Multiple sequence alignment - TraesCS7B01G334500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G334500 chr7B 100.000 3079 0 0 1 3079 589734419 589737497 0.000000e+00 5686.0
1 TraesCS7B01G334500 chr7B 95.937 1846 38 14 849 2689 589696312 589694499 0.000000e+00 2959.0
2 TraesCS7B01G334500 chr7B 95.231 1887 48 9 836 2713 588878309 588876456 0.000000e+00 2948.0
3 TraesCS7B01G334500 chr7B 95.909 1711 48 8 870 2578 589919915 589921605 0.000000e+00 2752.0
4 TraesCS7B01G334500 chr7B 92.887 1912 57 17 818 2698 588823563 588821700 0.000000e+00 2704.0
5 TraesCS7B01G334500 chr7B 86.589 343 23 3 168 509 588824117 588823797 1.050000e-94 357.0
6 TraesCS7B01G334500 chr7B 87.742 155 5 2 532 672 589696596 589696442 5.280000e-38 169.0
7 TraesCS7B01G334500 chr7B 100.000 39 0 0 722 760 588878318 588878280 4.260000e-09 73.1
8 TraesCS7B01G334500 chr7B 100.000 28 0 0 845 872 589919871 589919898 6.000000e-03 52.8
9 TraesCS7B01G334500 chr1B 95.315 1985 62 10 836 2812 133124202 133122241 0.000000e+00 3121.0
10 TraesCS7B01G334500 chr1B 90.751 2011 95 44 782 2755 133111620 133109664 0.000000e+00 2599.0
11 TraesCS7B01G334500 chr1B 90.710 2013 96 36 782 2755 426482215 426480255 0.000000e+00 2597.0
12 TraesCS7B01G334500 chr1B 86.798 1015 78 26 789 1775 426497115 426496129 0.000000e+00 1081.0
13 TraesCS7B01G334500 chr1B 93.542 511 23 3 1 509 426482984 426482482 0.000000e+00 752.0
14 TraesCS7B01G334500 chr1B 87.745 408 34 6 110 509 426497847 426497448 2.160000e-126 462.0
15 TraesCS7B01G334500 chr1B 95.455 242 11 0 113 354 133112238 133111997 1.340000e-103 387.0
16 TraesCS7B01G334500 chr1B 91.729 266 22 0 2814 3079 398839856 398839591 1.350000e-98 370.0
17 TraesCS7B01G334500 chr1B 90.672 268 23 1 2814 3079 426481504 426481237 3.780000e-94 355.0
18 TraesCS7B01G334500 chr1B 87.050 278 27 7 110 382 133125229 133124956 3.860000e-79 305.0
19 TraesCS7B01G334500 chr1B 98.450 129 2 0 381 509 133111996 133111868 8.590000e-56 228.0
20 TraesCS7B01G334500 chr1B 88.298 188 6 4 516 690 426482416 426482232 8.650000e-51 211.0
21 TraesCS7B01G334500 chr1B 98.851 87 1 0 516 602 133111773 133111687 4.110000e-34 156.0
22 TraesCS7B01G334500 chr1B 100.000 39 0 0 722 760 133124211 133124173 4.260000e-09 73.1
23 TraesCS7B01G334500 chr1B 89.091 55 2 2 674 725 398961771 398961824 7.130000e-07 65.8
24 TraesCS7B01G334500 chr1B 100.000 33 0 0 2723 2755 426495180 426495148 9.220000e-06 62.1
25 TraesCS7B01G334500 chr7A 93.679 1946 90 17 870 2812 628385914 628383999 0.000000e+00 2881.0
26 TraesCS7B01G334500 chr7A 94.989 1776 63 17 871 2643 627008718 627006966 0.000000e+00 2763.0
27 TraesCS7B01G334500 chr7A 98.124 853 8 1 1768 2612 627231670 627230818 0.000000e+00 1480.0
28 TraesCS7B01G334500 chr7A 87.153 864 82 12 885 1725 594434438 594435295 0.000000e+00 953.0
29 TraesCS7B01G334500 chr7A 85.144 902 91 26 870 1763 169958473 169957607 0.000000e+00 883.0
30 TraesCS7B01G334500 chr7A 88.279 401 33 4 110 505 627120284 627119893 4.650000e-128 468.0
31 TraesCS7B01G334500 chr7A 88.030 401 35 3 110 505 627046097 627045705 2.160000e-126 462.0
32 TraesCS7B01G334500 chr7A 93.258 267 16 2 2814 3079 626992050 626991785 2.880000e-105 392.0
33 TraesCS7B01G334500 chr7A 92.857 266 19 0 2814 3079 628487533 628487268 1.340000e-103 387.0
34 TraesCS7B01G334500 chr7A 91.353 266 23 0 2814 3079 628521000 628521265 6.270000e-97 364.0
35 TraesCS7B01G334500 chr7A 90.977 266 23 1 2814 3079 628385301 628385037 1.050000e-94 357.0
36 TraesCS7B01G334500 chr7A 95.735 211 7 1 110 318 627009304 627009094 3.800000e-89 339.0
37 TraesCS7B01G334500 chr7A 78.683 319 52 12 123 432 627052026 627051715 6.730000e-47 198.0
38 TraesCS7B01G334500 chr7A 89.474 76 8 0 516 591 626992879 626992804 2.530000e-16 97.1
39 TraesCS7B01G334500 chr7A 100.000 39 0 0 722 760 628385984 628385946 4.260000e-09 73.1
40 TraesCS7B01G334500 chr7A 100.000 30 0 0 731 760 627008772 627008743 4.290000e-04 56.5
41 TraesCS7B01G334500 chr5D 98.071 1037 12 1 1784 2812 289354394 289353358 0.000000e+00 1797.0
42 TraesCS7B01G334500 chr5D 97.946 925 11 1 1784 2700 289420201 289419277 0.000000e+00 1596.0
43 TraesCS7B01G334500 chr5D 95.673 855 32 2 924 1775 289421105 289420253 0.000000e+00 1369.0
44 TraesCS7B01G334500 chr5D 95.423 852 31 4 924 1775 289355289 289354446 0.000000e+00 1351.0
45 TraesCS7B01G334500 chr5D 97.421 504 4 2 1784 2279 289726470 289725968 0.000000e+00 850.0
46 TraesCS7B01G334500 chr5D 91.729 266 22 0 2814 3079 331838316 331838581 1.350000e-98 370.0
47 TraesCS7B01G334500 chr5D 90.602 266 25 0 2814 3079 289354712 289354447 1.360000e-93 353.0
48 TraesCS7B01G334500 chr5D 94.787 211 9 1 110 318 289421729 289421519 8.230000e-86 327.0
49 TraesCS7B01G334500 chr5D 83.136 338 33 13 110 428 289497110 289496778 1.400000e-73 287.0
50 TraesCS7B01G334500 chr5D 86.239 109 10 4 516 619 289727385 289727277 2.510000e-21 113.0
51 TraesCS7B01G334500 chr5D 89.041 73 8 0 437 509 289727562 289727490 1.180000e-14 91.6
52 TraesCS7B01G334500 chr5D 100.000 29 0 0 731 759 289727238 289727210 2.000000e-03 54.7
53 TraesCS7B01G334500 chr5D 100.000 28 0 0 1767 1794 289354420 289354393 6.000000e-03 52.8
54 TraesCS7B01G334500 chr5D 100.000 28 0 0 1767 1794 289420227 289420200 6.000000e-03 52.8
55 TraesCS7B01G334500 chr6A 97.189 925 17 2 1784 2700 107265294 107266217 0.000000e+00 1555.0
56 TraesCS7B01G334500 chr6A 90.152 264 19 4 110 372 107263562 107263819 1.370000e-88 337.0
57 TraesCS7B01G334500 chr6A 86.014 143 12 4 358 500 107263837 107263971 2.470000e-31 147.0
58 TraesCS7B01G334500 chr7D 98.307 827 6 2 1784 2602 545266175 545265349 0.000000e+00 1443.0
59 TraesCS7B01G334500 chr7D 89.294 822 75 9 885 1701 545650456 545651269 0.000000e+00 1018.0
