Multiple sequence alignment - TraesCS7B01G334300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G334300 chr7B 100.000 2636 0 0 1 2636 589697093 589694458 0.000000e+00 4868.0
1 TraesCS7B01G334300 chr7B 95.937 1846 38 14 782 2595 589735267 589737107 0.000000e+00 2959.0
2 TraesCS7B01G334300 chr7B 95.267 1817 29 17 808 2595 588878268 588876480 0.000000e+00 2826.0
3 TraesCS7B01G334300 chr7B 96.242 1703 30 16 802 2484 589919917 589921605 0.000000e+00 2760.0
4 TraesCS7B01G334300 chr7B 92.174 1840 45 24 802 2595 588823495 588821709 0.000000e+00 2508.0
5 TraesCS7B01G334300 chr7B 78.303 931 99 46 815 1680 537825684 537824792 3.030000e-139 505.0
6 TraesCS7B01G334300 chr7B 84.806 283 24 10 114 389 589750556 589750826 1.560000e-67 267.0
7 TraesCS7B01G334300 chr7B 84.577 201 14 9 202 394 589739957 589740148 1.610000e-42 183.0
8 TraesCS7B01G334300 chr7B 87.742 155 5 2 498 652 589734950 589735090 4.510000e-38 169.0
9 TraesCS7B01G334300 chr7B 83.957 187 7 10 532 716 588823715 588823550 9.770000e-35 158.0
10 TraesCS7B01G334300 chr7B 88.158 76 4 1 153 228 589739855 589739925 4.670000e-13 86.1
11 TraesCS7B01G334300 chr7B 97.826 46 1 0 2591 2636 589921626 589921671 2.170000e-11 80.5
12 TraesCS7B01G334300 chr7B 97.500 40 0 1 113 151 589923919 589923958 1.690000e-07 67.6
13 TraesCS7B01G334300 chr1B 94.463 1824 42 23 809 2595 133124165 133122364 0.000000e+00 2754.0
14 TraesCS7B01G334300 chr1B 92.715 1661 49 22 967 2595 133111350 133109730 0.000000e+00 2331.0
15 TraesCS7B01G334300 chr1B 92.659 1662 46 26 967 2595 426481939 426480321 0.000000e+00 2324.0
16 TraesCS7B01G334300 chr1B 97.216 898 15 2 1689 2577 426496077 426495181 0.000000e+00 1511.0
17 TraesCS7B01G334300 chr1B 86.921 1208 76 34 581 1732 398961671 398962852 0.000000e+00 1280.0
18 TraesCS7B01G334300 chr1B 88.759 854 49 24 853 1680 426496961 426496129 0.000000e+00 1002.0
19 TraesCS7B01G334300 chr1B 89.754 244 11 4 153 393 398837310 398837078 1.530000e-77 300.0
20 TraesCS7B01G334300 chr1B 94.839 155 4 1 498 652 426482400 426482250 3.390000e-59 239.0
21 TraesCS7B01G334300 chr1B 97.917 96 2 0 498 593 133111757 133111662 1.620000e-37 167.0
22 TraesCS7B01G334300 chr1B 97.826 46 1 0 2591 2636 398900252 398900297 2.170000e-11 80.5
23 TraesCS7B01G334300 chr1B 97.826 46 1 0 2591 2636 398965178 398965223 2.170000e-11 80.5
24 TraesCS7B01G334300 chr1B 95.652 46 2 0 2591 2636 398962673 398962718 1.010000e-09 75.0
25 TraesCS7B01G334300 chr1B 97.619 42 0 1 114 154 398837715 398837674 1.310000e-08 71.3
26 TraesCS7B01G334300 chr1B 97.500 40 0 1 113 151 398966947 398966986 1.690000e-07 67.6
27 TraesCS7B01G334300 chr1B 97.143 35 1 0 641 675 133111673 133111639 2.830000e-05 60.2
28 TraesCS7B01G334300 chr1B 97.143 35 1 0 641 675 426482268 426482234 2.830000e-05 60.2
29 TraesCS7B01G334300 chr1B 94.444 36 2 0 802 837 426482106 426482071 3.670000e-04 56.5
30 TraesCS7B01G334300 chr7A 93.642 1730 62 22 851 2549 627008678 627006966 0.000000e+00 2542.0
31 TraesCS7B01G334300 chr7A 91.840 1826 82 29 802 2595 628385912 628384122 0.000000e+00 2484.0
32 TraesCS7B01G334300 chr7A 84.498 987 74 36 752 1683 626992743 626991781 0.000000e+00 902.0
33 TraesCS7B01G334300 chr7A 85.762 906 60 27 802 1680 627232560 627231697 0.000000e+00 894.0
34 TraesCS7B01G334300 chr7A 83.946 897 82 33 802 1668 169958471 169957607 0.000000e+00 802.0
35 TraesCS7B01G334300 chr7A 78.072 643 88 24 992 1606 580504387 580503770 8.970000e-95 357.0
36 TraesCS7B01G334300 chr7A 84.416 308 17 15 498 800 627045583 627045302 9.300000e-70 274.0
37 TraesCS7B01G334300 chr7A 83.468 248 23 12 155 393 628524058 628524296 5.710000e-52 215.0
38 TraesCS7B01G334300 chr7A 93.243 74 2 2 730 800 627113620 627113547 3.590000e-19 106.0
39 TraesCS7B01G334300 chr7A 95.312 64 3 0 330 393 628483118 628483055 4.640000e-18 102.0
40 TraesCS7B01G334300 chr7A 90.278 72 6 1 48 119 268858725 268858795 2.790000e-15 93.5
41 TraesCS7B01G334300 chr7A 94.915 59 3 0 498 556 627008889 627008831 2.790000e-15 93.5
42 TraesCS7B01G334300 chr7A 93.333 60 4 0 498 557 626992863 626992804 3.610000e-14 89.8
43 TraesCS7B01G334300 chr7A 95.918 49 2 0 153 201 628484406 628484358 2.170000e-11 80.5
44 TraesCS7B01G334300 chr5D 97.923 915 10 2 1689 2595 289420201 289419288 0.000000e+00 1576.0
45 TraesCS7B01G334300 chr5D 97.705 915 12 2 1689 2595 289354394 289353481 0.000000e+00 1565.0
46 TraesCS7B01G334300 chr5D 92.755 842 28 8 870 1680 289421092 289420253 0.000000e+00 1186.0
47 TraesCS7B01G334300 chr5D 91.949 857 29 13 852 1680 289355290 289354446 0.000000e+00 1164.0
48 TraesCS7B01G334300 chr5D 97.228 505 4 3 1689 2185 289726470 289725968 0.000000e+00 846.0
49 TraesCS7B01G334300 chr5D 91.589 535 17 6 870 1376 289727136 289726602 0.000000e+00 713.0
50 TraesCS7B01G334300 chr5D 90.256 195 9 6 163 357 331841574 331841758 2.030000e-61 246.0
51 TraesCS7B01G334300 chr5D 100.000 57 0 0 648 704 289421242 289421186 3.590000e-19 106.0
52 TraesCS7B01G334300 chr5D 100.000 57 0 0 648 704 289727292 289727236 3.590000e-19 106.0
53 TraesCS7B01G334300 chr5D 96.610 59 2 0 498 556 289727369 289727311 6.000000e-17 99.0
54 TraesCS7B01G334300 chr5D 94.915 59 3 0 498 556 289421319 289421261 2.790000e-15 93.5
55 TraesCS7B01G334300 chr5D 95.652 46 2 0 2591 2636 289354571 289354526 1.010000e-09 75.0
56 TraesCS7B01G334300 chr5D 95.652 46 2 0 2591 2636 289420386 289420341 1.010000e-09 75.0
57 TraesCS7B01G334300 chr5D 95.652 46 2 0 2591 2636 331838457 331838502 1.010000e-09 75.0
58 TraesCS7B01G334300 chr5D 100.000 28 0 0 1672 1699 289354420 289354393 5.000000e-03 52.8
59 TraesCS7B01G334300 chr6A 97.049 915 17 3 1689 2595 107265294 107266206 0.000000e+00 1531.0
60 TraesCS7B01G334300 chr6A 88.582 797 45 13 920 1680 107264456 107265242 0.000000e+00 926.0
61 TraesCS7B01G334300 chr6A 95.652 46 2 0 2591 2636 107265117 107265162 1.010000e-09 75.0
62 TraesCS7B01G334300 chr7D 86.296 1204 85 33 448 1606 545650101 545651269 0.000000e+00 1236.0
63 TraesCS7B01G334300 chr7D 89.844 256 6 10 542 792 545267343 545267103 7.080000e-81 311.0
64 TraesCS7B01G334300 chr7D 95.652 46 2 0 2591 2636 545266261 545266216 1.010000e-09 75.0
65 TraesCS7B01G334300 chr2B 88.408 785 45 16 864 1626 135512636 135513396 0.000000e+00 904.0
66 TraesCS7B01G334300 chr2B 86.747 83 4 3 711 792 182133986 182133910 4.670000e-13 86.1
67 TraesCS7B01G334300 chr2D 91.892 74 6 0 44 117 646849112 646849185 1.290000e-18 104.0
68 TraesCS7B01G334300 chr4D 91.781 73 6 0 47 119 456274859 456274787 4.640000e-18 102.0
69 TraesCS7B01G334300 chrUn 92.754 69 5 0 47 115 180873935 180873867 1.670000e-17 100.0
70 TraesCS7B01G334300 chrUn 92.754 69 5 0 47 115 180902752 180902684 1.670000e-17 100.0
71 TraesCS7B01G334300 chrUn 97.561 41 0 1 114 153 326632103 326632143 4.710000e-08 69.4
72 TraesCS7B01G334300 chr6B 91.667 72 6 0 44 115 455490950 455490879 1.670000e-17 100.0
73 TraesCS7B01G334300 chr5A 90.667 75 7 0 44 118 32836498 32836424 1.670000e-17 100.0
