Multiple sequence alignment - TraesCS7B01G334700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G334700 chr7B 100.000 4151 0 0 1 4151 589898101 589902251 0.000000e+00 7666.0
1 TraesCS7B01G334700 chr7B 84.470 1906 290 6 1160 3062 590107438 590105536 0.000000e+00 1875.0
2 TraesCS7B01G334700 chr7B 84.511 1543 227 11 1121 2657 589939940 589941476 0.000000e+00 1515.0
3 TraesCS7B01G334700 chr7B 84.766 663 95 5 2683 3344 589942917 589943574 0.000000e+00 660.0
4 TraesCS7B01G334700 chr7A 95.270 1966 89 4 1611 3574 169952411 169950448 0.000000e+00 3112.0
5 TraesCS7B01G334700 chr7A 84.505 2220 328 13 1122 3333 628653232 628655443 0.000000e+00 2180.0
6 TraesCS7B01G334700 chr7A 85.527 1907 268 8 1160 3062 628867153 628865251 0.000000e+00 1986.0
7 TraesCS7B01G334700 chr7A 85.508 1801 243 12 1121 2914 594452576 594454365 0.000000e+00 1864.0
8 TraesCS7B01G334700 chr7A 85.452 653 38 18 582 1204 629762443 629761818 9.800000e-176 627.0
9 TraesCS7B01G334700 chr7A 84.189 487 33 18 2 446 169953138 169952654 2.290000e-117 433.0
10 TraesCS7B01G334700 chr7A 84.455 431 25 9 622 1024 629719217 629718801 1.810000e-103 387.0
11 TraesCS7B01G334700 chr7A 92.063 189 15 0 3690 3878 169950317 169950129 2.460000e-67 267.0
12 TraesCS7B01G334700 chr7A 85.020 247 23 9 496 740 169952659 169952425 5.360000e-59 239.0
13 TraesCS7B01G334700 chr7A 93.548 93 6 0 30 122 628523100 628523192 5.600000e-29 139.0
14 TraesCS7B01G334700 chr7A 95.349 43 2 0 3606 3648 169950441 169950399 7.450000e-08 69.4
15 TraesCS7B01G334700 chr7A 96.970 33 1 0 3881 3913 169950111 169950079 5.800000e-04 56.5
16 TraesCS7B01G334700 chr7D 84.660 2236 322 16 1121 3346 545654816 545657040 0.000000e+00 2209.0
17 TraesCS7B01G334700 chr7D 83.163 2352 355 29 1130 3456 545660111 545662446 0.000000e+00 2111.0
18 TraesCS7B01G334700 chr7D 85.333 1909 268 12 1160 3062 546129824 546127922 0.000000e+00 1964.0
19 TraesCS7B01G334700 chr7D 86.949 613 42 17 738 1340 546810743 546811327 0.000000e+00 654.0
20 TraesCS7B01G334700 chr7D 85.301 415 32 14 29 418 546780856 546781266 6.460000e-108 401.0
21 TraesCS7B01G334700 chr7D 96.581 117 4 0 595 711 546781405 546781521 1.180000e-45 195.0
22 TraesCS7B01G334700 chr7D 95.455 44 1 1 4105 4148 528801040 528801082 7.450000e-08 69.4
23 TraesCS7B01G334700 chr5D 96.774 93 3 0 30 122 331839729 331839821 5.560000e-34 156.0
24 TraesCS7B01G334700 chr5D 91.071 56 3 2 437 492 54115555 54115502 1.600000e-09 75.0
25 TraesCS7B01G334700 chr5B 94.737 57 0 3 438 492 143315842 143315787 7.390000e-13 86.1
26 TraesCS7B01G334700 chr4A 94.340 53 2 1 440 492 717830716 717830665 3.440000e-11 80.5
27 TraesCS7B01G334700 chr4A 89.655 58 4 2 435 492 478186021 478186076 5.760000e-09 73.1
28 TraesCS7B01G334700 chr2D 97.872 47 0 1 446 492 470994819 470994864 3.440000e-11 80.5
29 TraesCS7B01G334700 chr1D 96.000 50 1 1 443 492 154902161 154902209 3.440000e-11 80.5
30 TraesCS7B01G334700 chr3B 94.231 52 1 2 442 492 345013327 345013377 1.240000e-10 78.7
31 TraesCS7B01G334700 chr2A 94.231 52 2 1 441 492 391351307 391351357 1.240000e-10 78.7
32 TraesCS7B01G334700 chr1B 94.231 52 1 2 446 496 130582619 130582569 1.240000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G334700 chr7B 589898101 589902251 4150 False 7666.00 7666 100.000000 1 4151 1 chr7B.!!$F1 4150
1 TraesCS7B01G334700 chr7B 590105536 590107438 1902 True 1875.00 1875 84.470000 1160 3062 1 chr7B.!!$R1 1902
2 TraesCS7B01G334700 chr7B 589939940 589943574 3634 False 1087.50 1515 84.638500 1121 3344 2 chr7B.!!$F2 2223
3 TraesCS7B01G334700 chr7A 628653232 628655443 2211 False 2180.00 2180 84.505000 1122 3333 1 chr7A.!!$F3 2211
4 TraesCS7B01G334700 chr7A 628865251 628867153 1902 True 1986.00 1986 85.527000 1160 3062 1 chr7A.!!$R1 1902
5 TraesCS7B01G334700 chr7A 594452576 594454365 1789 False 1864.00 1864 85.508000 1121 2914 1 chr7A.!!$F1 1793
6 TraesCS7B01G334700 chr7A 169950079 169953138 3059 True 696.15 3112 91.476833 2 3913 6 chr7A.!!$R4 3911
7 TraesCS7B01G334700 chr7A 629761818 629762443 625 True 627.00 627 85.452000 582 1204 1 chr7A.!!$R3 622
8 TraesCS7B01G334700 chr7D 545654816 545662446 7630 False 2160.00 2209 83.911500 1121 3456 2 chr7D.!!$F3 2335
9 TraesCS7B01G334700 chr7D 546127922 546129824 1902 True 1964.00 1964 85.333000 1160 3062 1 chr7D.!!$R1 1902
10 TraesCS7B01G334700 chr7D 546810743 546811327 584 False 654.00 654 86.949000 738 1340 1 chr7D.!!$F2 602
11 TraesCS7B01G334700 chr7D 546780856 546781521 665 False 298.00 401 90.941000 29 711 2 chr7D.!!$F4 682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
559 640 0.336737 TTGTCCCACCAAAACCCTGT 59.663 50.0 0.00 0.0 0.00 4.00 F
1392 1521 0.324943 GGCTCTTGCACCTCAACCTA 59.675 55.0 0.00 0.0 41.91 3.08 F
1964 7377 0.246635 TCTGTCGGCCAGCTAAGAAC 59.753 55.0 2.24 0.0 41.25 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1551 1680 0.037232 GGAACGGTCCTGTGAAGGAG 60.037 60.0 13.76 0.0 41.24 3.69 R
2963 9795 0.324943 TGGTCCTTCTAGCCTGTTGC 59.675 55.0 0.00 0.0 41.71 4.17 R
3645 10494 0.033503 CTGGTGTACCCAAATCCCCC 60.034 60.0 0.00 0.0 44.65 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 96 9.959749 AAATACTTACAACAATGGTGTTTACTG 57.040 29.630 9.99 0.00 46.01 2.74
91 103 5.125100 ACAATGGTGTTTACTGCATTGAG 57.875 39.130 2.69 0.00 38.05 3.02
161 201 9.944663 TTCACAGTATACAACTTCATTCAAAAC 57.055 29.630 5.50 0.00 35.76 2.43
176 216 7.432869 TCATTCAAAACCAACTCAATTACAGG 58.567 34.615 0.00 0.00 0.00 4.00
235 275 3.295093 CTCTGCCTCTGTAATCCTGAGA 58.705 50.000 0.00 0.00 40.56 3.27
249 289 2.303022 TCCTGAGAAAACCGAGAGCAAT 59.697 45.455 0.00 0.00 0.00 3.56
257 297 2.698855 ACCGAGAGCAATAGCAACAT 57.301 45.000 0.00 0.00 45.49 2.71
259 299 3.347216 ACCGAGAGCAATAGCAACATTT 58.653 40.909 0.00 0.00 45.49 2.32
283 323 3.019003 GCCAACCAGAGGCGAGCTA 62.019 63.158 0.00 0.00 43.15 3.32
286 326 1.305381 AACCAGAGGCGAGCTAGGT 60.305 57.895 0.00 0.00 0.00 3.08
