Multiple sequence alignment - TraesCS7B01G333700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G333700 chr7B 100.000 5696 0 0 1 5696 588883893 588878198 0.000000e+00 10519.0
1 TraesCS7B01G333700 chr7B 89.899 495 48 2 966 1459 588869416 588868923 2.240000e-178 636.0
2 TraesCS7B01G333700 chr7B 99.248 133 1 0 5267 5399 589919489 589919621 2.050000e-59 241.0
3 TraesCS7B01G333700 chr7B 91.781 146 8 2 5475 5619 589919754 589919896 3.480000e-47 200.0
4 TraesCS7B01G333700 chr7B 87.821 156 8 2 5455 5610 498300237 498300093 7.590000e-39 172.0
5 TraesCS7B01G333700 chr7B 100.000 39 0 0 5576 5614 589735140 589735178 7.920000e-09 73.1
6 TraesCS7B01G333700 chr7B 100.000 28 0 0 5267 5294 589934822 589934849 1.000000e-02 52.8
7 TraesCS7B01G333700 chr1B 93.146 3487 131 39 813 4220 133129201 133125744 0.000000e+00 5016.0
8 TraesCS7B01G333700 chr1B 84.036 2017 251 55 2918 4904 426499555 426497580 0.000000e+00 1875.0
9 TraesCS7B01G333700 chr1B 83.742 1956 253 48 2964 4892 133113911 133111994 0.000000e+00 1790.0
10 TraesCS7B01G333700 chr1B 95.009 1062 45 3 4341 5399 133125528 133124472 0.000000e+00 1661.0
11 TraesCS7B01G333700 chr1B 87.046 826 80 20 2 817 133134013 133133205 0.000000e+00 907.0
12 TraesCS7B01G333700 chr1B 86.679 563 60 11 892 1449 426502678 426502126 1.360000e-170 610.0
13 TraesCS7B01G333700 chr1B 95.000 260 6 3 5438 5696 133124348 133124095 8.890000e-108 401.0
14 TraesCS7B01G333700 chr1B 82.530 332 46 11 441 765 334452953 334453279 1.210000e-71 281.0
15 TraesCS7B01G333700 chr5D 92.085 2451 107 23 828 3195 289501317 289498871 0.000000e+00 3371.0
16 TraesCS7B01G333700 chr5D 83.453 1952 262 42 2899 4828 289423452 289421540 0.000000e+00 1759.0
17 TraesCS7B01G333700 chr5D 92.851 1119 57 9 4343 5449 289356690 289355583 0.000000e+00 1602.0
18 TraesCS7B01G333700 chr5D 90.167 956 79 11 3802 4745 289728673 289727721 0.000000e+00 1230.0
19 TraesCS7B01G333700 chr5D 84.422 597 56 21 859 1449 289425321 289424756 2.320000e-153 553.0
20 TraesCS7B01G333700 chr5D 97.000 300 9 0 3223 3522 289498874 289498575 6.590000e-139 505.0
21 TraesCS7B01G333700 chr5D 82.383 386 53 9 434 813 196425748 196426124 7.120000e-84 322.0
22 TraesCS7B01G333700 chr5D 88.272 162 10 2 5459 5619 289355493 289355340 9.750000e-43 185.0
23 TraesCS7B01G333700 chr5D 94.286 35 2 0 5585 5619 289727238 289727204 3.000000e-03 54.7
24 TraesCS7B01G333700 chr7A 94.510 1603 80 7 2623 4220 627236816 627235217 0.000000e+00 2466.0
25 TraesCS7B01G333700 chr7A 83.089 2046 282 53 2899 4917 627047828 627045820 0.000000e+00 1803.0
26 TraesCS7B01G333700 chr7A 87.584 1490 68 33 1211 2626 627238390 627236944 0.000000e+00 1618.0
27 TraesCS7B01G333700 chr7A 90.363 965 85 6 3716 4674 580506000 580505038 0.000000e+00 1260.0
28 TraesCS7B01G333700 chr7A 88.361 653 58 15 4261 4904 627120664 627120021 0.000000e+00 769.0
29 TraesCS7B01G333700 chr7A 90.161 498 47 2 953 1449 628363822 628363326 0.000000e+00 647.0
30 TraesCS7B01G333700 chr7A 89.712 486 48 2 966 1450 627165853 627165369 2.250000e-173 619.0
31 TraesCS7B01G333700 chr7A 76.848 717 148 13 2899 3609 627010059 627009355 6.920000e-104 388.0
32 TraesCS7B01G333700 chr7A 88.889 144 9 5 5026 5169 628386313 628386177 2.730000e-38 171.0
33 TraesCS7B01G333700 chr7A 96.970 99 2 1 5256 5354 627234228 627234131 1.270000e-36 165.0
34 TraesCS7B01G333700 chr7A 97.500 80 2 0 5540 5619 628386020 628385941 2.770000e-28 137.0
35 TraesCS7B01G333700 chr7A 80.000 100 11 6 5202 5296 580504702 580504607 1.320000e-06 65.8
36 TraesCS7B01G333700 chr7A 97.222 36 1 0 5380 5415 627234156 627234121 1.710000e-05 62.1
37 TraesCS7B01G333700 chr7A 97.143 35 1 0 5585 5619 627008772 627008738 6.160000e-05 60.2
38 TraesCS7B01G333700 chr7A 96.970 33 1 0 5509 5541 627232648 627232616 7.970000e-04 56.5
39 TraesCS7B01G333700 chr2B 95.573 881 33 4 3345 4220 127792235 127791356 0.000000e+00 1406.0
40 TraesCS7B01G333700 chr2B 89.504 867 77 12 3978 4838 182135165 182134307 0.000000e+00 1085.0
41 TraesCS7B01G333700 chr2B 96.735 582 18 1 3446 4026 135510219 135510800 0.000000e+00 968.0
42 TraesCS7B01G333700 chr2B 93.506 539 35 0 890 1428 182147906 182147368 0.000000e+00 802.0
43 TraesCS7B01G333700 chr2B 80.682 528 93 4 2972 3499 182141045 182140527 8.890000e-108 401.0
44 TraesCS7B01G333700 chr2B 91.720 157 6 4 5200 5354 135512325 135512476 1.610000e-50 211.0
45 TraesCS7B01G333700 chr2B 100.000 45 0 0 5569 5613 135512529 135512573 3.660000e-12 84.2
46 TraesCS7B01G333700 chr2B 93.750 48 3 0 5489 5536 135512479 135512526 7.920000e-09 73.1
47 TraesCS7B01G333700 chr6A 89.972 1087 89 13 3827 4906 107262745 107263818 0.000000e+00 1386.0
48 TraesCS7B01G333700 chr6A 81.183 186 18 6 5528 5696 107264255 107264440 3.580000e-27 134.0
49 TraesCS7B01G333700 chr6A 93.478 46 3 0 7 52 449641418 449641373 1.020000e-07 69.4
50 TraesCS7B01G333700 chr6A 100.000 32 0 0 5257 5288 107264075 107264106 6.160000e-05 60.2
51 TraesCS7B01G333700 chr7D 90.115 1042 69 15 414 1449 545271107 545270094 0.000000e+00 1323.0
52 TraesCS7B01G333700 chr7D 84.783 184 19 5 4988 5162 509580053 509579870 5.870000e-40 176.0
53 TraesCS7B01G333700 chr7D 85.185 81 9 2 5202 5280 509599036 509598957 4.730000e-11 80.5
54 TraesCS7B01G333700 chr7D 96.875 32 0 1 5049 5079 545254722 545254753 1.000000e-02 52.8
55 TraesCS7B01G333700 chrUn 86.856 563 59 11 892 1449 383291300 383291852 2.920000e-172 616.0
56 TraesCS7B01G333700 chr6B 82.751 429 48 13 391 813 668971481 668971073 5.430000e-95 359.0
57 TraesCS7B01G333700 chr6B 82.799 343 43 14 434 767 217113858 217113523 5.580000e-75 292.0
58 TraesCS7B01G333700 chr6B 81.505 319 45 10 440 748 146819272 146818958 3.410000e-62 250.0
59 TraesCS7B01G333700 chr3A 80.370 433 42 17 391 814 699856808 699856410 7.220000e-74 289.0
60 TraesCS7B01G333700 chr6D 83.386 319 40 11 440 749 123124705 123124391 3.360000e-72 283.0
61 TraesCS7B01G333700 chr6D 82.334 317 42 10 441 748 442267869 442267558 4.380000e-66 263.0
62 TraesCS7B01G333700 chr4D 79.597 397 63 14 442 828 28782357 28781969 9.410000e-68 268.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G333700 chr7B 588878198 588883893 5695 True 10519.000000 10519 100.00000 1 5696 1 chr7B.!!$R3 5695
1 TraesCS7B01G333700 chr1B 133124095 133129201 5106 True 2359.333333 5016 94.38500 813 5696 3 chr1B.!!$R3 4883
2 TraesCS7B01G333700 chr1B 133111994 133113911 1917 True 1790.000000 1790 83.74200 2964 4892 1 chr1B.!!$R1 1928
3 TraesCS7B01G333700 chr1B 426497580 426502678 5098 True 1242.500000 1875 85.35750 892 4904 2 chr1B.!!$R4 4012
4 TraesCS7B01G333700 chr1B 133133205 133134013 808 True 907.000000 907 87.04600 2 817 1 chr1B.!!$R2 815
5 TraesCS7B01G333700 chr5D 289498575 289501317 2742 True 1938.000000 3371 94.54250 828 3522 2 chr5D.!!$R3 2694
6 TraesCS7B01G333700 chr5D 289421540 289425321 3781 True 1156.000000 1759 83.93750 859 4828 2 chr5D.!!$R2 3969
7 TraesCS7B01G333700 chr5D 289355340 289356690 1350 True 893.500000 1602 90.56150 4343 5619 2 chr5D.!!$R1 1276
8 TraesCS7B01G333700 chr5D 289727204 289728673 1469 True 642.350000 1230 92.22650 3802 5619 2 chr5D.!!$R4 1817
9 TraesCS7B01G333700 chr7A 627045820 627047828 2008 True 1803.000000 1803 83.08900 2899 4917 1 chr7A.!!$R1 2018