60 TraesCS7B01G334500 chr7D 91.353 266 23 0 2814 3079 545647632 545647897 6.270000e-97 364.0
61 TraesCS7B01G334500 chr7D 82.353 119 7 4 532 636 545650151 545650269 1.180000e-14 91.6
62 TraesCS7B01G334500 chr2B 88.137 961 79 22 789 1716 182133939 182132981 0.000000e+00 1110.0
63 TraesCS7B01G334500 chr2B 85.250 400 28 8 110 509 127790839 127790471 1.730000e-102 383.0
64 TraesCS7B01G334500 chr2B 85.000 400 29 8 110 509 182134504 182134136 8.060000e-101 377.0
65 TraesCS7B01G334500 chr2B 84.190 253 9 13 2591 2812 137347537 137347285 1.860000e-52 217.0
66 TraesCS7B01G334500 chr2B 100.000 38 0 0 722 759 135512536 135512573 1.530000e-08 71.3
67 TraesCS7B01G334500 chr2B 100.000 29 0 0 731 759 182133892 182133864 2.000000e-03 54.7
68 TraesCS7B01G334500 chr2D 96.923 65 1 1 2677 2741 85249074 85249011 1.170000e-19 108.0
69 TraesCS7B01G334500 chr2A 98.214 56 0 1 2677 2732 86060079 86060025 2.530000e-16 97.1
70 TraesCS7B01G334500 chr4A 96.429 56 1 1 2677 2732 349804633 349804579 1.180000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G334500 chr7B 589734419 589737497 3078 False 5686.000000 5686 100.000000 1 3079 1 chr7B.!!$F1 3078
1 TraesCS7B01G334500 chr7B 589694499 589696596 2097 True 1564.000000 2959 91.839500 532 2689 2 chr7B.!!$R3 2157
2 TraesCS7B01G334500 chr7B 588821700 588824117 2417 True 1530.500000 2704 89.738000 168 2698 2 chr7B.!!$R1 2530
3 TraesCS7B01G334500 chr7B 588876456 588878318 1862 True 1510.550000 2948 97.615500 722 2713 2 chr7B.!!$R2 1991
4 TraesCS7B01G334500 chr7B 589919871 589921605 1734 False 1402.400000 2752 97.954500 845 2578 2 chr7B.!!$F2 1733
5 TraesCS7B01G334500 chr1B 133122241 133125229 2988 True 1166.366667 3121 94.121667 110 2812 3 chr1B.!!$R3 2702
6 TraesCS7B01G334500 chr1B 426480255 426482984 2729 True 978.750000 2597 90.805500 1 3079 4 chr1B.!!$R4 3078
7 TraesCS7B01G334500 chr1B 133109664 133112238 2574 True 842.500000 2599 95.876750 113 2755 4 chr1B.!!$R2 2642
8 TraesCS7B01G334500 chr1B 426495148 426497847 2699 True 535.033333 1081 91.514333 110 2755 3 chr1B.!!$R5 2645
9 TraesCS7B01G334500 chr7A 627230818 627231670 852 True 1480.000000 1480 98.124000 1768 2612 1 chr7A.!!$R5 844
10 TraesCS7B01G334500 chr7A 628383999 628385984 1985 True 1103.700000 2881 94.885333 722 3079 3 chr7A.!!$R9 2357
11 TraesCS7B01G334500 chr7A 627006966 627009304 2338 True 1052.833333 2763 96.908000 110 2643 3 chr7A.!!$R8 2533
12 TraesCS7B01G334500 chr7A 594434438 594435295 857 False 953.000000 953 87.153000 885 1725 1 chr7A.!!$F1 840
13 TraesCS7B01G334500 chr7A 169957607 169958473 866 True 883.000000 883 85.144000 870 1763 1 chr7A.!!$R1 893
14 TraesCS7B01G334500 chr7A 626991785 626992879 1094 True 244.550000 392 91.366000 516 3079 2 chr7A.!!$R7 2563
15 TraesCS7B01G334500 chr5D 289353358 289355289 1931 True 888.450000 1797 96.024000 924 3079 4 chr5D.!!$R2 2155
16 TraesCS7B01G334500 chr5D 289419277 289421729 2452 True 836.200000 1596 97.101500 110 2700 4 chr5D.!!$R3 2590
17 TraesCS7B01G334500 chr5D 289725968 289727562 1594 True 277.325000 850 93.175250 437 2279 4 chr5D.!!$R4 1842
18 TraesCS7B01G334500 chr6A 107263562 107266217 2655 False 679.666667 1555 91.118333 110 2700 3 chr6A.!!$F1 2590
19 TraesCS7B01G334500 chr7D 545265349 545266175 826 True 1443.000000 1443 98.307000 1784 2602 1 chr7D.!!$R1 818
20 TraesCS7B01G334500 chr7D 545647632 545651269 3637 False 491.200000 1018 87.666667 532 3079 3 chr7D.!!$F1 2547
21 TraesCS7B01G334500 chr2B 182132981 182134504 1523 True 513.900000 1110 91.045667 110 1716 3 chr2B.!!$R3 1606

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
769 3153 0.106419 TTCAAAAACCTGGGCCGACT 60.106 50.0 0.00 0.0 0.0 4.18 F
770 3154 0.536460 TCAAAAACCTGGGCCGACTC 60.536 55.0 0.00 0.0 0.0 3.36 F
838 3222 0.724549 TAGTGCGCGTTTTAGCCATG 59.275 50.0 8.43 0.0 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1946 4680 4.022416 AGACTCTGCTGACACTCTTGTAAG 60.022 45.833 0.00 0.00 37.28 2.34 R
1999 4733 4.503007 GTGTAACTATGCCGTACACATCTG 59.497 45.833 8.02 0.96 40.31 2.90 R
2830 5565 1.369448 CTCGGCTACGCTCGATGTC 60.369 63.158 0.00 0.00 40.69 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 103 0.249398 GGCGTATGTGGAAGGACAGT 59.751 55.000 0.00 0.00 0.00 3.55
140 142 3.119459 GCTCCAATGTCGACTAGAGTTCA 60.119 47.826 17.92 0.00 0.00 3.18
354 373 5.627172 TCAGCTACATTGTAATTCAAACGC 58.373 37.500 0.00 0.00 39.62 4.84
506 558 0.523072 CCGGCATGTTCAACTTCAGG 59.477 55.000 0.00 0.00 0.00 3.86
514 713 4.705110 TGTTCAACTTCAGGATCTCCAA 57.295 40.909 0.00 0.00 38.89 3.53
543 2532 5.139727 ACAAACACATCAGGATCTCCAAAA 58.860 37.500 0.00 0.00 38.89 2.44
706 3018 5.233476 CCATTAGTGCGCGTTTAGATTTCTA 59.767 40.000 8.43 0.00 0.00 2.10
716 3031 6.415867 CGCGTTTAGATTTCTAATACTCGGAA 59.584 38.462 0.00 0.00 38.16 4.30
718 3033 8.762426 GCGTTTAGATTTCTAATACTCGGAATT 58.238 33.333 1.08 0.00 38.16 2.17
761 3145 3.455619 CGACTCGGATTCAAAAACCTG 57.544 47.619 0.00 0.00 0.00 4.00
763 3147 2.488153 GACTCGGATTCAAAAACCTGGG 59.512 50.000 0.00 0.00 0.00 4.45
764 3148 1.202348 CTCGGATTCAAAAACCTGGGC 59.798 52.381 0.00 0.00 0.00 5.36
765 3149 0.246360 CGGATTCAAAAACCTGGGCC 59.754 55.000 0.00 0.00 0.00 5.80
766 3150 0.246360 GGATTCAAAAACCTGGGCCG 59.754 55.000 0.00 0.00 0.00 6.13
767 3151 1.253100 GATTCAAAAACCTGGGCCGA 58.747 50.000 0.00 0.00 0.00 5.54
768 3152 0.966179 ATTCAAAAACCTGGGCCGAC 59.034 50.000 0.00 0.00 0.00 4.79
769 3153 0.106419 TTCAAAAACCTGGGCCGACT 60.106 50.000 0.00 0.00 0.00 4.18
770 3154 0.536460 TCAAAAACCTGGGCCGACTC 60.536 55.000 0.00 0.00 0.00 3.36
771 3155 1.599797 AAAAACCTGGGCCGACTCG 60.600 57.895 0.00 0.00 0.00 4.18