74 TraesCS7B01G334300 chr4A 90.667 75 7 0 44 118 604389537 604389463 1.670000e-17 100.0
75 TraesCS7B01G334300 chr4A 97.561 41 0 1 114 153 712630134 712630094 4.710000e-08 69.4
76 TraesCS7B01G334300 chr4A 97.561 41 0 1 114 153 712647161 712647121 4.710000e-08 69.4
77 TraesCS7B01G334300 chr4A 97.561 41 0 1 114 153 712810565 712810525 4.710000e-08 69.4
78 TraesCS7B01G334300 chr2A 92.754 69 5 0 47 115 756068155 756068087 1.670000e-17 100.0
79 TraesCS7B01G334300 chr6D 89.474 76 3 3 153 228 124606802 124606732 1.000000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G334300 chr7B 589694458 589697093 2635 True 4868.000000 4868 100.000000 1 2636 1 chr7B.!!$R3 2635
1 TraesCS7B01G334300 chr7B 588876480 588878268 1788 True 2826.000000 2826 95.267000 808 2595 1 chr7B.!!$R2 1787
2 TraesCS7B01G334300 chr7B 588821709 588823715 2006 True 1333.000000 2508 88.065500 532 2595 2 chr7B.!!$R4 2063
3 TraesCS7B01G334300 chr7B 589919917 589923958 4041 False 969.366667 2760 97.189333 113 2636 3 chr7B.!!$F3 2523
4 TraesCS7B01G334300 chr7B 589734950 589740148 5198 False 849.275000 2959 89.103500 153 2595 4 chr7B.!!$F2 2442
5 TraesCS7B01G334300 chr7B 537824792 537825684 892 True 505.000000 505 78.303000 815 1680 1 chr7B.!!$R1 865
6 TraesCS7B01G334300 chr1B 133122364 133124165 1801 True 2754.000000 2754 94.463000 809 2595 1 chr1B.!!$R1 1786
7 TraesCS7B01G334300 chr1B 426495181 426496961 1780 True 1256.500000 1511 92.987500 853 2577 2 chr1B.!!$R5 1724
8 TraesCS7B01G334300 chr1B 133109730 133111757 2027 True 852.733333 2331 95.925000 498 2595 3 chr1B.!!$R2 2097
9 TraesCS7B01G334300 chr1B 426480321 426482400 2079 True 669.925000 2324 94.771250 498 2595 4 chr1B.!!$R4 2097
10 TraesCS7B01G334300 chr1B 398961671 398966986 5315 False 375.775000 1280 94.474750 113 2636 4 chr1B.!!$F2 2523
11 TraesCS7B01G334300 chr7A 628384122 628385912 1790 True 2484.000000 2484 91.840000 802 2595 1 chr7A.!!$R6 1793
12 TraesCS7B01G334300 chr7A 627006966 627008889 1923 True 1317.750000 2542 94.278500 498 2549 2 chr7A.!!$R8 2051
13 TraesCS7B01G334300 chr7A 627231697 627232560 863 True 894.000000 894 85.762000 802 1680 1 chr7A.!!$R5 878
14 TraesCS7B01G334300 chr7A 169957607 169958471 864 True 802.000000 802 83.946000 802 1668 1 chr7A.!!$R1 866
15 TraesCS7B01G334300 chr7A 626991781 626992863 1082 True 495.900000 902 88.915500 498 1683 2 chr7A.!!$R7 1185
16 TraesCS7B01G334300 chr7A 580503770 580504387 617 True 357.000000 357 78.072000 992 1606 1 chr7A.!!$R2 614
17 TraesCS7B01G334300 chr5D 289353481 289355290 1809 True 714.200000 1565 96.326500 852 2636 4 chr5D.!!$R1 1784
18 TraesCS7B01G334300 chr5D 289419288 289421319 2031 True 607.300000 1576 96.249000 498 2636 5 chr5D.!!$R2 2138
19 TraesCS7B01G334300 chr5D 289725968 289727369 1401 True 441.000000 846 96.356750 498 2185 4 chr5D.!!$R3 1687
20 TraesCS7B01G334300 chr6A 107264456 107266206 1750 False 844.000000 1531 93.761000 920 2636 3 chr6A.!!$F1 1716
21 TraesCS7B01G334300 chr7D 545650101 545651269 1168 False 1236.000000 1236 86.296000 448 1606 1 chr7D.!!$F1 1158
22 TraesCS7B01G334300 chr2B 135512636 135513396 760 False 904.000000 904 88.408000 864 1626 1 chr2B.!!$F1 762

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
637 640 0.034756 TGTGTGTGCGCCATAGAACT 59.965 50.0 4.18 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2388 4299 2.555325 TGCTCTGCAAAATTCAGACCAG 59.445 45.455 0.0 0.0 35.81 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.451908 GGTGTTTCCTATTCATTTATACTGCT 57.548 34.615 0.00 0.00 0.00 4.24
26 27 8.903820 GGTGTTTCCTATTCATTTATACTGCTT 58.096 33.333 0.00 0.00 0.00 3.91
27 28 9.937175 GTGTTTCCTATTCATTTATACTGCTTC 57.063 33.333 0.00 0.00 0.00 3.86
28 29 9.120538 TGTTTCCTATTCATTTATACTGCTTCC 57.879 33.333 0.00 0.00 0.00 3.46
29 30 9.120538 GTTTCCTATTCATTTATACTGCTTCCA 57.879 33.333 0.00 0.00 0.00 3.53
30 31 9.866655 TTTCCTATTCATTTATACTGCTTCCAT 57.133 29.630 0.00 0.00 0.00 3.41
31 32 8.853077 TCCTATTCATTTATACTGCTTCCATG 57.147 34.615 0.00 0.00 0.00 3.66
32 33 7.884877 TCCTATTCATTTATACTGCTTCCATGG 59.115 37.037 4.97 4.97 0.00 3.66
33 34 7.667219 CCTATTCATTTATACTGCTTCCATGGT 59.333 37.037 12.58 0.00 0.00 3.55
34 35 7.902920 ATTCATTTATACTGCTTCCATGGTT 57.097 32.000 12.58 0.00 0.00 3.67
35 36 6.942532 TCATTTATACTGCTTCCATGGTTC 57.057 37.500 12.58 2.70 0.00 3.62
36 37 6.422333 TCATTTATACTGCTTCCATGGTTCA 58.578 36.000 12.58 7.35 0.00 3.18
37 38 7.062322 TCATTTATACTGCTTCCATGGTTCAT 58.938 34.615 12.58 0.00 0.00 2.57
38 39 8.217111 TCATTTATACTGCTTCCATGGTTCATA 58.783 33.333 12.58 0.00 0.00 2.15
39 40 7.801716 TTTATACTGCTTCCATGGTTCATAC 57.198 36.000 12.58 0.00 0.00 2.39
40 41 3.719268 ACTGCTTCCATGGTTCATACA 57.281 42.857 12.58 2.34 0.00 2.29
41 42 4.240881 ACTGCTTCCATGGTTCATACAT 57.759 40.909 12.58 0.00 0.00 2.29
42 43 3.949754 ACTGCTTCCATGGTTCATACATG 59.050 43.478 12.58 0.00 44.03 3.21
43 44 4.201657 CTGCTTCCATGGTTCATACATGA 58.798 43.478 12.58 0.00 46.60 3.07
44 45 4.598022 TGCTTCCATGGTTCATACATGAA 58.402 39.130 12.58 0.45 46.60 2.57
45 46 4.641541 TGCTTCCATGGTTCATACATGAAG 59.358 41.667 12.58 4.92 46.44 3.02
46 47 4.883585 GCTTCCATGGTTCATACATGAAGA 59.116 41.667 12.58 0.00 46.44 2.87
47 48 5.357878 GCTTCCATGGTTCATACATGAAGAA 59.642 40.000 12.58 4.66 46.44 2.52
48 49 6.127647 GCTTCCATGGTTCATACATGAAGAAA 60.128 38.462 12.58 0.00 46.44 2.52
49 50 7.417116 GCTTCCATGGTTCATACATGAAGAAAT 60.417 37.037 12.58 0.00 46.44 2.17
50 51 9.123902 CTTCCATGGTTCATACATGAAGAAATA 57.876 33.333 12.58 0.00 46.44 1.40
51 52 9.645128 TTCCATGGTTCATACATGAAGAAATAT 57.355 29.630 12.58 0.00 46.44 1.28
111 112 9.807921 ACATTCTTATTTTTCTTTACAGAGGGA 57.192 29.630 0.00 0.00 0.00 4.20
115 116 9.939802 TCTTATTTTTCTTTACAGAGGGAGTAC 57.060 33.333 0.00 0.00 0.00 2.73
116 117 9.720769 CTTATTTTTCTTTACAGAGGGAGTACA 57.279 33.333 0.00 0.00 0.00 2.90
119 120 9.892130 ATTTTTCTTTACAGAGGGAGTACATAG 57.108 33.333 0.00 0.00 0.00 2.23
120 121 8.660295 TTTTCTTTACAGAGGGAGTACATAGA 57.340 34.615 0.00 0.00 0.00 1.98
121 122 8.660295 TTTCTTTACAGAGGGAGTACATAGAA 57.340 34.615 0.00 0.00 0.00 2.10
122 123 8.840200 TTCTTTACAGAGGGAGTACATAGAAT 57.160 34.615 0.00 0.00 0.00 2.40
123 124 8.840200 TCTTTACAGAGGGAGTACATAGAATT 57.160 34.615 0.00 0.00 0.00 2.17
124 125 9.931698 TCTTTACAGAGGGAGTACATAGAATTA 57.068 33.333 0.00 0.00 0.00 1.40
126 127 9.710818 TTTACAGAGGGAGTACATAGAATTAGT 57.289 33.333 0.00 0.00 0.00 2.24
127 128 7.589958 ACAGAGGGAGTACATAGAATTAGTG 57.410 40.000 0.00 0.00 0.00 2.74
128 129 6.041069 ACAGAGGGAGTACATAGAATTAGTGC 59.959 42.308 0.00 0.00 0.00 4.40
129 130 6.040955 CAGAGGGAGTACATAGAATTAGTGCA 59.959 42.308 0.00 0.00 0.00 4.57
130 131 6.266558 AGAGGGAGTACATAGAATTAGTGCAG 59.733 42.308 0.00 0.00 0.00 4.41
131 132 5.305644 AGGGAGTACATAGAATTAGTGCAGG 59.694 44.000 0.00 0.00 0.00 4.85
132 133 5.304614 GGGAGTACATAGAATTAGTGCAGGA 59.695 44.000 0.00 0.00 0.00 3.86
133 134 6.183360 GGGAGTACATAGAATTAGTGCAGGAA 60.183 42.308 0.00 0.00 0.00 3.36
