AutoCloner

Multiple sequence alignment - TraesCS7B01G332600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G332600	chr7B	100.000	2864	0	0	1	2864	588083687	588086550	0.000000e+00	5289.0
1	TraesCS7B01G332600	chr7B	95.495	2331	101	4	535	2864	588252769	588255096	0.000000e+00	3720.0
2	TraesCS7B01G332600	chr7B	95.109	2331	105	5	535	2864	588261925	588264247	0.000000e+00	3664.0
3	TraesCS7B01G332600	chr7B	95.814	1744	73	0	535	2278	588239418	588241161	0.000000e+00	2817.0
4	TraesCS7B01G332600	chr7B	86.844	1505	176	15	594	2091	514062904	514061415	0.000000e+00	1663.0
5	TraesCS7B01G332600	chr7B	88.290	1281	150	0	535	1815	588285868	588287148	0.000000e+00	1535.0
6	TraesCS7B01G332600	chr7B	80.512	1211	215	12	614	1821	443327535	443326343	0.000000e+00	909.0
7	TraesCS7B01G332600	chr7B	94.388	588	19	3	2278	2864	588241987	588242561	0.000000e+00	891.0
8	TraesCS7B01G332600	chr7B	100.000	31	0	0	2823	2853	514061374	514061404	1.110000e-04	58.4
9	TraesCS7B01G332600	chr7D	93.949	2099	88	9	141	2226	544777708	544779780	0.000000e+00	3136.0
10	TraesCS7B01G332600	chr7D	86.943	1930	214	24	594	2514	486241599	486239699	0.000000e+00	2134.0
11	TraesCS7B01G332600	chr7D	95.706	1281	55	0	535	1815	544849322	544850602	0.000000e+00	2061.0
12	TraesCS7B01G332600	chr7D	80.890	1214	217	11	614	1821	425731388	425730184	0.000000e+00	942.0
13	TraesCS7B01G332600	chr7D	96.455	536	17	2	2330	2864	544779788	544780322	0.000000e+00	883.0
14	TraesCS7B01G332600	chr7A	94.906	1708	66	8	1009	2715	626603284	626604971	0.000000e+00	2652.0
15	TraesCS7B01G332600	chr7A	94.675	1709	68	10	1009	2715	626572330	626574017	0.000000e+00	2630.0
16	TraesCS7B01G332600	chr7A	89.668	784	74	6	232	1011	626597331	626598111	0.000000e+00	992.0
17	TraesCS7B01G332600	chr7A	96.273	161	6	0	2704	2864	626605085	626605245	6.080000e-67	265.0
18	TraesCS7B01G332600	chr7A	97.727	44	1	0	232	275	626566401	626566444	3.060000e-10	76.8
19	TraesCS7B01G332600	chr3B	95.775	142	5	1	1	142	667719903	667719763	7.980000e-56	228.0
20	TraesCS7B01G332600	chr3B	91.724	145	8	3	1	143	205090609	205090751	6.260000e-47	198.0
21	TraesCS7B01G332600	chr5B	93.103	145	6	2	1	143	257331056	257331198	2.890000e-50	209.0
22	TraesCS7B01G332600	chr5B	95.935	123	4	1	21	143	458724177	458724298	6.260000e-47	198.0
23	TraesCS7B01G332600	chr5B	91.724	145	7	4	1	143	467161849	467161708	2.250000e-46	196.0
24	TraesCS7B01G332600	chr2B	91.724	145	8	3	1	143	24524066	24524208	6.260000e-47	198.0
25	TraesCS7B01G332600	chr1B	91.724	145	8	3	1	143	60529468	60529326	6.260000e-47	198.0
26	TraesCS7B01G332600	chr4A	91.096	146	9	3	1	144	702146616	702146473	8.100000e-46	195.0