786 3170 4.443850 CGACTCGGATTCAAATTGCTAG 57.556 45.455 0.00 0.00 0.00 3.42
787 3171 3.865745 CGACTCGGATTCAAATTGCTAGT 59.134 43.478 0.00 0.00 0.00 2.57
788 3172 4.330074 CGACTCGGATTCAAATTGCTAGTT 59.670 41.667 0.00 0.00 0.00 2.24
789 3173 5.551760 ACTCGGATTCAAATTGCTAGTTG 57.448 39.130 1.83 1.83 0.00 3.16
790 3174 4.396166 ACTCGGATTCAAATTGCTAGTTGG 59.604 41.667 8.39 0.00 30.58 3.77
791 3175 4.584874 TCGGATTCAAATTGCTAGTTGGA 58.415 39.130 8.39 0.00 30.58 3.53
792 3176 5.007034 TCGGATTCAAATTGCTAGTTGGAA 58.993 37.500 8.39 2.89 30.58 3.53
793 3177 5.475220 TCGGATTCAAATTGCTAGTTGGAAA 59.525 36.000 8.39 0.00 30.58 3.13
794 3178 5.801947 CGGATTCAAATTGCTAGTTGGAAAG 59.198 40.000 8.39 0.00 30.58 2.62
795 3179 6.349280 CGGATTCAAATTGCTAGTTGGAAAGA 60.349 38.462 8.39 0.00 30.58 2.52
796 3180 7.550712 GGATTCAAATTGCTAGTTGGAAAGAT 58.449 34.615 8.39 0.00 30.58 2.40
797 3181 8.037166 GGATTCAAATTGCTAGTTGGAAAGATT 58.963 33.333 8.39 0.00 30.58 2.40
798 3182 8.992835 ATTCAAATTGCTAGTTGGAAAGATTC 57.007 30.769 8.39 0.00 30.58 2.52
799 3183 7.523293 TCAAATTGCTAGTTGGAAAGATTCA 57.477 32.000 8.39 0.00 30.58 2.57
800 3184 8.125978 TCAAATTGCTAGTTGGAAAGATTCAT 57.874 30.769 8.39 0.00 30.58 2.57
801 3185 8.246180 TCAAATTGCTAGTTGGAAAGATTCATC 58.754 33.333 8.39 0.00 30.58 2.92
802 3186 7.951347 AATTGCTAGTTGGAAAGATTCATCT 57.049 32.000 0.00 0.00 39.22 2.90
804 3188 9.466497 AATTGCTAGTTGGAAAGATTCATCTTA 57.534 29.630 2.41 0.00 45.83 2.10
805 3189 9.638176 ATTGCTAGTTGGAAAGATTCATCTTAT 57.362 29.630 2.41 0.00 45.83 1.73
807 3191 9.547753 TGCTAGTTGGAAAGATTCATCTTATAC 57.452 33.333 2.41 0.43 45.83 1.47
808 3192 9.771534 GCTAGTTGGAAAGATTCATCTTATACT 57.228 33.333 2.41 6.71 45.83 2.12
810 3194 8.879342 AGTTGGAAAGATTCATCTTATACTCG 57.121 34.615 2.41 0.00 45.83 4.18
811 3195 7.928706 AGTTGGAAAGATTCATCTTATACTCGG 59.071 37.037 2.41 0.00 45.83 4.63
812 3196 7.597288 TGGAAAGATTCATCTTATACTCGGA 57.403 36.000 2.41 0.00 45.83 4.55
813 3197 8.018537 TGGAAAGATTCATCTTATACTCGGAA 57.981 34.615 2.41 0.00 45.83 4.30
814 3198 8.651389 TGGAAAGATTCATCTTATACTCGGAAT 58.349 33.333 2.41 0.00 45.83 3.01
815 3199 9.495572 GGAAAGATTCATCTTATACTCGGAATT 57.504 33.333 2.41 0.00 45.83 2.17
838 3222 0.724549 TAGTGCGCGTTTTAGCCATG 59.275 50.000 8.43 0.00 0.00 3.66
843 3227 2.798009 CGTTTTAGCCATGCCCGG 59.202 61.111 0.00 0.00 0.00 5.73
922 3370 2.172483 TTGCCGCCACTTCTCTCTCC 62.172 60.000 0.00 0.00 0.00 3.71
1436 4018 2.929116 CAGATGAGCATGCGCGAG 59.071 61.111 12.10 0.00 45.49 5.03
1562 4159 2.668212 CGGCGAAAGGTGGAGCAA 60.668 61.111 0.00 0.00 0.00 3.91
1946 4680 8.964476 TCAATCCCTTTCAGTCATTAGTAATC 57.036 34.615 0.00 0.00 0.00 1.75
1999 4733 2.602257 AGGCAGCAAAAACCTTGTTC 57.398 45.000 0.00 0.00 0.00 3.18
2812 5547 0.108396 TTGCCTGTCACTGCTGCTTA 59.892 50.000 0.00 0.00 0.00 3.09
2813 5548 0.108396 TGCCTGTCACTGCTGCTTAA 59.892 50.000 0.00 0.00 0.00 1.85
2814 5549 0.801251 GCCTGTCACTGCTGCTTAAG 59.199 55.000 0.00 0.00 0.00 1.85
2815 5550 1.446907 CCTGTCACTGCTGCTTAAGG 58.553 55.000 4.29 0.00 0.00 2.69
2816 5551 1.271054 CCTGTCACTGCTGCTTAAGGT 60.271 52.381 4.29 0.00 0.00 3.50
2817 5552 2.072298 CTGTCACTGCTGCTTAAGGTC 58.928 52.381 4.29 0.00 0.00 3.85
2818 5553 1.416030 TGTCACTGCTGCTTAAGGTCA 59.584 47.619 4.29 0.00 0.00 4.02
2819 5554 2.072298 GTCACTGCTGCTTAAGGTCAG 58.928 52.381 4.29 5.24 0.00 3.51
2824 5559 2.755929 CTGCTTAAGGTCAGCCGTC 58.244 57.895 4.29 0.00 40.50 4.79
2825 5560 1.078759 CTGCTTAAGGTCAGCCGTCG 61.079 60.000 4.29 0.00 40.50 5.12
2826 5561 1.810030 GCTTAAGGTCAGCCGTCGG 60.810 63.158 6.99 6.99 40.50 4.79
2867 5602 4.176752 GGAGGCCGGGCGAAAGAT 62.177 66.667 23.81 3.01 0.00 2.40
2868 5603 2.897350 GAGGCCGGGCGAAAGATG 60.897 66.667 23.81 0.00 0.00 2.90
2869 5604 4.489771 AGGCCGGGCGAAAGATGG 62.490 66.667 23.81 0.00 0.00 3.51
2870 5605 4.483243 GGCCGGGCGAAAGATGGA 62.483 66.667 14.21 0.00 0.00 3.41
2871 5606 2.897350 GCCGGGCGAAAGATGGAG 60.897 66.667 1.81 0.00 0.00 3.86
2872 5607 2.897350 CCGGGCGAAAGATGGAGC 60.897 66.667 0.00 0.00 0.00 4.70
2873 5608 2.125147 CGGGCGAAAGATGGAGCA 60.125 61.111 0.00 0.00 0.00 4.26
2874 5609 2.176273 CGGGCGAAAGATGGAGCAG 61.176 63.158 0.00 0.00 0.00 4.24
2875 5610 1.221840 GGGCGAAAGATGGAGCAGA 59.778 57.895 0.00 0.00 0.00 4.26
2876 5611 0.179034 GGGCGAAAGATGGAGCAGAT 60.179 55.000 0.00 0.00 0.00 2.90
2877 5612 0.942962 GGCGAAAGATGGAGCAGATG 59.057 55.000 0.00 0.00 0.00 2.90
2878 5613 0.942962 GCGAAAGATGGAGCAGATGG 59.057 55.000 0.00 0.00 0.00 3.51
2879 5614 0.942962 CGAAAGATGGAGCAGATGGC 59.057 55.000 0.00 0.00 45.30 4.40
2896 5631 2.279851 CGGACACCGTGCAGTTCA 60.280 61.111 0.00 0.00 42.73 3.18
2897 5632 1.885388 CGGACACCGTGCAGTTCAA 60.885 57.895 0.00 0.00 42.73 2.69
2898 5633 1.647084 GGACACCGTGCAGTTCAAC 59.353 57.895 0.00 0.00 0.00 3.18
2899 5634 1.275657 GACACCGTGCAGTTCAACG 59.724 57.895 0.00 0.00 0.00 4.10
2900 5635 1.149361 GACACCGTGCAGTTCAACGA 61.149 55.000 0.00 0.00 0.00 3.85
2901 5636 1.275657 CACCGTGCAGTTCAACGAC 59.724 57.895 0.00 0.00 0.00 4.34
2902 5637 1.885850 ACCGTGCAGTTCAACGACC 60.886 57.895 0.00 0.00 0.00 4.79
2903 5638 2.604174 CCGTGCAGTTCAACGACCC 61.604 63.158 0.00 0.00 0.00 4.46
2904 5639 2.604174 CGTGCAGTTCAACGACCCC 61.604 63.158 0.00 0.00 0.00 4.95
2905 5640 1.227853 GTGCAGTTCAACGACCCCT 60.228 57.895 0.00 0.00 0.00 4.79
2906 5641 1.227823 TGCAGTTCAACGACCCCTG 60.228 57.895 0.00 0.00 0.00 4.45
2907 5642 1.966451 GCAGTTCAACGACCCCTGG 60.966 63.158 0.00 0.00 0.00 4.45
2908 5643 1.752198 CAGTTCAACGACCCCTGGA 59.248 57.895 0.00 0.00 0.00 3.86
2909 5644 0.324943 CAGTTCAACGACCCCTGGAT 59.675 55.000 0.00 0.00 0.00 3.41
2910 5645 0.613777 AGTTCAACGACCCCTGGATC 59.386 55.000 0.00 0.00 0.00 3.36