134 135 6.702282 GGAGTACATAGAATTAGTGCAGGAAC 59.298 42.308 0.00 0.00 0.00 3.62
135 136 7.182817 AGTACATAGAATTAGTGCAGGAACA 57.817 36.000 0.00 0.00 0.00 3.18
136 137 7.796054 AGTACATAGAATTAGTGCAGGAACAT 58.204 34.615 0.00 0.00 0.00 2.71
137 138 8.924303 AGTACATAGAATTAGTGCAGGAACATA 58.076 33.333 0.00 0.00 0.00 2.29
138 139 8.979574 GTACATAGAATTAGTGCAGGAACATAC 58.020 37.037 0.00 0.00 0.00 2.39
139 140 7.564793 ACATAGAATTAGTGCAGGAACATACA 58.435 34.615 0.00 0.00 0.00 2.29
140 141 8.046708 ACATAGAATTAGTGCAGGAACATACAA 58.953 33.333 0.00 0.00 0.00 2.41
141 142 8.892723 CATAGAATTAGTGCAGGAACATACAAA 58.107 33.333 0.00 0.00 0.00 2.83
142 143 7.145932 AGAATTAGTGCAGGAACATACAAAC 57.854 36.000 0.00 0.00 0.00 2.93
143 144 6.714810 AGAATTAGTGCAGGAACATACAAACA 59.285 34.615 0.00 0.00 0.00 2.83
144 145 5.940192 TTAGTGCAGGAACATACAAACAG 57.060 39.130 0.00 0.00 0.00 3.16
145 146 3.149196 AGTGCAGGAACATACAAACAGG 58.851 45.455 0.00 0.00 0.00 4.00
146 147 2.884639 GTGCAGGAACATACAAACAGGT 59.115 45.455 0.00 0.00 0.00 4.00
147 148 4.069304 GTGCAGGAACATACAAACAGGTA 58.931 43.478 0.00 0.00 0.00 3.08
148 149 4.517453 GTGCAGGAACATACAAACAGGTAA 59.483 41.667 0.00 0.00 0.00 2.85
149 150 4.759693 TGCAGGAACATACAAACAGGTAAG 59.240 41.667 0.00 0.00 0.00 2.34
150 151 4.379499 GCAGGAACATACAAACAGGTAAGC 60.379 45.833 0.00 0.00 0.00 3.09
151 152 4.759693 CAGGAACATACAAACAGGTAAGCA 59.240 41.667 0.00 0.00 0.00 3.91
152 153 4.760204 AGGAACATACAAACAGGTAAGCAC 59.240 41.667 0.00 0.00 0.00 4.40
153 154 4.760204 GGAACATACAAACAGGTAAGCACT 59.240 41.667 0.00 0.00 0.00 4.40
154 155 5.935789 GGAACATACAAACAGGTAAGCACTA 59.064 40.000 0.00 0.00 0.00 2.74
155 156 6.128363 GGAACATACAAACAGGTAAGCACTAC 60.128 42.308 0.00 0.00 0.00 2.73
156 157 6.110411 ACATACAAACAGGTAAGCACTACT 57.890 37.500 0.00 0.00 0.00 2.57
157 158 5.932303 ACATACAAACAGGTAAGCACTACTG 59.068 40.000 0.00 0.00 0.00 2.74
158 159 3.139077 ACAAACAGGTAAGCACTACTGC 58.861 45.455 0.00 0.00 44.63 4.40
159 160 3.138304 CAAACAGGTAAGCACTACTGCA 58.862 45.455 0.00 0.00 46.97 4.41
160 161 2.457366 ACAGGTAAGCACTACTGCAC 57.543 50.000 0.00 0.00 46.97 4.57
161 162 1.336887 ACAGGTAAGCACTACTGCACG 60.337 52.381 0.00 0.00 46.97 5.34
162 163 0.389948 AGGTAAGCACTACTGCACGC 60.390 55.000 0.00 0.00 46.97 5.34
163 164 0.389948 GGTAAGCACTACTGCACGCT 60.390 55.000 0.00 0.00 46.97 5.07
164 165 0.716108 GTAAGCACTACTGCACGCTG 59.284 55.000 0.00 0.00 46.97 5.18
165 166 0.601057 TAAGCACTACTGCACGCTGA 59.399 50.000 2.69 0.00 46.97 4.26
166 167 0.249868 AAGCACTACTGCACGCTGAA 60.250 50.000 2.69 0.00 46.97 3.02
167 168 0.668706 AGCACTACTGCACGCTGAAG 60.669 55.000 2.69 0.00 46.97 3.02
168 169 1.784062 CACTACTGCACGCTGAAGC 59.216 57.895 2.69 0.00 37.78 3.86
169 170 1.374758 ACTACTGCACGCTGAAGCC 60.375 57.895 2.69 0.00 37.91 4.35
170 171 1.374631 CTACTGCACGCTGAAGCCA 60.375 57.895 2.69 0.00 37.91 4.75
171 172 0.950555 CTACTGCACGCTGAAGCCAA 60.951 55.000 2.69 0.00 37.91 4.52
172 173 1.227999 TACTGCACGCTGAAGCCAAC 61.228 55.000 2.69 0.00 37.91 3.77
173 174 3.584250 CTGCACGCTGAAGCCAACG 62.584 63.158 0.00 0.00 37.83 4.10
178 179 2.401195 GCTGAAGCCAACGCGATC 59.599 61.111 15.93 1.36 41.18 3.69
179 180 2.697425 CTGAAGCCAACGCGATCG 59.303 61.111 15.93 11.69 41.18 3.69
180 181 1.805539 CTGAAGCCAACGCGATCGA 60.806 57.895 21.57 0.00 41.18 3.59
181 182 1.148157 CTGAAGCCAACGCGATCGAT 61.148 55.000 21.57 0.00 41.18 3.59
182 183 0.739462 TGAAGCCAACGCGATCGATT 60.739 50.000 21.57 9.39 41.18 3.34
183 184 0.315382 GAAGCCAACGCGATCGATTG 60.315 55.000 21.57 20.55 41.18 2.67
184 185 1.705337 AAGCCAACGCGATCGATTGG 61.705 55.000 31.85 31.85 43.33 3.16
185 186 3.014036 CCAACGCGATCGATTGGG 58.986 61.111 30.00 24.11 40.18 4.12
186 187 2.534019 CCAACGCGATCGATTGGGG 61.534 63.158 30.00 19.47 40.18 4.96
187 188 2.203015 AACGCGATCGATTGGGGG 60.203 61.111 27.76 17.39 39.41 5.40
188 189 4.910585 ACGCGATCGATTGGGGGC 62.911 66.667 27.76 13.34 39.41 5.80
189 190 4.908687 CGCGATCGATTGGGGGCA 62.909 66.667 21.57 0.00 38.10 5.36
190 191 2.974698 GCGATCGATTGGGGGCAG 60.975 66.667 21.57 0.00 0.00 4.85
191 192 2.821685 CGATCGATTGGGGGCAGA 59.178 61.111 10.26 0.00 0.00 4.26
192 193 1.146041 CGATCGATTGGGGGCAGAA 59.854 57.895 10.26 0.00 0.00 3.02
193 194 0.463654 CGATCGATTGGGGGCAGAAA 60.464 55.000 10.26 0.00 0.00 2.52
194 195 1.762708 GATCGATTGGGGGCAGAAAA 58.237 50.000 0.00 0.00 0.00 2.29
195 196 1.405463 GATCGATTGGGGGCAGAAAAC 59.595 52.381 0.00 0.00 0.00 2.43
196 197 0.404040 TCGATTGGGGGCAGAAAACT 59.596 50.000 0.00 0.00 0.00 2.66
197 198 1.631388 TCGATTGGGGGCAGAAAACTA 59.369 47.619 0.00 0.00 0.00 2.24
198 199 1.743394 CGATTGGGGGCAGAAAACTAC 59.257 52.381 0.00 0.00 0.00 2.73
199 200 2.802719 GATTGGGGGCAGAAAACTACA 58.197 47.619 0.00 0.00 0.00 2.74
200 201 2.286365 TTGGGGGCAGAAAACTACAG 57.714 50.000 0.00 0.00 0.00 2.74
201 202 1.145571 TGGGGGCAGAAAACTACAGT 58.854 50.000 0.00 0.00 0.00 3.55
202 203 2.340731 TGGGGGCAGAAAACTACAGTA 58.659 47.619 0.00 0.00 0.00 2.74
203 204 2.039348 TGGGGGCAGAAAACTACAGTAC 59.961 50.000 0.00 0.00 0.00 2.73
204 205 2.039348 GGGGGCAGAAAACTACAGTACA 59.961 50.000 0.00 0.00 0.00 2.90
205 206 3.335579 GGGGCAGAAAACTACAGTACAG 58.664 50.000 0.00 0.00 0.00 2.74
206 207 2.742589 GGGCAGAAAACTACAGTACAGC 59.257 50.000 0.00 0.00 0.00 4.40
207 208 2.412089 GGCAGAAAACTACAGTACAGCG 59.588 50.000 0.00 0.00 0.00 5.18
208 209 3.314553 GCAGAAAACTACAGTACAGCGA 58.685 45.455 0.00 0.00 0.00 4.93
209 210 3.121445 GCAGAAAACTACAGTACAGCGAC 59.879 47.826 0.00 0.00 0.00 5.19
210 211 4.295870 CAGAAAACTACAGTACAGCGACA 58.704 43.478 0.00 0.00 0.00 4.35
211 212 4.383052 CAGAAAACTACAGTACAGCGACAG 59.617 45.833 0.00 0.00 0.00 3.51
212 213 4.277672 AGAAAACTACAGTACAGCGACAGA 59.722 41.667 0.00 0.00 0.00 3.41
213 214 4.579454 AAACTACAGTACAGCGACAGAA 57.421 40.909 0.00 0.00 0.00 3.02
214 215 4.785511 AACTACAGTACAGCGACAGAAT 57.214 40.909 0.00 0.00 0.00 2.40
215 216 4.098055 ACTACAGTACAGCGACAGAATG 57.902 45.455 0.00 0.00 46.00 2.67
216 217 2.370281 ACAGTACAGCGACAGAATGG 57.630 50.000 0.00 0.00 43.62 3.16
217 218 1.066858 ACAGTACAGCGACAGAATGGG 60.067 52.381 0.00 0.00 43.62 4.00
218 219 1.204704 CAGTACAGCGACAGAATGGGA 59.795 52.381 0.00 0.00 43.62 4.37
219 220 1.899814 AGTACAGCGACAGAATGGGAA 59.100 47.619 0.00 0.00 43.62 3.97
220 221 2.501723 AGTACAGCGACAGAATGGGAAT 59.498 45.455 0.00 0.00 43.62 3.01
221 222 1.742761 ACAGCGACAGAATGGGAATG 58.257 50.000 0.00 0.00 43.62 2.67
222 223 1.019673 CAGCGACAGAATGGGAATGG 58.980 55.000 0.00 0.00 43.62 3.16
223 224 0.107017 AGCGACAGAATGGGAATGGG 60.107 55.000 0.00 0.00 43.62 4.00
224 225 1.103398 GCGACAGAATGGGAATGGGG 61.103 60.000 0.00 0.00 43.62 4.96
225 226 0.466189 CGACAGAATGGGAATGGGGG 60.466 60.000 0.00 0.00 43.62 5.40
226 227 0.926293 GACAGAATGGGAATGGGGGA 59.074 55.000 0.00 0.00 43.62 4.81
227 228 1.287739 GACAGAATGGGAATGGGGGAA 59.712 52.381 0.00 0.00 43.62 3.97
228 229 1.939511 ACAGAATGGGAATGGGGGAAT 59.060 47.619 0.00 0.00 43.62 3.01
