00 0.00 0.00 3.71
42 43 0.240945 GGTGCGTGGTTTGATTGAGG 59.759 55.000 0.00 0.00 0.00 3.86
43 44 0.240945 GGGTGCGTGGTTTGATTGAG 59.759 55.000 0.00 0.00 0.00 3.02
44 45 0.466372 TGGGTGCGTGGTTTGATTGA 60.466 50.000 0.00 0.00 0.00 2.57
64 65 0.934496 CGTCGTTGATGTGTGTGGTT 59.066 50.000 0.00 0.00 0.00 3.67
65 66 0.179094 ACGTCGTTGATGTGTGTGGT 60.179 50.000 0.00 0.00 29.89 4.16
66 67 0.934496 AACGTCGTTGATGTGTGTGG 59.066 50.000 10.39 0.00 31.63 4.17
67 68 1.395449 CGAACGTCGTTGATGTGTGTG 60.395 52.381 16.75 0.00 34.72 3.82
68 69 0.850217 CGAACGTCGTTGATGTGTGT 59.150 50.000 16.75 0.00 34.72 3.72
90 91 4.028383 GGCAATCAATGATTAACGTCGTG 58.972 43.478 8.29 0.00 30.44 4.35
112 113 4.309933 TGGAGCGCACATAATCTGATAAG 58.690 43.478 11.47 0.00 0.00 1.73
131 140 3.122480 TGGAGCTTATCTTTGGGATGGA 58.878 45.455 0.00 0.00 35.98 3.41
133 142 4.337555 CACTTGGAGCTTATCTTTGGGATG 59.662 45.833 0.00 0.00 35.98 3.51
134 143 4.530875 CACTTGGAGCTTATCTTTGGGAT 58.469 43.478 0.00 0.00 38.38 3.85
135 144 3.873801 GCACTTGGAGCTTATCTTTGGGA 60.874 47.826 0.00 0.00 0.00 4.37
292 304 0.036388 TTTGCTGAGAAGGCGGGTAG 60.036 55.000 0.00 0.00 0.00 3.18
293 305 0.036388 CTTTGCTGAGAAGGCGGGTA 60.036 55.000 0.00 0.00 0.00 3.69
294 306 1.302832 CTTTGCTGAGAAGGCGGGT 60.303 57.895 0.00 0.00 0.00 5.28
295 307 1.003355 TCTTTGCTGAGAAGGCGGG 60.003 57.895 0.00 0.00 0.00 6.13
296 308 1.023513 CCTCTTTGCTGAGAAGGCGG 61.024 60.000 4.05 0.00 36.23 6.13
371 424 1.865340 GATAAATCCTCACCGCGAACC 59.135 52.381 8.23 0.00 0.00 3.62
373 426 2.933906 GTTGATAAATCCTCACCGCGAA 59.066 45.455 8.23 0.00 0.00 4.70
384 437 6.417191 TGACTTGTTAGCCGTTGATAAATC 57.583 37.500 0.00 0.00 0.00 2.17
387 440 5.123186 CCATTGACTTGTTAGCCGTTGATAA 59.877 40.000 0.00 0.00 0.00 1.75
400 453 2.479566 ATCGACAGCCATTGACTTGT 57.520 45.000 0.00 0.00 0.00 3.16
446 499 4.651317 CGTAGCTGTCAATTGCGC 57.349 55.556 0.00 0.00 0.00 6.09
459 512 1.010419 ACAAGTTTACCGCGGCGTAG 61.010 55.000 28.58 11.51 0.00 3.51
460 513 0.599728 AACAAGTTTACCGCGGCGTA 60.600 50.000 28.58 8.52 0.00 4.42
461 514 1.888638 AACAAGTTTACCGCGGCGT 60.889 52.632 28.58 9.80 0.00 5.68
462 515 1.439693 CAACAAGTTTACCGCGGCG 60.440 57.895 28.58 16.78 0.00 6.46
463 516 0.519961 ATCAACAAGTTTACCGCGGC 59.480 50.000 28.58 9.08 0.00 6.53
464 517 2.997986 ACTATCAACAAGTTTACCGCGG 59.002 45.455 26.86 26.86 0.00 6.46
465 518 4.657075 AACTATCAACAAGTTTACCGCG 57.343 40.909 0.00 0.00 33.39 6.46
466 519 5.445010 CCGTAACTATCAACAAGTTTACCGC 60.445 44.000 0.00 0.00 38.18 5.68
467 520 5.634859 ACCGTAACTATCAACAAGTTTACCG 59.365 40.000 0.00 0.00 38.18 4.02
468 521 7.425577 AACCGTAACTATCAACAAGTTTACC 57.574 36.000 0.00 0.00 38.18 2.85
469 522 7.799914 CCAAACCGTAACTATCAACAAGTTTAC 59.200 37.037 0.00 0.00 38.18 2.01