10 TraesCS7B01G333700 chr7A 627232616 627238390 5774 True 873.520000 2466 94.65120 1211 5541 5 chr7A.!!$R7 4330
11 TraesCS7B01G333700 chr7A 627120021 627120664 643 True 769.000000 769 88.36100 4261 4904 1 chr7A.!!$R2 643
12 TraesCS7B01G333700 chr7A 580504607 580506000 1393 True 662.900000 1260 85.18150 3716 5296 2 chr7A.!!$R5 1580
13 TraesCS7B01G333700 chr7A 627008738 627010059 1321 True 224.100000 388 86.99550 2899 5619 2 chr7A.!!$R6 2720
14 TraesCS7B01G333700 chr2B 127791356 127792235 879 True 1406.000000 1406 95.57300 3345 4220 1 chr2B.!!$R1 875
15 TraesCS7B01G333700 chr2B 182134307 182135165 858 True 1085.000000 1085 89.50400 3978 4838 1 chr2B.!!$R2 860
16 TraesCS7B01G333700 chr2B 182147368 182147906 538 True 802.000000 802 93.50600 890 1428 1 chr2B.!!$R4 538
17 TraesCS7B01G333700 chr2B 182140527 182141045 518 True 401.000000 401 80.68200 2972 3499 1 chr2B.!!$R3 527
18 TraesCS7B01G333700 chr2B 135510219 135512573 2354 False 334.075000 968 95.55125 3446 5613 4 chr2B.!!$F1 2167
19 TraesCS7B01G333700 chr6A 107262745 107264440 1695 False 526.733333 1386 90.38500 3827 5696 3 chr6A.!!$F1 1869
20 TraesCS7B01G333700 chr7D 545270094 545271107 1013 True 1323.000000 1323 90.11500 414 1449 1 chr7D.!!$R3 1035
21 TraesCS7B01G333700 chrUn 383291300 383291852 552 False 616.000000 616 86.85600 892 1449 1 chrUn.!!$F1 557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.029035 CGAATGTCGTCGAGGTAGGG 59.971 60.000 4.85 0.00 43.86 3.53 F
186 187 0.035739 TGGCCTTCCGGTTTACACTC 59.964 55.000 3.32 0.00 34.14 3.51 F
370 371 0.172578 ACGAGAATGCGACATTCCGA 59.827 50.000 27.70 0.00 34.83 4.55 F
421 422 0.249868 TTTGGTGACCGAGCTCACTG 60.250 55.000 15.40 3.86 40.50 3.66 F
788 791 0.918983 ATTTGGAGGCCTCGATGGAA 59.081 50.000 26.36 14.26 38.35 3.53 F
1679 1721 1.305219 TGCAATTCGGTACTGGCAGC 61.305 55.000 15.89 0.00 0.00 5.25 F
2253 2475 1.323534 GTCAAGTTATGTAGCCGTGCG 59.676 52.381 0.00 0.00 0.00 5.34 F
3063 5177 0.037326 CTCGCTGAGCTTTGTACCCA 60.037 55.000 1.78 0.00 0.00 4.51 F
3819 5942 2.509548 ACCTGCATAAAGGCTCCATGTA 59.490 45.455 9.30 4.99 41.46 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1769 1892 0.531532 CGGCCTGCTAGACAAGGATG 60.532 60.000 0.00 0.00 0.00 3.51 R
1910 2060 1.021202 TGGTCAAAGACGCCACAAAG 58.979 50.000 0.00 0.00 32.65 2.77 R
2354 4120 1.276421 TCAGTAGCTCCTTGAACCTGC 59.724 52.381 0.00 0.00 0.00 4.85 R
2465 4231 6.866770 TGAAACGTCACTCTACTAATTTCCAG 59.133 38.462 0.00 0.00 0.00 3.86 R
2484 4250 6.464895 AACAAATAACATTGGCATGAAACG 57.535 33.333 0.00 0.00 34.56 3.60 R
2627 4523 6.642683 ACAAGTATGCACGTGTATAACTTC 57.357 37.500 25.04 14.18 44.19 3.01 R
3819 5942 2.826488 AGTCTCTATGGACAAGGCAGT 58.174 47.619 0.00 0.00 38.57 4.40 R
4365 7390 0.035630 GCTCATGCAACCTCTGGTCT 60.036 55.000 0.00 0.00 39.41 3.85 R
5537 10227 0.526096 CGGATTCAAATTGCCTGCCG 60.526 55.000 0.00 0.00 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.012086 TCGAATGTCGTCGAGGTAGG 58.988 55.000 4.85 0.00 44.76 3.18
21 22 0.029035 CGAATGTCGTCGAGGTAGGG 59.971 60.000 4.85 0.00 43.86 3.53
22 23 1.386533 GAATGTCGTCGAGGTAGGGA 58.613 55.000 4.85 0.00 0.00 4.20
23 24 1.334243 GAATGTCGTCGAGGTAGGGAG 59.666 57.143 4.85 0.00 0.00 4.30
24 25 0.545171 ATGTCGTCGAGGTAGGGAGA 59.455 55.000 4.85 0.00 0.00 3.71
25 26 0.107800 TGTCGTCGAGGTAGGGAGAG 60.108 60.000 4.85 0.00 0.00 3.20
26 27 0.814812 GTCGTCGAGGTAGGGAGAGG 60.815 65.000 4.85 0.00 0.00 3.69
27 28 2.188161 CGTCGAGGTAGGGAGAGGC 61.188 68.421 0.00 0.00 0.00 4.70
28 29 1.227946 GTCGAGGTAGGGAGAGGCT 59.772 63.158 0.00 0.00 0.00 4.58
29 30 1.104577 GTCGAGGTAGGGAGAGGCTG 61.105 65.000 0.00 0.00 0.00 4.85
30 31 1.830408 CGAGGTAGGGAGAGGCTGG 60.830 68.421 0.00 0.00 0.00 4.85
31 32 1.621377 GAGGTAGGGAGAGGCTGGA 59.379 63.158 0.00 0.00 0.00 3.86
32 33 0.469144 GAGGTAGGGAGAGGCTGGAG 60.469 65.000 0.00 0.00 0.00 3.86
33 34 0.926720 AGGTAGGGAGAGGCTGGAGA 60.927 60.000 0.00 0.00 0.00 3.71
34 35 0.469144 GGTAGGGAGAGGCTGGAGAG 60.469 65.000 0.00 0.00 0.00 3.20
35 36 0.553819 GTAGGGAGAGGCTGGAGAGA 59.446 60.000 0.00 0.00 0.00 3.10
36 37 0.553819 TAGGGAGAGGCTGGAGAGAC 59.446 60.000 0.00 0.00 0.00 3.36
37 38 1.760480 GGGAGAGGCTGGAGAGACC 60.760 68.421 0.00 0.00 39.54 3.85
38 39 1.760480 GGAGAGGCTGGAGAGACCC 60.760 68.421 0.00 0.00 38.00 4.46
39 40 1.309688 GAGAGGCTGGAGAGACCCT 59.690 63.158 0.00 0.00 38.00 4.34
40 41 0.553819 GAGAGGCTGGAGAGACCCTA 59.446 60.000 0.00 0.00 38.00 3.53
41 42 1.146982 GAGAGGCTGGAGAGACCCTAT 59.853 57.143 0.00 0.00 38.00 2.57
42 43 1.578215 AGAGGCTGGAGAGACCCTATT 59.422 52.381 0.00 0.00 38.00 1.73
43 44 1.967779 GAGGCTGGAGAGACCCTATTC 59.032 57.143 0.00 0.00 38.00 1.75
44 45 1.052617 GGCTGGAGAGACCCTATTCC 58.947 60.000 0.00 0.00 38.00 3.01
45 46 1.692762 GGCTGGAGAGACCCTATTCCA 60.693 57.143 0.00 0.00 37.38 3.53
46 47 2.119495 GCTGGAGAGACCCTATTCCAA 58.881 52.381 0.00 0.00 39.11 3.53
47 48 2.505819 GCTGGAGAGACCCTATTCCAAA 59.494 50.000 0.00 0.00 39.11 3.28
48 49 3.054361 GCTGGAGAGACCCTATTCCAAAA 60.054 47.826 0.00 0.00 39.11 2.44
49 50 4.385754 GCTGGAGAGACCCTATTCCAAAAT 60.386 45.833 0.00 0.00 39.11 1.82
50 51 5.116084 TGGAGAGACCCTATTCCAAAATG 57.884 43.478 0.00 0.00 36.81 2.32
51 52 4.788075 TGGAGAGACCCTATTCCAAAATGA 59.212 41.667 0.00 0.00 36.81 2.57
52 53 5.104360 TGGAGAGACCCTATTCCAAAATGAG 60.104 44.000 0.00 0.00 36.81 2.90
53 54 5.104318 GGAGAGACCCTATTCCAAAATGAGT 60.104 44.000 0.00 0.00 0.00 3.41
54 55 5.749462 AGAGACCCTATTCCAAAATGAGTG 58.251 41.667 0.00 0.00 0.00 3.51
55 56 5.488919 AGAGACCCTATTCCAAAATGAGTGA 59.511 40.000 0.00 0.00 0.00 3.41
56 57 6.012508 AGAGACCCTATTCCAAAATGAGTGAA 60.013 38.462 0.00 0.00 0.00 3.18
57 58 6.183347 AGACCCTATTCCAAAATGAGTGAAG 58.817 40.000 0.00 0.00 0.00 3.02
58 59 5.892348 ACCCTATTCCAAAATGAGTGAAGT 58.108 37.500 0.00 0.00 0.00 3.01
59 60 6.314917 ACCCTATTCCAAAATGAGTGAAGTT 58.685 36.000 0.00 0.00 0.00 2.66
60 61 6.209391 ACCCTATTCCAAAATGAGTGAAGTTG 59.791 38.462 0.00 0.00 0.00 3.16
61 62 6.095377 CCTATTCCAAAATGAGTGAAGTTGC 58.905 40.000 0.00 0.00 0.00 4.17
62 63 5.796424 ATTCCAAAATGAGTGAAGTTGCT 57.204 34.783 0.00 0.00 0.00 3.91
63 64 5.596836 TTCCAAAATGAGTGAAGTTGCTT 57.403 34.783 0.00 0.00 0.00 3.91
64 65 5.186996 TCCAAAATGAGTGAAGTTGCTTC 57.813 39.130 2.22 2.22 40.54 3.86
65 66 4.037923 TCCAAAATGAGTGAAGTTGCTTCC 59.962 41.667 6.44 0.00 39.51 3.46
66 67 4.202141 CCAAAATGAGTGAAGTTGCTTCCA 60.202 41.667 6.44 0.00 39.51 3.53
67 68 5.510179 CCAAAATGAGTGAAGTTGCTTCCAT 60.510 40.000 6.44 1.17 39.51 3.41
68 69 4.778534 AATGAGTGAAGTTGCTTCCATG 57.221 40.909 6.44 0.00 39.51 3.66
69 70 3.213206 TGAGTGAAGTTGCTTCCATGT 57.787 42.857 6.44 0.00 39.51 3.21
70 71 4.350368 TGAGTGAAGTTGCTTCCATGTA 57.650 40.909 6.44 0.00 39.51 2.29
71 72 4.910195 TGAGTGAAGTTGCTTCCATGTAT 58.090 39.130 6.44 0.00 39.51 2.29
72 73 4.696877 TGAGTGAAGTTGCTTCCATGTATG 59.303 41.667 6.44 0.00 39.51 2.39
97 98 9.860650 TGGCAGTATTAGATAATTTTATGGTGT 57.139 29.630 0.00 0.00 0.00 4.16
111 112 9.520515 AATTTTATGGTGTGAACATAGAAGACT 57.479 29.630 0.00 0.00 31.24 3.24
112 113 8.918202 TTTTATGGTGTGAACATAGAAGACTT 57.082 30.769 0.00 0.00 32.85 3.01
113 114 8.918202 TTTATGGTGTGAACATAGAAGACTTT 57.082 30.769 0.00 0.00 32.85 2.66