2911 5646 0.392595 GTTCAACGACCCCTGGATCC 60.393 60.000 4.20 4.20 0.00 3.36
2912 5647 0.838554 TTCAACGACCCCTGGATCCA 60.839 55.000 15.27 15.27 0.00 3.41
2913 5648 0.620410 TCAACGACCCCTGGATCCAT 60.620 55.000 16.63 0.00 0.00 3.41
2914 5649 0.179045 CAACGACCCCTGGATCCATC 60.179 60.000 16.63 9.04 0.00 3.51
2915 5650 0.620410 AACGACCCCTGGATCCATCA 60.620 55.000 16.63 0.00 0.00 3.07
2916 5651 1.338136 ACGACCCCTGGATCCATCAC 61.338 60.000 16.63 4.83 0.00 3.06
2917 5652 1.050988 CGACCCCTGGATCCATCACT 61.051 60.000 16.63 0.00 0.00 3.41
2918 5653 0.761802 GACCCCTGGATCCATCACTC 59.238 60.000 16.63 4.44 0.00 3.51
2919 5654 0.695803 ACCCCTGGATCCATCACTCC 60.696 60.000 16.63 0.00 0.00 3.85
2920 5655 1.750930 CCCTGGATCCATCACTCCG 59.249 63.158 16.63 0.88 34.05 4.63
2921 5656 0.760567 CCCTGGATCCATCACTCCGA 60.761 60.000 16.63 0.00 34.05 4.55
2922 5657 0.390860 CCTGGATCCATCACTCCGAC 59.609 60.000 16.63 0.00 34.05 4.79
2923 5658 1.407936 CTGGATCCATCACTCCGACT 58.592 55.000 16.63 0.00 34.05 4.18
2924 5659 1.759445 CTGGATCCATCACTCCGACTT 59.241 52.381 16.63 0.00 34.05 3.01
2925 5660 1.482182 TGGATCCATCACTCCGACTTG 59.518 52.381 11.44 0.00 34.05 3.16
2926 5661 1.202580 GGATCCATCACTCCGACTTGG 60.203 57.143 6.95 0.00 40.09 3.61
2927 5662 0.179000 ATCCATCACTCCGACTTGGC 59.821 55.000 0.00 0.00 37.80 4.52
2928 5663 1.450312 CCATCACTCCGACTTGGCC 60.450 63.158 0.00 0.00 37.80 5.36
2929 5664 1.296392 CATCACTCCGACTTGGCCA 59.704 57.895 0.00 0.00 37.80 5.36
2930 5665 0.321564 CATCACTCCGACTTGGCCAA 60.322 55.000 19.25 19.25 37.80 4.52
2931 5666 0.036010 ATCACTCCGACTTGGCCAAG 60.036 55.000 38.30 38.30 43.79 3.61
2939 5674 3.170362 CTTGGCCAAGTCCCCTGA 58.830 61.111 33.46 2.24 33.87 3.86
2940 5675 1.001641 CTTGGCCAAGTCCCCTGAG 60.002 63.158 33.46 9.13 33.87 3.35
2941 5676 2.490270 CTTGGCCAAGTCCCCTGAGG 62.490 65.000 33.46 8.43 33.87 3.86
2942 5677 2.610859 GGCCAAGTCCCCTGAGGA 60.611 66.667 0.00 0.00 44.91 3.71
2949 5684 2.364842 TCCCCTGAGGAGCTGCTC 60.365 66.667 26.87 26.87 40.93 4.26
2966 5701 1.466558 GCTCCAAGCAAGACTACAAGC 59.533 52.381 0.00 0.00 41.89 4.01
2967 5702 2.771089 CTCCAAGCAAGACTACAAGCA 58.229 47.619 0.00 0.00 0.00 3.91
2968 5703 3.341823 CTCCAAGCAAGACTACAAGCAT 58.658 45.455 0.00 0.00 0.00 3.79
2969 5704 3.076621 TCCAAGCAAGACTACAAGCATG 58.923 45.455 0.00 0.00 0.00 4.06
2970 5705 2.163010 CCAAGCAAGACTACAAGCATGG 59.837 50.000 0.00 0.00 39.13 3.66
2971 5706 1.457346 AGCAAGACTACAAGCATGGC 58.543 50.000 0.00 0.00 0.00 4.40
2972 5707 0.097674 GCAAGACTACAAGCATGGCG 59.902 55.000 0.00 0.00 0.00 5.69
2973 5708 1.442769 CAAGACTACAAGCATGGCGT 58.557 50.000 0.00 0.00 0.00 5.68
2974 5709 1.806542 CAAGACTACAAGCATGGCGTT 59.193 47.619 0.00 0.00 0.00 4.84
2975 5710 3.000041 CAAGACTACAAGCATGGCGTTA 59.000 45.455 0.00 0.00 0.00 3.18
2976 5711 3.543680 AGACTACAAGCATGGCGTTAT 57.456 42.857 0.00 0.00 0.00 1.89
2977 5712 3.458189 AGACTACAAGCATGGCGTTATC 58.542 45.455 0.00 0.00 0.00 1.75
2978 5713 3.118775 AGACTACAAGCATGGCGTTATCA 60.119 43.478 0.00 0.00 0.00 2.15
2979 5714 3.605634 ACTACAAGCATGGCGTTATCAA 58.394 40.909 0.00 0.00 0.00 2.57
2980 5715 3.623060 ACTACAAGCATGGCGTTATCAAG 59.377 43.478 0.00 0.00 0.00 3.02
2981 5716 1.133025 ACAAGCATGGCGTTATCAAGC 59.867 47.619 0.00 0.00 0.00 4.01
2982 5717 1.402968 CAAGCATGGCGTTATCAAGCT 59.597 47.619 0.00 0.00 40.30 3.74
2983 5718 1.303309 AGCATGGCGTTATCAAGCTC 58.697 50.000 0.00 0.00 34.63 4.09
2984 5719 1.016627 GCATGGCGTTATCAAGCTCA 58.983 50.000 0.00 0.00 0.00 4.26
2985 5720 1.003116 GCATGGCGTTATCAAGCTCAG 60.003 52.381 0.00 0.00 0.00 3.35
2986 5721 1.003116 CATGGCGTTATCAAGCTCAGC 60.003 52.381 0.00 0.00 0.00 4.26
2987 5722 0.250234 TGGCGTTATCAAGCTCAGCT 59.750 50.000 0.00 0.00 42.56 4.24
2988 5723 0.933796 GGCGTTATCAAGCTCAGCTC 59.066 55.000 0.00 0.00 38.25 4.09
2989 5724 1.645034 GCGTTATCAAGCTCAGCTCA 58.355 50.000 0.00 0.00 38.25 4.26
2990 5725 2.208431 GCGTTATCAAGCTCAGCTCAT 58.792 47.619 0.00 0.00 38.25 2.90
2991 5726 2.033065 GCGTTATCAAGCTCAGCTCATG 60.033 50.000 0.00 0.00 38.25 3.07
2992 5727 2.543012 CGTTATCAAGCTCAGCTCATGG 59.457 50.000 0.00 0.00 38.25 3.66
2993 5728 3.739209 CGTTATCAAGCTCAGCTCATGGA 60.739 47.826 0.00 0.00 38.25 3.41
2994 5729 2.623878 ATCAAGCTCAGCTCATGGAG 57.376 50.000 0.00 0.00 38.25 3.86
2995 5730 1.565067 TCAAGCTCAGCTCATGGAGA 58.435 50.000 0.00 0.00 38.25 3.71
2996 5731 2.117051 TCAAGCTCAGCTCATGGAGAT 58.883 47.619 0.00 0.00 38.25 2.75
2997 5732 2.158943 TCAAGCTCAGCTCATGGAGATG 60.159 50.000 0.00 5.19 45.99 2.90
2998 5733 0.759959 AGCTCAGCTCATGGAGATGG 59.240 55.000 11.12 4.18 44.89 3.51
2999 5734 0.885596 GCTCAGCTCATGGAGATGGC 60.886 60.000 11.12 9.61 44.89 4.40
3000 5735 0.759959 CTCAGCTCATGGAGATGGCT 59.240 55.000 11.12 0.00 44.89 4.75
3001 5736 0.757512 TCAGCTCATGGAGATGGCTC 59.242 55.000 11.12 0.00 44.89 4.70
3002 5737 0.600518 CAGCTCATGGAGATGGCTCG 60.601 60.000 3.67 0.00 41.66 5.03
3003 5738 1.047596 AGCTCATGGAGATGGCTCGT 61.048 55.000 0.00 0.00 42.25 4.18
3004 5739 0.599728 GCTCATGGAGATGGCTCGTC 60.600 60.000 0.00 0.00 42.25 4.20
3005 5740 0.318529 CTCATGGAGATGGCTCGTCG 60.319 60.000 0.00 0.00 42.25 5.12
3006 5741 0.751643 TCATGGAGATGGCTCGTCGA 60.752 55.000 0.00 0.00 42.25 4.20
3007 5742 0.596083 CATGGAGATGGCTCGTCGAC 60.596 60.000 5.18 5.18 42.25 4.20
3008 5743 2.024871 GGAGATGGCTCGTCGACG 59.975 66.667 31.30 31.30 42.25 5.12
3009 5744 2.024871 GAGATGGCTCGTCGACGG 59.975 66.667 35.05 25.93 40.29 4.79
3010 5745 3.471244 GAGATGGCTCGTCGACGGG 62.471 68.421 35.05 33.98 44.00 5.28
3011 5746 3.515286 GATGGCTCGTCGACGGGA 61.515 66.667 40.08 21.88 43.86 5.14
3014 5749 2.821366 GGCTCGTCGACGGGACTA 60.821 66.667 40.08 18.66 46.36 2.59
3015 5750 2.185494 GGCTCGTCGACGGGACTAT 61.185 63.158 40.08 0.00 46.36 2.12