27	TraesCS7B01G332600	chr4B	91.034	145	8	4	1	143	535749645	535749786	1.050000e-44	191.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G332600	chr7B	588083687	588086550	2863	False	5289.0	5289	100.0000	1	2864	1	chr7B.!!$F2	2863
1	TraesCS7B01G332600	chr7B	588252769	588255096	2327	False	3720.0	3720	95.4950	535	2864	1	chr7B.!!$F3	2329
2	TraesCS7B01G332600	chr7B	588261925	588264247	2322	False	3664.0	3664	95.1090	535	2864	1	chr7B.!!$F4	2329
3	TraesCS7B01G332600	chr7B	588239418	588242561	3143	False	1854.0	2817	95.1010	535	2864	2	chr7B.!!$F6	2329
4	TraesCS7B01G332600	chr7B	514061415	514062904	1489	True	1663.0	1663	86.8440	594	2091	1	chr7B.!!$R2	1497
5	TraesCS7B01G332600	chr7B	588285868	588287148	1280	False	1535.0	1535	88.2900	535	1815	1	chr7B.!!$F5	1280
6	TraesCS7B01G332600	chr7B	443326343	443327535	1192	True	909.0	909	80.5120	614	1821	1	chr7B.!!$R1	1207
7	TraesCS7B01G332600	chr7D	486239699	486241599	1900	True	2134.0	2134	86.9430	594	2514	1	chr7D.!!$R2	1920
8	TraesCS7B01G332600	chr7D	544849322	544850602	1280	False	2061.0	2061	95.7060	535	1815	1	chr7D.!!$F1	1280
9	TraesCS7B01G332600	chr7D	544777708	544780322	2614	False	2009.5	3136	95.2020	141	2864	2	chr7D.!!$F2	2723
10	TraesCS7B01G332600	chr7D	425730184	425731388	1204	True	942.0	942	80.8900	614	1821	1	chr7D.!!$R1	1207
11	TraesCS7B01G332600	chr7A	626572330	626574017	1687	False	2630.0	2630	94.6750	1009	2715	1	chr7A.!!$F2	1706
12	TraesCS7B01G332600	chr7A	626603284	626605245	1961	False	1458.5	2652	95.5895	1009	2864	2	chr7A.!!$F4	1855
13	TraesCS7B01G332600	chr7A	626597331	626598111	780	False	992.0	992	89.6680	232	1011	1	chr7A.!!$F3	779

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
22	23	0.248949	GGTCGAATCCTCACGGTAGC	60.249	60.0	0.0	0.0	0.00	3.58	F
1257	1280	0.321122	CTCACTGGAACTGGCTCCAC	60.321	60.0	0.0	0.0	40.71	4.02	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1411	1434	1.535204	CCCCATGGTGCCTGAACAAC	61.535	60.0	11.73	0.0	0.00	3.32	R
2156	2183	2.051334	TTCCCCAATATGAGTTGGCG	57.949	50.0	0.17	0.0	45.85	5.69	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
17	18	4.072913	CGTGGTCGAATCCTCACG	57.927	61.111	10.41	10.41	44.98	4.35
18	19	1.516386	CGTGGTCGAATCCTCACGG	60.516	63.158	14.38	0.00	46.05	4.94
19	20	1.590147	GTGGTCGAATCCTCACGGT	59.410	57.895	0.00	0.00	0.00	4.83
20	21	0.813184	GTGGTCGAATCCTCACGGTA	59.187	55.000	0.00	0.00	0.00	4.02
21	22	1.100510	TGGTCGAATCCTCACGGTAG	58.899	55.000	0.00	0.00	0.00	3.18
22	23	0.248949	GGTCGAATCCTCACGGTAGC	60.249	60.000	0.00	0.00	0.00	3.58
23	24	0.454600	GTCGAATCCTCACGGTAGCA	59.545	55.000	0.00	0.00	0.00	3.49
24	25	1.135199	GTCGAATCCTCACGGTAGCAA	60.135	52.381	0.00	0.00	0.00	3.91