114 115 8.547967 TTATGGTGTGAACATAGAAGACTTTC 57.452 34.615 0.00 0.00 32.85 2.62
115 116 6.174720 TGGTGTGAACATAGAAGACTTTCT 57.825 37.500 0.00 0.00 45.45 2.52
116 117 6.591935 TGGTGTGAACATAGAAGACTTTCTT 58.408 36.000 0.00 0.00 40.79 2.52
117 118 7.054124 TGGTGTGAACATAGAAGACTTTCTTT 58.946 34.615 0.00 0.00 40.79 2.52
118 119 8.208224 TGGTGTGAACATAGAAGACTTTCTTTA 58.792 33.333 0.00 0.00 40.79 1.85
119 120 9.220767 GGTGTGAACATAGAAGACTTTCTTTAT 57.779 33.333 0.00 0.00 40.79 1.40
121 122 9.778741 TGTGAACATAGAAGACTTTCTTTATGT 57.221 29.630 12.80 12.80 40.79 2.29
123 124 9.219603 TGAACATAGAAGACTTTCTTTATGTGG 57.780 33.333 16.15 1.25 40.79 4.17
124 125 9.220767 GAACATAGAAGACTTTCTTTATGTGGT 57.779 33.333 16.15 6.73 40.79 4.16
125 126 8.553459 ACATAGAAGACTTTCTTTATGTGGTG 57.447 34.615 15.40 0.00 40.79 4.17
126 127 5.948992 AGAAGACTTTCTTTATGTGGTGC 57.051 39.130 0.00 0.00 40.79 5.01
127 128 5.625150 AGAAGACTTTCTTTATGTGGTGCT 58.375 37.500 0.00 0.00 40.79 4.40
128 129 5.703130 AGAAGACTTTCTTTATGTGGTGCTC 59.297 40.000 0.00 0.00 40.79 4.26
129 130 5.234466 AGACTTTCTTTATGTGGTGCTCT 57.766 39.130 0.00 0.00 0.00 4.09
130 131 5.625150 AGACTTTCTTTATGTGGTGCTCTT 58.375 37.500 0.00 0.00 0.00 2.85
131 132 6.064717 AGACTTTCTTTATGTGGTGCTCTTT 58.935 36.000 0.00 0.00 0.00 2.52
132 133 6.016777 AGACTTTCTTTATGTGGTGCTCTTTG 60.017 38.462 0.00 0.00 0.00 2.77
133 134 5.827797 ACTTTCTTTATGTGGTGCTCTTTGA 59.172 36.000 0.00 0.00 0.00 2.69
134 135 5.947228 TTCTTTATGTGGTGCTCTTTGAG 57.053 39.130 0.00 0.00 0.00 3.02
135 136 4.973168 TCTTTATGTGGTGCTCTTTGAGT 58.027 39.130 0.00 0.00 31.39 3.41
136 137 6.109156 TCTTTATGTGGTGCTCTTTGAGTA 57.891 37.500 0.00 0.00 31.39 2.59
137 138 5.932303 TCTTTATGTGGTGCTCTTTGAGTAC 59.068 40.000 7.16 7.16 42.91 2.73
138 139 5.483685 TTATGTGGTGCTCTTTGAGTACT 57.516 39.130 13.65 0.00 43.13 2.73
139 140 6.599356 TTATGTGGTGCTCTTTGAGTACTA 57.401 37.500 13.65 6.74 43.13 1.82
140 141 4.948341 TGTGGTGCTCTTTGAGTACTAA 57.052 40.909 13.65 0.00 43.13 2.24
141 142 5.284861 TGTGGTGCTCTTTGAGTACTAAA 57.715 39.130 13.65 0.00 43.13 1.85
142 143 5.865085 TGTGGTGCTCTTTGAGTACTAAAT 58.135 37.500 13.65 0.00 43.13 1.40
143 144 6.296026 TGTGGTGCTCTTTGAGTACTAAATT 58.704 36.000 13.65 0.00 43.13 1.82
144 145 6.770785 TGTGGTGCTCTTTGAGTACTAAATTT 59.229 34.615 13.65 0.00 43.13 1.82
145 146 7.284489 TGTGGTGCTCTTTGAGTACTAAATTTT 59.716 33.333 13.65 0.00 43.13 1.82
146 147 7.591426 GTGGTGCTCTTTGAGTACTAAATTTTG 59.409 37.037 13.65 0.00 43.13 2.44
147 148 7.500892 TGGTGCTCTTTGAGTACTAAATTTTGA 59.499 33.333 13.65 0.00 43.13 2.69
148 149 8.349983 GGTGCTCTTTGAGTACTAAATTTTGAA 58.650 33.333 13.65 0.00 43.13 2.69
149 150 9.899226 GTGCTCTTTGAGTACTAAATTTTGAAT 57.101 29.630 6.63 0.00 41.01 2.57
170 171 9.643693 TTGAATTCTGAAAATCTTAGATTTGGC 57.356 29.630 19.35 14.85 0.00 4.52
171 172 8.253113 TGAATTCTGAAAATCTTAGATTTGGCC 58.747 33.333 19.35 12.53 0.00 5.36
172 173 7.968014 ATTCTGAAAATCTTAGATTTGGCCT 57.032 32.000 19.35 5.27 0.00 5.19
173 174 7.781324 TTCTGAAAATCTTAGATTTGGCCTT 57.219 32.000 19.35 4.92 0.00 4.35
174 175 7.396540 TCTGAAAATCTTAGATTTGGCCTTC 57.603 36.000 19.35 13.32 0.00 3.46
175 176 6.378280 TCTGAAAATCTTAGATTTGGCCTTCC 59.622 38.462 19.35 5.68 0.00 3.46
176 177 5.125417 TGAAAATCTTAGATTTGGCCTTCCG 59.875 40.000 19.35 0.00 34.14 4.30
177 178 2.710096 TCTTAGATTTGGCCTTCCGG 57.290 50.000 3.32 0.00 34.14 5.14
178 179 1.913419 TCTTAGATTTGGCCTTCCGGT 59.087 47.619 3.32 0.00 34.14 5.28
179 180 2.307686 TCTTAGATTTGGCCTTCCGGTT 59.692 45.455 3.32 0.00 34.14 4.44
180 181 2.891191 TAGATTTGGCCTTCCGGTTT 57.109 45.000 3.32 0.00 34.14 3.27
181 182 2.891191 AGATTTGGCCTTCCGGTTTA 57.109 45.000 3.32 0.00 34.14 2.01
182 183 2.443416 AGATTTGGCCTTCCGGTTTAC 58.557 47.619 3.32 0.00 34.14 2.01
183 184 2.164338 GATTTGGCCTTCCGGTTTACA 58.836 47.619 3.32 0.00 34.14 2.41
184 185 1.320507 TTTGGCCTTCCGGTTTACAC 58.679 50.000 3.32 0.00 34.14 2.90
185 186 0.475044 TTGGCCTTCCGGTTTACACT 59.525 50.000 3.32 0.00 34.14 3.55
186 187 0.035739 TGGCCTTCCGGTTTACACTC 59.964 55.000 3.32 0.00 34.14 3.51
187 188 0.675837 GGCCTTCCGGTTTACACTCC 60.676 60.000 0.00 0.00 0.00 3.85
188 189 0.323957 GCCTTCCGGTTTACACTCCT 59.676 55.000 0.00 0.00 0.00 3.69
189 190 1.271217 GCCTTCCGGTTTACACTCCTT 60.271 52.381 0.00 0.00 0.00 3.36
190 191 2.423577 CCTTCCGGTTTACACTCCTTG 58.576 52.381 0.00 0.00 0.00 3.61
191 192 1.804748 CTTCCGGTTTACACTCCTTGC 59.195 52.381 0.00 0.00 0.00 4.01
192 193 0.320073 TCCGGTTTACACTCCTTGCG 60.320 55.000 0.00 0.00 0.00 4.85
193 194 1.296056 CCGGTTTACACTCCTTGCGG 61.296 60.000 0.00 0.00 0.00 5.69
194 195 0.320073 CGGTTTACACTCCTTGCGGA 60.320 55.000 0.00 0.00 37.82 5.54
195 196 1.874739 CGGTTTACACTCCTTGCGGAA 60.875 52.381 0.00 0.00 39.29 4.30
196 197 1.804748 GGTTTACACTCCTTGCGGAAG 59.195 52.381 10.08 10.08 39.29 3.46
210 211 2.189833 GGAAGGCATTTTCCGGACC 58.810 57.895 1.83 0.51 37.48 4.46
211 212 0.323451 GGAAGGCATTTTCCGGACCT 60.323 55.000 1.83 3.63 37.48 3.85
212 213 1.545841 GAAGGCATTTTCCGGACCTT 58.454 50.000 20.19 20.19 43.33 3.50
213 214 2.619590 GGAAGGCATTTTCCGGACCTTA 60.620 50.000 20.12 0.00 40.77 2.69
214 215 3.288092 GAAGGCATTTTCCGGACCTTAT 58.712 45.455 20.12 3.01 40.77 1.73
215 216 2.932261 AGGCATTTTCCGGACCTTATC 58.068 47.619 1.83 0.00 0.00 1.75
216 217 1.602377 GGCATTTTCCGGACCTTATCG 59.398 52.381 1.83 0.00 0.00 2.92
217 218 2.557317 GCATTTTCCGGACCTTATCGA 58.443 47.619 1.83 0.00 0.00 3.59
218 219 2.544267 GCATTTTCCGGACCTTATCGAG 59.456 50.000 1.83 0.00 0.00 4.04
219 220 3.793559 CATTTTCCGGACCTTATCGAGT 58.206 45.455 1.83 0.00 0.00 4.18
220 221 3.515330 TTTTCCGGACCTTATCGAGTC 57.485 47.619 1.83 0.00 0.00 3.36
245 246 5.782893 TTTTTGATGAAAACCGGTGATCT 57.217 34.783 8.52 0.00 32.44 2.75
246 247 6.885952 TTTTTGATGAAAACCGGTGATCTA 57.114 33.333 8.52 2.03 32.44 1.98
247 248 6.885952 TTTTGATGAAAACCGGTGATCTAA 57.114 33.333 8.52 8.25 0.00 2.10
248 249 7.461182 TTTTGATGAAAACCGGTGATCTAAT 57.539 32.000 8.52 0.00 0.00 1.73
249 250 8.568676 TTTTGATGAAAACCGGTGATCTAATA 57.431 30.769 8.52 0.00 0.00 0.98
250 251 7.548196 TTGATGAAAACCGGTGATCTAATAC 57.452 36.000 8.52 2.36 0.00 1.89
251 252 6.884832 TGATGAAAACCGGTGATCTAATACT 58.115 36.000 8.52 0.00 0.00 2.12
252 253 8.014070 TGATGAAAACCGGTGATCTAATACTA 57.986 34.615 8.52 0.00 0.00 1.82
253 254 8.647796 TGATGAAAACCGGTGATCTAATACTAT 58.352 33.333 8.52 0.00 0.00 2.12
254 255 9.490379 GATGAAAACCGGTGATCTAATACTATT 57.510 33.333 8.52 0.00 0.00 1.73
255 256 9.847224 ATGAAAACCGGTGATCTAATACTATTT 57.153 29.630 8.52 0.00 0.00 1.40
256 257 9.321562 TGAAAACCGGTGATCTAATACTATTTC 57.678 33.333 8.52 10.18 0.00 2.17
257 258 8.672823 AAAACCGGTGATCTAATACTATTTCC 57.327 34.615 8.52 0.00 0.00 3.13
258 259 7.613551 AACCGGTGATCTAATACTATTTCCT 57.386 36.000 8.52 0.00 0.00 3.36
259 260 7.229581 ACCGGTGATCTAATACTATTTCCTC 57.770 40.000 6.12 0.00 0.00 3.71
260 261 6.072064 ACCGGTGATCTAATACTATTTCCTCG 60.072 42.308 6.12 0.00 0.00 4.63
261 262 5.800941 CGGTGATCTAATACTATTTCCTCGC 59.199 44.000 0.00 0.00 0.00 5.03
262 263 6.349445 CGGTGATCTAATACTATTTCCTCGCT 60.349 42.308 0.00 0.00 0.00 4.93
263 264 6.809196 GGTGATCTAATACTATTTCCTCGCTG 59.191 42.308 0.00 0.00 0.00 5.18
264 265 7.309255 GGTGATCTAATACTATTTCCTCGCTGA 60.309 40.741 0.00 0.00 0.00 4.26