3016 5751 1.009900 GCTCGTCGACGGGACTATG 60.010 63.158 40.08 19.35 43.86 2.23
3017 5752 1.009900 CTCGTCGACGGGACTATGC 60.010 63.158 33.64 0.00 43.86 3.14
3018 5753 1.437772 CTCGTCGACGGGACTATGCT 61.438 60.000 33.64 0.00 43.86 3.79
3019 5754 1.009900 CGTCGACGGGACTATGCTC 60.010 63.158 29.70 0.00 43.79 4.26
3020 5755 1.712018 CGTCGACGGGACTATGCTCA 61.712 60.000 29.70 0.00 43.79 4.26
3021 5756 0.454600 GTCGACGGGACTATGCTCAA 59.545 55.000 0.00 0.00 42.62 3.02
3022 5757 0.738975 TCGACGGGACTATGCTCAAG 59.261 55.000 0.00 0.00 0.00 3.02
3023 5758 0.872021 CGACGGGACTATGCTCAAGC 60.872 60.000 0.00 0.00 42.50 4.01
3035 5770 2.373540 GCTCAAGCAATGCAAATCCA 57.626 45.000 8.35 0.00 41.59 3.41
3036 5771 1.997606 GCTCAAGCAATGCAAATCCAC 59.002 47.619 8.35 0.00 41.59 4.02
3037 5772 2.610976 GCTCAAGCAATGCAAATCCACA 60.611 45.455 8.35 0.00 41.59 4.17
3038 5773 3.250744 CTCAAGCAATGCAAATCCACAG 58.749 45.455 8.35 0.00 0.00 3.66
3039 5774 2.892215 TCAAGCAATGCAAATCCACAGA 59.108 40.909 8.35 0.00 0.00 3.41
3040 5775 3.512329 TCAAGCAATGCAAATCCACAGAT 59.488 39.130 8.35 0.00 0.00 2.90
3041 5776 3.520290 AGCAATGCAAATCCACAGATG 57.480 42.857 8.35 0.00 31.29 2.90
3042 5777 3.093814 AGCAATGCAAATCCACAGATGA 58.906 40.909 8.35 0.00 31.29 2.92
3043 5778 3.130516 AGCAATGCAAATCCACAGATGAG 59.869 43.478 8.35 0.00 31.29 2.90
3044 5779 3.119245 GCAATGCAAATCCACAGATGAGT 60.119 43.478 0.00 0.00 31.29 3.41
3045 5780 4.421058 CAATGCAAATCCACAGATGAGTG 58.579 43.478 0.00 0.00 39.21 3.51
3046 5781 1.814394 TGCAAATCCACAGATGAGTGC 59.186 47.619 0.00 0.00 38.18 4.40
3047 5782 2.089980 GCAAATCCACAGATGAGTGCT 58.910 47.619 0.00 0.00 38.18 4.40
3048 5783 2.097142 GCAAATCCACAGATGAGTGCTC 59.903 50.000 0.00 0.00 38.18 4.26
3049 5784 2.306341 AATCCACAGATGAGTGCTCG 57.694 50.000 0.00 0.00 38.18 5.03
3050 5785 0.463204 ATCCACAGATGAGTGCTCGG 59.537 55.000 0.00 0.00 38.18 4.63
3051 5786 1.153489 CCACAGATGAGTGCTCGGG 60.153 63.158 0.00 0.00 38.18 5.14
3052 5787 1.593787 CACAGATGAGTGCTCGGGT 59.406 57.895 0.00 0.00 32.04 5.28
3053 5788 0.738762 CACAGATGAGTGCTCGGGTG 60.739 60.000 0.00 0.00 32.04 4.61
3054 5789 0.900182 ACAGATGAGTGCTCGGGTGA 60.900 55.000 0.00 0.00 0.00 4.02
3055 5790 0.463204 CAGATGAGTGCTCGGGTGAT 59.537 55.000 0.00 0.00 0.00 3.06
3056 5791 0.749649 AGATGAGTGCTCGGGTGATC 59.250 55.000 0.00 0.00 0.00 2.92
3057 5792 0.596083 GATGAGTGCTCGGGTGATCG 60.596 60.000 0.00 0.00 0.00 3.69
3058 5793 1.037579 ATGAGTGCTCGGGTGATCGA 61.038 55.000 0.00 0.00 37.60 3.59
3059 5794 1.248101 TGAGTGCTCGGGTGATCGAA 61.248 55.000 0.00 0.00 38.77 3.71
3060 5795 0.526524 GAGTGCTCGGGTGATCGAAG 60.527 60.000 0.00 0.00 38.77 3.79
3061 5796 2.167861 GTGCTCGGGTGATCGAAGC 61.168 63.158 0.00 0.00 38.77 3.86
3062 5797 2.184322 GCTCGGGTGATCGAAGCA 59.816 61.111 0.00 0.00 38.77 3.91
3063 5798 1.880340 GCTCGGGTGATCGAAGCAG 60.880 63.158 0.00 0.00 38.77 4.24
3064 5799 1.809869 CTCGGGTGATCGAAGCAGA 59.190 57.895 0.00 0.00 38.77 4.26
3065 5800 0.248825 CTCGGGTGATCGAAGCAGAG 60.249 60.000 2.79 2.79 38.77 3.35
3066 5801 1.227089 CGGGTGATCGAAGCAGAGG 60.227 63.158 0.00 0.00 0.00 3.69
3067 5802 1.667154 CGGGTGATCGAAGCAGAGGA 61.667 60.000 0.00 0.00 0.00 3.71
3068 5803 0.537188 GGGTGATCGAAGCAGAGGAA 59.463 55.000 0.00 0.00 0.00 3.36
3069 5804 1.472376 GGGTGATCGAAGCAGAGGAAG 60.472 57.143 0.00 0.00 0.00 3.46
3070 5805 1.478510 GGTGATCGAAGCAGAGGAAGA 59.521 52.381 0.00 0.00 0.00 2.87
3071 5806 2.093973 GGTGATCGAAGCAGAGGAAGAA 60.094 50.000 0.00 0.00 0.00 2.52
3072 5807 3.589988 GTGATCGAAGCAGAGGAAGAAA 58.410 45.455 0.00 0.00 0.00 2.52
3073 5808 4.187694 GTGATCGAAGCAGAGGAAGAAAT 58.812 43.478 0.00 0.00 0.00 2.17
3074 5809 4.269844 GTGATCGAAGCAGAGGAAGAAATC 59.730 45.833 0.00 0.00 0.00 2.17
3075 5810 3.961480 TCGAAGCAGAGGAAGAAATCA 57.039 42.857 0.00 0.00 0.00 2.57
3076 5811 4.478206 TCGAAGCAGAGGAAGAAATCAT 57.522 40.909 0.00 0.00 0.00 2.45
3077 5812 4.437239 TCGAAGCAGAGGAAGAAATCATC 58.563 43.478 0.00 0.00 39.15 2.92
3078 5813 4.081476 TCGAAGCAGAGGAAGAAATCATCA 60.081 41.667 0.00 0.00 41.31 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
140 142 3.385115 ACCTCCGGGTCTAGAATGATTT 58.615 45.455 0.00 0.00 43.38 2.17
354 373 3.485378 ACAACAAAACATGAAACATCGCG 59.515 39.130 0.00 0.00 0.00 5.87
506 558 6.204688 TGATGTGTTTGTAGTGTTTGGAGATC 59.795 38.462 0.00 0.00 0.00 2.75
514 713 5.869579 AGATCCTGATGTGTTTGTAGTGTT 58.130 37.500 0.00 0.00 0.00 3.32
543 2532 4.647424 TTTCAATCCAGAACAGCGTTTT 57.353 36.364 0.00 0.00 0.00 2.43
706 3018 5.634020 GCATAGCTAACGAATTCCGAGTATT 59.366 40.000 0.00 0.00 41.76 1.89
716 3031 2.810274 CAGGCATGCATAGCTAACGAAT 59.190 45.455 21.36 0.00 0.00 3.34
718 3033 1.541015 CCAGGCATGCATAGCTAACGA 60.541 52.381 21.36 0.00 0.00 3.85
719 3034 0.870393 CCAGGCATGCATAGCTAACG 59.130 55.000 21.36 0.00 0.00 3.18
720 3035 1.242076 CCCAGGCATGCATAGCTAAC 58.758 55.000 21.36 0.00 0.00 2.34
765 3149 3.865745 ACTAGCAATTTGAATCCGAGTCG 59.134 43.478 5.29 5.29 0.00 4.18
766 3150 5.447818 CCAACTAGCAATTTGAATCCGAGTC 60.448 44.000 0.00 0.00 0.00 3.36
767 3151 4.396166 CCAACTAGCAATTTGAATCCGAGT 59.604 41.667 0.00 0.00 0.00 4.18
768 3152 4.635765 TCCAACTAGCAATTTGAATCCGAG 59.364 41.667 0.00 0.00 0.00 4.63
769 3153 4.584874 TCCAACTAGCAATTTGAATCCGA 58.415 39.130 0.00 0.00 0.00 4.55
770 3154 4.963276 TCCAACTAGCAATTTGAATCCG 57.037 40.909 0.00 0.00 0.00 4.18
771 3155 6.924111 TCTTTCCAACTAGCAATTTGAATCC 58.076 36.000 0.00 0.00 0.00 3.01
772 3156 8.992835 AATCTTTCCAACTAGCAATTTGAATC 57.007 30.769 0.00 0.00 0.00 2.52
773 3157 8.587608 TGAATCTTTCCAACTAGCAATTTGAAT 58.412 29.630 0.00 0.00 0.00 2.57
774 3158 7.950512 TGAATCTTTCCAACTAGCAATTTGAA 58.049 30.769 0.00 0.00 0.00 2.69
775 3159 7.523293 TGAATCTTTCCAACTAGCAATTTGA 57.477 32.000 0.00 0.00 0.00 2.69