470 523 7.498570 ACCAAACCGTAACTATCAACAAGTTTA 59.501 33.333 0.00 0.00 38.18 2.01
471 524 6.319405 ACCAAACCGTAACTATCAACAAGTTT 59.681 34.615 0.00 0.00 38.18 2.66
474 527 5.934935 ACCAAACCGTAACTATCAACAAG 57.065 39.130 0.00 0.00 0.00 3.16
504 558 3.704231 ATGGTGCGACCCTGATGGC 62.704 63.158 3.33 0.00 37.50 4.40
563 621 1.349259 GCGCCGTGCCCGTATAATAG 61.349 60.000 0.00 0.00 37.76 1.73
577 635 1.295357 TGGTGTTGAATACTGCGCCG 61.295 55.000 4.18 0.00 34.50 6.46
608 666 1.812571 CTTTTCTTGGATGGTCACCCG 59.187 52.381 0.00 0.00 0.00 5.28
616 674 7.284034 AGCTGTTGTATATCCTTTTCTTGGATG 59.716 37.037 5.61 0.00 43.48 3.51
621 681 9.686683 ACATTAGCTGTTGTATATCCTTTTCTT 57.313 29.630 0.00 0.00 32.90 2.52
765 839 0.314935 AGCGTGTTTTTCAGCCCATG 59.685 50.000 0.00 0.00 0.00 3.66
840 914 1.943340 CTCGGAGAAAATGGCTAAGGC 59.057 52.381 0.00 0.00 34.09 4.35
915 990 2.988684 GCAACCACCATGGGCGAA 60.989 61.111 18.09 0.00 43.37 4.70
972 1048 2.096406 CATGAAACTCGCGTGCCG 59.904 61.111 5.77 0.00 38.61 5.69
974 1050 0.368227 CTCTCATGAAACTCGCGTGC 59.632 55.000 5.77 0.00 0.00 5.34
975 1051 1.916651 CTCTCTCATGAAACTCGCGTG 59.083 52.381 5.77 6.24 0.00 5.34
976 1052 1.135257 CCTCTCTCATGAAACTCGCGT 60.135 52.381 5.77 0.00 0.00 6.01
978 1054 2.535331 GTCCTCTCTCATGAAACTCGC 58.465 52.381 0.00 0.00 0.00 5.03
994 1070 4.479993 GAGCGGCTGCATGGTCCT 62.480 66.667 21.93 0.00 46.23 3.85
996 1072 3.200593 CTGAGCGGCTGCATGGTC 61.201 66.667 21.93 9.03 46.23 4.02
1093 1172 3.075005 CGGGGAGGCGAAGGAGAA 61.075 66.667 0.00 0.00 0.00 2.87
1274 1353 0.390472 GAGACCTCTGGAAGCCAACG 60.390 60.000 0.00 0.00 30.80 4.10
1312 1391 0.905357 CCAGGAAGATCACCGAGGTT 59.095 55.000 0.00 0.00 0.00 3.50
1313 1392 1.617947 GCCAGGAAGATCACCGAGGT 61.618 60.000 17.36 0.00 32.75 3.85
1320 1399 1.605992 CAGCAGGCCAGGAAGATCA 59.394 57.895 5.01 0.00 0.00 2.92
1372 1451 0.533951 ACCAATTCCGTCGGTAGACC 59.466 55.000 11.88 0.00 44.28 3.85
1437 1516 1.142748 CTCCTGCAGACGACCATCC 59.857 63.158 17.39 0.00 0.00 3.51
1460 1539 1.273886 GAAGGCCGGTATCTGAGGATC 59.726 57.143 1.90 0.00 33.71 3.36
1638 1717 5.195001 GGTTGAAACAAAGGTCAAGCATA 57.805 39.130 9.92 0.00 46.52 3.14
1663 1742 0.967380 GGGGGAATGTTGCCACTGAG 60.967 60.000 5.64 0.00 39.28 3.35
1855 1935 4.956700 AGTCGATCCAAGATTAAGGACAGA 59.043 41.667 0.00 0.00 36.60 3.41
1882 1962 0.911769 TCCGGAATCTTGCCACTGAT 59.088 50.000 0.00 0.00 0.00 2.90
2011 7374 4.496840 CCCCGTAAAACTGTTGTTTCTGAC 60.497 45.833 0.00 0.00 44.70 3.51
2031 7394 2.557056 GTTGACTTTGCTAAGTTCCCCC 59.443 50.000 14.73 2.74 44.51 5.40
2217 7581 7.346751 AGAGTTGCCAGTAATTGAAAAGAAA 57.653 32.000 0.00 0.00 0.00 2.52
2232 7599 7.517614 TGTGATATTTGTAAAAGAGTTGCCA 57.482 32.000 0.00 0.00 0.00 4.92