265 266 8.082852 GTGATCTAATACTATTTCCTCGCTGAA 58.917 37.037 0.00 0.00 0.00 3.02
266 267 8.300286 TGATCTAATACTATTTCCTCGCTGAAG 58.700 37.037 0.00 0.00 0.00 3.02
267 268 7.584122 TCTAATACTATTTCCTCGCTGAAGT 57.416 36.000 0.00 0.00 0.00 3.01
268 269 7.649973 TCTAATACTATTTCCTCGCTGAAGTC 58.350 38.462 0.00 0.00 0.00 3.01
269 270 5.854010 ATACTATTTCCTCGCTGAAGTCA 57.146 39.130 0.00 0.00 0.00 3.41
270 271 4.744795 ACTATTTCCTCGCTGAAGTCAT 57.255 40.909 0.00 0.00 0.00 3.06
271 272 5.091261 ACTATTTCCTCGCTGAAGTCATT 57.909 39.130 0.00 0.00 0.00 2.57
272 273 6.222038 ACTATTTCCTCGCTGAAGTCATTA 57.778 37.500 0.00 0.00 0.00 1.90
273 274 6.043411 ACTATTTCCTCGCTGAAGTCATTAC 58.957 40.000 0.00 0.00 0.00 1.89
274 275 4.537135 TTTCCTCGCTGAAGTCATTACT 57.463 40.909 0.00 0.00 37.65 2.24
275 276 5.654603 TTTCCTCGCTGAAGTCATTACTA 57.345 39.130 0.00 0.00 33.75 1.82
276 277 5.854010 TTCCTCGCTGAAGTCATTACTAT 57.146 39.130 0.00 0.00 33.75 2.12
277 278 5.440234 TCCTCGCTGAAGTCATTACTATC 57.560 43.478 0.00 0.00 33.75 2.08
278 279 4.023963 TCCTCGCTGAAGTCATTACTATCG 60.024 45.833 0.00 0.00 33.75 2.92
279 280 4.222886 CTCGCTGAAGTCATTACTATCGG 58.777 47.826 0.00 0.00 33.75 4.18
280 281 3.630769 TCGCTGAAGTCATTACTATCGGT 59.369 43.478 0.00 0.00 33.75 4.69
281 282 3.731216 CGCTGAAGTCATTACTATCGGTG 59.269 47.826 0.00 0.00 33.75 4.94
282 283 4.497507 CGCTGAAGTCATTACTATCGGTGA 60.498 45.833 6.06 0.00 34.74 4.02
283 284 5.348986 GCTGAAGTCATTACTATCGGTGAA 58.651 41.667 0.00 0.00 33.75 3.18
284 285 5.232414 GCTGAAGTCATTACTATCGGTGAAC 59.768 44.000 0.00 0.00 33.75 3.18
285 286 5.657474 TGAAGTCATTACTATCGGTGAACC 58.343 41.667 0.00 0.00 33.75 3.62
286 287 5.421056 TGAAGTCATTACTATCGGTGAACCT 59.579 40.000 0.00 0.00 33.75 3.50
287 288 5.934402 AGTCATTACTATCGGTGAACCTT 57.066 39.130 0.00 0.00 32.84 3.50
288 289 5.661458 AGTCATTACTATCGGTGAACCTTG 58.339 41.667 0.00 0.00 32.84 3.61
289 290 5.187186 AGTCATTACTATCGGTGAACCTTGT 59.813 40.000 0.00 0.00 32.84 3.16
290 291 5.519206 GTCATTACTATCGGTGAACCTTGTC 59.481 44.000 0.00 0.00 0.00 3.18
291 292 5.186215 TCATTACTATCGGTGAACCTTGTCA 59.814 40.000 0.00 0.00 0.00 3.58
292 293 5.471556 TTACTATCGGTGAACCTTGTCAA 57.528 39.130 0.00 0.00 0.00 3.18
293 294 3.660865 ACTATCGGTGAACCTTGTCAAC 58.339 45.455 0.00 0.00 31.46 3.18
294 295 2.631160 ATCGGTGAACCTTGTCAACA 57.369 45.000 0.00 0.00 34.71 3.33
295 296 2.404923 TCGGTGAACCTTGTCAACAA 57.595 45.000 0.00 0.00 34.71 2.83
296 297 2.011222 TCGGTGAACCTTGTCAACAAC 58.989 47.619 0.00 0.00 34.71 3.32
297 298 2.014128 CGGTGAACCTTGTCAACAACT 58.986 47.619 0.00 0.00 34.71 3.16
298 299 3.118702 TCGGTGAACCTTGTCAACAACTA 60.119 43.478 0.00 0.00 34.71 2.24
299 300 3.813166 CGGTGAACCTTGTCAACAACTAT 59.187 43.478 0.00 0.00 34.71 2.12
300 301 4.319477 CGGTGAACCTTGTCAACAACTATG 60.319 45.833 0.00 0.00 34.71 2.23
301 302 4.023193 GGTGAACCTTGTCAACAACTATGG 60.023 45.833 0.00 0.00 35.17 2.74
302 303 4.578928 GTGAACCTTGTCAACAACTATGGT 59.421 41.667 0.14 0.14 0.00 3.55
303 304 5.067283 GTGAACCTTGTCAACAACTATGGTT 59.933 40.000 13.86 13.86 38.98 3.67
304 305 6.261381 GTGAACCTTGTCAACAACTATGGTTA 59.739 38.462 13.92 4.67 36.78 2.85
305 306 6.829298 TGAACCTTGTCAACAACTATGGTTAA 59.171 34.615 13.92 7.23 36.78 2.01
306 307 7.339721 TGAACCTTGTCAACAACTATGGTTAAA 59.660 33.333 13.92 6.47 36.78 1.52
307 308 7.272037 ACCTTGTCAACAACTATGGTTAAAG 57.728 36.000 0.00 0.00 33.88 1.85
308 309 6.831868 ACCTTGTCAACAACTATGGTTAAAGT 59.168 34.615 0.00 0.00 33.88 2.66
309 310 7.340999 ACCTTGTCAACAACTATGGTTAAAGTT 59.659 33.333 0.00 0.00 36.38 2.66
324 325 9.612066 ATGGTTAAAGTTGATTTGTTGATTTGT 57.388 25.926 0.00 0.00 32.01 2.83
330 331 9.598517 AAAGTTGATTTGTTGATTTGTATGTGT 57.401 25.926 0.00 0.00 0.00 3.72
332 333 9.897744 AGTTGATTTGTTGATTTGTATGTGTAG 57.102 29.630 0.00 0.00 0.00 2.74
333 334 9.677567 GTTGATTTGTTGATTTGTATGTGTAGT 57.322 29.630 0.00 0.00 0.00 2.73
335 336 9.891828 TGATTTGTTGATTTGTATGTGTAGTTC 57.108 29.630 0.00 0.00 0.00 3.01
336 337 9.891828 GATTTGTTGATTTGTATGTGTAGTTCA 57.108 29.630 0.00 0.00 0.00 3.18
340 341 9.676195 TGTTGATTTGTATGTGTAGTTCATTTG 57.324 29.630 0.00 0.00 0.00 2.32
341 342 9.677567 GTTGATTTGTATGTGTAGTTCATTTGT 57.322 29.630 0.00 0.00 0.00 2.83
346 347 9.508642 TTTGTATGTGTAGTTCATTTGTATCCA 57.491 29.630 0.00 0.00 0.00 3.41
347 348 9.679661 TTGTATGTGTAGTTCATTTGTATCCAT 57.320 29.630 0.00 0.00 0.00 3.41
352 353 9.378551 TGTGTAGTTCATTTGTATCCATAGAAC 57.621 33.333 0.00 0.00 35.40 3.01
353 354 8.540492 GTGTAGTTCATTTGTATCCATAGAACG 58.460 37.037 0.00 0.00 38.97 3.95
354 355 8.471609 TGTAGTTCATTTGTATCCATAGAACGA 58.528 33.333 0.00 0.00 38.97 3.85
355 356 8.969267 GTAGTTCATTTGTATCCATAGAACGAG 58.031 37.037 0.00 0.00 38.97 4.18
356 357 7.782049 AGTTCATTTGTATCCATAGAACGAGA 58.218 34.615 0.00 0.00 38.97 4.04
357 358 8.258007 AGTTCATTTGTATCCATAGAACGAGAA 58.742 33.333 0.00 0.00 38.97 2.87
358 359 9.046296 GTTCATTTGTATCCATAGAACGAGAAT 57.954 33.333 0.00 0.00 0.00 2.40
359 360 8.593492 TCATTTGTATCCATAGAACGAGAATG 57.407 34.615 0.00 0.00 0.00 2.67
360 361 6.844696 TTTGTATCCATAGAACGAGAATGC 57.155 37.500 0.00 0.00 0.00 3.56
361 362 4.546570 TGTATCCATAGAACGAGAATGCG 58.453 43.478 0.00 0.00 37.29 4.73
362 363 4.277423 TGTATCCATAGAACGAGAATGCGA 59.723 41.667 0.00 0.00 34.83 5.10
363 364 3.079960 TCCATAGAACGAGAATGCGAC 57.920 47.619 0.00 0.00 34.83 5.19
364 365 2.425668 TCCATAGAACGAGAATGCGACA 59.574 45.455 0.00 0.00 34.83 4.35
365 366 3.068165 TCCATAGAACGAGAATGCGACAT 59.932 43.478 0.00 0.00 34.83 3.06
366 367 3.804325 CCATAGAACGAGAATGCGACATT 59.196 43.478 5.01 5.01 34.83 2.71
367 368 4.084849 CCATAGAACGAGAATGCGACATTC 60.085 45.833 18.79 18.79 34.83 2.67
368 369 2.271800 AGAACGAGAATGCGACATTCC 58.728 47.619 21.22 14.72 34.83 3.01
369 370 0.999406 AACGAGAATGCGACATTCCG 59.001 50.000 23.86 23.86 34.83 4.30
370 371 0.172578 ACGAGAATGCGACATTCCGA 59.827 50.000 27.70 0.00 34.83 4.55
371 372 1.277326 CGAGAATGCGACATTCCGAA 58.723 50.000 21.22 0.00 0.00 4.30
372 373 1.658596 CGAGAATGCGACATTCCGAAA 59.341 47.619 21.22 0.00 0.00 3.46
373 374 2.093625 CGAGAATGCGACATTCCGAAAA 59.906 45.455 21.22 0.00 0.00 2.29
374 375 3.424302 CGAGAATGCGACATTCCGAAAAA 60.424 43.478 21.22 0.00 0.00 1.94
394 395 6.432403 AAAAATAAAGGCCATTTGTGGAGA 57.568 33.333 5.01 0.00 32.01 3.71
395 396 6.432403 AAAATAAAGGCCATTTGTGGAGAA 57.568 33.333 5.01 0.00 32.01 2.87
396 397 6.625532 AAATAAAGGCCATTTGTGGAGAAT 57.374 33.333 5.01 0.00 32.01 2.40
397 398 3.967332 AAAGGCCATTTGTGGAGAATG 57.033 42.857 5.01 0.00 34.93 2.67
398 399 2.610438 AGGCCATTTGTGGAGAATGT 57.390 45.000 5.01 0.00 33.65 2.71
399 400 2.893424 AGGCCATTTGTGGAGAATGTT 58.107 42.857 5.01 0.00 33.65 2.71
400 401 2.564062 AGGCCATTTGTGGAGAATGTTG 59.436 45.455 5.01 0.00 33.65 3.33
401 402 2.299867 GGCCATTTGTGGAGAATGTTGT 59.700 45.455 0.00 0.00 33.65 3.32
402 403 3.244181 GGCCATTTGTGGAGAATGTTGTT 60.244 43.478 0.00 0.00 33.65 2.83
403 404 4.379652 GCCATTTGTGGAGAATGTTGTTT 58.620 39.130 0.00 0.00 33.65 2.83
404 405 4.815846 GCCATTTGTGGAGAATGTTGTTTT 59.184 37.500 0.00 0.00 33.65 2.43
405 406 5.277442 GCCATTTGTGGAGAATGTTGTTTTG 60.277 40.000 0.00 0.00 33.65 2.44
406 407 5.236911 CCATTTGTGGAGAATGTTGTTTTGG 59.763 40.000 0.00 0.00 33.65 3.28