776 3160 8.248945 AGATGAATCTTTCCAACTAGCAATTTG 58.751 33.333 0.00 0.00 31.97 2.32
777 3161 8.358582 AGATGAATCTTTCCAACTAGCAATTT 57.641 30.769 0.00 0.00 31.97 1.82
778 3162 7.951347 AGATGAATCTTTCCAACTAGCAATT 57.049 32.000 0.00 0.00 31.97 2.32
779 3163 7.951347 AAGATGAATCTTTCCAACTAGCAAT 57.049 32.000 0.00 0.00 44.28 3.56
781 3165 9.547753 GTATAAGATGAATCTTTCCAACTAGCA 57.452 33.333 10.66 0.00 44.28 3.49
782 3166 9.771534 AGTATAAGATGAATCTTTCCAACTAGC 57.228 33.333 10.66 0.00 44.28 3.42
784 3168 9.967346 CGAGTATAAGATGAATCTTTCCAACTA 57.033 33.333 10.66 0.00 44.28 2.24
785 3169 7.928706 CCGAGTATAAGATGAATCTTTCCAACT 59.071 37.037 10.66 9.08 44.28 3.16
786 3170 7.926555 TCCGAGTATAAGATGAATCTTTCCAAC 59.073 37.037 10.66 5.20 44.28 3.77
787 3171 8.018537 TCCGAGTATAAGATGAATCTTTCCAA 57.981 34.615 10.66 0.00 44.28 3.53
788 3172 7.597288 TCCGAGTATAAGATGAATCTTTCCA 57.403 36.000 10.66 0.00 44.28 3.53
789 3173 9.495572 AATTCCGAGTATAAGATGAATCTTTCC 57.504 33.333 10.66 0.77 44.28 3.13
797 3181 9.914131 CACTAATGAATTCCGAGTATAAGATGA 57.086 33.333 2.27 0.00 0.00 2.92
798 3182 8.651588 GCACTAATGAATTCCGAGTATAAGATG 58.348 37.037 2.27 0.00 0.00 2.90
799 3183 7.542477 CGCACTAATGAATTCCGAGTATAAGAT 59.458 37.037 2.27 0.00 0.00 2.40
800 3184 6.861572 CGCACTAATGAATTCCGAGTATAAGA 59.138 38.462 2.27 0.00 0.00 2.10
801 3185 6.400091 GCGCACTAATGAATTCCGAGTATAAG 60.400 42.308 0.30 0.00 0.00 1.73
802 3186 5.404366 GCGCACTAATGAATTCCGAGTATAA 59.596 40.000 0.30 0.00 0.00 0.98
803 3187 4.921515 GCGCACTAATGAATTCCGAGTATA 59.078 41.667 0.30 0.00 0.00 1.47
804 3188 3.741344 GCGCACTAATGAATTCCGAGTAT 59.259 43.478 0.30 0.00 0.00 2.12
805 3189 3.120792 GCGCACTAATGAATTCCGAGTA 58.879 45.455 0.30 0.00 0.00 2.59
806 3190 1.933853 GCGCACTAATGAATTCCGAGT 59.066 47.619 0.30 0.70 0.00 4.18
807 3191 1.071239 CGCGCACTAATGAATTCCGAG 60.071 52.381 8.75 0.05 0.00 4.63
808 3192 0.927537 CGCGCACTAATGAATTCCGA 59.072 50.000 8.75 0.00 0.00 4.55
809 3193 0.650512 ACGCGCACTAATGAATTCCG 59.349 50.000 5.73 0.00 0.00 4.30
810 3194 2.825086 AACGCGCACTAATGAATTCC 57.175 45.000 5.73 0.00 0.00 3.01
811 3195 4.202358 GCTAAAACGCGCACTAATGAATTC 59.798 41.667 5.73 0.00 0.00 2.17
812 3196 4.095610 GCTAAAACGCGCACTAATGAATT 58.904 39.130 5.73 0.00 0.00 2.17
813 3197 3.486875 GGCTAAAACGCGCACTAATGAAT 60.487 43.478 5.73 0.00 0.00 2.57
814 3198 2.159626 GGCTAAAACGCGCACTAATGAA 60.160 45.455 5.73 0.00 0.00 2.57
815 3199 1.395608 GGCTAAAACGCGCACTAATGA 59.604 47.619 5.73 0.00 0.00 2.57
816 3200 1.129624 TGGCTAAAACGCGCACTAATG 59.870 47.619 5.73 0.00 0.00 1.90
817 3201 1.444836 TGGCTAAAACGCGCACTAAT 58.555 45.000 5.73 0.00 0.00 1.73
818 3202 1.129624 CATGGCTAAAACGCGCACTAA 59.870 47.619 5.73 0.00 0.00 2.24
819 3203 0.724549 CATGGCTAAAACGCGCACTA 59.275 50.000 5.73 0.00 0.00 2.74
922 3370 1.400494 CAAGAAAATAAGGACGCGGGG 59.600 52.381 12.47 0.00 0.00 5.73
1303 3870 0.455633 CTTGCTGCCGTTCTTGATGC 60.456 55.000 0.00 0.00 0.00 3.91
1520 4117 2.889503 GCTCTGCTGCGCTCGATT 60.890 61.111 9.73 0.00 0.00 3.34
1562 4159 4.634703 TGCACCGTGTCCGCCATT 62.635 61.111 0.00 0.00 0.00 3.16
1946 4680 4.022416 AGACTCTGCTGACACTCTTGTAAG 60.022 45.833 0.00 0.00 37.28 2.34
1999 4733 4.503007 GTGTAACTATGCCGTACACATCTG 59.497 45.833 8.02 0.96 40.31 2.90
2463 5198 9.865321 CAGACCAACAATTTTCTCATTCATATT 57.135 29.630 0.00 0.00 0.00 1.28
2536 5271 6.116680 CTTTAAGAAGCCACAGAAGCATAG 57.883 41.667 0.00 0.00 0.00 2.23
2604 5339 7.114095 TGTGAAATCAGAGATGAATCCATTGA 58.886 34.615 0.00 0.00 32.09 2.57
2828 5563 3.025176 GGCTACGCTCGATGTCGC 61.025 66.667 6.05 6.05 39.60 5.19
2829 5564 2.722548 CGGCTACGCTCGATGTCG 60.723 66.667 0.00 0.00 41.45 4.35
2830 5565 1.369448 CTCGGCTACGCTCGATGTC 60.369 63.158 0.00 0.00 40.69 3.06
2831 5566 2.716244 CTCGGCTACGCTCGATGT 59.284 61.111 0.00 0.00 40.69 3.06
2832 5567 2.727647 GCTCGGCTACGCTCGATG 60.728 66.667 0.00 0.00 40.69 3.84
2833 5568 4.315122 CGCTCGGCTACGCTCGAT 62.315 66.667 0.00 0.00 40.69 3.59
2836 5571 4.615834 CTCCGCTCGGCTACGCTC 62.616 72.222 2.96 0.00 40.69 5.03
2850 5585 4.176752 ATCTTTCGCCCGGCCTCC 62.177 66.667 3.10 0.00 0.00 4.30
2851 5586 2.897350 CATCTTTCGCCCGGCCTC 60.897 66.667 3.10 0.00 0.00 4.70
2852 5587 4.489771 CCATCTTTCGCCCGGCCT 62.490 66.667 3.10 0.00 0.00 5.19
2853 5588 4.483243 TCCATCTTTCGCCCGGCC 62.483 66.667 3.10 0.00 0.00 6.13
2854 5589 2.897350 CTCCATCTTTCGCCCGGC 60.897 66.667 0.00 0.00 0.00 6.13
2855 5590 2.897350 GCTCCATCTTTCGCCCGG 60.897 66.667 0.00 0.00 0.00 5.73
2856 5591 2.125147 TGCTCCATCTTTCGCCCG 60.125 61.111 0.00 0.00 0.00 6.13
2857 5592 0.179034 ATCTGCTCCATCTTTCGCCC 60.179 55.000 0.00 0.00 0.00 6.13
2858 5593 0.942962 CATCTGCTCCATCTTTCGCC 59.057 55.000 0.00 0.00 0.00 5.54
2859 5594 0.942962 CCATCTGCTCCATCTTTCGC 59.057 55.000 0.00 0.00 0.00 4.70
2860 5595 0.942962 GCCATCTGCTCCATCTTTCG 59.057 55.000 0.00 0.00 36.87 3.46
2861 5596 0.942962 CGCCATCTGCTCCATCTTTC 59.057 55.000 0.00 0.00 38.05 2.62
2862 5597 0.465097 CCGCCATCTGCTCCATCTTT 60.465 55.000 0.00 0.00 38.05 2.52
2863 5598 1.147824 CCGCCATCTGCTCCATCTT 59.852 57.895 0.00 0.00 38.05 2.40
2864 5599 1.763655 TCCGCCATCTGCTCCATCT 60.764 57.895 0.00 0.00 38.05 2.90
2865 5600 1.596477 GTCCGCCATCTGCTCCATC 60.596 63.158 0.00 0.00 38.05 3.51
2866 5601 2.369633 TGTCCGCCATCTGCTCCAT 61.370 57.895 0.00 0.00 38.05 3.41
2867 5602 3.002583 TGTCCGCCATCTGCTCCA 61.003 61.111 0.00 0.00 38.05 3.86
2868 5603 2.512515 GTGTCCGCCATCTGCTCC 60.513 66.667 0.00 0.00 38.05 4.70
2869 5604 2.512515 GGTGTCCGCCATCTGCTC 60.513 66.667 0.00 0.00 38.05 4.26
2870 5605 4.457496 CGGTGTCCGCCATCTGCT 62.457 66.667 0.00 0.00 41.17 4.24
2880 5615 1.647084 GTTGAACTGCACGGTGTCC 59.353 57.895 10.24 0.00 0.00 4.02