25	26	1.135199	TCGAATCCTCACGGTAGCAAC	60.135	52.381	0.00	0.00	0.00	4.17
26	27	1.403647	CGAATCCTCACGGTAGCAACA	60.404	52.381	0.00	0.00	0.00	3.33
27	28	2.000447	GAATCCTCACGGTAGCAACAC	59.000	52.381	0.00	0.00	0.00	3.32
28	29	1.267121	ATCCTCACGGTAGCAACACT	58.733	50.000	0.00	0.00	0.00	3.55
29	30	1.045407	TCCTCACGGTAGCAACACTT	58.955	50.000	0.00	0.00	0.00	3.16
30	31	1.414919	TCCTCACGGTAGCAACACTTT	59.585	47.619	0.00	0.00	0.00	2.66
31	32	2.158871	TCCTCACGGTAGCAACACTTTT	60.159	45.455	0.00	0.00	0.00	2.27
32	33	2.616842	CCTCACGGTAGCAACACTTTTT	59.383	45.455	0.00	0.00	0.00	1.94
33	34	3.810941	CCTCACGGTAGCAACACTTTTTA	59.189	43.478	0.00	0.00	0.00	1.52
34	35	4.273969	CCTCACGGTAGCAACACTTTTTAA	59.726	41.667	0.00	0.00	0.00	1.52
35	36	5.412526	TCACGGTAGCAACACTTTTTAAG	57.587	39.130	0.00	0.00	0.00	1.85
36	37	4.273969	TCACGGTAGCAACACTTTTTAAGG	59.726	41.667	0.00	0.00	0.00	2.69
37	38	3.566742	ACGGTAGCAACACTTTTTAAGGG	59.433	43.478	0.00	0.00	38.11	3.95
39	40	4.756135	CGGTAGCAACACTTTTTAAGGGTA	59.244	41.667	0.00	0.00	46.52	3.69
40	41	5.413523	CGGTAGCAACACTTTTTAAGGGTAT	59.586	40.000	0.00	0.00	46.52	2.73
41	42	6.072342	CGGTAGCAACACTTTTTAAGGGTATT	60.072	38.462	0.00	0.00	46.52	1.89
42	43	7.522562	CGGTAGCAACACTTTTTAAGGGTATTT	60.523	37.037	0.00	0.00	46.52	1.40
43	44	8.145767	GGTAGCAACACTTTTTAAGGGTATTTT	58.854	33.333	0.00	0.00	46.52	1.82
44	45	9.537192	GTAGCAACACTTTTTAAGGGTATTTTT	57.463	29.630	0.00	0.00	46.52	1.94
65	66	3.688694	TTTGTGGTATAGAAGCCGTGT	57.311	42.857	0.00	0.00	0.00	4.49
66	67	2.953466	TGTGGTATAGAAGCCGTGTC	57.047	50.000	0.00	0.00	0.00	3.67
67	68	1.133598	TGTGGTATAGAAGCCGTGTCG	59.866	52.381	0.00	0.00	0.00	4.35
68	69	1.133790	GTGGTATAGAAGCCGTGTCGT	59.866	52.381	0.00	0.00	0.00	4.34
69	70	1.133598	TGGTATAGAAGCCGTGTCGTG	59.866	52.381	0.00	0.00	0.00	4.35
70	71	1.535437	GGTATAGAAGCCGTGTCGTGG	60.535	57.143	0.00	0.00	0.00	4.94
71	72	0.742505	TATAGAAGCCGTGTCGTGGG	59.257	55.000	0.00	0.00	0.00	4.61
113	114	3.435186	GCGCCAGCTTCCTGAACC	61.435	66.667	0.00	0.00	41.77	3.62
114	115	3.121030	CGCCAGCTTCCTGAACCG	61.121	66.667	0.00	0.00	41.77	4.44
115	116	2.747855	GCCAGCTTCCTGAACCGG	60.748	66.667	0.00	0.00	41.77	5.28
116	117	2.747855	CCAGCTTCCTGAACCGGC	60.748	66.667	0.00	0.00	41.77	6.13
117	118	3.121030	CAGCTTCCTGAACCGGCG	61.121	66.667	0.00	0.00	41.77	6.46
120	121	2.358737	CTTCCTGAACCGGCGCTT	60.359	61.111	7.64	0.00	0.00	4.68
121	122	1.079405	CTTCCTGAACCGGCGCTTA	60.079	57.895	7.64	0.00	0.00	3.09
122	123	0.672401	CTTCCTGAACCGGCGCTTAA	60.672	55.000	7.64	0.00	0.00	1.85
123	124	0.672401	TTCCTGAACCGGCGCTTAAG	60.672	55.000	7.64	0.00	0.00	1.85