407 408 5.413309 TTTGTGGAGAATGTTGTTTTGGT 57.587 34.783 0.00 0.00 0.00 3.67
408 409 4.383850 TGTGGAGAATGTTGTTTTGGTG 57.616 40.909 0.00 0.00 0.00 4.17
409 410 4.019858 TGTGGAGAATGTTGTTTTGGTGA 58.980 39.130 0.00 0.00 0.00 4.02
410 411 4.142271 TGTGGAGAATGTTGTTTTGGTGAC 60.142 41.667 0.00 0.00 0.00 3.67
411 412 3.383185 TGGAGAATGTTGTTTTGGTGACC 59.617 43.478 0.00 0.00 0.00 4.02
412 413 3.550030 GGAGAATGTTGTTTTGGTGACCG 60.550 47.826 0.00 0.00 0.00 4.79
421 422 0.249868 TTTGGTGACCGAGCTCACTG 60.250 55.000 15.40 3.86 40.50 3.66
554 557 5.041191 AGGATGAAATACCTCGAAATGCT 57.959 39.130 0.00 0.00 0.00 3.79
559 562 8.035394 GGATGAAATACCTCGAAATGCTATCTA 58.965 37.037 0.00 0.00 0.00 1.98
586 589 4.961438 AAAAGACAAATTCATGGCCTGT 57.039 36.364 3.32 0.00 0.00 4.00
588 591 3.159213 AGACAAATTCATGGCCTGTGA 57.841 42.857 3.32 5.72 0.00 3.58
590 593 2.165030 GACAAATTCATGGCCTGTGAGG 59.835 50.000 3.32 2.85 38.80 3.86
591 594 2.225091 ACAAATTCATGGCCTGTGAGGA 60.225 45.455 3.32 0.00 37.67 3.71
592 595 3.028850 CAAATTCATGGCCTGTGAGGAT 58.971 45.455 3.32 0.00 37.67 3.24
595 598 4.524802 ATTCATGGCCTGTGAGGATAAA 57.475 40.909 3.32 0.00 37.67 1.40
596 599 4.524802 TTCATGGCCTGTGAGGATAAAT 57.475 40.909 3.32 0.00 37.67 1.40
597 600 5.645056 TTCATGGCCTGTGAGGATAAATA 57.355 39.130 3.32 0.00 37.67 1.40
598 601 5.233083 TCATGGCCTGTGAGGATAAATAG 57.767 43.478 3.32 0.00 37.67 1.73
601 604 5.546621 TGGCCTGTGAGGATAAATAGTAC 57.453 43.478 3.32 0.00 37.67 2.73
607 610 8.754080 GCCTGTGAGGATAAATAGTACTATCAT 58.246 37.037 15.72 11.79 37.67 2.45
622 625 7.493367 AGTACTATCATGTGTTAGAAAGCCTC 58.507 38.462 0.00 0.00 0.00 4.70
697 700 4.087510 CACATGTGTGTTATGCCTTCAG 57.912 45.455 18.03 0.00 40.96 3.02
788 791 0.918983 ATTTGGAGGCCTCGATGGAA 59.081 50.000 26.36 14.26 38.35 3.53
790 793 2.110006 GGAGGCCTCGATGGAAGC 59.890 66.667 26.36 6.14 38.35 3.86
817 820 3.324993 TCCAAAAGCAATTTTCGCCATC 58.675 40.909 0.00 0.00 0.00 3.51
824 827 2.867429 CAATTTTCGCCATCTGTGTCC 58.133 47.619 0.00 0.00 0.00 4.02
946 970 1.772063 GATACGTGTCAATGGCGGCC 61.772 60.000 13.32 13.32 0.00 6.13
1119 1143 4.758251 TCCATGGTCGTGCAGGCG 62.758 66.667 12.58 0.00 0.00 5.52
1182 1206 2.566529 CAGCACGTGGAGCTCGTA 59.433 61.111 18.88 0.00 41.14 3.43
1188 1212 3.450115 GTGGAGCTCGTAGGCGGT 61.450 66.667 7.83 0.00 38.89 5.68
1201 1225 3.386237 GCGGTCTGCTCAGGGAGT 61.386 66.667 0.00 0.00 41.73 3.85
1329 1353 4.826404 TACCTCCGCCGCCTGCTA 62.826 66.667 0.00 0.00 38.05 3.49
1616 1649 4.829968 AGTGATCTGTTCAAGTGATCCTG 58.170 43.478 0.00 0.00 35.70 3.86
1657 1690 1.667236 TATGCCTGAATTGGAGTGCG 58.333 50.000 0.00 0.00 0.00 5.34
1679 1721 1.305219 TGCAATTCGGTACTGGCAGC 61.305 55.000 15.89 0.00 0.00 5.25
1680 1722 1.993369 GCAATTCGGTACTGGCAGCC 61.993 60.000 15.89 3.66 0.00 4.85
1730 1853 7.849322 TTCTAATTTTGTTTTTAGGGCTCCT 57.151 32.000 0.00 0.00 37.71 3.69
1769 1892 6.529829 TGCTGGTTGATTTTGCGTTAATAATC 59.470 34.615 0.00 0.00 0.00 1.75
1884 2032 6.926272 AGTTTATCACTCAGAGAACAAGTCAC 59.074 38.462 3.79 0.00 31.96 3.67
1891 2041 3.869246 TCAGAGAACAAGTCACCGTTTTC 59.131 43.478 0.00 0.00 0.00 2.29
1893 2043 5.047847 CAGAGAACAAGTCACCGTTTTCTA 58.952 41.667 1.63 0.00 35.16 2.10
1910 2060 9.805966 CCGTTTTCTAAAATTTAAATCCAAAGC 57.194 29.630 0.10 0.00 0.00 3.51
1946 2124 6.642707 TTGACCAAGGTTAACCACTTATTG 57.357 37.500 26.26 19.29 38.89 1.90
1978 2156 2.880268 TGACAAGTGCAAACCAGATGAG 59.120 45.455 0.00 0.00 0.00 2.90
2253 2475 1.323534 GTCAAGTTATGTAGCCGTGCG 59.676 52.381 0.00 0.00 0.00 5.34
2354 4120 4.397417 AGAGCTTTGGAATTCTCCGAAATG 59.603 41.667 5.23 0.00 43.43 2.32
2465 4231 6.759497 AGCATGAACTTAGGTATGGAAAAC 57.241 37.500 0.00 0.00 0.00 2.43
2484 4250 7.660208 TGGAAAACTGGAAATTAGTAGAGTGAC 59.340 37.037 0.00 0.00 0.00 3.67
2587 4353 8.205512 TGCTCATGTTTTTGGATATATTGCAAT 58.794 29.630 17.56 17.56 35.41 3.56
2652 4548 6.403333 AGTTATACACGTGCATACTTGTTG 57.597 37.500 17.22 0.00 39.62 3.33
2831 4945 8.828688 TCAATATCTTGCATGACTTCATCTAG 57.171 34.615 4.14 0.00 33.61 2.43
3012 5126 4.379813 CCATGAATCAGGAAAAGTTGACCG 60.380 45.833 0.00 0.00 0.00 4.79
3063 5177 0.037326 CTCGCTGAGCTTTGTACCCA 60.037 55.000 1.78 0.00 0.00 4.51
3187 5301 8.820933 GGATTCGGTACAGTTTATAAGGTAAAC 58.179 37.037 0.00 3.19 37.60 2.01
3202 5316 5.129368 AGGTAAACATGTGCCAATATCCT 57.871 39.130 0.00 0.00 0.00 3.24
3230 5344 5.217978 ACTAACAAAGTGAATACCCGTCA 57.782 39.130 0.00 0.00 36.93 4.35
3241 5355 4.019681 TGAATACCCGTCATCCTTGTCTTT 60.020 41.667 0.00 0.00 0.00 2.52
3561 5678 5.514500 AGCACACCTCCTTTAATTCCTAA 57.486 39.130 0.00 0.00 0.00 2.69
3589 5708 9.661563 AAATGTGCATGAATTCAAAACATCTAT 57.338 25.926 23.36 15.11 31.36 1.98
3819 5942 2.509548 ACCTGCATAAAGGCTCCATGTA 59.490 45.455 9.30 4.99 41.46 2.29
4164 6883 7.390718 GGTGATTATTAGTGGCCGAAAGAATAT 59.609 37.037 0.00 0.00 0.00 1.28
4225 7138 4.592485 ACGAGAAGTGAGTGAACTGAAT 57.408 40.909 0.00 0.00 0.00 2.57
4230 7143 7.918033 ACGAGAAGTGAGTGAACTGAATATATG 59.082 37.037 0.00 0.00 0.00 1.78
4232 7145 9.243637 GAGAAGTGAGTGAACTGAATATATGTC 57.756 37.037 0.00 0.00 0.00 3.06
4365 7390 0.630673 AGGCCTGGCATATGTGGAAA 59.369 50.000 22.05 0.00 0.00 3.13
4766 7838 6.079712 AGTGAGGATTATGGGCTTTTTACT 57.920 37.500 0.00 0.00 0.00 2.24
4773 7845 2.949177 TGGGCTTTTTACTGCTCAGA 57.051 45.000 3.60 0.00 34.40 3.27
4882 7980 6.463995 TTTTCCATGGGCTACATTGTAATC 57.536 37.500 13.02 0.00 37.84 1.75
4906 8035 7.081349 TCCAAACGTATGATGTTTCATGTTTC 58.919 34.615 0.00 0.00 42.60 2.78
5037 8179 0.451783 CTTAGCCGGCACATTCAACC 59.548 55.000 31.54 0.00 0.00 3.77
5445 8650 7.020827 TCTGAGGAGTTACAATCCAAGAATT 57.979 36.000 0.00 0.00 39.47 2.17
5621 10364 5.875359 ACTCGGATTCAAAAACCATAGTCTC 59.125 40.000 0.00 0.00 0.00 3.36
5622 10365 5.800296 TCGGATTCAAAAACCATAGTCTCA 58.200 37.500 0.00 0.00 0.00 3.27
5623 10366 5.874810 TCGGATTCAAAAACCATAGTCTCAG 59.125 40.000 0.00 0.00 0.00 3.35
5624 10367 5.874810 CGGATTCAAAAACCATAGTCTCAGA 59.125 40.000 0.00 0.00 0.00 3.27
5625 10368 6.371548 CGGATTCAAAAACCATAGTCTCAGAA 59.628 38.462 0.00 0.00 0.00 3.02
5637 10380 2.879646 AGTCTCAGAACGACTTCGACTT 59.120 45.455 5.47 0.00 38.52 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.830408 CCAGCCTCTCCCTACCTCG 60.830 68.421 0.00 0.00 0.00 4.63
13 14 0.469144 CTCCAGCCTCTCCCTACCTC 60.469 65.000 0.00 0.00 0.00 3.85
16 17 0.553819 TCTCTCCAGCCTCTCCCTAC 59.446 60.000 0.00 0.00 0.00 3.18
17 18 0.553819 GTCTCTCCAGCCTCTCCCTA 59.446 60.000 0.00 0.00 0.00 3.53
18 19 1.309688 GTCTCTCCAGCCTCTCCCT 59.690 63.158 0.00 0.00 0.00 4.20
19 20 1.760480 GGTCTCTCCAGCCTCTCCC 60.760 68.421 0.00 0.00 35.97 4.30
20 21 1.760480 GGGTCTCTCCAGCCTCTCC 60.760 68.421 0.00 0.00 38.11 3.71
21 22 0.553819 TAGGGTCTCTCCAGCCTCTC 59.446 60.000 0.00 0.00 43.53 3.20
22 23 1.240527 ATAGGGTCTCTCCAGCCTCT 58.759 55.000 0.00 0.00 43.53 3.69
23 24 1.967779 GAATAGGGTCTCTCCAGCCTC 59.032 57.143 0.00 0.00 43.53 4.70
24 25 1.413808 GGAATAGGGTCTCTCCAGCCT 60.414 57.143 0.00 0.00 46.40 4.58
25 26 1.052617 GGAATAGGGTCTCTCCAGCC 58.947 60.000 0.00 0.00 38.11 4.85
26 27 1.794714 TGGAATAGGGTCTCTCCAGC 58.205 55.000 0.00 0.00 38.11 4.85
27 28 4.844349 TTTTGGAATAGGGTCTCTCCAG 57.156 45.455 0.00 0.00 39.11 3.86
28 29 4.788075 TCATTTTGGAATAGGGTCTCTCCA 59.212 41.667 0.00 0.00 36.16 3.86