229 230 2.318822 ACAGAATGGGAATGGGGGAATT 59.681 45.455 0.00 0.00 43.62 2.17
230 231 3.246461 ACAGAATGGGAATGGGGGAATTT 60.246 43.478 0.00 0.00 43.62 1.82
231 232 3.781965 CAGAATGGGAATGGGGGAATTTT 59.218 43.478 0.00 0.00 0.00 1.82
232 233 4.040047 AGAATGGGAATGGGGGAATTTTC 58.960 43.478 0.00 0.00 0.00 2.29
233 234 3.505497 ATGGGAATGGGGGAATTTTCA 57.495 42.857 0.00 0.00 0.00 2.69
234 235 2.545810 TGGGAATGGGGGAATTTTCAC 58.454 47.619 0.00 0.00 0.00 3.18
235 236 2.158097 TGGGAATGGGGGAATTTTCACA 60.158 45.455 0.00 0.00 30.30 3.58
236 237 2.909662 GGGAATGGGGGAATTTTCACAA 59.090 45.455 0.00 0.00 30.30 3.33
237 238 3.329225 GGGAATGGGGGAATTTTCACAAA 59.671 43.478 0.00 0.00 30.30 2.83
238 239 4.565444 GGGAATGGGGGAATTTTCACAAAG 60.565 45.833 0.00 0.00 30.30 2.77
239 240 3.701205 ATGGGGGAATTTTCACAAAGC 57.299 42.857 0.00 0.00 30.30 3.51
240 241 1.342819 TGGGGGAATTTTCACAAAGCG 59.657 47.619 0.00 0.00 30.30 4.68
241 242 1.428448 GGGGAATTTTCACAAAGCGC 58.572 50.000 0.00 0.00 30.30 5.92
242 243 1.270041 GGGGAATTTTCACAAAGCGCA 60.270 47.619 11.47 0.00 30.30 6.09
243 244 1.792367 GGGAATTTTCACAAAGCGCAC 59.208 47.619 11.47 0.00 0.00 5.34
244 245 2.545742 GGGAATTTTCACAAAGCGCACT 60.546 45.455 11.47 0.00 0.00 4.40
245 246 3.305064 GGGAATTTTCACAAAGCGCACTA 60.305 43.478 11.47 0.00 0.00 2.74
246 247 3.914364 GGAATTTTCACAAAGCGCACTAG 59.086 43.478 11.47 0.00 0.00 2.57
247 248 2.399396 TTTTCACAAAGCGCACTAGC 57.601 45.000 11.47 0.00 37.42 3.42
248 249 1.304254 TTTCACAAAGCGCACTAGCA 58.696 45.000 11.47 0.00 42.27 3.49
249 250 0.586319 TTCACAAAGCGCACTAGCAC 59.414 50.000 11.47 0.00 42.27 4.40
250 251 0.531753 TCACAAAGCGCACTAGCACA 60.532 50.000 11.47 0.00 42.27 4.57
251 252 0.110509 CACAAAGCGCACTAGCACAG 60.111 55.000 11.47 0.00 42.27 3.66
252 253 0.249868 ACAAAGCGCACTAGCACAGA 60.250 50.000 11.47 0.00 42.27 3.41
253 254 0.441533 CAAAGCGCACTAGCACAGAG 59.558 55.000 11.47 0.00 42.27 3.35
254 255 1.294659 AAAGCGCACTAGCACAGAGC 61.295 55.000 11.47 0.00 42.27 4.09
293 294 2.613691 TCGAGTTCGAGGGTAAAATGC 58.386 47.619 0.00 0.00 44.22 3.56
294 295 2.232941 TCGAGTTCGAGGGTAAAATGCT 59.767 45.455 0.00 0.00 44.22 3.79
295 296 2.348666 CGAGTTCGAGGGTAAAATGCTG 59.651 50.000 0.00 0.00 43.02 4.41
296 297 2.084546 AGTTCGAGGGTAAAATGCTGC 58.915 47.619 0.00 0.00 0.00 5.25
297 298 1.810151 GTTCGAGGGTAAAATGCTGCA 59.190 47.619 4.13 4.13 0.00 4.41
298 299 2.192664 TCGAGGGTAAAATGCTGCAA 57.807 45.000 6.36 0.00 0.00 4.08
299 300 2.722094 TCGAGGGTAAAATGCTGCAAT 58.278 42.857 6.36 0.00 0.00 3.56
300 301 3.088532 TCGAGGGTAAAATGCTGCAATT 58.911 40.909 6.36 0.47 0.00 2.32
301 302 3.509575 TCGAGGGTAAAATGCTGCAATTT 59.490 39.130 18.53 18.53 0.00 1.82
302 303 3.859386 CGAGGGTAAAATGCTGCAATTTC 59.141 43.478 18.11 10.44 0.00 2.17
303 304 4.183865 GAGGGTAAAATGCTGCAATTTCC 58.816 43.478 18.11 17.17 0.00 3.13
304 305 3.582208 AGGGTAAAATGCTGCAATTTCCA 59.418 39.130 18.11 0.47 0.00 3.53
305 306 4.225717 AGGGTAAAATGCTGCAATTTCCAT 59.774 37.500 18.11 13.74 0.00 3.41
306 307 4.571984 GGGTAAAATGCTGCAATTTCCATC 59.428 41.667 18.11 3.62 0.00 3.51
307 308 4.571984 GGTAAAATGCTGCAATTTCCATCC 59.428 41.667 18.11 12.74 0.00 3.51
308 309 4.563140 AAAATGCTGCAATTTCCATCCT 57.437 36.364 6.36 0.00 0.00 3.24
309 310 5.680594 AAAATGCTGCAATTTCCATCCTA 57.319 34.783 6.36 0.00 0.00 2.94
310 311 5.881923 AAATGCTGCAATTTCCATCCTAT 57.118 34.783 6.36 0.00 0.00 2.57
311 312 5.464030 AATGCTGCAATTTCCATCCTATC 57.536 39.130 6.36 0.00 0.00 2.08
312 313 3.900971 TGCTGCAATTTCCATCCTATCA 58.099 40.909 0.00 0.00 0.00 2.15
313 314 3.633525 TGCTGCAATTTCCATCCTATCAC 59.366 43.478 0.00 0.00 0.00 3.06
314 315 3.887716 GCTGCAATTTCCATCCTATCACT 59.112 43.478 0.00 0.00 0.00 3.41
315 316 4.261489 GCTGCAATTTCCATCCTATCACTG 60.261 45.833 0.00 0.00 0.00 3.66
316 317 5.114764 TGCAATTTCCATCCTATCACTGA 57.885 39.130 0.00 0.00 0.00 3.41
317 318 5.698104 TGCAATTTCCATCCTATCACTGAT 58.302 37.500 0.00 0.00 0.00 2.90
318 319 5.533528 TGCAATTTCCATCCTATCACTGATG 59.466 40.000 1.42 0.00 38.45 3.07
319 320 5.533903 GCAATTTCCATCCTATCACTGATGT 59.466 40.000 1.42 0.00 37.30 3.06
320 321 6.712095 GCAATTTCCATCCTATCACTGATGTA 59.288 38.462 1.42 0.00 37.30 2.29
321 322 7.308229 GCAATTTCCATCCTATCACTGATGTAC 60.308 40.741 1.42 0.00 37.30 2.90
322 323 6.806668 TTTCCATCCTATCACTGATGTACA 57.193 37.500 0.00 0.00 37.30 2.90
323 324 7.379059 TTTCCATCCTATCACTGATGTACAT 57.621 36.000 8.43 8.43 37.30 2.29
324 325 6.596309 TCCATCCTATCACTGATGTACATC 57.404 41.667 25.95 25.95 37.30 3.06
325 326 5.481824 TCCATCCTATCACTGATGTACATCC 59.518 44.000 28.64 14.09 37.30 3.51
326 327 5.246883 CCATCCTATCACTGATGTACATCCA 59.753 44.000 28.64 17.33 37.30 3.41
327 328 6.239686 CCATCCTATCACTGATGTACATCCAA 60.240 42.308 28.64 13.43 37.30 3.53
328 329 7.392418 CATCCTATCACTGATGTACATCCAAT 58.608 38.462 28.64 18.98 37.02 3.16
329 330 6.997655 TCCTATCACTGATGTACATCCAATC 58.002 40.000 28.64 9.67 37.02 2.67
330 331 6.554605 TCCTATCACTGATGTACATCCAATCA 59.445 38.462 28.64 13.61 37.02 2.57
331 332 6.648310 CCTATCACTGATGTACATCCAATCAC 59.352 42.308 28.64 7.37 37.02 3.06
332 333 5.682234 TCACTGATGTACATCCAATCACT 57.318 39.130 28.64 2.17 37.02 3.41
333 334 5.422145 TCACTGATGTACATCCAATCACTG 58.578 41.667 28.64 13.05 37.02 3.66
334 335 5.187576 TCACTGATGTACATCCAATCACTGA 59.812 40.000 28.64 14.80 37.02 3.41
335 336 5.876460 CACTGATGTACATCCAATCACTGAA 59.124 40.000 28.64 8.80 37.02 3.02
336 337 5.877012 ACTGATGTACATCCAATCACTGAAC 59.123 40.000 28.64 4.64 37.02 3.18
337 338 5.803552 TGATGTACATCCAATCACTGAACA 58.196 37.500 28.64 7.10 37.02 3.18
338 339 5.643348 TGATGTACATCCAATCACTGAACAC 59.357 40.000 28.64 3.62 37.02 3.32
339 340 5.227569 TGTACATCCAATCACTGAACACT 57.772 39.130 0.00 0.00 0.00 3.55
340 341 4.996758 TGTACATCCAATCACTGAACACTG 59.003 41.667 0.00 0.00 0.00 3.66
341 342 4.356405 ACATCCAATCACTGAACACTGA 57.644 40.909 0.00 0.00 0.00 3.41
342 343 4.717877 ACATCCAATCACTGAACACTGAA 58.282 39.130 0.00 0.00 0.00 3.02
343 344 4.516698 ACATCCAATCACTGAACACTGAAC 59.483 41.667 0.00 0.00 0.00 3.18
344 345 3.130633 TCCAATCACTGAACACTGAACG 58.869 45.455 0.00 0.00 0.00 3.95
345 346 3.130633 CCAATCACTGAACACTGAACGA 58.869 45.455 0.00 0.00 0.00 3.85
346 347 3.059597 CCAATCACTGAACACTGAACGAC 60.060 47.826 0.00 0.00 0.00 4.34
347 348 2.951457 TCACTGAACACTGAACGACA 57.049 45.000 0.00 0.00 0.00 4.35
355 356 3.456798 CTGAACGACAGCAGCGAG 58.543 61.111 0.00 0.00 39.86 5.03
356 357 1.081175 CTGAACGACAGCAGCGAGA 60.081 57.895 0.00 0.00 39.86 4.04
357 358 0.457509 CTGAACGACAGCAGCGAGAT 60.458 55.000 0.00 0.00 39.86 2.75
358 359 0.733909 TGAACGACAGCAGCGAGATG 60.734 55.000 0.00 0.00 40.19 2.90
359 360 2.018582 GAACGACAGCAGCGAGATGC 62.019 60.000 5.05 5.05 46.88 3.91
368 369 2.939022 GCGAGATGCGGCCATTAC 59.061 61.111 2.24 0.00 41.29 1.89
369 370 1.887242 GCGAGATGCGGCCATTACA 60.887 57.895 2.24 0.00 41.29 2.41
370 371 1.436195 GCGAGATGCGGCCATTACAA 61.436 55.000 2.24 0.00 41.29 2.41
371 372 1.229428 CGAGATGCGGCCATTACAAT 58.771 50.000 2.24 0.00 36.03 2.71