310 350 3.074412 AGAACCTAAACAGCATCAACCG 58.926 45.455 0.00 0.00 0.00 4.44
312 352 3.134574 ACCTAAACAGCATCAACCGAA 57.865 42.857 0.00 0.00 0.00 4.30
327 367 1.635663 CCGAACCAACCGAGCATCAC 61.636 60.000 0.00 0.00 33.17 3.06
359 399 1.819905 GGTGGAGCAGAGTAGAGCC 59.180 63.158 0.00 0.00 0.00 4.70
383 423 4.689484 CAGCAGTAGCAGCACAGT 57.311 55.556 0.00 0.00 45.49 3.55
385 425 1.670406 AGCAGTAGCAGCACAGTGC 60.670 57.895 18.55 18.55 45.49 4.40
401 441 2.666508 CAGTGCAGCGAGTTAAACGTAT 59.333 45.455 0.00 0.00 0.00 3.06
416 456 3.040147 ACGTATAAGTGTTGCTGCTGT 57.960 42.857 0.00 0.00 0.00 4.40
418 458 3.432252 ACGTATAAGTGTTGCTGCTGTTC 59.568 43.478 0.00 0.00 0.00 3.18
419 459 3.679980 CGTATAAGTGTTGCTGCTGTTCT 59.320 43.478 0.00 0.00 0.00 3.01
424 464 2.493278 AGTGTTGCTGCTGTTCTTGTTT 59.507 40.909 0.00 0.00 0.00 2.83
426 466 3.304293 GTGTTGCTGCTGTTCTTGTTTTC 59.696 43.478 0.00 0.00 0.00 2.29
446 518 2.962421 TCTTTTCCCGAAATGGCACTTT 59.038 40.909 0.00 0.00 35.87 2.66
447 519 3.386402 TCTTTTCCCGAAATGGCACTTTT 59.614 39.130 0.00 0.00 35.87 2.27
448 520 3.828875 TTTCCCGAAATGGCACTTTTT 57.171 38.095 0.00 0.00 35.87 1.94
464 536 2.700722 TTTTTCAAAAAGGGGCGCTT 57.299 40.000 11.46 11.46 0.00 4.68
465 537 2.700722 TTTTCAAAAAGGGGCGCTTT 57.299 40.000 22.23 22.23 0.00 3.51
466 538 3.821421 TTTTCAAAAAGGGGCGCTTTA 57.179 38.095 26.94 11.41 0.00 1.85
467 539 4.344359 TTTTCAAAAAGGGGCGCTTTAT 57.656 36.364 26.94 15.50 0.00 1.40
468 540 4.344359 TTTCAAAAAGGGGCGCTTTATT 57.656 36.364 26.94 19.52 0.00 1.40
469 541 5.470047 TTTCAAAAAGGGGCGCTTTATTA 57.530 34.783 26.94 13.79 0.00 0.98
470 542 4.443913 TCAAAAAGGGGCGCTTTATTAC 57.556 40.909 26.94 0.00 0.00 1.89
471 543 4.083565 TCAAAAAGGGGCGCTTTATTACT 58.916 39.130 26.94 10.70 0.00 2.24
472 544 4.525100 TCAAAAAGGGGCGCTTTATTACTT 59.475 37.500 26.94 15.64 0.00 2.24
473 545 5.711036 TCAAAAAGGGGCGCTTTATTACTTA 59.289 36.000 26.94 8.51 0.00 2.24
474 546 6.208994 TCAAAAAGGGGCGCTTTATTACTTAA 59.791 34.615 26.94 3.82 0.00 1.85
475 547 6.593268 AAAAGGGGCGCTTTATTACTTAAA 57.407 33.333 26.94 0.00 0.00 1.52
476 548 6.593268 AAAGGGGCGCTTTATTACTTAAAA 57.407 33.333 25.79 0.00 29.52 1.52
477 549 5.830000 AGGGGCGCTTTATTACTTAAAAG 57.170 39.130 7.64 0.00 36.09 2.27
478 550 4.643334 AGGGGCGCTTTATTACTTAAAAGG 59.357 41.667 7.64 0.00 34.07 3.11
479 551 4.400251 GGGGCGCTTTATTACTTAAAAGGT 59.600 41.667 7.64 0.00 34.07 3.50
480 552 5.105635 GGGGCGCTTTATTACTTAAAAGGTT 60.106 40.000 7.64 0.00 34.07 3.50
481 553 6.392354 GGGCGCTTTATTACTTAAAAGGTTT 58.608 36.000 7.64 0.00 34.07 3.27
482 554 7.362834 GGGGCGCTTTATTACTTAAAAGGTTTA 60.363 37.037 7.64 0.00 34.07 2.01
483 555 8.028354 GGGCGCTTTATTACTTAAAAGGTTTAA 58.972 33.333 7.64 0.00 34.07 1.52
484 556 9.069078 GGCGCTTTATTACTTAAAAGGTTTAAG 57.931 33.333 7.64 15.59 37.84 1.85
485 557 8.581263 GCGCTTTATTACTTAAAAGGTTTAAGC 58.419 33.333 16.65 0.00 35.88 3.09
486 558 9.615295 CGCTTTATTACTTAAAAGGTTTAAGCA 57.385 29.630 16.65 5.22 35.88 3.91
493 565 7.885009 ACTTAAAAGGTTTAAGCACTTACCA 57.115 32.000 16.65 0.00 35.88 3.25
494 566 8.473358 ACTTAAAAGGTTTAAGCACTTACCAT 57.527 30.769 16.65 0.00 35.88 3.55
495 567 8.357402 ACTTAAAAGGTTTAAGCACTTACCATG 58.643 33.333 16.65 0.00 35.88 3.66
496 568 4.783764 AAGGTTTAAGCACTTACCATGC 57.216 40.909 5.39 0.00 43.74 4.06
497 569 3.761897 AGGTTTAAGCACTTACCATGCA 58.238 40.909 5.39 0.00 45.92 3.96
498 570 3.506067 AGGTTTAAGCACTTACCATGCAC 59.494 43.478 5.39 0.00 45.92 4.57
499 571 3.506067 GGTTTAAGCACTTACCATGCACT 59.494 43.478 0.00 0.00 45.92 4.40
500 572 4.022329 GGTTTAAGCACTTACCATGCACTT 60.022 41.667 0.00 0.00 45.92 3.16
517 589 2.736721 CACTTACCGATGGTGACTTGTG 59.263 50.000 0.00 0.00 36.19 3.33
542 623 4.083164 TGCAAAGTGTGATGTGCTCTATTG 60.083 41.667 0.00 0.00 37.87 1.90
543 624 4.083110 GCAAAGTGTGATGTGCTCTATTGT 60.083 41.667 0.00 0.00 34.13 2.71
544 625 5.625251 CAAAGTGTGATGTGCTCTATTGTC 58.375 41.667 0.00 0.00 0.00 3.18
545 626 3.866651 AGTGTGATGTGCTCTATTGTCC 58.133 45.455 0.00 0.00 0.00 4.02
546 627 2.939103 GTGTGATGTGCTCTATTGTCCC 59.061 50.000 0.00 0.00 0.00 4.46
547 628 2.571202 TGTGATGTGCTCTATTGTCCCA 59.429 45.455 0.00 0.00 0.00 4.37
549 630 2.092968 TGATGTGCTCTATTGTCCCACC 60.093 50.000 0.00 0.00 0.00 4.61
550 631 1.357137 TGTGCTCTATTGTCCCACCA 58.643 50.000 0.00 0.00 0.00 4.17
551 632 1.702401 TGTGCTCTATTGTCCCACCAA 59.298 47.619 0.00 0.00 0.00 3.67
552 633 2.107378 TGTGCTCTATTGTCCCACCAAA 59.893 45.455 0.00 0.00 0.00 3.28
554 635 3.057526 GTGCTCTATTGTCCCACCAAAAC 60.058 47.826 0.00 0.00 0.00 2.43
556 637 3.089284 CTCTATTGTCCCACCAAAACCC 58.911 50.000 0.00 0.00 0.00 4.11
557 638 2.719705 TCTATTGTCCCACCAAAACCCT 59.280 45.455 0.00 0.00 0.00 4.34
559 640 0.336737 TTGTCCCACCAAAACCCTGT 59.663 50.000 0.00 0.00 0.00 4.00
560 641 1.223501 TGTCCCACCAAAACCCTGTA 58.776 50.000 0.00 0.00 0.00 2.74
562 643 2.178106 TGTCCCACCAAAACCCTGTAAT 59.822 45.455 0.00 0.00 0.00 1.89
563 644 2.823747 GTCCCACCAAAACCCTGTAATC 59.176 50.000 0.00 0.00 0.00 1.75
564 645 1.816224 CCCACCAAAACCCTGTAATCG 59.184 52.381 0.00 0.00 0.00 3.34
565 646 2.510613 CCACCAAAACCCTGTAATCGT 58.489 47.619 0.00 0.00 0.00 3.73
566 647 2.486592 CCACCAAAACCCTGTAATCGTC 59.513 50.000 0.00 0.00 0.00 4.20
567 648 3.408634 CACCAAAACCCTGTAATCGTCT 58.591 45.455 0.00 0.00 0.00 4.18
568 649 4.563993 CCACCAAAACCCTGTAATCGTCTA 60.564 45.833 0.00 0.00 0.00 2.59
569 650 4.630069 CACCAAAACCCTGTAATCGTCTAG 59.370 45.833 0.00 0.00 0.00 2.43
570 651 3.621715 CCAAAACCCTGTAATCGTCTAGC 59.378 47.826 0.00 0.00 0.00 3.42
574 655 2.165845 ACCCTGTAATCGTCTAGCACAC 59.834 50.000 0.00 0.00 0.00 3.82
575 656 2.481449 CCCTGTAATCGTCTAGCACACC 60.481 54.545 0.00 0.00 0.00 4.16
576 657 2.165641 CCTGTAATCGTCTAGCACACCA 59.834 50.000 0.00 0.00 0.00 4.17
577 658 3.179830 CTGTAATCGTCTAGCACACCAC 58.820 50.000 0.00 0.00 0.00 4.16
578 659 2.182825 GTAATCGTCTAGCACACCACG 58.817 52.381 0.00 0.00 0.00 4.94
579 660 0.736325 AATCGTCTAGCACACCACGC 60.736 55.000 0.00 0.00 32.21 5.34