2258 7625 2.415857 CTCTTGAGCATCTGAAGTGCAC 59.584 50.000 9.40 9.40 44.87 4.57
2348 7715 6.449698 TGAAGCTTCTCAAAACCATCAATTC 58.550 36.000 26.09 0.00 0.00 2.17
2406 7773 2.038952 TGATATCCAGAGCGGGATTTGG 59.961 50.000 11.93 0.00 45.42 3.28
2418 7785 8.036575 TCCAATTTTTCAAGCTTTGATATCCAG 58.963 33.333 0.00 0.00 39.84 3.86
2566 8082 3.935203 AGTAACATCGGCATCTTTGTCAG 59.065 43.478 0.00 0.00 0.00 3.51
2594 8110 3.914364 GTCCAACTTAGCAGCATTTTTCG 59.086 43.478 0.00 0.00 0.00 3.46
2841 9772 2.423185 TGTGAGCTGGTTGTTTGACAAG 59.577 45.455 0.00 0.00 39.00 3.16
2880 9811 2.731572 AGGAAATGCAGACCATTCAGG 58.268 47.619 8.83 0.00 43.22 3.86
3001 9932 4.787135 TGTTGATCATAGGGCCACATAA 57.213 40.909 6.18 0.00 0.00 1.90
3024 9955 0.957395 ATGGTCTTGAGTTGCAGCCG 60.957 55.000 0.00 0.00 0.00 5.52
3026 9957 1.818642 AGATGGTCTTGAGTTGCAGC 58.181 50.000 0.00 0.00 0.00 5.25
3057 9988 3.869246 TGTTCTTCTTGTTCCAACGTCTC 59.131 43.478 0.00 0.00 0.00 3.36
3063 9994 5.827797 AGCAGTAATGTTCTTCTTGTTCCAA 59.172 36.000 0.00 0.00 0.00 3.53
3087 10018 4.582656 CCAAAGAACACACCTAATCCAACA 59.417 41.667 0.00 0.00 0.00 3.33
3108 10039 1.000521 CAGAATGGCAAGCCCTCCA 60.001 57.895 8.89 0.00 36.70 3.86
3212 10143 3.006430 TGACGCAGAGGTGAATGAACTTA 59.994 43.478 0.00 0.00 0.00 2.24
3222 10153 2.926200 CAAGTTATCTGACGCAGAGGTG 59.074 50.000 13.55 5.29 44.08 4.00
3231 10162 7.751732 TCATTACATTGCACAAGTTATCTGAC 58.248 34.615 0.00 0.00 0.00 3.51
3238 10169 6.403866 TCCTTTCATTACATTGCACAAGTT 57.596 33.333 0.00 0.00 0.00 2.66
3252 10183 5.549742 TCACCAAAATGCTTCCTTTCATT 57.450 34.783 0.00 0.00 34.66 2.57
3345 10279 0.926155 CGATGATGTTCTGCTGGTCG 59.074 55.000 0.00 0.00 0.00 4.79
3450 10384 4.096081 GCAGTGAATTCTCTTTCCATCAGG 59.904 45.833 7.30 0.00 0.00 3.86
3513 10447 1.120530 AGTAACCCCATAGAGGCACG 58.879 55.000 0.00 0.00 35.39 5.34
3816 10753 0.852777 CGACCAGTTCAGTTGTGACG 59.147 55.000 0.00 0.00 30.10 4.35
3828 10765 3.314331 CCCAGAGTGCCGACCAGT 61.314 66.667 0.00 0.00 0.00 4.00
4200 11137 4.572389 CACAAGATTACCACCTGTATCTGC 59.428 45.833 0.00 0.00 0.00 4.26
4234 11171 7.642082 ATCGTTCTACTCAGTTTACACCTAT 57.358 36.000 0.00 0.00 0.00 2.57
4255 11192 8.495949 ACTGTACAATCTGTTAGAAAACAATCG 58.504 33.333 0.00 0.00 44.79 3.34
4372 11311 2.863809 ACCGAGTTTGGAGCTGAAATT 58.136 42.857 0.00 0.00 0.00 1.82
4419 11359 2.263077 CACCTAGTCTAGCAAAGCACG 58.737 52.381 0.86 0.00 0.00 5.34
4421 11361 5.011738 AGTTTACACCTAGTCTAGCAAAGCA 59.988 40.000 0.86 0.00 0.00 3.91
4514 11454 8.854614 AAACTGAATATATGGGCTCATAACTC 57.145 34.615 11.06 8.03 39.10 3.01
4548 11488 3.880490 AGCTGAAATGTTTCCACGTACAA 59.120 39.130 3.26 0.00 36.36 2.41