372 373 1.069703 CGAGATGCGGCCATTACAATG 60.070 52.381 2.24 0.00 36.03 2.82
373 374 2.221169 GAGATGCGGCCATTACAATGA 58.779 47.619 2.24 0.00 38.70 2.57
374 375 2.618241 GAGATGCGGCCATTACAATGAA 59.382 45.455 2.24 0.00 38.70 2.57
375 376 2.620115 AGATGCGGCCATTACAATGAAG 59.380 45.455 2.24 0.00 38.70 3.02
376 377 2.121291 TGCGGCCATTACAATGAAGA 57.879 45.000 2.24 0.00 38.70 2.87
377 378 1.742831 TGCGGCCATTACAATGAAGAC 59.257 47.619 2.24 0.00 38.70 3.01
378 379 1.742831 GCGGCCATTACAATGAAGACA 59.257 47.619 2.24 0.00 38.70 3.41
379 380 2.163412 GCGGCCATTACAATGAAGACAA 59.837 45.455 2.24 0.00 38.70 3.18
380 381 3.181487 GCGGCCATTACAATGAAGACAAT 60.181 43.478 2.24 0.00 38.70 2.71
381 382 4.353737 CGGCCATTACAATGAAGACAATG 58.646 43.478 2.24 0.00 38.70 2.82
382 383 4.096231 CGGCCATTACAATGAAGACAATGA 59.904 41.667 2.24 0.00 38.70 2.57
383 384 5.392919 CGGCCATTACAATGAAGACAATGAA 60.393 40.000 2.24 0.00 38.70 2.57
384 385 5.807011 GGCCATTACAATGAAGACAATGAAC 59.193 40.000 0.00 0.00 38.70 3.18
385 386 6.389091 GCCATTACAATGAAGACAATGAACA 58.611 36.000 3.48 0.00 38.70 3.18
386 387 6.308766 GCCATTACAATGAAGACAATGAACAC 59.691 38.462 3.48 0.00 38.70 3.32
387 388 7.596494 CCATTACAATGAAGACAATGAACACT 58.404 34.615 3.48 0.00 38.70 3.55
388 389 7.539710 CCATTACAATGAAGACAATGAACACTG 59.460 37.037 3.48 0.00 38.70 3.66
389 390 7.800155 TTACAATGAAGACAATGAACACTGA 57.200 32.000 0.00 0.00 32.00 3.41
390 391 6.698008 ACAATGAAGACAATGAACACTGAA 57.302 33.333 0.00 0.00 32.00 3.02
391 392 6.498304 ACAATGAAGACAATGAACACTGAAC 58.502 36.000 0.00 0.00 32.00 3.18
392 393 6.095300 ACAATGAAGACAATGAACACTGAACA 59.905 34.615 0.00 0.00 32.00 3.18
393 394 5.739752 TGAAGACAATGAACACTGAACAG 57.260 39.130 0.00 0.00 0.00 3.16
394 395 4.576053 TGAAGACAATGAACACTGAACAGG 59.424 41.667 6.76 0.00 0.00 4.00
395 396 3.480470 AGACAATGAACACTGAACAGGG 58.520 45.455 2.28 2.28 37.98 4.45
396 397 1.956477 ACAATGAACACTGAACAGGGC 59.044 47.619 3.83 0.00 34.48 5.19
397 398 1.069022 CAATGAACACTGAACAGGGCG 60.069 52.381 3.83 0.00 34.48 6.13
398 399 1.237285 ATGAACACTGAACAGGGCGC 61.237 55.000 0.00 0.00 34.48 6.53
399 400 2.954753 GAACACTGAACAGGGCGCG 61.955 63.158 0.00 0.00 34.48 6.86
400 401 4.988598 ACACTGAACAGGGCGCGG 62.989 66.667 8.83 0.00 34.48 6.46
425 426 3.589139 GGGGGAGGAGGTGTGTTT 58.411 61.111 0.00 0.00 0.00 2.83
426 427 1.379146 GGGGGAGGAGGTGTGTTTC 59.621 63.158 0.00 0.00 0.00 2.78
427 428 1.379146 GGGGAGGAGGTGTGTTTCC 59.621 63.158 0.00 0.00 0.00 3.13
428 429 1.134438 GGGGAGGAGGTGTGTTTCCT 61.134 60.000 0.00 0.00 46.35 3.36
435 436 2.262423 AGGTGTGTTTCCTCAAGAGC 57.738 50.000 0.00 0.00 0.00 4.09
436 437 0.868406 GGTGTGTTTCCTCAAGAGCG 59.132 55.000 0.00 0.00 0.00 5.03
437 438 1.540363 GGTGTGTTTCCTCAAGAGCGA 60.540 52.381 0.00 0.00 0.00 4.93
438 439 1.795286 GTGTGTTTCCTCAAGAGCGAG 59.205 52.381 0.00 0.00 0.00 5.03
443 444 3.592070 CCTCAAGAGCGAGGTCGA 58.408 61.111 2.94 0.00 46.48 4.20
444 445 1.137825 CCTCAAGAGCGAGGTCGAC 59.862 63.158 7.13 7.13 46.48 4.20
445 446 1.137825 CTCAAGAGCGAGGTCGACC 59.862 63.158 27.67 27.67 43.02 4.79
620 623 2.356135 GTCCTCTTTGTGTGTGTGTGT 58.644 47.619 0.00 0.00 0.00 3.72
621 624 2.095853 GTCCTCTTTGTGTGTGTGTGTG 59.904 50.000 0.00 0.00 0.00 3.82
634 637 0.948623 GTGTGTGTGTGCGCCATAGA 60.949 55.000 4.18 0.00 0.00 1.98
635 638 0.250081 TGTGTGTGTGCGCCATAGAA 60.250 50.000 4.18 0.00 0.00 2.10
637 640 0.034756 TGTGTGTGCGCCATAGAACT 59.965 50.000 4.18 0.00 0.00 3.01
638 641 0.721718 GTGTGTGCGCCATAGAACTC 59.278 55.000 4.18 0.00 0.00 3.01
716 719 0.168128 AAGCCATTAGTGCGCGTTTC 59.832 50.000 8.43 0.00 0.00 2.78
727 730 3.861113 AGTGCGCGTTTCGATTTCTTATA 59.139 39.130 8.43 0.00 41.67 0.98
750 753 6.710597 ACTACTCGGATTCATTAGTGCTAA 57.289 37.500 0.00 0.00 0.00 3.09
843 957 1.005867 CAAATTGCTGCCGCCACTT 60.006 52.632 0.00 0.00 34.43 3.16
844 958 1.010419 CAAATTGCTGCCGCCACTTC 61.010 55.000 0.00 0.00 34.43 3.01
845 959 1.181098 AAATTGCTGCCGCCACTTCT 61.181 50.000 0.00 0.00 34.43 2.85
846 960 1.181098 AATTGCTGCCGCCACTTCTT 61.181 50.000 0.00 0.00 34.43 2.52
847 961 0.322456 ATTGCTGCCGCCACTTCTTA 60.322 50.000 0.00 0.00 34.43 2.10
848 962 1.234615 TTGCTGCCGCCACTTCTTAC 61.235 55.000 0.00 0.00 34.43 2.34
1137 1341 2.116125 AAGAAGCCAAAGCGCCCT 59.884 55.556 2.29 0.00 46.67 5.19
1226 1452 0.593128 AACATCAAGAACGGCAGCAC 59.407 50.000 0.00 0.00 0.00 4.40
1807 3718 5.717178 TCTCTAGGTTCTGCACTTAATCACT 59.283 40.000 0.00 0.00 0.00 3.41
2276 4187 4.237724 CAGTTTCTGACGAGTAGCATTGA 58.762 43.478 0.00 0.00 32.44 2.57
2388 4299 9.760077 AATTTTGGATATGAATGAGAGAATTGC 57.240 29.630 0.00 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.451908 AGCAGTATAAATGAATAGGAAACACC 57.548 34.615 0.00 0.00 39.35 4.16
5 6 9.288576 CATGGAAGCAGTATAAATGAATAGGAA 57.711 33.333 0.00 0.00 0.00 3.36
6 7 7.884877 CCATGGAAGCAGTATAAATGAATAGGA 59.115 37.037 5.56 0.00 0.00 2.94
7 8 7.667219 ACCATGGAAGCAGTATAAATGAATAGG 59.333 37.037 21.47 0.00 0.00 2.57
8 9 8.627208 ACCATGGAAGCAGTATAAATGAATAG 57.373 34.615 21.47 0.00 0.00 1.73
9 10 8.995027 AACCATGGAAGCAGTATAAATGAATA 57.005 30.769 21.47 0.00 0.00 1.75
10 11 7.560991 TGAACCATGGAAGCAGTATAAATGAAT 59.439 33.333 21.47 0.00 0.00 2.57
11 12 6.889177 TGAACCATGGAAGCAGTATAAATGAA 59.111 34.615 21.47 0.00 0.00 2.57
12 13 6.422333 TGAACCATGGAAGCAGTATAAATGA 58.578 36.000 21.47 0.00 0.00 2.57
13 14 6.698008 TGAACCATGGAAGCAGTATAAATG 57.302 37.500 21.47 0.00 0.00 2.32
14 15 7.998383 TGTATGAACCATGGAAGCAGTATAAAT 59.002 33.333 21.47 0.00 0.00 1.40
15 16 7.342581 TGTATGAACCATGGAAGCAGTATAAA 58.657 34.615 21.47 0.00 0.00 1.40
16 17 6.894682 TGTATGAACCATGGAAGCAGTATAA 58.105 36.000 21.47 0.00 0.00 0.98
17 18 6.493189 TGTATGAACCATGGAAGCAGTATA 57.507 37.500 21.47 4.37 0.00 1.47
18 19 5.372343 TGTATGAACCATGGAAGCAGTAT 57.628 39.130 21.47 5.31 0.00 2.12
19 20 4.835284 TGTATGAACCATGGAAGCAGTA 57.165 40.909 21.47 0.52 0.00 2.74
20 21 3.719268 TGTATGAACCATGGAAGCAGT 57.281 42.857 21.47 1.53 0.00 4.40
21 22 4.201657 TCATGTATGAACCATGGAAGCAG 58.798 43.478 21.47 1.42 40.07 4.24
22 23 4.233632 TCATGTATGAACCATGGAAGCA 57.766 40.909 21.47 13.35 40.07 3.91
23 24 4.883585 TCTTCATGTATGAACCATGGAAGC 59.116 41.667 21.47 7.54 41.51 3.86
24 25 7.395190 TTTCTTCATGTATGAACCATGGAAG 57.605 36.000 21.47 7.46 41.51 3.46
25 26 7.959658 ATTTCTTCATGTATGAACCATGGAA 57.040 32.000 21.47 3.61 41.51 3.53
85 86 9.807921 TCCCTCTGTAAAGAAAAATAAGAATGT 57.192 29.630 0.00 0.00 0.00 2.71
89 90 9.939802 GTACTCCCTCTGTAAAGAAAAATAAGA 57.060 33.333 0.00 0.00 0.00 2.10
90 91 9.720769 TGTACTCCCTCTGTAAAGAAAAATAAG 57.279 33.333 0.00 0.00 0.00 1.73
93 94 9.892130 CTATGTACTCCCTCTGTAAAGAAAAAT 57.108 33.333 0.00 0.00 0.00 1.82
94 95 9.096823 TCTATGTACTCCCTCTGTAAAGAAAAA 57.903 33.333 0.00 0.00 0.00 1.94
95 96 8.660295 TCTATGTACTCCCTCTGTAAAGAAAA 57.340 34.615 0.00 0.00 0.00 2.29
96 97 8.660295 TTCTATGTACTCCCTCTGTAAAGAAA 57.340 34.615 0.00 0.00 0.00 2.52
97 98 8.840200 ATTCTATGTACTCCCTCTGTAAAGAA 57.160 34.615 0.00 0.00 0.00 2.52