580 661 1.595993 ATCGTCTAGCACACCACGCT 61.596 55.000 0.00 0.00 43.62 5.07
603 684 6.500684 TTGAGTAAGCAATGAATCAAGGTC 57.499 37.500 0.00 0.00 0.00 3.85
618 699 4.706616 TCAAGGTCCCCTAAACTAATCCT 58.293 43.478 0.00 0.00 31.13 3.24
649 730 1.507141 GGCACGTTGACTTGGAGGTG 61.507 60.000 0.00 0.00 35.41 4.00
740 848 7.639113 TGGTCAGAGTTGTTTGTTTTTCTAT 57.361 32.000 0.00 0.00 0.00 1.98
750 858 9.321590 GTTGTTTGTTTTTCTATACATACGACC 57.678 33.333 0.00 0.00 35.94 4.79
766 874 1.413077 CGACCAGGGATTAGGAAGACC 59.587 57.143 0.00 0.00 0.00 3.85
778 886 1.903183 AGGAAGACCTGGAAGCAGTAC 59.097 52.381 0.00 0.00 45.92 2.73
779 887 1.903183 GGAAGACCTGGAAGCAGTACT 59.097 52.381 0.00 0.00 0.00 2.73
780 888 2.354203 GGAAGACCTGGAAGCAGTACTG 60.354 54.545 18.93 18.93 0.00 2.74
799 909 1.611261 CCACAACGGAGTAGGGGGA 60.611 63.158 0.00 0.00 45.00 4.81
861 971 6.712095 TGCTTCTCTTTTCATTCTTGAGCTAA 59.288 34.615 0.00 0.00 32.27 3.09
890 1000 9.574516 AAGAGTAAAGATTTGCTAAAGAAGGAA 57.425 29.630 0.00 0.00 33.17 3.36
922 1032 0.447801 CTACCCTTCGTTGCACATGC 59.552 55.000 0.00 0.00 42.50 4.06
929 1039 2.743752 CGTTGCACATGCTCCTCGG 61.744 63.158 5.31 0.00 42.66 4.63
942 1052 1.186917 TCCTCGGCGAGTTTGGGTAA 61.187 55.000 32.41 2.92 0.00 2.85
946 1056 1.880894 GGCGAGTTTGGGTAAAGGC 59.119 57.895 0.00 0.00 0.00 4.35
947 1057 0.891904 GGCGAGTTTGGGTAAAGGCA 60.892 55.000 0.00 0.00 0.00 4.75
966 1076 2.935238 GCAGCAACCCGTTCTTGATCTA 60.935 50.000 0.00 0.00 0.00 1.98
970 1080 3.751698 GCAACCCGTTCTTGATCTAAACT 59.248 43.478 0.00 0.00 0.00 2.66
973 1083 5.997384 ACCCGTTCTTGATCTAAACTACT 57.003 39.130 0.00 0.00 0.00 2.57
974 1084 5.721232 ACCCGTTCTTGATCTAAACTACTG 58.279 41.667 0.00 0.00 0.00 2.74
976 1086 6.435277 ACCCGTTCTTGATCTAAACTACTGTA 59.565 38.462 0.00 0.00 0.00 2.74
978 1088 6.750963 CCGTTCTTGATCTAAACTACTGTACC 59.249 42.308 0.00 0.00 0.00 3.34
979 1089 7.310664 CGTTCTTGATCTAAACTACTGTACCA 58.689 38.462 0.00 0.00 0.00 3.25
980 1090 7.974501 CGTTCTTGATCTAAACTACTGTACCAT 59.025 37.037 0.00 0.00 0.00 3.55
981 1091 9.303537 GTTCTTGATCTAAACTACTGTACCATC 57.696 37.037 0.00 0.00 0.00 3.51
982 1092 8.008513 TCTTGATCTAAACTACTGTACCATCC 57.991 38.462 0.00 0.00 0.00 3.51
983 1093 7.618117 TCTTGATCTAAACTACTGTACCATCCA 59.382 37.037 0.00 0.00 0.00 3.41
984 1094 7.914427 TGATCTAAACTACTGTACCATCCAT 57.086 36.000 0.00 0.00 0.00 3.41
985 1095 7.726216 TGATCTAAACTACTGTACCATCCATG 58.274 38.462 0.00 0.00 0.00 3.66
986 1096 7.344612 TGATCTAAACTACTGTACCATCCATGT 59.655 37.037 0.00 0.00 0.00 3.21
987 1097 7.490657 TCTAAACTACTGTACCATCCATGTT 57.509 36.000 0.00 0.00 0.00 2.71
988 1098 7.553334 TCTAAACTACTGTACCATCCATGTTC 58.447 38.462 0.00 0.00 0.00 3.18
989 1099 6.374417 AAACTACTGTACCATCCATGTTCT 57.626 37.500 0.00 0.00 0.00 3.01
990 1100 6.374417 AACTACTGTACCATCCATGTTCTT 57.626 37.500 0.00 0.00 0.00 2.52
991 1101 5.734720 ACTACTGTACCATCCATGTTCTTG 58.265 41.667 0.00 0.00 0.00 3.02
992 1102 4.640771 ACTGTACCATCCATGTTCTTGT 57.359 40.909 0.00 0.00 0.00 3.16
1008 1118 5.128919 GTTCTTGTATGGCTCATGGATTCT 58.871 41.667 0.00 0.00 0.00 2.40
1019 1129 3.349927 TCATGGATTCTGTTGCAGGAAG 58.650 45.455 0.00 0.00 31.51 3.46
1054 1172 1.176527 TAAGGCTTTCAGGCACATGC 58.823 50.000 4.45 0.00 44.19 4.06
1105 1223 2.827921 AGGGAGAAAACAACCATGCATC 59.172 45.455 0.00 0.00 0.00 3.91
1117 1235 1.107945 CATGCATCTTCATGGCCACA 58.892 50.000 8.16 0.00 39.98 4.17
1120 1238 0.737219 GCATCTTCATGGCCACACTC 59.263 55.000 8.16 0.00 0.00 3.51
1124 1242 1.421268 TCTTCATGGCCACACTCTTGT 59.579 47.619 8.16 0.00 35.84 3.16
1154 1272 2.165998 GCTCTGTTTTGCTTCTCCCAT 58.834 47.619 0.00 0.00 0.00 4.00
1208 1337 4.896979 TGACTTCCTAGGCAGGCT 57.103 55.556 15.86 0.38 42.30 4.58
1209 1338 3.088923 TGACTTCCTAGGCAGGCTT 57.911 52.632 15.86 0.00 42.30 4.35
1210 1339 0.615331 TGACTTCCTAGGCAGGCTTG 59.385 55.000 15.86 0.00 42.30 4.01
1211 1340 0.615850 GACTTCCTAGGCAGGCTTGT 59.384 55.000 13.34 0.00 42.30 3.16
1212 1341 0.326264 ACTTCCTAGGCAGGCTTGTG 59.674 55.000 13.34 0.00 42.30 3.33
1213 1342 1.002134 TTCCTAGGCAGGCTTGTGC 60.002 57.895 2.96 0.00 42.30 4.57
1350 1479 1.383664 CCTCAGAGGGGCCATCTCA 60.384 63.158 19.50 4.11 33.92 3.27
1359 1488 1.649271 GGGCCATCTCACCATCCCTT 61.649 60.000 4.39 0.00 0.00 3.95
1361 1490 1.105759 GCCATCTCACCATCCCTTGC 61.106 60.000 0.00 0.00 0.00 4.01
1374 1503 1.284785 TCCCTTGCCAATCTTACAGGG 59.715 52.381 0.00 0.00 36.72 4.45
1392 1521 0.324943 GGCTCTTGCACCTCAACCTA 59.675 55.000 0.00 0.00 41.91 3.08
1398 1527 0.618458 TGCACCTCAACCTATCCCAC 59.382 55.000 0.00 0.00 0.00 4.61
1403 1532 4.627741 GCACCTCAACCTATCCCACAATTA 60.628 45.833 0.00 0.00 0.00 1.40
1404 1533 5.694995 CACCTCAACCTATCCCACAATTAT 58.305 41.667 0.00 0.00 0.00 1.28
1432 1561 1.614317 GCAGCCTACCAGTGGAATTGT 60.614 52.381 18.40 0.00 0.00 2.71
1436 1565 2.488153 GCCTACCAGTGGAATTGTTGTC 59.512 50.000 18.40 0.00 0.00 3.18
1450 1579 1.338105 TGTTGTCCTCCAGAAGCATCG 60.338 52.381 0.00 0.00 0.00 3.84
1452 1581 0.532573 TGTCCTCCAGAAGCATCGTC 59.467 55.000 0.00 0.00 0.00 4.20
1453 1582 0.820871 GTCCTCCAGAAGCATCGTCT 59.179 55.000 0.00 0.00 0.00 4.18
1514 1643 4.885907 GCAAGAGATCCAATCCTCAAATCA 59.114 41.667 0.00 0.00 32.07 2.57
1515 1644 5.535406 GCAAGAGATCCAATCCTCAAATCAT 59.465 40.000 0.00 0.00 32.07 2.45
1518 1647 7.630005 AGAGATCCAATCCTCAAATCATAGT 57.370 36.000 0.00 0.00 32.07 2.12
1525 1654 8.556589 TCCAATCCTCAAATCATAGTTTTCCTA 58.443 33.333 0.00 0.00 0.00 2.94
1534 1663 8.960591 CAAATCATAGTTTTCCTATCAAGGTGT 58.039 33.333 0.00 0.00 44.09 4.16
1551 1680 5.886960 AGGTGTTGAATATCTCAAGCAAC 57.113 39.130 0.00 0.00 44.83 4.17
1565 1694 0.398318 AGCAACTCCTTCACAGGACC 59.602 55.000 0.00 0.00 45.20 4.46
1572 1701 1.374252 CTTCACAGGACCGTTCCCG 60.374 63.158 0.00 0.00 44.10 5.14
1577 1706 2.524887 AGGACCGTTCCCGTCCAA 60.525 61.111 9.52 0.00 44.10 3.53
1598 1727 2.969628 ACATGGAAGGCTACGAAGAG 57.030 50.000 0.00 0.00 0.00 2.85