124	125	2.106683	CCTGAACCGGCGCTTAAGG	61.107	63.158	7.64	3.97	0.00	2.69
125	126	2.744709	TGAACCGGCGCTTAAGGC	60.745	61.111	7.64	6.03	37.64	4.35
134	135	3.406559	GCTTAAGGCGCCGGTTAG	58.593	61.111	23.20	17.07	0.00	2.34
135	136	2.178235	GCTTAAGGCGCCGGTTAGG	61.178	63.158	23.20	16.37	44.97	2.69
136	137	1.518774	CTTAAGGCGCCGGTTAGGA	59.481	57.895	23.20	3.11	45.00	2.94
137	138	0.529992	CTTAAGGCGCCGGTTAGGAG	60.530	60.000	23.20	9.54	45.00	3.69
152	153	4.554036	GAGCTCCCGCCACCCATC	62.554	72.222	0.87	0.00	36.60	3.51
174	175	1.606224	CCAAATCCAAGCACAAGCACC	60.606	52.381	0.00	0.00	45.49	5.01
175	176	1.068895	CAAATCCAAGCACAAGCACCA	59.931	47.619	0.00	0.00	45.49	4.17
176	177	1.636148	AATCCAAGCACAAGCACCAT	58.364	45.000	0.00	0.00	45.49	3.55
177	178	1.636148	ATCCAAGCACAAGCACCATT	58.364	45.000	0.00	0.00	45.49	3.16
310	311	2.603776	GGACCTGACCTCCCACGT	60.604	66.667	0.00	0.00	0.00	4.49
419	420	2.202892	CTCCGCTACCTTTCCCGC	60.203	66.667	0.00	0.00	0.00	6.13
421	422	4.851179	CCGCTACCTTTCCCGCCC	62.851	72.222	0.00	0.00	0.00	6.13
472	486	3.591835	GGAGCGCGAGAGGAGGAG	61.592	72.222	12.10	0.00	0.00	3.69
473	487	2.515057	GAGCGCGAGAGGAGGAGA	60.515	66.667	12.10	0.00	0.00	3.71
474	488	2.515991	AGCGCGAGAGGAGGAGAG	60.516	66.667	12.10	0.00	0.00	3.20
475	489	2.515057	GCGCGAGAGGAGGAGAGA	60.515	66.667	12.10	0.00	0.00	3.10
476	490	2.542907	GCGCGAGAGGAGGAGAGAG	61.543	68.421	12.10	0.00	0.00	3.20
477	491	1.891919	CGCGAGAGGAGGAGAGAGG	60.892	68.421	0.00	0.00	0.00	3.69
478	492	1.529796	GCGAGAGGAGGAGAGAGGA	59.470	63.158	0.00	0.00	0.00	3.71
574	597	1.154016	CGCGTGATTGGAGTCGACT	60.154	57.895	20.18	20.18	0.00	4.18
576	599	1.466866	CGCGTGATTGGAGTCGACTTA	60.467	52.381	21.08	9.48	0.00	2.24
592	615	3.190744	CGACTTACTCTGAAGCTGTGGTA	59.809	47.826	0.00	0.00	0.00	3.25
605	628	3.580458	AGCTGTGGTATTTGTCTCTGTCT	59.420	43.478	0.00	0.00	0.00	3.41
890	913	0.393537	CCTGAACCTCCCATCAGCAC	60.394	60.000	0.00	0.00	41.36	4.40
1042	1065	6.211587	TCATAAACGAAGACGGGATTCTTA	57.788	37.500	0.00	0.00	44.46	2.10
1257	1280	0.321122	CTCACTGGAACTGGCTCCAC	60.321	60.000	0.00	0.00	40.71	4.02
1272	1295	3.561725	GGCTCCACATGCATAGTTTCTAC	59.438	47.826	0.00	0.00	0.00	2.59
1411	1434	1.471676	GGATGGTCCAGAAGTGCTACG	60.472	57.143	0.00	0.00	36.28	3.51
1624	1647	2.708216	TAGCGCAAAGGATCATCCAA	57.292	45.000	11.47	0.00	39.61	3.53
1972	1995	3.928375	GCTTCAGCATTTGGTTATGTTGG	59.072	43.478	0.00	0.00	41.59	3.77
2205	2232	9.315525	GGAAACTATAAAGTGTGAATAGTCTCC	57.684	37.037	0.00	0.00	36.61	3.71
2337	3190	5.163703	GGATACAATGGACAAATGTGCGTTA	60.164	40.000	11.43	0.00	42.45	3.18
2376	3229	3.760151	CCATGATCACACACAAACTCCAT	59.240	43.478	0.00	0.00	0.00	3.41