98 99 8.840200 AATTCTATGTACTCCCTCTGTAAAGA 57.160 34.615 0.00 0.00 0.00 2.52
100 101 9.710818 ACTAATTCTATGTACTCCCTCTGTAAA 57.289 33.333 0.00 0.00 0.00 2.01
101 102 9.132923 CACTAATTCTATGTACTCCCTCTGTAA 57.867 37.037 0.00 0.00 0.00 2.41
102 103 7.230913 GCACTAATTCTATGTACTCCCTCTGTA 59.769 40.741 0.00 0.00 0.00 2.74
103 104 6.041069 GCACTAATTCTATGTACTCCCTCTGT 59.959 42.308 0.00 0.00 0.00 3.41
104 105 6.040955 TGCACTAATTCTATGTACTCCCTCTG 59.959 42.308 0.00 0.00 0.00 3.35
105 106 6.136857 TGCACTAATTCTATGTACTCCCTCT 58.863 40.000 0.00 0.00 0.00 3.69
106 107 6.406692 TGCACTAATTCTATGTACTCCCTC 57.593 41.667 0.00 0.00 0.00 4.30
107 108 5.305644 CCTGCACTAATTCTATGTACTCCCT 59.694 44.000 0.00 0.00 0.00 4.20
108 109 5.304614 TCCTGCACTAATTCTATGTACTCCC 59.695 44.000 0.00 0.00 0.00 4.30
109 110 6.406692 TCCTGCACTAATTCTATGTACTCC 57.593 41.667 0.00 0.00 0.00 3.85
110 111 7.265673 TGTTCCTGCACTAATTCTATGTACTC 58.734 38.462 0.00 0.00 0.00 2.59
111 112 7.182817 TGTTCCTGCACTAATTCTATGTACT 57.817 36.000 0.00 0.00 0.00 2.73
112 113 8.979574 GTATGTTCCTGCACTAATTCTATGTAC 58.020 37.037 0.00 0.00 0.00 2.90
113 114 8.700973 TGTATGTTCCTGCACTAATTCTATGTA 58.299 33.333 0.00 0.00 0.00 2.29
114 115 7.564793 TGTATGTTCCTGCACTAATTCTATGT 58.435 34.615 0.00 0.00 0.00 2.29
115 116 8.437360 TTGTATGTTCCTGCACTAATTCTATG 57.563 34.615 0.00 0.00 0.00 2.23
116 117 8.893727 GTTTGTATGTTCCTGCACTAATTCTAT 58.106 33.333 0.00 0.00 0.00 1.98
117 118 7.880713 TGTTTGTATGTTCCTGCACTAATTCTA 59.119 33.333 0.00 0.00 0.00 2.10
118 119 6.714810 TGTTTGTATGTTCCTGCACTAATTCT 59.285 34.615 0.00 0.00 0.00 2.40
119 120 6.908825 TGTTTGTATGTTCCTGCACTAATTC 58.091 36.000 0.00 0.00 0.00 2.17
120 121 6.071952 CCTGTTTGTATGTTCCTGCACTAATT 60.072 38.462 0.00 0.00 0.00 1.40
121 122 5.415701 CCTGTTTGTATGTTCCTGCACTAAT 59.584 40.000 0.00 0.00 0.00 1.73
122 123 4.759693 CCTGTTTGTATGTTCCTGCACTAA 59.240 41.667 0.00 0.00 0.00 2.24
123 124 4.202419 ACCTGTTTGTATGTTCCTGCACTA 60.202 41.667 0.00 0.00 0.00 2.74
124 125 3.149196 CCTGTTTGTATGTTCCTGCACT 58.851 45.455 0.00 0.00 0.00 4.40
125 126 2.884639 ACCTGTTTGTATGTTCCTGCAC 59.115 45.455 0.00 0.00 0.00 4.57
126 127 3.222173 ACCTGTTTGTATGTTCCTGCA 57.778 42.857 0.00 0.00 0.00 4.41
127 128 4.379499 GCTTACCTGTTTGTATGTTCCTGC 60.379 45.833 0.00 0.00 0.00 4.85
128 129 4.759693 TGCTTACCTGTTTGTATGTTCCTG 59.240 41.667 0.00 0.00 0.00 3.86
129 130 4.760204 GTGCTTACCTGTTTGTATGTTCCT 59.240 41.667 0.00 0.00 0.00 3.36
130 131 4.760204 AGTGCTTACCTGTTTGTATGTTCC 59.240 41.667 0.00 0.00 0.00 3.62
131 132 5.941948 AGTGCTTACCTGTTTGTATGTTC 57.058 39.130 0.00 0.00 0.00 3.18
132 133 6.426937 CAGTAGTGCTTACCTGTTTGTATGTT 59.573 38.462 0.00 0.00 32.37 2.71
133 134 5.932303 CAGTAGTGCTTACCTGTTTGTATGT 59.068 40.000 0.00 0.00 32.37 2.29
134 135 6.408858 CAGTAGTGCTTACCTGTTTGTATG 57.591 41.667 0.00 0.00 32.37 2.39
150 151 1.630244 GGCTTCAGCGTGCAGTAGTG 61.630 60.000 0.00 0.00 43.26 2.74
151 152 1.374758 GGCTTCAGCGTGCAGTAGT 60.375 57.895 0.00 0.00 43.26 2.73
152 153 0.950555 TTGGCTTCAGCGTGCAGTAG 60.951 55.000 0.00 0.00 43.26 2.57
153 154 1.070615 TTGGCTTCAGCGTGCAGTA 59.929 52.632 0.00 0.00 43.26 2.74
154 155 2.203195 TTGGCTTCAGCGTGCAGT 60.203 55.556 0.00 0.00 43.26 4.40
155 156 2.253452 GTTGGCTTCAGCGTGCAG 59.747 61.111 0.00 0.00 43.26 4.41
156 157 3.648982 CGTTGGCTTCAGCGTGCA 61.649 61.111 0.00 0.00 43.26 4.57
158 159 4.724697 CGCGTTGGCTTCAGCGTG 62.725 66.667 0.00 3.55 45.69 5.34
161 162 2.401195 GATCGCGTTGGCTTCAGC 59.599 61.111 5.77 0.00 41.14 4.26
162 163 1.148157 ATCGATCGCGTTGGCTTCAG 61.148 55.000 11.09 0.00 38.98 3.02
163 164 0.739462 AATCGATCGCGTTGGCTTCA 60.739 50.000 11.09 0.00 38.98 3.02
164 165 0.315382 CAATCGATCGCGTTGGCTTC 60.315 55.000 11.09 0.00 38.98 3.86
165 166 1.705337 CCAATCGATCGCGTTGGCTT 61.705 55.000 27.50 0.00 39.72 4.35
166 167 2.173669 CCAATCGATCGCGTTGGCT 61.174 57.895 27.50 0.00 39.72 4.75
167 168 2.324477 CCAATCGATCGCGTTGGC 59.676 61.111 27.50 0.00 39.72 4.52
168 169 2.534019 CCCCAATCGATCGCGTTGG 61.534 63.158 29.75 29.75 42.74 3.77
169 170 2.534019 CCCCCAATCGATCGCGTTG 61.534 63.158 19.68 19.68 38.98 4.10
170 171 2.203015 CCCCCAATCGATCGCGTT 60.203 61.111 11.09 4.94 38.98 4.84
171 172 4.910585 GCCCCCAATCGATCGCGT 62.911 66.667 11.09 0.00 38.98 6.01
172 173 4.908687 TGCCCCCAATCGATCGCG 62.909 66.667 11.09 0.00 39.35 5.87
173 174 2.940890 TTCTGCCCCCAATCGATCGC 62.941 60.000 11.09 0.00 0.00 4.58
174 175 0.463654 TTTCTGCCCCCAATCGATCG 60.464 55.000 9.36 9.36 0.00 3.69
175 176 1.405463 GTTTTCTGCCCCCAATCGATC 59.595 52.381 0.00 0.00 0.00 3.69
176 177 1.005924 AGTTTTCTGCCCCCAATCGAT 59.994 47.619 0.00 0.00 0.00 3.59
177 178 0.404040 AGTTTTCTGCCCCCAATCGA 59.596 50.000 0.00 0.00 0.00 3.59
178 179 1.743394 GTAGTTTTCTGCCCCCAATCG 59.257 52.381 0.00 0.00 0.00 3.34
179 180 2.755103 CTGTAGTTTTCTGCCCCCAATC 59.245 50.000 0.00 0.00 0.00 2.67
180 181 2.110011 ACTGTAGTTTTCTGCCCCCAAT 59.890 45.455 0.00 0.00 0.00 3.16
181 182 1.497286 ACTGTAGTTTTCTGCCCCCAA 59.503 47.619 0.00 0.00 0.00 4.12
182 183 1.145571 ACTGTAGTTTTCTGCCCCCA 58.854 50.000 0.00 0.00 0.00 4.96
183 184 2.039348 TGTACTGTAGTTTTCTGCCCCC 59.961 50.000 0.00 0.00 0.00 5.40
184 185 3.335579 CTGTACTGTAGTTTTCTGCCCC 58.664 50.000 0.00 0.00 0.00 5.80
185 186 2.742589 GCTGTACTGTAGTTTTCTGCCC 59.257 50.000 1.46 0.00 0.00 5.36
186 187 2.412089 CGCTGTACTGTAGTTTTCTGCC 59.588 50.000 1.46 0.00 0.00 4.85
187 188 3.121445 GTCGCTGTACTGTAGTTTTCTGC 59.879 47.826 1.46 0.00 0.00 4.26
188 189 4.295870 TGTCGCTGTACTGTAGTTTTCTG 58.704 43.478 1.46 0.00 0.00 3.02
189 190 4.277672 TCTGTCGCTGTACTGTAGTTTTCT 59.722 41.667 1.46 0.00 0.00 2.52
190 191 4.543692 TCTGTCGCTGTACTGTAGTTTTC 58.456 43.478 1.46 0.00 0.00 2.29
191 192 4.579454 TCTGTCGCTGTACTGTAGTTTT 57.421 40.909 1.46 0.00 0.00 2.43
192 193 4.579454 TTCTGTCGCTGTACTGTAGTTT 57.421 40.909 1.46 0.00 0.00 2.66
193 194 4.486090 CATTCTGTCGCTGTACTGTAGTT 58.514 43.478 1.46 0.00 0.00 2.24
194 195 3.119459 CCATTCTGTCGCTGTACTGTAGT 60.119 47.826 1.46 0.00 0.00 2.73
195 196 3.439293 CCATTCTGTCGCTGTACTGTAG 58.561 50.000 1.46 0.00 0.00 2.74
196 197 2.165641 CCCATTCTGTCGCTGTACTGTA 59.834 50.000 1.46 0.00 0.00 2.74
197 198 1.066858 CCCATTCTGTCGCTGTACTGT 60.067 52.381 1.46 0.00 0.00 3.55
198 199 1.204704 TCCCATTCTGTCGCTGTACTG 59.795 52.381 0.00 0.00 0.00 2.74
199 200 1.557099 TCCCATTCTGTCGCTGTACT 58.443 50.000 0.00 0.00 0.00 2.73
200 201 2.380084 TTCCCATTCTGTCGCTGTAC 57.620 50.000 0.00 0.00 0.00 2.90
201 202 2.419990 CCATTCCCATTCTGTCGCTGTA 60.420 50.000 0.00 0.00 0.00 2.74
202 203 1.679944 CCATTCCCATTCTGTCGCTGT 60.680 52.381 0.00 0.00 0.00 4.40
203 204 1.019673 CCATTCCCATTCTGTCGCTG 58.980 55.000 0.00 0.00 0.00 5.18
204 205 0.107017 CCCATTCCCATTCTGTCGCT 60.107 55.000 0.00 0.00 0.00 4.93
205 206 1.103398 CCCCATTCCCATTCTGTCGC 61.103 60.000 0.00 0.00 0.00 5.19
206 207 0.466189 CCCCCATTCCCATTCTGTCG 60.466 60.000 0.00 0.00 0.00 4.35
207 208 0.926293 TCCCCCATTCCCATTCTGTC 59.074 55.000 0.00 0.00 0.00 3.51