1741 1870 4.341502 CGGGGTTTGGCAGTTGCG 62.342 66.667 0.00 0.00 43.26 4.85
1915 2045 3.903714 TCTGACTGTCCTTGATCTTGGAA 59.096 43.478 5.17 1.15 33.72 3.53
1916 2046 4.533707 TCTGACTGTCCTTGATCTTGGAAT 59.466 41.667 5.17 0.00 33.72 3.01
1944 2074 2.027745 TCTCAGTGGCAAGATTCCAGAC 60.028 50.000 0.00 0.00 33.63 3.51
1964 7377 0.246635 TCTGTCGGCCAGCTAAGAAC 59.753 55.000 2.24 0.00 41.25 3.01
2130 7543 5.407995 GGATCTGAGGATAGCTGATTTTTCG 59.592 44.000 0.00 0.00 31.46 3.46
2133 7546 7.290110 TCTGAGGATAGCTGATTTTTCGATA 57.710 36.000 0.00 0.00 0.00 2.92
2239 7653 3.073798 TGGCCACTTCTCACCAAGAATAA 59.926 43.478 0.00 0.00 43.06 1.40
2355 7772 2.025887 CACCTCCCTGCTTATTGGAACT 60.026 50.000 0.00 0.00 0.00 3.01
2437 7854 5.220710 GGTACTGACCATAGATGATTGCT 57.779 43.478 0.00 0.00 46.12 3.91
2487 7904 9.775854 TGGATATCAAAGCTTGAAAAATTGAAA 57.224 25.926 0.00 0.00 43.95 2.69
2602 8019 7.338449 GCAACAACCTTACAGGGAATATAGAAA 59.662 37.037 0.00 0.00 40.58 2.52
2628 8045 0.592637 TGACAAAGTTGCCGATGCTG 59.407 50.000 0.00 0.00 38.71 4.41
2636 8053 0.533531 TTGCCGATGCTGCTATCAGG 60.534 55.000 0.00 9.12 40.65 3.86
2649 8066 2.223572 GCTATCAGGGGAAAATGTTGCG 60.224 50.000 0.00 0.00 0.00 4.85
2657 8074 2.403259 GGAAAATGTTGCGAAGTTGGG 58.597 47.619 0.00 0.00 0.00 4.12
2738 9570 7.121315 GGTCAGTGCTTTTCCTAGAATATTGTT 59.879 37.037 0.00 0.00 0.00 2.83
2800 9632 5.012239 AGATTGGTCAGCTAAAATTGCTCA 58.988 37.500 0.00 0.00 38.92 4.26
2944 9776 5.159209 CACTGAATGATTTGCACTTCCTTC 58.841 41.667 0.00 0.00 0.00 3.46
2963 9795 5.945784 TCCTTCCTACATTTGATGTTTCCAG 59.054 40.000 0.00 0.00 41.63 3.86
3062 9894 2.632028 AGCTATGTGGACCTATGCTCAG 59.368 50.000 0.00 0.00 0.00 3.35
3102 9934 2.157738 GCAACAGATCAAACCTCTGCT 58.842 47.619 0.00 0.00 43.18 4.24
3111 9943 2.660258 AAACCTCTGCTTCACGGCGT 62.660 55.000 6.77 6.77 34.52 5.68
3121 9953 0.741574 TTCACGGCGTCACAACTTGT 60.742 50.000 10.85 0.00 0.00 3.16
3149 9981 3.492656 GCGCTAGTCATTGGAATCACCTA 60.493 47.826 0.00 0.00 39.86 3.08
3347 10181 4.041075 TCTTGTACTGGATGTGGCTTAACA 59.959 41.667 0.00 0.00 0.00 2.41
3361 10210 4.455533 TGGCTTAACACTGTATTGCTTCAG 59.544 41.667 0.00 0.00 37.65 3.02
3418 10267 5.532779 TCGCATGAGATTAGATGTGTAGACT 59.467 40.000 0.00 0.00 32.87 3.24
3466 10315 6.159988 ACTTTCTAGCACTGTCAGTATGTTC 58.840 40.000 4.85 0.00 37.40 3.18
3524 10373 8.291032 CACTGCCAGTATATGAAGTAGTAGTAC 58.709 40.741 0.00 0.00 0.00 2.73
3525 10374 7.447853 ACTGCCAGTATATGAAGTAGTAGTACC 59.552 40.741 0.00 0.00 0.00 3.34
3529 10378 9.149225 CCAGTATATGAAGTAGTAGTACCTACG 57.851 40.741 4.02 0.00 41.37 3.51
3530 10379 9.703892 CAGTATATGAAGTAGTAGTACCTACGT 57.296 37.037 4.02 0.00 41.37 3.57
3545 10394 7.961325 GTACCTACGTACTAAATGTGTCTTC 57.039 40.000 0.00 0.00 41.50 2.87
3559 10408 3.563390 TGTGTCTTCACGCATTTCATCAA 59.437 39.130 0.00 0.00 46.49 2.57
3566 10415 6.371271 TCTTCACGCATTTCATCAATGTTCTA 59.629 34.615 0.00 0.00 43.95 2.10
3570 10419 5.801947 ACGCATTTCATCAATGTTCTAAAGC 59.198 36.000 0.00 0.00 43.95 3.51
3574 10423 6.579666 TTTCATCAATGTTCTAAAGCAGCT 57.420 33.333 0.00 0.00 0.00 4.24
3575 10424 7.686438 TTTCATCAATGTTCTAAAGCAGCTA 57.314 32.000 0.00 0.00 0.00 3.32
3576 10425 7.686438 TTCATCAATGTTCTAAAGCAGCTAA 57.314 32.000 0.00 0.00 0.00 3.09
3577 10426 7.686438 TCATCAATGTTCTAAAGCAGCTAAA 57.314 32.000 0.00 0.00 0.00 1.85
3578 10427 8.284945 TCATCAATGTTCTAAAGCAGCTAAAT 57.715 30.769 0.00 0.00 0.00 1.40
3580 10429 7.452880 TCAATGTTCTAAAGCAGCTAAATGT 57.547 32.000 0.00 0.00 0.00 2.71
3581 10430 7.885297 TCAATGTTCTAAAGCAGCTAAATGTT 58.115 30.769 0.00 0.00 0.00 2.71
3582 10431 8.359642 TCAATGTTCTAAAGCAGCTAAATGTTT 58.640 29.630 0.00 0.00 0.00 2.83
3583 10432 9.624697 CAATGTTCTAAAGCAGCTAAATGTTTA 57.375 29.630 0.00 0.00 0.00 2.01
3588 10437 9.855021 TTCTAAAGCAGCTAAATGTTTAAATCC 57.145 29.630 0.00 0.00 0.00 3.01
3589 10438 9.243105 TCTAAAGCAGCTAAATGTTTAAATCCT 57.757 29.630 0.00 0.00 0.00 3.24
3590 10439 9.508567 CTAAAGCAGCTAAATGTTTAAATCCTC 57.491 33.333 0.00 0.00 0.00 3.71
3591 10440 7.709149 AAGCAGCTAAATGTTTAAATCCTCT 57.291 32.000 0.00 0.00 0.00 3.69
3592 10441 8.807948 AAGCAGCTAAATGTTTAAATCCTCTA 57.192 30.769 0.00 0.00 0.00 2.43
3593 10442 8.986929 AGCAGCTAAATGTTTAAATCCTCTAT 57.013 30.769 0.00 0.00 0.00 1.98
3594 10443 8.844244 AGCAGCTAAATGTTTAAATCCTCTATG 58.156 33.333 0.00 0.00 0.00 2.23
3595 10444 8.624776 GCAGCTAAATGTTTAAATCCTCTATGT 58.375 33.333 0.00 0.00 0.00 2.29
3603 10452 8.777578 TGTTTAAATCCTCTATGTAGCTAGGA 57.222 34.615 3.15 3.15 42.17 2.94
3604 10453 8.639761 TGTTTAAATCCTCTATGTAGCTAGGAC 58.360 37.037 2.72 0.00 40.83 3.85
3638 10487 4.036262 CCACAGAAATCGACCAAAGAACAA 59.964 41.667 0.00 0.00 0.00 2.83
3645 10494 7.499232 AGAAATCGACCAAAGAACAATATAGGG 59.501 37.037 0.00 0.00 0.00 3.53
3674 10529 0.172803 GGTACACCAGAGAATCGCGT 59.827 55.000 5.77 0.00 42.67 6.01
3677 10532 0.172803 ACACCAGAGAATCGCGTACC 59.827 55.000 5.77 0.00 42.67 3.34
3698 10587 3.202706 GATTTGGACCGCTCGCCC 61.203 66.667 0.00 0.00 0.00 6.13
3782 10671 3.551915 GAAACCGCCGCTACGCTC 61.552 66.667 0.00 0.00 0.00 5.03
3830 10719 4.091939 AAGCCGGCCGGGTAGAAC 62.092 66.667 46.03 27.76 46.38 3.01
3854 10743 2.975536 CGAGGGCTCAACGGGTAA 59.024 61.111 0.00 0.00 0.00 2.85
3856 10745 0.107848 CGAGGGCTCAACGGGTAAAT 60.108 55.000 0.00 0.00 0.00 1.40
3860 10749 1.614850 GGGCTCAACGGGTAAATGGAA 60.615 52.381 0.00 0.00 0.00 3.53
3913 10817 1.140375 GGGAATCTCGCCGTACGTT 59.860 57.895 15.21 0.00 44.19 3.99
3914 10818 0.869028 GGGAATCTCGCCGTACGTTC 60.869 60.000 15.21 9.78 44.19 3.95
3915 10819 0.100146 GGAATCTCGCCGTACGTTCT 59.900 55.000 15.21 0.00 44.19 3.01
3916 10820 1.331756 GGAATCTCGCCGTACGTTCTA 59.668 52.381 15.21 0.00 44.19 2.10
3917 10821 2.601741 GGAATCTCGCCGTACGTTCTAG 60.602 54.545 15.21 7.18 44.19 2.43
3918 10822 0.942962 ATCTCGCCGTACGTTCTAGG 59.057 55.000 15.21 0.00 44.19 3.02
3919 10823 0.391661 TCTCGCCGTACGTTCTAGGT 60.392 55.000 15.21 0.00 44.19 3.08
3920 10824 0.449388 CTCGCCGTACGTTCTAGGTT 59.551 55.000 15.21 0.00 44.19 3.50