4553 11493 1.879380 TGGAGCTGAAATGTTTCCACG 59.121 47.619 0.00 0.00 36.36 4.94
4640 11580 1.139058 ACAACAGCTCTGAACCGACTT 59.861 47.619 3.60 0.00 0.00 3.01
4660 11601 8.974238 AGCTCAAATAAATGAAGATGGATTCAA 58.026 29.630 0.00 0.00 42.21 2.69
4666 11607 6.145338 AGCAGCTCAAATAAATGAAGATGG 57.855 37.500 0.00 0.00 0.00 3.51
4756 11698 3.181512 GCGCCTTTCTCAGAGAAATTGAG 60.182 47.826 23.24 18.99 42.66 3.02
4759 11701 2.485814 GTGCGCCTTTCTCAGAGAAATT 59.514 45.455 23.24 0.00 42.66 1.82
4835 11777 6.317140 TGTGGTCTCAGAGATAAATTCAATGC 59.683 38.462 2.64 0.00 0.00 3.56
4845 11787 3.181486 GCGTGATTGTGGTCTCAGAGATA 60.181 47.826 2.64 0.00 0.00 1.98
4848 11790 1.354040 GCGTGATTGTGGTCTCAGAG 58.646 55.000 0.00 0.00 0.00 3.35
4876 11818 4.010349 GCAGCAGTTAGGACTTGGTAAAT 58.990 43.478 0.00 0.00 32.54 1.40
4926 11868 2.612972 CGATTCCCCGACCTCATATTGG 60.613 54.545 0.00 0.00 0.00 3.16
4938 11880 0.036765 TTCCACAGTTCGATTCCCCG 60.037 55.000 0.00 0.00 0.00 5.73
4943 11885 1.298859 GCCGCTTCCACAGTTCGATT 61.299 55.000 0.00 0.00 0.00 3.34
4951 11893 1.031571 GGATCAATGCCGCTTCCACA 61.032 55.000 0.00 0.00 0.00 4.17
4952 11894 1.031571 TGGATCAATGCCGCTTCCAC 61.032 55.000 0.00 0.00 31.67 4.02
4953 11895 0.749091 CTGGATCAATGCCGCTTCCA 60.749 55.000 0.00 0.00 35.29 3.53
4954 11896 0.464373 TCTGGATCAATGCCGCTTCC 60.464 55.000 0.00 0.00 0.00 3.46
4955 11897 1.602311 ATCTGGATCAATGCCGCTTC 58.398 50.000 0.00 0.00 0.00 3.86
4956 11898 1.952296 GAATCTGGATCAATGCCGCTT 59.048 47.619 0.00 0.00 0.00 4.68
4957 11899 1.602311 GAATCTGGATCAATGCCGCT 58.398 50.000 0.00 0.00 0.00 5.52
4958 11900 0.595095 GGAATCTGGATCAATGCCGC 59.405 55.000 0.00 0.00 0.00 6.53
4959 11901 1.878088 CTGGAATCTGGATCAATGCCG 59.122 52.381 0.00 0.00 0.00 5.69
4960 11902 3.147629 CTCTGGAATCTGGATCAATGCC 58.852 50.000 0.00 0.00 0.00 4.40
4961 11903 2.553172 GCTCTGGAATCTGGATCAATGC 59.447 50.000 0.00 0.00 0.00 3.56
4962 11904 2.806818 CGCTCTGGAATCTGGATCAATG 59.193 50.000 0.00 0.00 0.00 2.82
4963 11905 2.702478 TCGCTCTGGAATCTGGATCAAT 59.298 45.455 0.00 0.00 0.00 2.57
4964 11906 2.110578 TCGCTCTGGAATCTGGATCAA 58.889 47.619 0.00 0.00 0.00 2.57
4965 11907 1.780503 TCGCTCTGGAATCTGGATCA 58.219 50.000 0.00 0.00 0.00 2.92
4969 11911 1.208052 TCCTTTCGCTCTGGAATCTGG 59.792 52.381 0.00 0.00 0.00 3.86
4983 11925 0.954452 CTGTGGGTTGCACTCCTTTC 59.046 55.000 7.00 0.00 0.00 2.62
4984 11926 0.468029 CCTGTGGGTTGCACTCCTTT 60.468 55.000 7.00 0.00 0.00 3.11
4996 11938 1.597027 GTTGTCCGTGACCTGTGGG 60.597 63.158 2.23 0.00 38.88 4.61
5001 11943 1.134220 ACAATGTGTTGTCCGTGACCT 60.134 47.619 0.00 0.00 45.14 3.85
5022 11964 4.629065 GAAGAAATCGTTGTTAGTCTGCG 58.371 43.478 0.00 0.00 0.00 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.