2881 5616 1.149361 TCGTTGAACTGCACGGTGTC 61.149 55.000 10.24 2.94 0.00 3.67
2882 5617 1.153529 TCGTTGAACTGCACGGTGT 60.154 52.632 10.24 0.00 0.00 4.16
2883 5618 1.275657 GTCGTTGAACTGCACGGTG 59.724 57.895 3.15 3.15 0.00 4.94
2884 5619 1.885850 GGTCGTTGAACTGCACGGT 60.886 57.895 0.00 0.00 0.00 4.83
2885 5620 2.604174 GGGTCGTTGAACTGCACGG 61.604 63.158 0.00 0.00 0.00 4.94
2886 5621 2.604174 GGGGTCGTTGAACTGCACG 61.604 63.158 0.00 0.00 0.00 5.34
2887 5622 1.227853 AGGGGTCGTTGAACTGCAC 60.228 57.895 0.00 0.00 0.00 4.57
2888 5623 1.227823 CAGGGGTCGTTGAACTGCA 60.228 57.895 0.00 0.00 0.00 4.41
2889 5624 1.966451 CCAGGGGTCGTTGAACTGC 60.966 63.158 0.00 0.00 0.00 4.40
2890 5625 0.324943 ATCCAGGGGTCGTTGAACTG 59.675 55.000 0.00 0.00 0.00 3.16
2891 5626 0.613777 GATCCAGGGGTCGTTGAACT 59.386 55.000 0.00 0.00 0.00 3.01
2892 5627 0.392595 GGATCCAGGGGTCGTTGAAC 60.393 60.000 6.95 0.00 0.00 3.18
2893 5628 0.838554 TGGATCCAGGGGTCGTTGAA 60.839 55.000 11.44 0.00 0.00 2.69
2894 5629 0.620410 ATGGATCCAGGGGTCGTTGA 60.620 55.000 21.33 0.00 0.00 3.18
2895 5630 0.179045 GATGGATCCAGGGGTCGTTG 60.179 60.000 21.33 0.00 0.00 4.10
2896 5631 0.620410 TGATGGATCCAGGGGTCGTT 60.620 55.000 21.33 0.00 0.00 3.85
2897 5632 1.002921 TGATGGATCCAGGGGTCGT 59.997 57.895 21.33 0.15 0.00 4.34
2898 5633 1.050988 AGTGATGGATCCAGGGGTCG 61.051 60.000 21.33 0.00 0.00 4.79
2899 5634 0.761802 GAGTGATGGATCCAGGGGTC 59.238 60.000 21.33 13.13 0.00 4.46
2900 5635 0.695803 GGAGTGATGGATCCAGGGGT 60.696 60.000 21.33 2.32 35.54 4.95
2901 5636 1.762522 CGGAGTGATGGATCCAGGGG 61.763 65.000 21.33 1.19 35.14 4.79
2902 5637 0.760567 TCGGAGTGATGGATCCAGGG 60.761 60.000 21.33 4.07 35.14 4.45
2903 5638 0.390860 GTCGGAGTGATGGATCCAGG 59.609 60.000 21.33 3.38 35.14 4.45
2904 5639 1.407936 AGTCGGAGTGATGGATCCAG 58.592 55.000 21.33 4.50 35.14 3.86
2905 5640 1.482182 CAAGTCGGAGTGATGGATCCA 59.518 52.381 18.88 18.88 35.14 3.41
2906 5641 1.202580 CCAAGTCGGAGTGATGGATCC 60.203 57.143 4.20 4.20 36.56 3.36
2907 5642 1.808133 GCCAAGTCGGAGTGATGGATC 60.808 57.143 7.58 0.00 36.56 3.36
2908 5643 0.179000 GCCAAGTCGGAGTGATGGAT 59.821 55.000 7.58 0.00 36.56 3.41
2909 5644 1.596934 GCCAAGTCGGAGTGATGGA 59.403 57.895 7.58 0.00 36.56 3.41
2910 5645 1.450312 GGCCAAGTCGGAGTGATGG 60.450 63.158 0.00 0.04 36.56 3.51
2911 5646 0.321564 TTGGCCAAGTCGGAGTGATG 60.322 55.000 16.05 0.00 36.56 3.07
2912 5647 0.036010 CTTGGCCAAGTCGGAGTGAT 60.036 55.000 33.46 0.00 36.56 3.06
2913 5648 1.371183 CTTGGCCAAGTCGGAGTGA 59.629 57.895 33.46 1.43 36.56 3.41
2914 5649 3.972227 CTTGGCCAAGTCGGAGTG 58.028 61.111 33.46 9.94 36.56 3.51
2922 5657 1.001641 CTCAGGGGACTTGGCCAAG 60.002 63.158 38.30 38.30 40.21 3.61
2923 5658 2.538141 CCTCAGGGGACTTGGCCAA 61.538 63.158 19.25 19.25 40.21 4.52
2924 5659 2.935481 CCTCAGGGGACTTGGCCA 60.935 66.667 0.00 0.00 40.21 5.36
2925 5660 2.610859 TCCTCAGGGGACTTGGCC 60.611 66.667 0.00 0.00 40.21 5.36
2926 5661 2.993853 CTCCTCAGGGGACTTGGC 59.006 66.667 0.00 0.00 40.21 4.52
2927 5662 1.614824 AGCTCCTCAGGGGACTTGG 60.615 63.158 0.00 0.00 40.21 3.61
2928 5663 1.601171 CAGCTCCTCAGGGGACTTG 59.399 63.158 0.00 0.00 40.21 3.16
2929 5664 2.297129 GCAGCTCCTCAGGGGACTT 61.297 63.158 0.00 0.00 40.21 3.01
2930 5665 2.686835 GCAGCTCCTCAGGGGACT 60.687 66.667 0.00 0.00 46.44 3.85
2931 5666 2.686835 AGCAGCTCCTCAGGGGAC 60.687 66.667 0.00 0.00 39.58 4.46
2932 5667 2.364842 GAGCAGCTCCTCAGGGGA 60.365 66.667 11.84 0.00 42.77 4.81
2933 5668 3.478274 GGAGCAGCTCCTCAGGGG 61.478 72.222 31.54 0.00 46.41 4.79
2946 5681 1.466558 GCTTGTAGTCTTGCTTGGAGC 59.533 52.381 0.00 0.00 42.82 4.70
2947 5682 2.771089 TGCTTGTAGTCTTGCTTGGAG 58.229 47.619 0.00 0.00 0.00 3.86
2948 5683 2.928801 TGCTTGTAGTCTTGCTTGGA 57.071 45.000 0.00 0.00 0.00 3.53
2949 5684 2.163010 CCATGCTTGTAGTCTTGCTTGG 59.837 50.000 0.00 0.00 41.79 3.61
2950 5685 2.415090 GCCATGCTTGTAGTCTTGCTTG 60.415 50.000 0.00 0.00 0.00 4.01
2951 5686 1.815003 GCCATGCTTGTAGTCTTGCTT 59.185 47.619 0.00 0.00 0.00 3.91
2952 5687 1.457346 GCCATGCTTGTAGTCTTGCT 58.543 50.000 0.00 0.00 0.00 3.91
2953 5688 0.097674 CGCCATGCTTGTAGTCTTGC 59.902 55.000 0.00 0.00 0.00 4.01
2954 5689 1.442769 ACGCCATGCTTGTAGTCTTG 58.557 50.000 0.00 0.00 0.00 3.02
2955 5690 2.185004 AACGCCATGCTTGTAGTCTT 57.815 45.000 0.00 0.00 0.00 3.01
2956 5691 3.118775 TGATAACGCCATGCTTGTAGTCT 60.119 43.478 0.00 0.00 0.00 3.24
2957 5692 3.194861 TGATAACGCCATGCTTGTAGTC 58.805 45.455 0.00 0.00 0.00 2.59
2958 5693 3.260475 TGATAACGCCATGCTTGTAGT 57.740 42.857 0.00 0.00 0.00 2.73
2959 5694 3.546815 GCTTGATAACGCCATGCTTGTAG 60.547 47.826 0.00 0.00 33.53 2.74
2960 5695 2.354510 GCTTGATAACGCCATGCTTGTA 59.645 45.455 0.00 0.00 33.53 2.41
2961 5696 1.133025 GCTTGATAACGCCATGCTTGT 59.867 47.619 0.00 0.00 33.53 3.16
2962 5697 1.402968 AGCTTGATAACGCCATGCTTG 59.597 47.619 0.00 0.00 40.62 4.01
2963 5698 1.672881 GAGCTTGATAACGCCATGCTT 59.327 47.619 0.00 0.00 42.59 3.91
2964 5699 1.303309 GAGCTTGATAACGCCATGCT 58.697 50.000 0.00 0.00 44.36 3.79
2965 5700 1.003116 CTGAGCTTGATAACGCCATGC 60.003 52.381 0.00 0.00 35.65 4.06
2966 5701 1.003116 GCTGAGCTTGATAACGCCATG 60.003 52.381 0.00 0.00 0.00 3.66
2967 5702 1.134280 AGCTGAGCTTGATAACGCCAT 60.134 47.619 0.00 0.00 33.89 4.40
2968 5703 0.250234 AGCTGAGCTTGATAACGCCA 59.750 50.000 0.00 0.00 33.89 5.69
2969 5704 0.933796 GAGCTGAGCTTGATAACGCC 59.066 55.000 9.00 0.00 39.88 5.68
2970 5705 1.645034 TGAGCTGAGCTTGATAACGC 58.355 50.000 9.00 0.00 39.88 4.84
2971 5706 2.543012 CCATGAGCTGAGCTTGATAACG 59.457 50.000 9.00 0.00 39.88 3.18
2972 5707 3.801698 TCCATGAGCTGAGCTTGATAAC 58.198 45.455 9.00 0.00 39.88 1.89
2973 5708 3.708121 TCTCCATGAGCTGAGCTTGATAA 59.292 43.478 9.00 0.00 39.88 1.75