3921 10825 1.665679 CTCGCCGTACGTTCTAGGTTA 59.334 52.381 15.21 0.00 44.19 2.85
3922 10826 2.080693 TCGCCGTACGTTCTAGGTTAA 58.919 47.619 15.21 0.00 44.19 2.01
3923 10827 2.486203 TCGCCGTACGTTCTAGGTTAAA 59.514 45.455 15.21 0.00 44.19 1.52
3924 10828 3.057876 TCGCCGTACGTTCTAGGTTAAAA 60.058 43.478 15.21 0.00 44.19 1.52
3925 10829 3.672867 CGCCGTACGTTCTAGGTTAAAAA 59.327 43.478 15.21 0.00 36.87 1.94
4014 10918 8.511465 AAAATGTTCATTCTTCTGAAATCACG 57.489 30.769 0.00 0.00 36.92 4.35
4015 10919 5.611796 TGTTCATTCTTCTGAAATCACGG 57.388 39.130 0.00 0.00 36.92 4.94
4016 10920 5.304778 TGTTCATTCTTCTGAAATCACGGA 58.695 37.500 0.00 0.00 36.92 4.69
4017 10921 5.939883 TGTTCATTCTTCTGAAATCACGGAT 59.060 36.000 0.00 0.00 36.92 4.18
4018 10922 6.430925 TGTTCATTCTTCTGAAATCACGGATT 59.569 34.615 0.00 0.00 36.92 3.01
4019 10923 7.040478 TGTTCATTCTTCTGAAATCACGGATTT 60.040 33.333 10.45 10.45 43.77 2.17
4020 10924 7.452880 TCATTCTTCTGAAATCACGGATTTT 57.547 32.000 11.53 0.00 41.56 1.82
4021 10925 7.885297 TCATTCTTCTGAAATCACGGATTTTT 58.115 30.769 11.53 0.00 41.56 1.94
4122 11026 4.434483 AAAAAGGGGGCGTCCATC 57.566 55.556 9.07 0.00 37.22 3.51
4123 11027 1.304962 AAAAAGGGGGCGTCCATCC 60.305 57.895 9.07 0.00 37.22 3.51
4124 11028 2.798445 AAAAAGGGGGCGTCCATCCC 62.798 60.000 9.07 0.00 43.15 3.85
4129 11033 4.424711 GGGCGTCCATCCCTGCAA 62.425 66.667 0.00 0.00 40.66 4.08
4130 11034 2.361104 GGCGTCCATCCCTGCAAA 60.361 61.111 0.00 0.00 0.00 3.68
4131 11035 1.754234 GGCGTCCATCCCTGCAAAT 60.754 57.895 0.00 0.00 0.00 2.32
4132 11036 1.434696 GCGTCCATCCCTGCAAATG 59.565 57.895 0.00 0.00 0.00 2.32
4133 11037 2.008268 GCGTCCATCCCTGCAAATGG 62.008 60.000 13.69 13.69 43.22 3.16
4134 11038 1.386525 CGTCCATCCCTGCAAATGGG 61.387 60.000 17.76 11.86 42.31 4.00
4135 11039 1.381599 TCCATCCCTGCAAATGGGC 60.382 57.895 17.76 0.00 44.23 5.36
4136 11040 2.437396 CCATCCCTGCAAATGGGCC 61.437 63.158 12.52 0.00 44.23 5.80
4137 11041 1.686455 CATCCCTGCAAATGGGCCA 60.686 57.895 9.61 9.61 44.23 5.36
4138 11042 1.382146 ATCCCTGCAAATGGGCCAG 60.382 57.895 13.78 0.00 44.23 4.85
4139 11043 3.777910 CCCTGCAAATGGGCCAGC 61.778 66.667 13.78 11.18 37.99 4.85
4140 11044 3.777910 CCTGCAAATGGGCCAGCC 61.778 66.667 13.78 0.00 0.00 4.85
4150 11054 3.365265 GGCCAGCCCAAACTGACG 61.365 66.667 0.00 0.00 40.25 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 96 9.740239 ATGTCAATAAATATGTGAACTCAATGC 57.260 29.630 0.00 0.00 0.00 3.56
161 201 5.432885 ACGTTTTCCTGTAATTGAGTTGG 57.567 39.130 0.00 0.00 0.00 3.77
176 216 2.033236 TGTGAATGCTGTCGACGTTTTC 60.033 45.455 11.62 11.40 0.00 2.29
235 275 3.146066 TGTTGCTATTGCTCTCGGTTTT 58.854 40.909 0.00 0.00 40.48 2.43
249 289 4.342378 TGGTTGGCTTTGTAAATGTTGCTA 59.658 37.500 0.00 0.00 0.00 3.49
257 297 1.960689 GCCTCTGGTTGGCTTTGTAAA 59.039 47.619 0.00 0.00 46.38 2.01
259 299 3.339547 GCCTCTGGTTGGCTTTGTA 57.660 52.632 0.00 0.00 46.38 2.41
286 326 5.488341 GGTTGATGCTGTTTAGGTTCTCTA 58.512 41.667 0.00 0.00 0.00 2.43
310 350 1.635663 CGGTGATGCTCGGTTGGTTC 61.636 60.000 0.00 0.00 0.00 3.62
312 352 2.047274 CGGTGATGCTCGGTTGGT 60.047 61.111 0.00 0.00 0.00 3.67
346 386 2.023788 GCTCTCTGGCTCTACTCTGCT 61.024 57.143 0.00 0.00 0.00 4.24
359 399 3.349088 CTGCTACTGCTGCTCTCTG 57.651 57.895 0.00 0.00 40.48 3.35
383 423 4.325204 CACTTATACGTTTAACTCGCTGCA 59.675 41.667 0.00 0.00 0.00 4.41
385 425 6.231365 CAACACTTATACGTTTAACTCGCTG 58.769 40.000 0.00 0.00 0.00 5.18
401 441 3.278574 ACAAGAACAGCAGCAACACTTA 58.721 40.909 0.00 0.00 0.00 2.24
416 456 6.045955 CCATTTCGGGAAAAGAAAACAAGAA 58.954 36.000 0.00 0.00 40.44 2.52
418 458 4.211164 GCCATTTCGGGAAAAGAAAACAAG 59.789 41.667 0.00 0.00 40.44 3.16
419 459 4.123506 GCCATTTCGGGAAAAGAAAACAA 58.876 39.130 0.00 0.00 40.44 2.83
424 464 2.593026 AGTGCCATTTCGGGAAAAGAA 58.407 42.857 0.00 0.00 36.51 2.52
426 466 3.385193 AAAGTGCCATTTCGGGAAAAG 57.615 42.857 0.00 0.00 36.51 2.27
446 518 2.700722 AAAGCGCCCCTTTTTGAAAA 57.299 40.000 2.29 0.00 40.85 2.29
447 519 4.344359 AATAAAGCGCCCCTTTTTGAAA 57.656 36.364 2.29 0.00 40.85 2.69
448 520 4.525100 AGTAATAAAGCGCCCCTTTTTGAA 59.475 37.500 2.29 0.00 40.85 2.69
449 521 4.083565 AGTAATAAAGCGCCCCTTTTTGA 58.916 39.130 2.29 0.00 40.85 2.69
450 522 4.450082 AGTAATAAAGCGCCCCTTTTTG 57.550 40.909 2.29 0.00 40.85 2.44
451 523 6.593268 TTAAGTAATAAAGCGCCCCTTTTT 57.407 33.333 2.29 0.00 40.85 1.94
452 524 6.593268 TTTAAGTAATAAAGCGCCCCTTTT 57.407 33.333 2.29 0.00 40.85 2.27
453 525 6.350696 CCTTTTAAGTAATAAAGCGCCCCTTT 60.351 38.462 2.29 0.06 45.44 3.11
454 526 5.126545 CCTTTTAAGTAATAAAGCGCCCCTT 59.873 40.000 2.29 0.00 35.03 3.95
455 527 4.643334 CCTTTTAAGTAATAAAGCGCCCCT 59.357 41.667 2.29 0.00 35.03 4.79
456 528 4.400251 ACCTTTTAAGTAATAAAGCGCCCC 59.600 41.667 2.29 0.00 35.03 5.80
457 529 5.571784 ACCTTTTAAGTAATAAAGCGCCC 57.428 39.130 2.29 0.00 35.03 6.13
458 530 8.969121 TTAAACCTTTTAAGTAATAAAGCGCC 57.031 30.769 2.29 0.00 35.03 6.53
459 531 8.581263 GCTTAAACCTTTTAAGTAATAAAGCGC 58.419 33.333 16.14 0.00 35.03 5.92
460 532 9.615295 TGCTTAAACCTTTTAAGTAATAAAGCG 57.385 29.630 16.14 0.00 35.03 4.68
467 539 9.406113 TGGTAAGTGCTTAAACCTTTTAAGTAA 57.594 29.630 16.14 6.23 35.14 2.24
468 540 8.977267 TGGTAAGTGCTTAAACCTTTTAAGTA 57.023 30.769 16.14 11.11 35.14 2.24
469 541 7.885009 TGGTAAGTGCTTAAACCTTTTAAGT 57.115 32.000 16.14 3.58 35.14 2.24
470 542 7.328493 GCATGGTAAGTGCTTAAACCTTTTAAG 59.672 37.037 12.23 12.23 39.45 1.85
471 543 7.149307 GCATGGTAAGTGCTTAAACCTTTTAA 58.851 34.615 0.00 0.00 39.45 1.52
472 544 6.265649 TGCATGGTAAGTGCTTAAACCTTTTA 59.734 34.615 0.00 0.00 42.92 1.52
473 545 5.069781 TGCATGGTAAGTGCTTAAACCTTTT 59.930 36.000 0.00 0.00 42.92 2.27
474 546 4.586841 TGCATGGTAAGTGCTTAAACCTTT 59.413 37.500 0.00 0.00 42.92 3.11
475 547 4.022329 GTGCATGGTAAGTGCTTAAACCTT 60.022 41.667 0.00 0.00 42.92 3.50
476 548 3.506067 GTGCATGGTAAGTGCTTAAACCT 59.494 43.478 0.00 0.00 42.92 3.50