208 209 1.392407 TTCCCCCATTCCCATTCTGT 58.608 50.000 0.00 0.00 0.00 3.41
209 210 2.781403 ATTCCCCCATTCCCATTCTG 57.219 50.000 0.00 0.00 0.00 3.02
210 211 3.801511 AAATTCCCCCATTCCCATTCT 57.198 42.857 0.00 0.00 0.00 2.40
211 212 3.779738 TGAAAATTCCCCCATTCCCATTC 59.220 43.478 0.00 0.00 0.00 2.67
212 213 3.523157 GTGAAAATTCCCCCATTCCCATT 59.477 43.478 0.00 0.00 0.00 3.16
213 214 3.114606 GTGAAAATTCCCCCATTCCCAT 58.885 45.455 0.00 0.00 0.00 4.00
214 215 2.158097 TGTGAAAATTCCCCCATTCCCA 60.158 45.455 0.00 0.00 0.00 4.37
215 216 2.545810 TGTGAAAATTCCCCCATTCCC 58.454 47.619 0.00 0.00 0.00 3.97
216 217 4.578871 CTTTGTGAAAATTCCCCCATTCC 58.421 43.478 0.00 0.00 0.00 3.01
217 218 4.002982 GCTTTGTGAAAATTCCCCCATTC 58.997 43.478 0.00 0.00 0.00 2.67
218 219 3.556843 CGCTTTGTGAAAATTCCCCCATT 60.557 43.478 0.00 0.00 0.00 3.16
219 220 2.028203 CGCTTTGTGAAAATTCCCCCAT 60.028 45.455 0.00 0.00 0.00 4.00
220 221 1.342819 CGCTTTGTGAAAATTCCCCCA 59.657 47.619 0.00 0.00 0.00 4.96
221 222 1.939381 GCGCTTTGTGAAAATTCCCCC 60.939 52.381 0.00 0.00 0.00 5.40
222 223 1.270041 TGCGCTTTGTGAAAATTCCCC 60.270 47.619 9.73 0.00 0.00 4.81
223 224 1.792367 GTGCGCTTTGTGAAAATTCCC 59.208 47.619 9.73 0.00 0.00 3.97
224 225 2.742774 AGTGCGCTTTGTGAAAATTCC 58.257 42.857 9.73 0.00 0.00 3.01
225 226 3.361940 GCTAGTGCGCTTTGTGAAAATTC 59.638 43.478 9.73 0.00 0.00 2.17
226 227 3.243367 TGCTAGTGCGCTTTGTGAAAATT 60.243 39.130 9.73 0.00 43.34 1.82
227 228 2.293122 TGCTAGTGCGCTTTGTGAAAAT 59.707 40.909 9.73 0.00 43.34 1.82
228 229 1.673400 TGCTAGTGCGCTTTGTGAAAA 59.327 42.857 9.73 0.00 43.34 2.29
229 230 1.002900 GTGCTAGTGCGCTTTGTGAAA 60.003 47.619 9.73 0.00 45.43 2.69
230 231 0.586319 GTGCTAGTGCGCTTTGTGAA 59.414 50.000 9.73 0.00 45.43 3.18
231 232 2.234613 GTGCTAGTGCGCTTTGTGA 58.765 52.632 9.73 0.00 45.43 3.58
232 233 4.826600 GTGCTAGTGCGCTTTGTG 57.173 55.556 9.73 0.00 45.43 3.33
238 239 1.964290 CTTGCTCTGTGCTAGTGCGC 61.964 60.000 0.00 0.00 46.30 6.09
239 240 0.389037 TCTTGCTCTGTGCTAGTGCG 60.389 55.000 11.66 0.00 46.30 5.34
240 241 1.664659 CATCTTGCTCTGTGCTAGTGC 59.335 52.381 11.66 8.13 43.33 4.40
241 242 2.969990 ACATCTTGCTCTGTGCTAGTG 58.030 47.619 11.66 11.29 43.33 2.74
242 243 3.332919 CAACATCTTGCTCTGTGCTAGT 58.667 45.455 11.66 0.00 43.33 2.57
254 255 5.106791 ACTCGAATTCTTCTGCAACATCTTG 60.107 40.000 3.52 0.00 0.00 3.02
255 256 4.999950 ACTCGAATTCTTCTGCAACATCTT 59.000 37.500 3.52 0.00 0.00 2.40
256 257 4.573900 ACTCGAATTCTTCTGCAACATCT 58.426 39.130 3.52 0.00 0.00 2.90
257 258 4.935885 ACTCGAATTCTTCTGCAACATC 57.064 40.909 3.52 0.00 0.00 3.06
258 259 4.143030 CGAACTCGAATTCTTCTGCAACAT 60.143 41.667 4.96 0.00 43.02 2.71
259 260 3.184379 CGAACTCGAATTCTTCTGCAACA 59.816 43.478 4.96 0.00 43.02 3.33
260 261 3.428870 TCGAACTCGAATTCTTCTGCAAC 59.571 43.478 4.96 0.00 46.30 4.17
261 262 3.649073 TCGAACTCGAATTCTTCTGCAA 58.351 40.909 4.96 0.00 46.30 4.08
262 263 3.297830 TCGAACTCGAATTCTTCTGCA 57.702 42.857 4.96 0.00 46.30 4.41
274 275 2.348666 CAGCATTTTACCCTCGAACTCG 59.651 50.000 0.00 0.00 41.45 4.18
275 276 2.096013 GCAGCATTTTACCCTCGAACTC 59.904 50.000 0.00 0.00 0.00 3.01
276 277 2.084546 GCAGCATTTTACCCTCGAACT 58.915 47.619 0.00 0.00 0.00 3.01
277 278 1.810151 TGCAGCATTTTACCCTCGAAC 59.190 47.619 0.00 0.00 0.00 3.95
278 279 2.192664 TGCAGCATTTTACCCTCGAA 57.807 45.000 0.00 0.00 0.00 3.71
279 280 2.192664 TTGCAGCATTTTACCCTCGA 57.807 45.000 0.00 0.00 0.00 4.04
280 281 3.508744 AATTGCAGCATTTTACCCTCG 57.491 42.857 0.00 0.00 0.00 4.63
281 282 4.183865 GGAAATTGCAGCATTTTACCCTC 58.816 43.478 13.91 3.41 0.00 4.30
282 283 3.582208 TGGAAATTGCAGCATTTTACCCT 59.418 39.130 18.36 0.00 0.00 4.34
283 284 3.936564 TGGAAATTGCAGCATTTTACCC 58.063 40.909 18.36 14.56 0.00 3.69
284 285 4.571984 GGATGGAAATTGCAGCATTTTACC 59.428 41.667 18.36 17.27 0.00 2.85
285 286 5.422145 AGGATGGAAATTGCAGCATTTTAC 58.578 37.500 15.45 15.45 0.00 2.01
286 287 5.680594 AGGATGGAAATTGCAGCATTTTA 57.319 34.783 13.91 2.25 0.00 1.52
287 288 4.563140 AGGATGGAAATTGCAGCATTTT 57.437 36.364 13.84 13.84 0.00 1.82
288 289 5.364446 TGATAGGATGGAAATTGCAGCATTT 59.636 36.000 4.96 0.00 0.00 2.32
289 290 4.897076 TGATAGGATGGAAATTGCAGCATT 59.103 37.500 4.96 0.00 0.00 3.56
290 291 4.280174 GTGATAGGATGGAAATTGCAGCAT 59.720 41.667 4.96 0.00 0.00 3.79
291 292 3.633525 GTGATAGGATGGAAATTGCAGCA 59.366 43.478 4.96 0.00 0.00 4.41
292 293 3.887716 AGTGATAGGATGGAAATTGCAGC 59.112 43.478 0.00 0.00 0.00 5.25
293 294 5.128205 TCAGTGATAGGATGGAAATTGCAG 58.872 41.667 0.00 0.00 0.00 4.41
294 295 5.114764 TCAGTGATAGGATGGAAATTGCA 57.885 39.130 0.00 0.00 0.00 4.08
295 296 5.533903 ACATCAGTGATAGGATGGAAATTGC 59.466 40.000 5.03 0.00 44.01 3.56
296 297 7.716560 TGTACATCAGTGATAGGATGGAAATTG 59.283 37.037 5.03 0.00 44.01 2.32
297 298 7.805163 TGTACATCAGTGATAGGATGGAAATT 58.195 34.615 5.03 0.00 44.01 1.82
298 299 7.379059 TGTACATCAGTGATAGGATGGAAAT 57.621 36.000 5.03 0.00 44.01 2.17
299 300 6.806668 TGTACATCAGTGATAGGATGGAAA 57.193 37.500 5.03 0.00 44.01 3.13
300 301 6.014242 GGATGTACATCAGTGATAGGATGGAA 60.014 42.308 31.51 0.00 44.01 3.53
301 302 5.481824 GGATGTACATCAGTGATAGGATGGA 59.518 44.000 31.51 0.00 44.01 3.41
302 303 5.246883 TGGATGTACATCAGTGATAGGATGG 59.753 44.000 31.51 0.00 44.01 3.51
303 304 6.350629 TGGATGTACATCAGTGATAGGATG 57.649 41.667 31.51 0.00 44.97 3.51
304 305 7.236225 TGATTGGATGTACATCAGTGATAGGAT 59.764 37.037 31.51 14.02 39.54 3.24
305 306 6.554605 TGATTGGATGTACATCAGTGATAGGA 59.445 38.462 31.51 10.62 39.54 2.94
306 307 6.648310 GTGATTGGATGTACATCAGTGATAGG 59.352 42.308 31.51 0.00 39.54 2.57
307 308 7.384387 CAGTGATTGGATGTACATCAGTGATAG 59.616 40.741 31.51 14.37 42.29 2.08
308 309 7.069826 TCAGTGATTGGATGTACATCAGTGATA 59.930 37.037 31.51 13.94 42.99 2.15
309 310 6.053650 CAGTGATTGGATGTACATCAGTGAT 58.946 40.000 31.51 20.15 42.29 3.06
310 311 5.187576 TCAGTGATTGGATGTACATCAGTGA 59.812 40.000 31.51 26.16 44.57 3.41
311 312 5.422145 TCAGTGATTGGATGTACATCAGTG 58.578 41.667 31.51 24.68 41.52 3.66
312 313 5.682234 TCAGTGATTGGATGTACATCAGT 57.318 39.130 31.51 19.01 39.54 3.41
313 314 5.876460 TGTTCAGTGATTGGATGTACATCAG 59.124 40.000 31.51 13.63 39.54 2.90
314 315 5.643348 GTGTTCAGTGATTGGATGTACATCA 59.357 40.000 31.51 16.59 39.54 3.07
315 316 5.877012 AGTGTTCAGTGATTGGATGTACATC 59.123 40.000 24.95 24.95 37.11 3.06
316 317 5.645067 CAGTGTTCAGTGATTGGATGTACAT 59.355 40.000 8.43 8.43 0.00 2.29
317 318 4.996758 CAGTGTTCAGTGATTGGATGTACA 59.003 41.667 0.00 0.00 0.00 2.90
318 319 5.237815 TCAGTGTTCAGTGATTGGATGTAC 58.762 41.667 6.27 0.00 0.00 2.90
319 320 5.482163 TCAGTGTTCAGTGATTGGATGTA 57.518 39.130 6.27 0.00 0.00 2.29
320 321 4.356405 TCAGTGTTCAGTGATTGGATGT 57.644 40.909 6.27 0.00 0.00 3.06
321 322 4.377738 CGTTCAGTGTTCAGTGATTGGATG 60.378 45.833 10.53 0.00 0.00 3.51
322 323 3.748048 CGTTCAGTGTTCAGTGATTGGAT 59.252 43.478 10.53 0.00 0.00 3.41
323 324 3.130633 CGTTCAGTGTTCAGTGATTGGA 58.869 45.455 10.53 0.00 0.00 3.53