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	4.072913	CGTGAGGATTCGACCACG	57.927	61.111	0.00	0.00	44.66	4.94
12	13	3.963383	AAAAAGTGTTGCTACCGTGAG	57.037	42.857	0.00	0.00	0.00	3.51
13	14	4.273969	CCTTAAAAAGTGTTGCTACCGTGA	59.726	41.667	0.00	0.00	0.00	4.35
14	15	4.533222	CCTTAAAAAGTGTTGCTACCGTG	58.467	43.478	0.00	0.00	0.00	4.94
15	16	3.566742	CCCTTAAAAAGTGTTGCTACCGT	59.433	43.478	0.00	0.00	0.00	4.83
16	17	3.566742	ACCCTTAAAAAGTGTTGCTACCG	59.433	43.478	0.00	0.00	0.00	4.02
17	18	6.829229	ATACCCTTAAAAAGTGTTGCTACC	57.171	37.500	0.00	0.00	0.00	3.18
18	19	9.537192	AAAAATACCCTTAAAAAGTGTTGCTAC	57.463	29.630	0.00	0.00	0.00	3.58
43	44	4.391155	ACACGGCTTCTATACCACAAAAA	58.609	39.130	0.00	0.00	0.00	1.94
44	45	3.998341	GACACGGCTTCTATACCACAAAA	59.002	43.478	0.00	0.00	0.00	2.44
45	46	3.592059	GACACGGCTTCTATACCACAAA	58.408	45.455	0.00	0.00	0.00	2.83
46	47	2.416296	CGACACGGCTTCTATACCACAA	60.416	50.000	0.00	0.00	0.00	3.33
47	48	1.133598	CGACACGGCTTCTATACCACA	59.866	52.381	0.00	0.00	0.00	4.17
48	49	1.133790	ACGACACGGCTTCTATACCAC	59.866	52.381	0.00	0.00	0.00	4.16
49	50	1.133598	CACGACACGGCTTCTATACCA	59.866	52.381	0.00	0.00	0.00	3.25
50	51	1.535437	CCACGACACGGCTTCTATACC	60.535	57.143	0.00	0.00	0.00	2.73
51	52	1.535437	CCCACGACACGGCTTCTATAC	60.535	57.143	0.00	0.00	0.00	1.47
52	53	0.742505	CCCACGACACGGCTTCTATA	59.257	55.000	0.00	0.00	0.00	1.31
53	54	1.515954	CCCACGACACGGCTTCTAT	59.484	57.895	0.00	0.00	0.00	1.98
54	55	2.967397	CCCACGACACGGCTTCTA	59.033	61.111	0.00	0.00	0.00	2.10
55	56	4.681978	GCCCACGACACGGCTTCT	62.682	66.667	0.00	0.00	42.21	2.85
96	97	3.435186	GGTTCAGGAAGCTGGCGC	61.435	66.667	0.00	0.00	36.02	6.53
97	98	3.121030	CGGTTCAGGAAGCTGGCG	61.121	66.667	9.27	0.00	36.72	5.69
98	99	2.747855	CCGGTTCAGGAAGCTGGC	60.748	66.667	9.27	0.00	36.72	4.85
99	100	2.747855	GCCGGTTCAGGAAGCTGG	60.748	66.667	1.90	11.85	36.72	4.85
100	101	3.121030	CGCCGGTTCAGGAAGCTG	61.121	66.667	1.90	4.29	36.72	4.24
103	104	0.672401	TTAAGCGCCGGTTCAGGAAG	60.672	55.000	4.18	0.00	0.00	3.46
104	105	0.672401	CTTAAGCGCCGGTTCAGGAA	60.672	55.000	4.18	0.00	0.00	3.36
105	106	1.079405	CTTAAGCGCCGGTTCAGGA	60.079	57.895	4.18	0.00	0.00	3.86
106	107	2.106683	CCTTAAGCGCCGGTTCAGG	61.107	63.158	14.08	14.08	29.99	3.86
107	108	2.750888	GCCTTAAGCGCCGGTTCAG	61.751	63.158	4.18	3.71	0.00	3.02
108	109	2.744709	GCCTTAAGCGCCGGTTCA	60.745	61.111	4.18	0.00	0.00	3.18
117	118	2.178235	CCTAACCGGCGCCTTAAGC	61.178	63.158	26.68	0.00	38.52	3.09
118	119	0.529992	CTCCTAACCGGCGCCTTAAG	60.530	60.000	26.68	15.67	0.00	1.85
119	120	1.518774	CTCCTAACCGGCGCCTTAA	59.481	57.895	26.68	6.15	0.00	1.85
120	121	3.085119	GCTCCTAACCGGCGCCTTA	62.085	63.158	26.68	16.18	37.54	2.69