477 549 3.506067 AGTGCATGGTAAGTGCTTAAACC 59.494 43.478 0.00 0.00 42.92 3.27
478 550 4.766404 AGTGCATGGTAAGTGCTTAAAC 57.234 40.909 0.00 0.00 42.92 2.01
479 551 5.182380 GGTAAGTGCATGGTAAGTGCTTAAA 59.818 40.000 0.00 0.00 42.92 1.52
480 552 4.698304 GGTAAGTGCATGGTAAGTGCTTAA 59.302 41.667 0.00 0.00 42.92 1.85
481 553 4.258543 GGTAAGTGCATGGTAAGTGCTTA 58.741 43.478 0.00 0.00 42.92 3.09
482 554 3.081804 GGTAAGTGCATGGTAAGTGCTT 58.918 45.455 0.00 0.00 42.92 3.91
483 555 2.711542 GGTAAGTGCATGGTAAGTGCT 58.288 47.619 0.00 0.00 42.92 4.40
484 556 1.396996 CGGTAAGTGCATGGTAAGTGC 59.603 52.381 0.00 0.00 42.81 4.40
485 557 2.967362 TCGGTAAGTGCATGGTAAGTG 58.033 47.619 0.00 0.00 0.00 3.16
486 558 3.531538 CATCGGTAAGTGCATGGTAAGT 58.468 45.455 0.00 0.00 0.00 2.24
487 559 2.872245 CCATCGGTAAGTGCATGGTAAG 59.128 50.000 0.00 0.00 32.49 2.34
488 560 2.237643 ACCATCGGTAAGTGCATGGTAA 59.762 45.455 2.54 0.00 45.94 2.85
489 561 1.834896 ACCATCGGTAAGTGCATGGTA 59.165 47.619 2.54 0.00 45.94 3.25
490 562 0.618458 ACCATCGGTAAGTGCATGGT 59.382 50.000 0.00 0.00 43.53 3.55
491 563 1.016627 CACCATCGGTAAGTGCATGG 58.983 55.000 0.00 0.00 41.52 3.66
492 564 1.665679 GTCACCATCGGTAAGTGCATG 59.334 52.381 0.00 0.00 32.11 4.06
493 565 1.555075 AGTCACCATCGGTAAGTGCAT 59.445 47.619 0.00 0.00 32.11 3.96
494 566 0.973632 AGTCACCATCGGTAAGTGCA 59.026 50.000 0.00 0.00 32.11 4.57
495 567 1.732259 CAAGTCACCATCGGTAAGTGC 59.268 52.381 0.00 0.00 32.11 4.40
496 568 2.736721 CACAAGTCACCATCGGTAAGTG 59.263 50.000 0.00 0.00 32.11 3.16
497 569 2.870435 GCACAAGTCACCATCGGTAAGT 60.870 50.000 0.00 0.00 32.11 2.24
498 570 1.732259 GCACAAGTCACCATCGGTAAG 59.268 52.381 0.00 0.00 32.11 2.34
499 571 1.346395 AGCACAAGTCACCATCGGTAA 59.654 47.619 0.00 0.00 32.11 2.85
500 572 0.973632 AGCACAAGTCACCATCGGTA 59.026 50.000 0.00 0.00 32.11 4.02
517 589 0.313043 AGCACATCACACTTTGCAGC 59.687 50.000 0.00 0.00 37.44 5.25
542 623 2.368311 TTACAGGGTTTTGGTGGGAC 57.632 50.000 0.00 0.00 0.00 4.46
543 624 2.553466 CGATTACAGGGTTTTGGTGGGA 60.553 50.000 0.00 0.00 0.00 4.37
544 625 1.816224 CGATTACAGGGTTTTGGTGGG 59.184 52.381 0.00 0.00 0.00 4.61
545 626 2.486592 GACGATTACAGGGTTTTGGTGG 59.513 50.000 0.00 0.00 0.00 4.61
546 627 3.408634 AGACGATTACAGGGTTTTGGTG 58.591 45.455 0.00 0.00 0.00 4.17
547 628 3.782656 AGACGATTACAGGGTTTTGGT 57.217 42.857 0.00 0.00 0.00 3.67
549 630 4.092968 GTGCTAGACGATTACAGGGTTTTG 59.907 45.833 0.00 0.00 0.00 2.44
550 631 4.251268 GTGCTAGACGATTACAGGGTTTT 58.749 43.478 0.00 0.00 0.00 2.43
551 632 3.259876 TGTGCTAGACGATTACAGGGTTT 59.740 43.478 0.00 0.00 0.00 3.27
552 633 2.829720 TGTGCTAGACGATTACAGGGTT 59.170 45.455 0.00 0.00 0.00 4.11
554 635 2.481449 GGTGTGCTAGACGATTACAGGG 60.481 54.545 0.00 0.00 0.00 4.45
556 637 3.179830 GTGGTGTGCTAGACGATTACAG 58.820 50.000 0.00 0.00 0.00 2.74
557 638 2.414957 CGTGGTGTGCTAGACGATTACA 60.415 50.000 0.00 0.00 33.64 2.41
559 640 1.468565 GCGTGGTGTGCTAGACGATTA 60.469 52.381 3.81 0.00 33.64 1.75
560 641 0.736325 GCGTGGTGTGCTAGACGATT 60.736 55.000 3.81 0.00 33.64 3.34
562 643 1.802337 AAGCGTGGTGTGCTAGACGA 61.802 55.000 3.81 0.00 43.14 4.20
563 644 1.372997 AAGCGTGGTGTGCTAGACG 60.373 57.895 0.00 0.00 43.14 4.18
564 645 0.319555 TCAAGCGTGGTGTGCTAGAC 60.320 55.000 0.00 0.00 43.14 2.59
565 646 0.038251 CTCAAGCGTGGTGTGCTAGA 60.038 55.000 0.00 0.00 43.14 2.43
566 647 0.319900 ACTCAAGCGTGGTGTGCTAG 60.320 55.000 0.00 0.00 43.14 3.42
567 648 0.963225 TACTCAAGCGTGGTGTGCTA 59.037 50.000 0.00 0.00 43.14 3.49
568 649 0.105964 TTACTCAAGCGTGGTGTGCT 59.894 50.000 0.00 0.00 46.68 4.40
569 650 0.512952 CTTACTCAAGCGTGGTGTGC 59.487 55.000 0.00 0.00 0.00 4.57
579 660 6.404074 GGACCTTGATTCATTGCTTACTCAAG 60.404 42.308 0.00 0.00 39.36 3.02
580 661 5.415701 GGACCTTGATTCATTGCTTACTCAA 59.584 40.000 0.00 0.00 0.00 3.02
603 684 7.147549 TGTCATAGAACAGGATTAGTTTAGGGG 60.148 40.741 0.00 0.00 0.00 4.79
618 699 2.036604 TCAACGTGCCTGTCATAGAACA 59.963 45.455 0.00 0.00 0.00 3.18
649 730 2.096013 GCAGGTAAATTCGTTGGAGAGC 59.904 50.000 0.00 0.00 0.00 4.09
740 848 4.458256 TCCTAATCCCTGGTCGTATGTA 57.542 45.455 0.00 0.00 0.00 2.29
750 858 2.764269 TCCAGGTCTTCCTAATCCCTG 58.236 52.381 0.00 0.00 43.07 4.45
778 886 1.079127 CCCTACTCCGTTGTGGCAG 60.079 63.158 0.00 0.00 37.80 4.85
779 887 2.589157 CCCCTACTCCGTTGTGGCA 61.589 63.158 0.00 0.00 37.80 4.92
780 888 2.267961 CCCCTACTCCGTTGTGGC 59.732 66.667 0.00 0.00 37.80 5.01
786 896 2.363361 CAGGTCCCCCTACTCCGT 59.637 66.667 0.00 0.00 39.89 4.69
787 897 3.155167 GCAGGTCCCCCTACTCCG 61.155 72.222 0.00 0.00 39.89 4.63
790 900 2.172229 TAACGGCAGGTCCCCCTACT 62.172 60.000 0.00 0.00 39.89 2.57
799 909 1.263356 TTCTACAGCTAACGGCAGGT 58.737 50.000 0.00 0.00 44.79 4.00
812 922 6.473131 CAGCGTATACCAACGTTTATTCTACA 59.527 38.462 0.00 0.00 44.64 2.74
890 1000 6.496144 ACGAAGGGTAGCTATAATTTCCTT 57.504 37.500 0.00 4.20 36.03 3.36
922 1032 1.601419 TACCCAAACTCGCCGAGGAG 61.601 60.000 19.61 7.37 39.97 3.69
929 1039 0.521735 CTGCCTTTACCCAAACTCGC 59.478 55.000 0.00 0.00 0.00 5.03
942 1052 1.152756 AAGAACGGGTTGCTGCCTT 60.153 52.632 0.00 0.00 0.00 4.35
946 1056 1.813513 AGATCAAGAACGGGTTGCTG 58.186 50.000 0.00 0.00 0.00 4.41
947 1057 3.695830 TTAGATCAAGAACGGGTTGCT 57.304 42.857 0.00 0.00 0.00 3.91
978 1088 4.201657 TGAGCCATACAAGAACATGGATG 58.798 43.478 4.80 0.00 40.91 3.51
979 1089 4.508551 TGAGCCATACAAGAACATGGAT 57.491 40.909 4.80 0.00 43.44 3.41
980 1090 3.998913 TGAGCCATACAAGAACATGGA 57.001 42.857 4.80 0.00 43.80 3.41
981 1091 3.317149 CCATGAGCCATACAAGAACATGG 59.683 47.826 0.00 0.00 44.14 3.66
982 1092 4.201657 TCCATGAGCCATACAAGAACATG 58.798 43.478 0.00 0.00 35.11 3.21
983 1093 4.508551 TCCATGAGCCATACAAGAACAT 57.491 40.909 0.00 0.00 0.00 2.71
984 1094 3.998913 TCCATGAGCCATACAAGAACA 57.001 42.857 0.00 0.00 0.00 3.18
985 1095 5.008415 CAGAATCCATGAGCCATACAAGAAC 59.992 44.000 0.00 0.00 0.00 3.01
986 1096 5.128205 CAGAATCCATGAGCCATACAAGAA 58.872 41.667 0.00 0.00 0.00 2.52