29 30 5.104318 ACTCATTTTGGAATAGGGTCTCTCC 60.104 44.000 0.00 0.00 0.00 3.71
30 31 5.819901 CACTCATTTTGGAATAGGGTCTCTC 59.180 44.000 0.00 0.00 0.00 3.20
31 32 5.488919 TCACTCATTTTGGAATAGGGTCTCT 59.511 40.000 0.00 0.00 0.00 3.10
32 33 5.745227 TCACTCATTTTGGAATAGGGTCTC 58.255 41.667 0.00 0.00 0.00 3.36
33 34 5.779241 TCACTCATTTTGGAATAGGGTCT 57.221 39.130 0.00 0.00 0.00 3.85
34 35 5.946377 ACTTCACTCATTTTGGAATAGGGTC 59.054 40.000 0.00 0.00 0.00 4.46
35 36 5.892348 ACTTCACTCATTTTGGAATAGGGT 58.108 37.500 0.00 0.00 0.00 4.34
36 37 6.624423 CAACTTCACTCATTTTGGAATAGGG 58.376 40.000 0.00 0.00 0.00 3.53
37 38 6.071728 AGCAACTTCACTCATTTTGGAATAGG 60.072 38.462 0.00 0.00 0.00 2.57
38 39 6.917533 AGCAACTTCACTCATTTTGGAATAG 58.082 36.000 0.00 0.00 0.00 1.73
39 40 6.899393 AGCAACTTCACTCATTTTGGAATA 57.101 33.333 0.00 0.00 0.00 1.75
40 41 5.796424 AGCAACTTCACTCATTTTGGAAT 57.204 34.783 0.00 0.00 0.00 3.01
41 42 5.451798 GGAAGCAACTTCACTCATTTTGGAA 60.452 40.000 9.38 0.00 41.77 3.53
42 43 4.037923 GGAAGCAACTTCACTCATTTTGGA 59.962 41.667 9.38 0.00 41.77 3.53
43 44 4.202141 TGGAAGCAACTTCACTCATTTTGG 60.202 41.667 9.38 0.00 41.77 3.28
44 45 4.935702 TGGAAGCAACTTCACTCATTTTG 58.064 39.130 9.38 0.00 41.77 2.44
45 46 5.069516 ACATGGAAGCAACTTCACTCATTTT 59.930 36.000 9.38 0.00 41.77 1.82
46 47 4.586001 ACATGGAAGCAACTTCACTCATTT 59.414 37.500 9.38 0.00 41.77 2.32
47 48 4.147321 ACATGGAAGCAACTTCACTCATT 58.853 39.130 9.38 0.00 41.77 2.57
48 49 3.759581 ACATGGAAGCAACTTCACTCAT 58.240 40.909 9.38 1.66 41.77 2.90
49 50 3.213206 ACATGGAAGCAACTTCACTCA 57.787 42.857 9.38 0.00 41.77 3.41
50 51 5.227238 CATACATGGAAGCAACTTCACTC 57.773 43.478 9.38 0.00 41.77 3.51
71 72 9.860650 ACACCATAAAATTATCTAATACTGCCA 57.139 29.630 0.00 0.00 0.00 4.92
85 86 9.520515 AGTCTTCTATGTTCACACCATAAAATT 57.479 29.630 0.00 0.00 0.00 1.82
86 87 9.520515 AAGTCTTCTATGTTCACACCATAAAAT 57.479 29.630 0.00 0.00 0.00 1.82
87 88 8.918202 AAGTCTTCTATGTTCACACCATAAAA 57.082 30.769 0.00 0.00 0.00 1.52
88 89 8.918202 AAAGTCTTCTATGTTCACACCATAAA 57.082 30.769 0.00 0.00 0.00 1.40
89 90 8.375506 AGAAAGTCTTCTATGTTCACACCATAA 58.624 33.333 0.00 0.00 40.26 1.90
90 91 7.907389 AGAAAGTCTTCTATGTTCACACCATA 58.093 34.615 0.00 0.00 40.26 2.74
91 92 6.773638 AGAAAGTCTTCTATGTTCACACCAT 58.226 36.000 0.00 0.00 40.26 3.55
92 93 6.174720 AGAAAGTCTTCTATGTTCACACCA 57.825 37.500 0.00 0.00 40.26 4.17
93 94 7.497925 AAAGAAAGTCTTCTATGTTCACACC 57.502 36.000 0.00 0.00 41.23 4.16
95 96 9.778741 ACATAAAGAAAGTCTTCTATGTTCACA 57.221 29.630 13.85 0.00 41.23 3.58
97 98 9.219603 CCACATAAAGAAAGTCTTCTATGTTCA 57.780 33.333 15.47 0.00 41.23 3.18
98 99 9.220767 ACCACATAAAGAAAGTCTTCTATGTTC 57.779 33.333 15.47 0.00 41.23 3.18
99 100 9.003658 CACCACATAAAGAAAGTCTTCTATGTT 57.996 33.333 15.47 7.04 41.23 2.71
100 101 7.119846 GCACCACATAAAGAAAGTCTTCTATGT 59.880 37.037 13.85 13.85 41.23 2.29
101 102 7.335422 AGCACCACATAAAGAAAGTCTTCTATG 59.665 37.037 13.08 13.08 41.23 2.23
102 103 7.398024 AGCACCACATAAAGAAAGTCTTCTAT 58.602 34.615 0.00 0.00 41.23 1.98
103 104 6.769512 AGCACCACATAAAGAAAGTCTTCTA 58.230 36.000 0.00 0.00 41.23 2.10
104 105 5.625150 AGCACCACATAAAGAAAGTCTTCT 58.375 37.500 0.00 0.00 44.11 2.85
105 106 5.703130 AGAGCACCACATAAAGAAAGTCTTC 59.297 40.000 0.00 0.00 35.27 2.87
106 107 5.625150 AGAGCACCACATAAAGAAAGTCTT 58.375 37.500 0.00 0.00 38.59 3.01
107 108 5.234466 AGAGCACCACATAAAGAAAGTCT 57.766 39.130 0.00 0.00 0.00 3.24
108 109 5.948992 AAGAGCACCACATAAAGAAAGTC 57.051 39.130 0.00 0.00 0.00 3.01
109 110 5.827797 TCAAAGAGCACCACATAAAGAAAGT 59.172 36.000 0.00 0.00 0.00 2.66
110 111 6.016777 ACTCAAAGAGCACCACATAAAGAAAG 60.017 38.462 0.00 0.00 32.04 2.62
111 112 5.827797 ACTCAAAGAGCACCACATAAAGAAA 59.172 36.000 0.00 0.00 32.04 2.52
112 113 5.376625 ACTCAAAGAGCACCACATAAAGAA 58.623 37.500 0.00 0.00 32.04 2.52
113 114 4.973168 ACTCAAAGAGCACCACATAAAGA 58.027 39.130 0.00 0.00 32.04 2.52
114 115 5.934625 AGTACTCAAAGAGCACCACATAAAG 59.065 40.000 0.00 0.00 32.04 1.85
115 116 5.865085 AGTACTCAAAGAGCACCACATAAA 58.135 37.500 0.00 0.00 32.04 1.40
116 117 5.483685 AGTACTCAAAGAGCACCACATAA 57.516 39.130 0.00 0.00 32.04 1.90
117 118 6.599356 TTAGTACTCAAAGAGCACCACATA 57.401 37.500 0.00 0.00 32.04 2.29
118 119 5.483685 TTAGTACTCAAAGAGCACCACAT 57.516 39.130 0.00 0.00 32.04 3.21
119 120 4.948341 TTAGTACTCAAAGAGCACCACA 57.052 40.909 0.00 0.00 32.04 4.17
120 121 6.803154 AATTTAGTACTCAAAGAGCACCAC 57.197 37.500 0.00 0.00 32.04 4.16
121 122 7.500892 TCAAAATTTAGTACTCAAAGAGCACCA 59.499 33.333 0.00 0.00 32.04 4.17
122 123 7.871853 TCAAAATTTAGTACTCAAAGAGCACC 58.128 34.615 0.00 0.00 32.04 5.01
123 124 9.899226 ATTCAAAATTTAGTACTCAAAGAGCAC 57.101 29.630 0.00 0.00 32.04 4.40
144 145 9.643693 GCCAAATCTAAGATTTTCAGAATTCAA 57.356 29.630 8.44 0.00 0.00 2.69
145 146 8.253113 GGCCAAATCTAAGATTTTCAGAATTCA 58.747 33.333 8.44 0.00 0.00 2.57
146 147 8.473219 AGGCCAAATCTAAGATTTTCAGAATTC 58.527 33.333 5.01 0.00 0.00 2.17
147 148 8.371571 AGGCCAAATCTAAGATTTTCAGAATT 57.628 30.769 5.01 0.00 0.00 2.17
148 149 7.968014 AGGCCAAATCTAAGATTTTCAGAAT 57.032 32.000 5.01 0.00 0.00 2.40
149 150 7.093771 GGAAGGCCAAATCTAAGATTTTCAGAA 60.094 37.037 5.01 0.00 0.00 3.02
150 151 6.378280 GGAAGGCCAAATCTAAGATTTTCAGA 59.622 38.462 5.01 0.00 0.00 3.27
151 152 6.567959 GGAAGGCCAAATCTAAGATTTTCAG 58.432 40.000 5.01 0.00 0.00 3.02
152 153 5.125417 CGGAAGGCCAAATCTAAGATTTTCA 59.875 40.000 5.01 0.00 0.00 2.69
153 154 5.582550 CGGAAGGCCAAATCTAAGATTTTC 58.417 41.667 5.01 0.00 0.00 2.29
154 155 5.582689 CGGAAGGCCAAATCTAAGATTTT 57.417 39.130 5.01 0.00 0.00 1.82
171 172 1.804748 GCAAGGAGTGTAAACCGGAAG 59.195 52.381 9.46 0.00 0.00 3.46
172 173 1.874739 CGCAAGGAGTGTAAACCGGAA 60.875 52.381 9.46 0.00 0.00 4.30
173 174 0.320073 CGCAAGGAGTGTAAACCGGA 60.320 55.000 9.46 0.00 0.00 5.14
174 175 2.159181 CGCAAGGAGTGTAAACCGG 58.841 57.895 0.00 0.00 0.00 5.28
192 193 0.323451 AGGTCCGGAAAATGCCTTCC 60.323 55.000 5.23 0.00 41.40 3.46
193 194 1.545841 AAGGTCCGGAAAATGCCTTC 58.454 50.000 15.71 0.00 34.80 3.46
194 195 2.891191 TAAGGTCCGGAAAATGCCTT 57.109 45.000 22.69 22.69 41.76 4.35
195 196 2.745152 CGATAAGGTCCGGAAAATGCCT 60.745 50.000 5.23 4.93 0.00 4.75
196 197 1.602377 CGATAAGGTCCGGAAAATGCC 59.398 52.381 5.23 1.89 0.00 4.40
197 198 2.544267 CTCGATAAGGTCCGGAAAATGC 59.456 50.000 5.23 0.00 0.00 3.56
198 199 3.793559 ACTCGATAAGGTCCGGAAAATG 58.206 45.455 5.23 0.00 0.00 2.32
199 200 3.181468 GGACTCGATAAGGTCCGGAAAAT 60.181 47.826 5.23 0.00 41.82 1.82
200 201 2.167075 GGACTCGATAAGGTCCGGAAAA 59.833 50.000 5.23 0.00 41.82 2.29
201 202 1.753073 GGACTCGATAAGGTCCGGAAA 59.247 52.381 5.23 0.00 41.82 3.13
202 203 1.396653 GGACTCGATAAGGTCCGGAA 58.603 55.000 5.23 0.00 41.82 4.30
203 204 3.106738 GGACTCGATAAGGTCCGGA 57.893 57.895 0.00 0.00 41.82 5.14
223 224 5.782893 AGATCACCGGTTTTCATCAAAAA 57.217 34.783 2.97 0.00 33.17 1.94
224 225 6.885952 TTAGATCACCGGTTTTCATCAAAA 57.114 33.333 2.97 0.89 0.00 2.44
225 226 7.827236 AGTATTAGATCACCGGTTTTCATCAAA 59.173 33.333 2.97 0.00 0.00 2.69
226 227 7.335627 AGTATTAGATCACCGGTTTTCATCAA 58.664 34.615 2.97 1.31 0.00 2.57
227 228 6.884832 AGTATTAGATCACCGGTTTTCATCA 58.115 36.000 2.97 0.00 0.00 3.07