324 325 3.059597 GTCGTTCAGTGTTCAGTGATTGG 60.060 47.826 10.53 4.63 0.00 3.16
325 326 3.555547 TGTCGTTCAGTGTTCAGTGATTG 59.444 43.478 10.53 7.08 0.00 2.67
326 327 3.792401 TGTCGTTCAGTGTTCAGTGATT 58.208 40.909 10.53 0.00 0.00 2.57
327 328 3.384668 CTGTCGTTCAGTGTTCAGTGAT 58.615 45.455 10.53 0.00 39.17 3.06
328 329 2.809446 CTGTCGTTCAGTGTTCAGTGA 58.191 47.619 6.27 6.27 39.17 3.41
329 330 1.258982 GCTGTCGTTCAGTGTTCAGTG 59.741 52.381 10.73 1.62 45.23 3.66
330 331 1.134818 TGCTGTCGTTCAGTGTTCAGT 60.135 47.619 10.73 0.00 45.23 3.41
331 332 1.524355 CTGCTGTCGTTCAGTGTTCAG 59.476 52.381 10.73 6.73 45.23 3.02
332 333 1.570813 CTGCTGTCGTTCAGTGTTCA 58.429 50.000 10.73 2.13 45.23 3.18
333 334 0.233332 GCTGCTGTCGTTCAGTGTTC 59.767 55.000 10.73 0.00 45.23 3.18
334 335 1.490693 CGCTGCTGTCGTTCAGTGTT 61.491 55.000 0.00 0.00 45.23 3.32
335 336 1.951130 CGCTGCTGTCGTTCAGTGT 60.951 57.895 0.00 0.00 45.23 3.55
336 337 1.612469 CTCGCTGCTGTCGTTCAGTG 61.612 60.000 0.00 0.00 45.23 3.66
337 338 1.372251 CTCGCTGCTGTCGTTCAGT 60.372 57.895 0.00 0.00 45.23 3.41
338 339 0.457509 ATCTCGCTGCTGTCGTTCAG 60.458 55.000 0.00 6.13 46.12 3.02
339 340 0.733909 CATCTCGCTGCTGTCGTTCA 60.734 55.000 0.00 0.00 0.00 3.18
340 341 1.994467 CATCTCGCTGCTGTCGTTC 59.006 57.895 0.00 0.00 0.00 3.95
341 342 2.097038 GCATCTCGCTGCTGTCGTT 61.097 57.895 0.00 0.00 39.12 3.85
342 343 2.507992 GCATCTCGCTGCTGTCGT 60.508 61.111 0.00 0.00 39.12 4.34
343 344 3.614659 CGCATCTCGCTGCTGTCG 61.615 66.667 0.00 0.00 40.06 4.35
344 345 3.260483 CCGCATCTCGCTGCTGTC 61.260 66.667 0.00 0.00 40.06 3.51
349 350 1.595109 TAATGGCCGCATCTCGCTG 60.595 57.895 0.00 0.00 39.08 5.18
350 351 1.595382 GTAATGGCCGCATCTCGCT 60.595 57.895 0.00 0.00 39.08 4.93
351 352 1.436195 TTGTAATGGCCGCATCTCGC 61.436 55.000 0.00 0.00 36.73 5.03
352 353 1.069703 CATTGTAATGGCCGCATCTCG 60.070 52.381 0.00 0.00 33.71 4.04
353 354 2.221169 TCATTGTAATGGCCGCATCTC 58.779 47.619 0.00 0.00 37.03 2.75
354 355 2.346766 TCATTGTAATGGCCGCATCT 57.653 45.000 0.00 0.00 37.03 2.90
355 356 2.618241 TCTTCATTGTAATGGCCGCATC 59.382 45.455 0.00 0.00 37.03 3.91
356 357 2.358898 GTCTTCATTGTAATGGCCGCAT 59.641 45.455 0.00 0.00 37.03 4.73
357 358 1.742831 GTCTTCATTGTAATGGCCGCA 59.257 47.619 0.00 0.00 37.03 5.69
358 359 1.742831 TGTCTTCATTGTAATGGCCGC 59.257 47.619 0.00 0.00 37.03 6.53
359 360 4.096231 TCATTGTCTTCATTGTAATGGCCG 59.904 41.667 0.00 0.00 37.03 6.13
360 361 5.581126 TCATTGTCTTCATTGTAATGGCC 57.419 39.130 0.00 0.00 37.03 5.36
361 362 6.308766 GTGTTCATTGTCTTCATTGTAATGGC 59.691 38.462 4.89 0.00 37.03 4.40
362 363 7.539710 CAGTGTTCATTGTCTTCATTGTAATGG 59.460 37.037 4.89 0.00 37.03 3.16
363 364 8.291740 TCAGTGTTCATTGTCTTCATTGTAATG 58.708 33.333 0.00 0.00 37.75 1.90
364 365 8.394971 TCAGTGTTCATTGTCTTCATTGTAAT 57.605 30.769 0.00 0.00 0.00 1.89
365 366 7.800155 TCAGTGTTCATTGTCTTCATTGTAA 57.200 32.000 0.00 0.00 0.00 2.41
366 367 7.281999 TGTTCAGTGTTCATTGTCTTCATTGTA 59.718 33.333 0.00 0.00 0.00 2.41
367 368 6.095300 TGTTCAGTGTTCATTGTCTTCATTGT 59.905 34.615 0.00 0.00 0.00 2.71
368 369 6.497437 TGTTCAGTGTTCATTGTCTTCATTG 58.503 36.000 0.00 0.00 0.00 2.82
369 370 6.238842 CCTGTTCAGTGTTCATTGTCTTCATT 60.239 38.462 0.00 0.00 0.00 2.57
370 371 5.240183 CCTGTTCAGTGTTCATTGTCTTCAT 59.760 40.000 0.00 0.00 0.00 2.57
371 372 4.576053 CCTGTTCAGTGTTCATTGTCTTCA 59.424 41.667 0.00 0.00 0.00 3.02
372 373 4.023707 CCCTGTTCAGTGTTCATTGTCTTC 60.024 45.833 0.00 0.00 0.00 2.87
373 374 3.885297 CCCTGTTCAGTGTTCATTGTCTT 59.115 43.478 0.00 0.00 0.00 3.01
374 375 3.480470 CCCTGTTCAGTGTTCATTGTCT 58.520 45.455 0.00 0.00 0.00 3.41
375 376 2.030805 GCCCTGTTCAGTGTTCATTGTC 60.031 50.000 0.00 0.00 0.00 3.18
376 377 1.956477 GCCCTGTTCAGTGTTCATTGT 59.044 47.619 0.00 0.00 0.00 2.71
377 378 1.069022 CGCCCTGTTCAGTGTTCATTG 60.069 52.381 0.00 0.00 0.00 2.82
378 379 1.238439 CGCCCTGTTCAGTGTTCATT 58.762 50.000 0.00 0.00 0.00 2.57
379 380 1.237285 GCGCCCTGTTCAGTGTTCAT 61.237 55.000 0.00 0.00 0.00 2.57
380 381 1.891919 GCGCCCTGTTCAGTGTTCA 60.892 57.895 0.00 0.00 0.00 3.18
381 382 2.946762 GCGCCCTGTTCAGTGTTC 59.053 61.111 0.00 0.00 0.00 3.18
382 383 2.972505 CGCGCCCTGTTCAGTGTT 60.973 61.111 0.00 0.00 0.00 3.32
383 384 4.988598 CCGCGCCCTGTTCAGTGT 62.989 66.667 0.00 0.00 0.00 3.55
408 409 1.379146 GAAACACACCTCCTCCCCC 59.621 63.158 0.00 0.00 0.00 5.40
409 410 1.134438 AGGAAACACACCTCCTCCCC 61.134 60.000 0.00 0.00 37.53 4.81
410 411 2.464582 AGGAAACACACCTCCTCCC 58.535 57.895 0.00 0.00 37.53 4.30
416 417 1.541233 CGCTCTTGAGGAAACACACCT 60.541 52.381 0.00 0.00 40.80 4.00
417 418 0.868406 CGCTCTTGAGGAAACACACC 59.132 55.000 0.00 0.00 0.00 4.16
418 419 1.795286 CTCGCTCTTGAGGAAACACAC 59.205 52.381 0.00 0.00 32.18 3.82
419 420 2.154854 CTCGCTCTTGAGGAAACACA 57.845 50.000 0.00 0.00 32.18 3.72
427 428 1.137825 GGTCGACCTCGCTCTTGAG 59.862 63.158 27.64 0.00 39.60 3.02
428 429 1.303398 AGGTCGACCTCGCTCTTGA 60.303 57.895 31.69 0.00 44.77 3.02
429 430 3.279183 AGGTCGACCTCGCTCTTG 58.721 61.111 31.69 0.00 44.77 3.02
442 443 3.551407 GGGGAGGCCATCGAGGTC 61.551 72.222 5.01 0.00 44.66 3.85
443 444 3.943137 TTGGGGAGGCCATCGAGGT 62.943 63.158 5.01 0.00 40.61 3.85
444 445 2.455565 ATTGGGGAGGCCATCGAGG 61.456 63.158 5.01 0.00 41.84 4.63
445 446 1.228063 CATTGGGGAGGCCATCGAG 60.228 63.158 5.01 0.00 0.00 4.04
446 447 1.061905 ATCATTGGGGAGGCCATCGA 61.062 55.000 5.01 0.00 0.00 3.59
620 623 0.608130 AGAGTTCTATGGCGCACACA 59.392 50.000 10.83 0.00 0.00 3.72
621 624 1.002366 CAGAGTTCTATGGCGCACAC 58.998 55.000 10.83 0.00 0.00 3.82
634 637 5.362430 AGTTCAGAGTTCAGAGTTCAGAGTT 59.638 40.000 0.00 0.00 0.00 3.01
635 638 4.892934 AGTTCAGAGTTCAGAGTTCAGAGT 59.107 41.667 0.00 0.00 0.00 3.24
637 640 4.889995 TCAGTTCAGAGTTCAGAGTTCAGA 59.110 41.667 0.00 0.00 0.00 3.27
638 641 5.193663 TCAGTTCAGAGTTCAGAGTTCAG 57.806 43.478 0.00 0.00 0.00 3.02
716 719 9.627395 AATGAATCCGAGTAGTATAAGAAATCG 57.373 33.333 0.00 0.00 0.00 3.34
727 730 6.710597 TTAGCACTAATGAATCCGAGTAGT 57.289 37.500 0.00 0.00 0.00 2.73
750 753 9.129532 GATGAATCTTTCCATCTTTCCAACTAT 57.870 33.333 0.00 0.00 36.97 2.12
843 957 0.252479 AGAGACGCGGGAGAGTAAGA 59.748 55.000 12.47 0.00 44.97 2.10
844 958 1.064357 GAAGAGACGCGGGAGAGTAAG 59.936 57.143 12.47 0.00 44.97 2.34
845 959 1.093159 GAAGAGACGCGGGAGAGTAA 58.907 55.000 12.47 0.00 44.97 2.24
846 960 0.252479 AGAAGAGACGCGGGAGAGTA 59.748 55.000 12.47 0.00 44.97 2.59
848 962 0.528470 AAAGAAGAGACGCGGGAGAG 59.472 55.000 12.47 0.00 0.00 3.20
1226 1452 3.997064 CTGCTGGGAGACGGAAGCG 62.997 68.421 0.00 0.00 38.53 4.68
1317 1579 1.355563 CATGCTCATCTGCGGCTTG 59.644 57.895 0.00 0.00 35.36 4.01
1807 3718 9.449719 GGGATTGAAAGAACACTAGAAATCTTA 57.550 33.333 0.00 0.00 32.13 2.10
1986 3897 4.853007 AGGCTCATCTGCTTTACTTTGAT 58.147 39.130 0.00 0.00 0.00 2.57
2276 4187 5.239306 CACATACACACAAGAGTTCACCAAT 59.761 40.000 0.00 0.00 0.00 3.16
2388 4299 2.555325 TGCTCTGCAAAATTCAGACCAG 59.445 45.455 0.00 0.00 35.81 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.