2974 5709 3.303049 TCTCCATGAGCTGAGCTTGATA 58.697 45.455 9.00 0.00 39.88 2.15
2975 5710 2.117051 TCTCCATGAGCTGAGCTTGAT 58.883 47.619 9.00 0.69 39.88 2.57
2976 5711 1.565067 TCTCCATGAGCTGAGCTTGA 58.435 50.000 9.00 0.00 39.88 3.02
2977 5712 2.214347 CATCTCCATGAGCTGAGCTTG 58.786 52.381 9.00 3.39 39.88 4.01
2978 5713 1.141254 CCATCTCCATGAGCTGAGCTT 59.859 52.381 9.00 0.00 39.88 3.74
2979 5714 0.759959 CCATCTCCATGAGCTGAGCT 59.240 55.000 6.69 6.69 43.88 4.09
2980 5715 0.885596 GCCATCTCCATGAGCTGAGC 60.886 60.000 0.00 0.00 28.47 4.26
2981 5716 0.759959 AGCCATCTCCATGAGCTGAG 59.240 55.000 0.00 0.00 36.04 3.35
2982 5717 0.757512 GAGCCATCTCCATGAGCTGA 59.242 55.000 0.00 0.00 36.94 4.26
2983 5718 0.600518 CGAGCCATCTCCATGAGCTG 60.601 60.000 0.00 0.00 36.94 4.24
2984 5719 1.047596 ACGAGCCATCTCCATGAGCT 61.048 55.000 0.00 0.00 38.51 4.09
2985 5720 0.599728 GACGAGCCATCTCCATGAGC 60.600 60.000 0.00 0.00 35.94 4.26
2986 5721 0.318529 CGACGAGCCATCTCCATGAG 60.319 60.000 0.00 0.00 35.94 2.90
2987 5722 0.751643 TCGACGAGCCATCTCCATGA 60.752 55.000 0.00 0.00 35.94 3.07
2988 5723 0.596083 GTCGACGAGCCATCTCCATG 60.596 60.000 0.00 0.00 35.94 3.66
2989 5724 1.736586 GTCGACGAGCCATCTCCAT 59.263 57.895 0.00 0.00 35.94 3.41
2990 5725 2.761195 CGTCGACGAGCCATCTCCA 61.761 63.158 33.35 0.00 43.02 3.86
2991 5726 2.024871 CGTCGACGAGCCATCTCC 59.975 66.667 33.35 0.00 43.02 3.71
2992 5727 2.024871 CCGTCGACGAGCCATCTC 59.975 66.667 37.65 0.00 43.02 2.75
2993 5728 3.518998 CCCGTCGACGAGCCATCT 61.519 66.667 37.65 0.00 43.02 2.90
2994 5729 3.515286 TCCCGTCGACGAGCCATC 61.515 66.667 37.65 0.00 43.02 3.51
2995 5730 2.881539 TAGTCCCGTCGACGAGCCAT 62.882 60.000 37.65 20.82 46.92 4.40
2996 5731 2.881539 ATAGTCCCGTCGACGAGCCA 62.882 60.000 37.65 18.78 46.92 4.75
2997 5732 2.185494 ATAGTCCCGTCGACGAGCC 61.185 63.158 37.65 23.00 46.92 4.70
2998 5733 1.009900 CATAGTCCCGTCGACGAGC 60.010 63.158 37.65 24.86 46.92 5.03
2999 5734 1.009900 GCATAGTCCCGTCGACGAG 60.010 63.158 37.65 26.69 46.92 4.18
3000 5735 1.434622 GAGCATAGTCCCGTCGACGA 61.435 60.000 37.65 18.99 46.92 4.20
3001 5736 1.009900 GAGCATAGTCCCGTCGACG 60.010 63.158 30.33 30.33 46.92 5.12
3002 5737 0.454600 TTGAGCATAGTCCCGTCGAC 59.545 55.000 5.18 5.18 42.32 4.20
3003 5738 0.738975 CTTGAGCATAGTCCCGTCGA 59.261 55.000 0.00 0.00 0.00 4.20
3004 5739 0.872021 GCTTGAGCATAGTCCCGTCG 60.872 60.000 0.00 0.00 41.59 5.12
3005 5740 2.979130 GCTTGAGCATAGTCCCGTC 58.021 57.895 0.00 0.00 41.59 4.79
3016 5751 1.997606 GTGGATTTGCATTGCTTGAGC 59.002 47.619 10.49 0.00 42.50 4.26
3017 5752 3.057104 TCTGTGGATTTGCATTGCTTGAG 60.057 43.478 10.49 0.00 0.00 3.02
3018 5753 2.892215 TCTGTGGATTTGCATTGCTTGA 59.108 40.909 10.49 0.00 0.00 3.02
3019 5754 3.306917 TCTGTGGATTTGCATTGCTTG 57.693 42.857 10.49 0.00 0.00 4.01
3020 5755 3.512329 TCATCTGTGGATTTGCATTGCTT 59.488 39.130 10.49 0.00 0.00 3.91
3021 5756 3.093814 TCATCTGTGGATTTGCATTGCT 58.906 40.909 10.49 0.00 0.00 3.91
3022 5757 3.119245 ACTCATCTGTGGATTTGCATTGC 60.119 43.478 0.46 0.46 0.00 3.56
3023 5758 4.421058 CACTCATCTGTGGATTTGCATTG 58.579 43.478 0.00 0.00 34.56 2.82
3024 5759 3.119245 GCACTCATCTGTGGATTTGCATT 60.119 43.478 0.00 0.00 38.31 3.56
3025 5760 2.426024 GCACTCATCTGTGGATTTGCAT 59.574 45.455 0.00 0.00 38.31 3.96
3026 5761 1.814394 GCACTCATCTGTGGATTTGCA 59.186 47.619 0.00 0.00 38.31 4.08
3027 5762 2.089980 AGCACTCATCTGTGGATTTGC 58.910 47.619 0.00 0.00 38.31 3.68
3028 5763 2.350804 CGAGCACTCATCTGTGGATTTG 59.649 50.000 0.00 0.00 38.31 2.32
3029 5764 2.625737 CGAGCACTCATCTGTGGATTT 58.374 47.619 0.00 0.00 38.31 2.17
3030 5765 1.134580 CCGAGCACTCATCTGTGGATT 60.135 52.381 0.00 0.00 38.31 3.01
3031 5766 0.463204 CCGAGCACTCATCTGTGGAT 59.537 55.000 0.00 0.00 38.31 3.41
3032 5767 1.607801 CCCGAGCACTCATCTGTGGA 61.608 60.000 0.00 0.00 38.31 4.02
3033 5768 1.153489 CCCGAGCACTCATCTGTGG 60.153 63.158 0.00 0.00 38.31 4.17
3034 5769 0.738762 CACCCGAGCACTCATCTGTG 60.739 60.000 0.00 0.00 40.62 3.66
3035 5770 0.900182 TCACCCGAGCACTCATCTGT 60.900 55.000 0.00 0.00 0.00 3.41
3036 5771 0.463204 ATCACCCGAGCACTCATCTG 59.537 55.000 0.00 0.00 0.00 2.90
3037 5772 0.749649 GATCACCCGAGCACTCATCT 59.250 55.000 0.00 0.00 0.00 2.90
3038 5773 0.596083 CGATCACCCGAGCACTCATC 60.596 60.000 0.00 0.00 0.00 2.92
3039 5774 1.037579 TCGATCACCCGAGCACTCAT 61.038 55.000 0.00 0.00 34.19 2.90
3040 5775 1.248101 TTCGATCACCCGAGCACTCA 61.248 55.000 0.00 0.00 39.90 3.41
3041 5776 0.526524 CTTCGATCACCCGAGCACTC 60.527 60.000 0.00 0.00 39.90 3.51
3042 5777 1.513158 CTTCGATCACCCGAGCACT 59.487 57.895 0.00 0.00 39.90 4.40
3043 5778 2.167861 GCTTCGATCACCCGAGCAC 61.168 63.158 0.00 0.00 39.90 4.40
3044 5779 2.184322 GCTTCGATCACCCGAGCA 59.816 61.111 0.00 0.00 39.90 4.26
3045 5780 1.880340 CTGCTTCGATCACCCGAGC 60.880 63.158 0.00 0.00 39.90 5.03
3046 5781 0.248825 CTCTGCTTCGATCACCCGAG 60.249 60.000 0.00 0.00 39.90 4.63
3047 5782 1.667154 CCTCTGCTTCGATCACCCGA 61.667 60.000 0.00 0.00 36.70 5.14
3048 5783 1.227089 CCTCTGCTTCGATCACCCG 60.227 63.158 0.00 0.00 0.00 5.28
3049 5784 0.537188 TTCCTCTGCTTCGATCACCC 59.463 55.000 0.00 0.00 0.00 4.61
3050 5785 1.478510 TCTTCCTCTGCTTCGATCACC 59.521 52.381 0.00 0.00 0.00 4.02
3051 5786 2.949451 TCTTCCTCTGCTTCGATCAC 57.051 50.000 0.00 0.00 0.00 3.06
3052 5787 3.961480 TTTCTTCCTCTGCTTCGATCA 57.039 42.857 0.00 0.00 0.00 2.92
3053 5788 4.437239 TGATTTCTTCCTCTGCTTCGATC 58.563 43.478 0.00 0.00 0.00 3.69
3054 5789 4.478206 TGATTTCTTCCTCTGCTTCGAT 57.522 40.909 0.00 0.00 0.00 3.59
3055 5790 3.961480 TGATTTCTTCCTCTGCTTCGA 57.039 42.857 0.00 0.00 0.00 3.71
3056 5791 4.186926 TGATGATTTCTTCCTCTGCTTCG 58.813 43.478 0.00 0.00 0.00 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.