228 229 9.490379 AATAGTATTAGATCACCGGTTTTCATC 57.510 33.333 2.97 4.31 0.00 2.92
229 230 9.847224 AAATAGTATTAGATCACCGGTTTTCAT 57.153 29.630 2.97 0.00 0.00 2.57
230 231 9.321562 GAAATAGTATTAGATCACCGGTTTTCA 57.678 33.333 2.97 0.00 0.00 2.69
231 232 8.771766 GGAAATAGTATTAGATCACCGGTTTTC 58.228 37.037 2.97 7.70 0.00 2.29
232 233 8.491958 AGGAAATAGTATTAGATCACCGGTTTT 58.508 33.333 2.97 0.00 0.00 2.43
233 234 8.030913 AGGAAATAGTATTAGATCACCGGTTT 57.969 34.615 2.97 0.00 0.00 3.27
234 235 7.523380 CGAGGAAATAGTATTAGATCACCGGTT 60.523 40.741 2.97 0.00 0.00 4.44
235 236 6.072064 CGAGGAAATAGTATTAGATCACCGGT 60.072 42.308 0.00 0.00 0.00 5.28
236 237 6.323266 CGAGGAAATAGTATTAGATCACCGG 58.677 44.000 0.00 0.00 0.00 5.28
237 238 5.800941 GCGAGGAAATAGTATTAGATCACCG 59.199 44.000 0.00 0.32 0.00 4.94
238 239 6.809196 CAGCGAGGAAATAGTATTAGATCACC 59.191 42.308 0.00 0.00 0.00 4.02
239 240 7.594714 TCAGCGAGGAAATAGTATTAGATCAC 58.405 38.462 0.00 0.00 0.00 3.06
240 241 7.761038 TCAGCGAGGAAATAGTATTAGATCA 57.239 36.000 0.00 0.00 0.00 2.92
241 242 8.301002 ACTTCAGCGAGGAAATAGTATTAGATC 58.699 37.037 0.00 0.00 0.00 2.75
242 243 8.184304 ACTTCAGCGAGGAAATAGTATTAGAT 57.816 34.615 0.00 0.00 0.00 1.98
243 244 7.284716 TGACTTCAGCGAGGAAATAGTATTAGA 59.715 37.037 0.00 0.00 0.00 2.10
244 245 7.426410 TGACTTCAGCGAGGAAATAGTATTAG 58.574 38.462 0.00 0.00 0.00 1.73
245 246 7.342769 TGACTTCAGCGAGGAAATAGTATTA 57.657 36.000 0.00 0.00 0.00 0.98
246 247 6.222038 TGACTTCAGCGAGGAAATAGTATT 57.778 37.500 0.00 0.00 0.00 1.89
247 248 5.854010 TGACTTCAGCGAGGAAATAGTAT 57.146 39.130 0.00 0.00 0.00 2.12
248 249 5.854010 ATGACTTCAGCGAGGAAATAGTA 57.146 39.130 0.00 0.00 0.00 1.82
249 250 4.744795 ATGACTTCAGCGAGGAAATAGT 57.255 40.909 0.00 0.00 0.00 2.12
250 251 6.276847 AGTAATGACTTCAGCGAGGAAATAG 58.723 40.000 0.00 0.00 28.61 1.73
251 252 6.222038 AGTAATGACTTCAGCGAGGAAATA 57.778 37.500 0.00 0.00 28.61 1.40
252 253 5.091261 AGTAATGACTTCAGCGAGGAAAT 57.909 39.130 0.00 0.00 28.61 2.17
253 254 4.537135 AGTAATGACTTCAGCGAGGAAA 57.463 40.909 0.00 0.00 28.61 3.13
254 255 5.505819 CGATAGTAATGACTTCAGCGAGGAA 60.506 44.000 0.00 0.00 37.10 3.36
255 256 4.023963 CGATAGTAATGACTTCAGCGAGGA 60.024 45.833 0.00 0.00 37.10 3.71
256 257 4.222886 CGATAGTAATGACTTCAGCGAGG 58.777 47.826 0.00 0.00 37.10 4.63
257 258 4.222886 CCGATAGTAATGACTTCAGCGAG 58.777 47.826 0.00 0.00 37.10 5.03
258 259 3.630769 ACCGATAGTAATGACTTCAGCGA 59.369 43.478 0.00 0.00 37.10 4.93
259 260 3.731216 CACCGATAGTAATGACTTCAGCG 59.269 47.826 0.00 0.00 37.10 5.18
260 261 4.933330 TCACCGATAGTAATGACTTCAGC 58.067 43.478 0.00 0.00 37.10 4.26
261 262 5.749109 GGTTCACCGATAGTAATGACTTCAG 59.251 44.000 0.00 0.00 37.10 3.02
262 263 5.421056 AGGTTCACCGATAGTAATGACTTCA 59.579 40.000 0.00 0.00 42.08 3.02
263 264 5.903810 AGGTTCACCGATAGTAATGACTTC 58.096 41.667 0.00 0.00 42.08 3.01
264 265 5.934402 AGGTTCACCGATAGTAATGACTT 57.066 39.130 0.00 0.00 42.08 3.01
265 266 5.187186 ACAAGGTTCACCGATAGTAATGACT 59.813 40.000 0.00 0.00 42.08 3.41
266 267 5.416947 ACAAGGTTCACCGATAGTAATGAC 58.583 41.667 0.00 0.00 42.08 3.06
267 268 5.186215 TGACAAGGTTCACCGATAGTAATGA 59.814 40.000 0.00 0.00 42.08 2.57
268 269 5.416083 TGACAAGGTTCACCGATAGTAATG 58.584 41.667 0.00 0.00 42.08 1.90
269 270 5.670792 TGACAAGGTTCACCGATAGTAAT 57.329 39.130 0.00 0.00 42.08 1.89
270 271 5.221481 TGTTGACAAGGTTCACCGATAGTAA 60.221 40.000 0.00 0.00 42.08 2.24
271 272 4.281435 TGTTGACAAGGTTCACCGATAGTA 59.719 41.667 0.00 0.00 42.08 1.82
272 273 3.070446 TGTTGACAAGGTTCACCGATAGT 59.930 43.478 0.00 0.00 42.08 2.12
273 274 3.659786 TGTTGACAAGGTTCACCGATAG 58.340 45.455 0.00 0.00 42.08 2.08
274 275 3.755112 TGTTGACAAGGTTCACCGATA 57.245 42.857 0.00 0.00 42.08 2.92
275 276 2.616842 GTTGTTGACAAGGTTCACCGAT 59.383 45.455 0.00 0.00 42.08 4.18
276 277 2.011222 GTTGTTGACAAGGTTCACCGA 58.989 47.619 0.00 0.00 42.08 4.69
277 278 2.014128 AGTTGTTGACAAGGTTCACCG 58.986 47.619 0.00 0.00 42.08 4.94
278 279 4.023193 CCATAGTTGTTGACAAGGTTCACC 60.023 45.833 0.00 0.00 36.39 4.02
279 280 4.578928 ACCATAGTTGTTGACAAGGTTCAC 59.421 41.667 0.00 0.00 36.39 3.18
280 281 4.787551 ACCATAGTTGTTGACAAGGTTCA 58.212 39.130 0.00 0.00 36.39 3.18
281 282 5.767816 AACCATAGTTGTTGACAAGGTTC 57.232 39.130 10.66 0.00 36.53 3.62
282 283 7.340999 ACTTTAACCATAGTTGTTGACAAGGTT 59.659 33.333 17.10 17.10 40.99 3.50
283 284 6.831868 ACTTTAACCATAGTTGTTGACAAGGT 59.168 34.615 0.00 0.00 36.68 3.50
284 285 7.272037 ACTTTAACCATAGTTGTTGACAAGG 57.728 36.000 0.00 0.00 36.68 3.61
285 286 8.560576 CAACTTTAACCATAGTTGTTGACAAG 57.439 34.615 8.87 0.00 43.83 3.16
298 299 9.612066 ACAAATCAACAAATCAACTTTAACCAT 57.388 25.926 0.00 0.00 0.00 3.55
304 305 9.598517 ACACATACAAATCAACAAATCAACTTT 57.401 25.926 0.00 0.00 0.00 2.66
306 307 9.897744 CTACACATACAAATCAACAAATCAACT 57.102 29.630 0.00 0.00 0.00 3.16
307 308 9.677567 ACTACACATACAAATCAACAAATCAAC 57.322 29.630 0.00 0.00 0.00 3.18
309 310 9.891828 GAACTACACATACAAATCAACAAATCA 57.108 29.630 0.00 0.00 0.00 2.57
310 311 9.891828 TGAACTACACATACAAATCAACAAATC 57.108 29.630 0.00 0.00 0.00 2.17
314 315 9.676195 CAAATGAACTACACATACAAATCAACA 57.324 29.630 0.00 0.00 0.00 3.33
315 316 9.677567 ACAAATGAACTACACATACAAATCAAC 57.322 29.630 0.00 0.00 0.00 3.18
340 341 4.617645 GTCGCATTCTCGTTCTATGGATAC 59.382 45.833 0.00 0.00 0.00 2.24
341 342 4.277423 TGTCGCATTCTCGTTCTATGGATA 59.723 41.667 0.00 0.00 0.00 2.59
342 343 3.068165 TGTCGCATTCTCGTTCTATGGAT 59.932 43.478 0.00 0.00 0.00 3.41
343 344 2.425668 TGTCGCATTCTCGTTCTATGGA 59.574 45.455 0.00 0.00 0.00 3.41
344 345 2.809446 TGTCGCATTCTCGTTCTATGG 58.191 47.619 0.00 0.00 0.00 2.74
345 346 4.084849 GGAATGTCGCATTCTCGTTCTATG 60.085 45.833 22.80 0.00 0.00 2.23
346 347 4.051922 GGAATGTCGCATTCTCGTTCTAT 58.948 43.478 22.80 0.00 0.00 1.98
347 348 3.444916 GGAATGTCGCATTCTCGTTCTA 58.555 45.455 22.80 0.00 0.00 2.10
348 349 2.271800 GGAATGTCGCATTCTCGTTCT 58.728 47.619 22.80 0.00 0.00 3.01
349 350 1.005975 CGGAATGTCGCATTCTCGTTC 60.006 52.381 22.80 11.33 0.00 3.95
350 351 0.999406 CGGAATGTCGCATTCTCGTT 59.001 50.000 22.80 0.00 0.00 3.85
351 352 0.172578 TCGGAATGTCGCATTCTCGT 59.827 50.000 22.80 0.00 0.00 4.18
352 353 1.277326 TTCGGAATGTCGCATTCTCG 58.723 50.000 22.80 22.31 0.00 4.04
353 354 3.740044 TTTTCGGAATGTCGCATTCTC 57.260 42.857 22.80 15.61 0.00 2.87
371 372 6.432403 TCTCCACAAATGGCCTTTATTTTT 57.568 33.333 3.32 0.00 46.80 1.94
372 373 6.432403 TTCTCCACAAATGGCCTTTATTTT 57.568 33.333 3.32 0.00 46.80 1.82
373 374 6.013466 ACATTCTCCACAAATGGCCTTTATTT 60.013 34.615 3.32 0.00 46.80 1.40
374 375 5.484998 ACATTCTCCACAAATGGCCTTTATT 59.515 36.000 3.32 0.00 46.80 1.40
375 376 5.025453 ACATTCTCCACAAATGGCCTTTAT 58.975 37.500 3.32 0.00 46.80 1.40
376 377 4.415596 ACATTCTCCACAAATGGCCTTTA 58.584 39.130 3.32 0.00 46.80 1.85
377 378 3.242011 ACATTCTCCACAAATGGCCTTT 58.758 40.909 3.32 0.00 46.80 3.11
378 379 2.893424 ACATTCTCCACAAATGGCCTT 58.107 42.857 3.32 0.00 46.80 4.35
379 380 2.564062 CAACATTCTCCACAAATGGCCT 59.436 45.455 3.32 0.00 46.80 5.19
380 381 2.299867 ACAACATTCTCCACAAATGGCC 59.700 45.455 0.00 0.00 46.80 5.36
381 382 3.665745 ACAACATTCTCCACAAATGGC 57.334 42.857 0.00 0.00 46.80 4.40
383 384 5.816777 ACCAAAACAACATTCTCCACAAATG 59.183 36.000 0.00 0.00 39.50 2.32