987 1097 4.164796 ACAGAATCCATGAGCCATACAAGA 59.835 41.667 0.00 0.00 0.00 3.02
988 1098 4.458397 ACAGAATCCATGAGCCATACAAG 58.542 43.478 0.00 0.00 0.00 3.16
989 1099 4.508551 ACAGAATCCATGAGCCATACAA 57.491 40.909 0.00 0.00 0.00 2.41
990 1100 4.201657 CAACAGAATCCATGAGCCATACA 58.798 43.478 0.00 0.00 0.00 2.29
991 1101 3.004106 GCAACAGAATCCATGAGCCATAC 59.996 47.826 0.00 0.00 0.00 2.39
992 1102 3.216800 GCAACAGAATCCATGAGCCATA 58.783 45.455 0.00 0.00 0.00 2.74
1019 1129 0.447801 CTTATGGCCACAACGCAGTC 59.552 55.000 8.16 0.00 45.00 3.51
1083 1201 2.676748 TGCATGGTTGTTTTCTCCCTT 58.323 42.857 0.00 0.00 0.00 3.95
1105 1223 1.901591 ACAAGAGTGTGGCCATGAAG 58.098 50.000 9.72 0.00 36.31 3.02
1117 1235 2.259439 GCAGCAGCAGCACAAGAGT 61.259 57.895 4.63 0.00 45.49 3.24
1120 1238 1.966972 AGAGCAGCAGCAGCACAAG 60.967 57.895 12.92 0.00 45.49 3.16
1124 1242 1.105167 AAAACAGAGCAGCAGCAGCA 61.105 50.000 12.92 0.00 45.49 4.41
1125 1243 0.663568 CAAAACAGAGCAGCAGCAGC 60.664 55.000 3.17 0.46 45.49 5.25
1126 1244 0.663568 GCAAAACAGAGCAGCAGCAG 60.664 55.000 3.17 0.00 45.49 4.24
1214 1343 4.147322 GACCATCGTTGCCGCACG 62.147 66.667 0.00 0.46 41.78 5.34
1215 1344 2.740714 GAGACCATCGTTGCCGCAC 61.741 63.158 0.00 0.00 0.00 5.34
1216 1345 2.434185 GAGACCATCGTTGCCGCA 60.434 61.111 0.00 0.00 0.00 5.69
1226 1355 1.339055 CCCATGACACGTTGAGACCAT 60.339 52.381 0.00 0.00 0.00 3.55
1257 1386 1.699656 CTTCCCATTCGCAGCAGTCG 61.700 60.000 0.00 0.00 0.00 4.18
1267 1396 1.303309 CAGACGATGCCTTCCCATTC 58.697 55.000 0.00 0.00 0.00 2.67
1343 1472 0.466922 GGCAAGGGATGGTGAGATGG 60.467 60.000 0.00 0.00 0.00 3.51
1350 1479 2.311542 TGTAAGATTGGCAAGGGATGGT 59.688 45.455 5.96 0.00 0.00 3.55
1359 1488 1.289160 AGAGCCCTGTAAGATTGGCA 58.711 50.000 1.86 0.00 40.72 4.92
1361 1490 2.019984 GCAAGAGCCCTGTAAGATTGG 58.980 52.381 0.00 0.00 31.35 3.16
1374 1503 2.284190 GATAGGTTGAGGTGCAAGAGC 58.716 52.381 0.00 0.00 37.12 4.09
1392 1521 4.870636 TGCCTTCAAGATAATTGTGGGAT 58.129 39.130 0.00 0.00 0.00 3.85
1398 1527 4.276926 GGTAGGCTGCCTTCAAGATAATTG 59.723 45.833 28.55 0.00 34.61 2.32
1403 1532 1.211457 CTGGTAGGCTGCCTTCAAGAT 59.789 52.381 28.55 2.57 34.61 2.40
1404 1533 0.615331 CTGGTAGGCTGCCTTCAAGA 59.385 55.000 28.55 5.03 34.61 3.02
1432 1561 0.976641 ACGATGCTTCTGGAGGACAA 59.023 50.000 0.00 0.00 0.00 3.18
1436 1565 1.472376 GGAAGACGATGCTTCTGGAGG 60.472 57.143 13.85 0.00 42.96 4.30
1450 1579 2.094494 TGAAGCTGACATCGAGGAAGAC 60.094 50.000 3.06 0.00 0.00 3.01
1452 1581 2.662006 TGAAGCTGACATCGAGGAAG 57.338 50.000 3.06 1.86 0.00 3.46
1453 1582 2.612972 GGTTGAAGCTGACATCGAGGAA 60.613 50.000 3.06 0.00 0.00 3.36
1500 1629 7.651027 AGGAAAACTATGATTTGAGGATTGG 57.349 36.000 0.00 0.00 0.00 3.16
1518 1647 9.396022 GAGATATTCAACACCTTGATAGGAAAA 57.604 33.333 0.00 0.00 45.05 2.29
1525 1654 6.182627 TGCTTGAGATATTCAACACCTTGAT 58.817 36.000 0.00 0.00 40.82 2.57
1528 1657 6.006449 AGTTGCTTGAGATATTCAACACCTT 58.994 36.000 0.00 0.00 40.82 3.50
1534 1663 6.372659 GTGAAGGAGTTGCTTGAGATATTCAA 59.627 38.462 0.00 1.96 43.40 2.69
1551 1680 0.037232 GGAACGGTCCTGTGAAGGAG 60.037 60.000 13.76 0.00 41.24 3.69
1577 1706 3.008049 ACTCTTCGTAGCCTTCCATGTTT 59.992 43.478 0.00 0.00 0.00 2.83
1590 1719 2.515854 AGAGCAACCAGACTCTTCGTA 58.484 47.619 0.00 0.00 40.35 3.43
1598 1727 2.169832 TGCACTAAGAGCAACCAGAC 57.830 50.000 0.00 0.00 39.39 3.51
1741 1870 1.669779 CTTTAGCACTCTCAGCATGGC 59.330 52.381 0.00 0.00 36.16 4.40
1854 1984 2.162681 CTGGAACCATCAAGAACACCC 58.837 52.381 0.00 0.00 0.00 4.61
1964 7377 4.020218 TGTCCAAGTAGAGTTCCTCCAATG 60.020 45.833 0.00 0.00 0.00 2.82
2061 7474 5.510861 GCTAAGATCCCCGATAAAGCTGTTA 60.511 44.000 0.00 0.00 0.00 2.41
2130 7543 4.553330 TGGACCAGTGAAGAGGTTTATC 57.447 45.455 0.00 0.00 38.50 1.75
2133 7546 3.884037 ATTGGACCAGTGAAGAGGTTT 57.116 42.857 0.00 0.00 38.50 3.27
2239 7653 1.494960 GAGAGGGACCTGAGATTGCT 58.505 55.000 0.00 0.00 0.00 3.91
2355 7772 5.163077 TGGTATGGTTTCACCCTTGAAGTTA 60.163 40.000 0.00 0.00 42.79 2.24
2602 8019 2.035704 TCGGCAACTTTGTCAATGCAAT 59.964 40.909 10.87 0.00 40.51 3.56
2628 8045 2.223572 CGCAACATTTTCCCCTGATAGC 60.224 50.000 0.00 0.00 0.00 2.97
2636 8053 2.403259 CCAACTTCGCAACATTTTCCC 58.597 47.619 0.00 0.00 0.00 3.97
2649 8066 1.241990 GGAACTTCGGGCCCAACTTC 61.242 60.000 24.92 15.47 0.00 3.01
2738 9570 8.918202 ACCAGTGAAATTATTGTTGTCTAGAA 57.082 30.769 0.00 0.00 0.00 2.10
2800 9632 2.092323 GGAGCTTAAATTGAGGCCGTT 58.908 47.619 0.00 0.00 0.00 4.44
2854 9686 1.008538 GCAGGTTTGTGAGGTTGCG 60.009 57.895 0.00 0.00 0.00 4.85
2944 9776 5.163513 GTTGCTGGAAACATCAAATGTAGG 58.836 41.667 0.00 0.00 46.88 3.18
2963 9795 0.324943 TGGTCCTTCTAGCCTGTTGC 59.675 55.000 0.00 0.00 41.71 4.17
2991 9823 5.485353 TGAGAATGTATGAAACTGTCCTCCT 59.515 40.000 0.00 0.00 0.00 3.69
3062 9894 2.109126 GTGGAGGTGCAATCGAGGC 61.109 63.158 4.99 4.99 0.00 4.70
3102 9934 0.741574 ACAAGTTGTGACGCCGTGAA 60.742 50.000 7.96 0.00 0.00 3.18
3129 9961 4.503991 CCCTAGGTGATTCCAATGACTAGC 60.504 50.000 8.29 0.00 39.02 3.42
3149 9981 1.558756 CAAGAGCAATGAGTCCTCCCT 59.441 52.381 0.00 0.00 0.00 4.20
3179 10011 2.577700 ACCGTGCAATAAGGAAACACA 58.422 42.857 5.88 0.00 0.00 3.72
3250 10082 7.237173 CGTTGAGAACTTAAACATCTTCATCC 58.763 38.462 0.00 0.00 0.00 3.51
3347 10181 3.326747 GAACGACCTGAAGCAATACAGT 58.673 45.455 0.00 0.00 32.93 3.55
3361 10210 1.087501 GAGCAGAATTGGGAACGACC 58.912 55.000 0.00 0.00 38.08 4.79
3418 10267 4.825634 ACATTACACCCTAGATCGATCGAA 59.174 41.667 23.50 11.03 0.00 3.71
3493 10342 6.985653 ACTTCATATACTGGCAGTGATACT 57.014 37.500 29.65 11.28 0.00 2.12
3494 10343 7.887381 ACTACTTCATATACTGGCAGTGATAC 58.113 38.462 29.65 0.00 0.00 2.24
3524 10373 5.510674 CGTGAAGACACATTTAGTACGTAGG 59.489 44.000 0.00 0.00 46.20 3.18
3525 10374 5.003214 GCGTGAAGACACATTTAGTACGTAG 59.997 44.000 0.00 0.00 46.20 3.51
3529 10378 5.779806 ATGCGTGAAGACACATTTAGTAC 57.220 39.130 0.00 0.00 46.20 2.73