121	122	4.468689	GCTCCTAACCGGCGCCTT	62.469	66.667	26.68	15.87	37.54	4.35
123	124	4.893601	GAGCTCCTAACCGGCGCC	62.894	72.222	19.07	19.07	44.75	6.53
124	125	4.893601	GGAGCTCCTAACCGGCGC	62.894	72.222	26.25	0.00	43.98	6.53
125	126	4.222847	GGGAGCTCCTAACCGGCG	62.223	72.222	31.36	0.00	35.95	6.46
126	127	4.222847	CGGGAGCTCCTAACCGGC	62.223	72.222	31.36	12.50	42.48	6.13
150	151	2.181975	CTTGTGCTTGGATTTGGGGAT	58.818	47.619	0.00	0.00	0.00	3.85
151	152	1.631405	CTTGTGCTTGGATTTGGGGA	58.369	50.000	0.00	0.00	0.00	4.81
152	153	0.037046	GCTTGTGCTTGGATTTGGGG	60.037	55.000	0.00	0.00	36.03	4.96
456	460	2.515057	TCTCCTCCTCTCGCGCTC	60.515	66.667	5.56	0.00	0.00	5.03
487	501	3.246880	ACCGGGAAAACCCTCGCT	61.247	61.111	6.32	0.00	34.99	4.93
502	516	2.359967	CCTTCCCTCGGGAGACACC	61.360	68.421	4.63	0.00	46.06	4.16
518	532	2.122099	AACCACCCCTTCGTCCCT	60.122	61.111	0.00	0.00	0.00	4.20
558	581	3.127203	AGAGTAAGTCGACTCCAATCACG	59.873	47.826	20.33	0.00	45.97	4.35
566	589	3.189702	ACAGCTTCAGAGTAAGTCGACTC	59.810	47.826	20.33	7.41	45.30	3.36
574	597	5.865085	ACAAATACCACAGCTTCAGAGTAA	58.135	37.500	0.00	0.00	0.00	2.24
576	599	4.040952	AGACAAATACCACAGCTTCAGAGT	59.959	41.667	0.00	0.00	0.00	3.24
592	615	6.070021	TCCATTGTGGATAGACAGAGACAAAT	60.070	38.462	0.00	0.00	42.67	2.32
787	810	1.269831	GGCCTCGGTGCAATAGAGTAG	60.270	57.143	0.00	1.69	0.00	2.57
890	913	2.691526	CCATGTGATGAACCAATCCAGG	59.308	50.000	0.00	0.00	0.00	4.45
927	950	3.704512	CATCAGGTCAGACTTCTCATCG	58.295	50.000	0.00	0.00	0.00	3.84
1042	1065	8.560374	GTCATAGAAAGACAGCTTGTACTTTTT	58.440	33.333	0.00	0.00	36.06	1.94
1257	1280	5.438117	CAATCTGCGTAGAAACTATGCATG	58.562	41.667	20.75	14.64	38.58	4.06
1272	1295	6.611825	CCATCATGGTGTATGCAATCTGCG	62.612	50.000	5.00	0.00	38.42	5.18
1411	1434	1.535204	CCCCATGGTGCCTGAACAAC	61.535	60.000	11.73	0.00	0.00	3.32
1972	1995	6.436218	TCTTAGCCAAAGGGGTTTAAGAAATC	59.564	38.462	0.00	0.00	44.14	2.17
2156	2183	2.051334	TTCCCCAATATGAGTTGGCG	57.949	50.000	0.17	0.00	45.85	5.69
2205	2232	8.525316	AGATCTAGATTATCTTGCATCTGTCTG	58.475	37.037	6.70	0.00	31.89	3.51
2284	3137	7.754091	TTCTGGATTATCTGCCATCCATATA	57.246	36.000	1.37	0.00	46.43	0.86
2337	3190	3.329520	TCATGGCAGTACTGTAAAGGGTT	59.670	43.478	23.44	0.00	0.00	4.11
2409	3263	4.224370	ACAGGATACGTACCACCATCTTTT	59.776	41.667	14.11	0.00	46.39	2.27
2516	3373	5.764192	TGTACAAAACGCCCTTACAAAGTAT	59.236	36.000	0.00	0.00	0.00	2.12
2646	3503	6.918892	AAACAAAACAAGACAAAATAGGCC	57.081	33.333	0.00	0.00	0.00	5.19
2784	3766	2.557924	TGCGAAAATGCACATCTTTCCT	59.442	40.909	0.00	0.00	40.62	3.36

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.