384 385 5.816777 CACCAAAACAACATTCTCCACAAAT 59.183 36.000 0.00 0.00 0.00 2.32
385 386 5.047021 TCACCAAAACAACATTCTCCACAAA 60.047 36.000 0.00 0.00 0.00 2.83
386 387 4.464244 TCACCAAAACAACATTCTCCACAA 59.536 37.500 0.00 0.00 0.00 3.33
387 388 4.019858 TCACCAAAACAACATTCTCCACA 58.980 39.130 0.00 0.00 0.00 4.17
388 389 4.359706 GTCACCAAAACAACATTCTCCAC 58.640 43.478 0.00 0.00 0.00 4.02
389 390 3.383185 GGTCACCAAAACAACATTCTCCA 59.617 43.478 0.00 0.00 0.00 3.86
390 391 3.550030 CGGTCACCAAAACAACATTCTCC 60.550 47.826 0.00 0.00 0.00 3.71
391 392 3.314080 TCGGTCACCAAAACAACATTCTC 59.686 43.478 0.00 0.00 0.00 2.87
392 393 3.283751 TCGGTCACCAAAACAACATTCT 58.716 40.909 0.00 0.00 0.00 2.40
393 394 3.628017 CTCGGTCACCAAAACAACATTC 58.372 45.455 0.00 0.00 0.00 2.67
394 395 2.223711 GCTCGGTCACCAAAACAACATT 60.224 45.455 0.00 0.00 0.00 2.71
395 396 1.336755 GCTCGGTCACCAAAACAACAT 59.663 47.619 0.00 0.00 0.00 2.71
396 397 0.736053 GCTCGGTCACCAAAACAACA 59.264 50.000 0.00 0.00 0.00 3.33
397 398 1.002792 GAGCTCGGTCACCAAAACAAC 60.003 52.381 0.00 0.00 0.00 3.32
398 399 1.305201 GAGCTCGGTCACCAAAACAA 58.695 50.000 0.00 0.00 0.00 2.83
399 400 0.179234 TGAGCTCGGTCACCAAAACA 59.821 50.000 9.64 0.00 0.00 2.83
400 401 0.586802 GTGAGCTCGGTCACCAAAAC 59.413 55.000 16.18 0.00 40.96 2.43
401 402 0.468226 AGTGAGCTCGGTCACCAAAA 59.532 50.000 21.54 0.00 46.94 2.44
402 403 0.249868 CAGTGAGCTCGGTCACCAAA 60.250 55.000 21.54 0.00 46.94 3.28
403 404 1.367471 CAGTGAGCTCGGTCACCAA 59.633 57.895 21.54 0.00 46.94 3.67
404 405 2.574018 CCAGTGAGCTCGGTCACCA 61.574 63.158 21.54 0.00 46.94 4.17
405 406 2.219325 CTCCAGTGAGCTCGGTCACC 62.219 65.000 21.54 7.76 46.94 4.02
406 407 1.214062 CTCCAGTGAGCTCGGTCAC 59.786 63.158 18.61 18.61 46.22 3.67
407 408 3.686760 CTCCAGTGAGCTCGGTCA 58.313 61.111 9.64 0.00 0.00 4.02
486 489 9.853555 CATAACATCCTTATTTACTTGCACAAA 57.146 29.630 0.00 0.00 0.00 2.83
534 537 7.897575 AGATAGCATTTCGAGGTATTTCATC 57.102 36.000 0.00 0.00 30.48 2.92
564 567 5.058490 CACAGGCCATGAATTTGTCTTTTT 58.942 37.500 5.01 0.00 0.00 1.94
569 572 2.165030 CCTCACAGGCCATGAATTTGTC 59.835 50.000 5.01 0.00 0.00 3.18
570 573 2.173519 CCTCACAGGCCATGAATTTGT 58.826 47.619 5.01 0.00 0.00 2.83
571 574 2.449464 TCCTCACAGGCCATGAATTTG 58.551 47.619 5.01 0.00 34.61 2.32
572 575 2.905415 TCCTCACAGGCCATGAATTT 57.095 45.000 5.01 0.00 34.61 1.82
575 578 4.524802 ATTTATCCTCACAGGCCATGAA 57.475 40.909 5.01 0.00 34.61 2.57
576 579 4.660303 ACTATTTATCCTCACAGGCCATGA 59.340 41.667 5.01 7.63 34.61 3.07
577 580 4.978099 ACTATTTATCCTCACAGGCCATG 58.022 43.478 5.01 2.37 34.61 3.66
578 581 5.846714 AGTACTATTTATCCTCACAGGCCAT 59.153 40.000 5.01 0.00 34.61 4.40
579 582 5.216622 AGTACTATTTATCCTCACAGGCCA 58.783 41.667 5.01 0.00 34.61 5.36
580 583 5.810080 AGTACTATTTATCCTCACAGGCC 57.190 43.478 0.00 0.00 34.61 5.19
595 598 9.148879 AGGCTTTCTAACACATGATAGTACTAT 57.851 33.333 15.37 15.37 0.00 2.12
596 599 8.534954 AGGCTTTCTAACACATGATAGTACTA 57.465 34.615 4.77 4.77 0.00 1.82
597 600 7.124298 TGAGGCTTTCTAACACATGATAGTACT 59.876 37.037 0.00 0.00 0.00 2.73
598 601 7.265673 TGAGGCTTTCTAACACATGATAGTAC 58.734 38.462 0.00 0.00 0.00 2.73
601 604 6.577103 TCTGAGGCTTTCTAACACATGATAG 58.423 40.000 0.00 0.00 0.00 2.08
607 610 6.959639 AAAAATCTGAGGCTTTCTAACACA 57.040 33.333 0.00 0.00 0.00 3.72
633 636 5.021033 ACATTGAAATGAAGGTTGTGCAA 57.979 34.783 9.94 0.00 39.67 4.08
806 809 2.496899 AGGACACAGATGGCGAAAAT 57.503 45.000 0.00 0.00 32.81 1.82
1182 1206 4.704103 TCCCTGAGCAGACCGCCT 62.704 66.667 0.00 0.00 44.04 5.52
1188 1212 2.676232 CTCCAACTCCCTGAGCAGA 58.324 57.895 0.00 0.00 32.04 4.26
1595 1628 3.937706 CCAGGATCACTTGAACAGATCAC 59.062 47.826 0.00 0.00 39.85 3.06
1657 1690 0.727398 GCCAGTACCGAATTGCAGTC 59.273 55.000 0.00 0.00 0.00 3.51
1665 1698 2.345991 GTGGCTGCCAGTACCGAA 59.654 61.111 24.10 0.00 32.34 4.30
1667 1701 2.742372 GTGTGGCTGCCAGTACCG 60.742 66.667 24.10 0.00 32.34 4.02
1710 1752 7.234577 TGTGATAGGAGCCCTAAAAACAAAATT 59.765 33.333 5.22 0.00 39.77 1.82
1720 1841 2.504175 GGTTGTGTGATAGGAGCCCTAA 59.496 50.000 5.22 0.00 39.77 2.69
1727 1848 2.234661 CAGCAGAGGTTGTGTGATAGGA 59.765 50.000 0.00 0.00 0.00 2.94
1730 1853 1.977854 ACCAGCAGAGGTTGTGTGATA 59.022 47.619 0.00 0.00 39.34 2.15
1758 1881 6.423905 TGCTAGACAAGGATGATTATTAACGC 59.576 38.462 0.00 0.00 0.00 4.84
1769 1892 0.531532 CGGCCTGCTAGACAAGGATG 60.532 60.000 0.00 0.00 0.00 3.51
1884 2032 9.805966 GCTTTGGATTTAAATTTTAGAAAACGG 57.194 29.630 1.43 0.00 0.00 4.44
1893 2043 7.424803 GCCACAAAGCTTTGGATTTAAATTTT 58.575 30.769 35.65 13.24 42.34 1.82
1910 2060 1.021202 TGGTCAAAGACGCCACAAAG 58.979 50.000 0.00 0.00 32.65 2.77
1946 2124 2.677836 TGCACTTGTCACTTTGTCAGAC 59.322 45.455 0.00 0.00 0.00 3.51
1978 2156 7.201530 GCACTAGTCAACTAATATGGTCAACAC 60.202 40.741 0.00 0.00 0.00 3.32
2354 4120 1.276421 TCAGTAGCTCCTTGAACCTGC 59.724 52.381 0.00 0.00 0.00 4.85
2465 4231 6.866770 TGAAACGTCACTCTACTAATTTCCAG 59.133 38.462 0.00 0.00 0.00 3.86
2484 4250 6.464895 AACAAATAACATTGGCATGAAACG 57.535 33.333 0.00 0.00 34.56 3.60
2627 4523 6.642683 ACAAGTATGCACGTGTATAACTTC 57.357 37.500 25.04 14.18 44.19 3.01
2798 4912 8.913487 AGTCATGCAAGATATTGATGATGTTA 57.087 30.769 3.77 0.00 0.00 2.41
3012 5126 8.866956 CAATATTGAAGATTTTCTGTTCTTGCC 58.133 33.333 10.04 0.00 32.46 4.52
3063 5177 8.960591 CAAATCCCACACAAGTTTCTTCTATAT 58.039 33.333 0.00 0.00 0.00 0.86
3187 5301 8.774586 GTTAGTTAGTTAGGATATTGGCACATG 58.225 37.037 0.00 0.00 39.30 3.21
3202 5316 8.367156 ACGGGTATTCACTTTGTTAGTTAGTTA 58.633 33.333 0.00 0.00 33.85 2.24
3230 5344 9.312904 TCAATTCTTTATTGGAAAGACAAGGAT 57.687 29.630 0.00 0.00 43.19 3.24
3268 5382 7.611213 ACTTAGGGAGTTCAAATAACATTCG 57.389 36.000 0.00 0.00 33.92 3.34
3561 5678 9.661563 AGATGTTTTGAATTCATGCACATTTAT 57.338 25.926 20.36 11.99 0.00 1.40
3589 5708 7.565398 AGATCTCTGTAGCCTTCCATTTAACTA 59.435 37.037 0.00 0.00 0.00 2.24
3819 5942 2.826488 AGTCTCTATGGACAAGGCAGT 58.174 47.619 0.00 0.00 38.57 4.40
4230 7143 9.155975 TGAACTATAAGAAATCTTGCTTCAGAC 57.844 33.333 5.93 0.00 37.40 3.51
4232 7145 8.939929 TGTGAACTATAAGAAATCTTGCTTCAG 58.060 33.333 5.93 0.00 37.40 3.02
4365 7390 0.035630 GCTCATGCAACCTCTGGTCT 60.036 55.000 0.00 0.00 39.41 3.85
4371 7396 0.524862 CCACAAGCTCATGCAACCTC 59.475 55.000 0.00 0.00 42.74 3.85
4882 7980 7.083858 AGAAACATGAAACATCATACGTTTGG 58.916 34.615 0.00 0.00 36.72 3.28
5037 8179 9.557338 GAAGTTTGATGATTTCTCATTTCTCAG 57.443 33.333 0.00 0.00 42.27 3.35
5453 8658 6.762187 CAGAAGAGCAAGATTAGACATGATGT 59.238 38.462 0.00 0.00 0.00 3.06
5462 8800 3.557228 AGCCCAGAAGAGCAAGATTAG 57.443 47.619 0.00 0.00 0.00 1.73
5537 10227 0.526096 CGGATTCAAATTGCCTGCCG 60.526 55.000 0.00 0.00 0.00 5.69
5621 10364 2.417339 TCCAAGTCGAAGTCGTTCTG 57.583 50.000 0.00 0.00 40.80 3.02
5622 10365 3.005472 TGAATCCAAGTCGAAGTCGTTCT 59.995 43.478 0.00 0.00 40.80 3.01
5623 10366 3.314553 TGAATCCAAGTCGAAGTCGTTC 58.685 45.455 0.00 0.00 40.80 3.95
5624 10367 3.380479 TGAATCCAAGTCGAAGTCGTT 57.620 42.857 0.00 0.00 40.80 3.85
5625 10368 3.380479 TTGAATCCAAGTCGAAGTCGT 57.620 42.857 0.00 0.00 40.80 4.34
5637 10380 2.367030 CGGCAAGCAATTTGAATCCA 57.633 45.000 0.00 0.00 39.21 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.