3530 10379 6.425417 TGAAATGCGTGAAGACACATTTAGTA 59.575 34.615 0.00 0.00 46.20 1.82
3531 10380 5.238432 TGAAATGCGTGAAGACACATTTAGT 59.762 36.000 0.00 0.00 46.20 2.24
3532 10381 5.688823 TGAAATGCGTGAAGACACATTTAG 58.311 37.500 0.00 0.00 46.20 1.85
3566 10415 8.127150 AGAGGATTTAAACATTTAGCTGCTTT 57.873 30.769 7.79 0.00 0.00 3.51
3577 10426 9.381038 TCCTAGCTACATAGAGGATTTAAACAT 57.619 33.333 0.00 0.00 33.05 2.71
3578 10427 8.639761 GTCCTAGCTACATAGAGGATTTAAACA 58.360 37.037 4.00 0.00 40.19 2.83
3580 10429 9.080097 GAGTCCTAGCTACATAGAGGATTTAAA 57.920 37.037 4.00 0.00 40.19 1.52
3581 10430 8.225416 TGAGTCCTAGCTACATAGAGGATTTAA 58.775 37.037 4.00 0.00 40.19 1.52
3582 10431 7.756614 TGAGTCCTAGCTACATAGAGGATTTA 58.243 38.462 4.00 0.00 40.19 1.40
3583 10432 6.615617 TGAGTCCTAGCTACATAGAGGATTT 58.384 40.000 4.00 0.00 40.19 2.17
3584 10433 6.207509 TGAGTCCTAGCTACATAGAGGATT 57.792 41.667 4.00 0.00 40.19 3.01
3585 10434 5.851808 TGAGTCCTAGCTACATAGAGGAT 57.148 43.478 4.00 0.00 40.19 3.24
3586 10435 5.378332 GTTGAGTCCTAGCTACATAGAGGA 58.622 45.833 0.00 0.00 35.69 3.71
3587 10436 4.214545 CGTTGAGTCCTAGCTACATAGAGG 59.785 50.000 0.00 0.00 0.00 3.69
3588 10437 4.319911 GCGTTGAGTCCTAGCTACATAGAG 60.320 50.000 0.00 0.00 0.00 2.43
3589 10438 3.564644 GCGTTGAGTCCTAGCTACATAGA 59.435 47.826 0.00 0.00 0.00 1.98
3590 10439 3.566322 AGCGTTGAGTCCTAGCTACATAG 59.434 47.826 0.00 0.00 36.28 2.23
3591 10440 3.552875 AGCGTTGAGTCCTAGCTACATA 58.447 45.455 0.00 0.00 36.28 2.29
3592 10441 2.379972 AGCGTTGAGTCCTAGCTACAT 58.620 47.619 0.00 0.00 36.28 2.29
3593 10442 1.835494 AGCGTTGAGTCCTAGCTACA 58.165 50.000 0.00 0.00 36.28 2.74
3594 10443 2.943449 AAGCGTTGAGTCCTAGCTAC 57.057 50.000 4.17 0.00 37.15 3.58
3595 10444 2.165845 GGAAAGCGTTGAGTCCTAGCTA 59.834 50.000 0.00 0.00 37.15 3.32
3596 10445 1.066787 GGAAAGCGTTGAGTCCTAGCT 60.067 52.381 0.00 0.00 40.20 3.32
3597 10446 1.337823 TGGAAAGCGTTGAGTCCTAGC 60.338 52.381 0.00 0.00 0.00 3.42
3598 10447 2.288825 TGTGGAAAGCGTTGAGTCCTAG 60.289 50.000 0.00 0.00 0.00 3.02
3599 10448 1.689813 TGTGGAAAGCGTTGAGTCCTA 59.310 47.619 0.00 0.00 0.00 2.94
3600 10449 0.468226 TGTGGAAAGCGTTGAGTCCT 59.532 50.000 0.00 0.00 0.00 3.85
3601 10450 0.868406 CTGTGGAAAGCGTTGAGTCC 59.132 55.000 0.00 0.00 0.00 3.85
3602 10451 1.865865 TCTGTGGAAAGCGTTGAGTC 58.134 50.000 0.00 0.00 0.00 3.36
3603 10452 2.325583 TTCTGTGGAAAGCGTTGAGT 57.674 45.000 0.00 0.00 0.00 3.41
3604 10453 3.814945 GATTTCTGTGGAAAGCGTTGAG 58.185 45.455 0.00 0.00 43.52 3.02
3645 10494 0.033503 CTGGTGTACCCAAATCCCCC 60.034 60.000 0.00 0.00 44.65 5.40
3648 10497 3.713826 TTCTCTGGTGTACCCAAATCC 57.286 47.619 0.00 0.00 44.65 3.01
3649 10498 3.871594 CGATTCTCTGGTGTACCCAAATC 59.128 47.826 12.06 12.06 44.65 2.17
3650 10499 3.873910 CGATTCTCTGGTGTACCCAAAT 58.126 45.455 0.00 2.69 44.65 2.32
3651 10500 2.614481 GCGATTCTCTGGTGTACCCAAA 60.614 50.000 0.00 0.00 44.65 3.28
3652 10501 1.066430 GCGATTCTCTGGTGTACCCAA 60.066 52.381 0.00 0.00 44.65 4.12
3653 10502 0.535335 GCGATTCTCTGGTGTACCCA 59.465 55.000 0.00 3.45 42.51 4.51
3654 10503 0.527817 CGCGATTCTCTGGTGTACCC 60.528 60.000 0.00 0.00 34.29 3.69
3655 10504 0.172803 ACGCGATTCTCTGGTGTACC 59.827 55.000 15.93 0.00 0.00 3.34
3656 10505 2.448219 GTACGCGATTCTCTGGTGTAC 58.552 52.381 15.93 0.00 40.68 2.90
3657 10506 1.402968 GGTACGCGATTCTCTGGTGTA 59.597 52.381 15.93 0.00 0.00 2.90
3658 10507 0.172803 GGTACGCGATTCTCTGGTGT 59.827 55.000 15.93 0.00 0.00 4.16
3659 10508 0.456221 AGGTACGCGATTCTCTGGTG 59.544 55.000 15.93 0.00 0.00 4.17
3661 10510 1.333881 CGTAGGTACGCGATTCTCTGG 60.334 57.143 15.93 0.00 43.14 3.86
3662 10511 2.020079 CGTAGGTACGCGATTCTCTG 57.980 55.000 15.93 0.00 43.14 3.35
3663 10512 2.492012 ATCGTAGGTACGCGATTCTCT 58.508 47.619 15.93 5.27 45.18 3.10
3664 10513 2.965477 ATCGTAGGTACGCGATTCTC 57.035 50.000 15.93 0.00 45.18 2.87
3674 10529 1.406539 GAGCGGTCCAAATCGTAGGTA 59.593 52.381 2.39 0.00 0.00 3.08
3677 10532 1.480219 GCGAGCGGTCCAAATCGTAG 61.480 60.000 9.39 0.00 37.49 3.51
3752 10641 2.593956 GGTTTCCCCCACGAGCTCT 61.594 63.158 12.85 0.00 0.00 4.09
3824 10713 1.139095 CCCTCGCCACTCGTTCTAC 59.861 63.158 0.00 0.00 39.67 2.59
3830 10719 4.069232 TTGAGCCCTCGCCACTCG 62.069 66.667 0.00 0.00 40.15 4.18
3846 10735 0.876399 GCGTGTTCCATTTACCCGTT 59.124 50.000 0.00 0.00 0.00 4.44
3854 10743 3.722295 CGGCGTGCGTGTTCCATT 61.722 61.111 0.00 0.00 0.00 3.16
3856 10745 4.281947 TACGGCGTGCGTGTTCCA 62.282 61.111 24.86 0.00 0.00 3.53
3988 10892 8.971321 CGTGATTTCAGAAGAATGAACATTTTT 58.029 29.630 1.56 2.64 38.87 1.94
3989 10893 7.596248 CCGTGATTTCAGAAGAATGAACATTTT 59.404 33.333 1.56 0.00 38.87 1.82
3990 10894 7.040478 TCCGTGATTTCAGAAGAATGAACATTT 60.040 33.333 1.56 0.00 38.87 2.32
3991 10895 6.430925 TCCGTGATTTCAGAAGAATGAACATT 59.569 34.615 0.00 0.00 38.87 2.71
3992 10896 5.939883 TCCGTGATTTCAGAAGAATGAACAT 59.060 36.000 0.00 0.00 38.87 2.71
3993 10897 5.304778 TCCGTGATTTCAGAAGAATGAACA 58.695 37.500 0.00 0.00 38.87 3.18
3994 10898 5.862924 TCCGTGATTTCAGAAGAATGAAC 57.137 39.130 0.00 0.00 38.87 3.18
3995 10899 7.452880 AAATCCGTGATTTCAGAAGAATGAA 57.547 32.000 6.17 0.00 37.68 2.57
3996 10900 7.452880 AAAATCCGTGATTTCAGAAGAATGA 57.547 32.000 10.88 0.00 40.77 2.57
4105 11009 1.304962 GGATGGACGCCCCCTTTTT 60.305 57.895 0.00 0.00 0.00 1.94
4106 11010 2.359011 GGATGGACGCCCCCTTTT 59.641 61.111 0.00 0.00 0.00 2.27
4107 11011 3.739613 GGGATGGACGCCCCCTTT 61.740 66.667 0.00 0.00 39.81 3.11
4112 11016 3.936772 TTTGCAGGGATGGACGCCC 62.937 63.158 0.00 0.00 46.40 6.13
4113 11017 1.754234 ATTTGCAGGGATGGACGCC 60.754 57.895 0.00 0.00 0.00 5.68
4114 11018 1.434696 CATTTGCAGGGATGGACGC 59.565 57.895 0.00 0.00 0.00 5.19
4115 11019 2.109431 CCATTTGCAGGGATGGACG 58.891 57.895 16.57 0.00 44.49 4.79
4123 11027 3.777910 GGCTGGCCCATTTGCAGG 61.778 66.667 0.00 0.00 0.00 4.85
4133 11037 3.365265 CGTCAGTTTGGGCTGGCC 61.365 66.667 14.23 14.23 37.79 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.