Multiple sequence alignment - TraesCS7B01G332300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G332300 chr7B 100.000 5035 0 0 1 5035 587919057 587914023 0.000000e+00 9299.0
1 TraesCS7B01G332300 chr7B 93.514 185 12 0 1889 2073 443456803 443456619 4.970000e-70 276.0
2 TraesCS7B01G332300 chr7B 93.514 185 12 0 1889 2073 558024842 558025026 4.970000e-70 276.0
3 TraesCS7B01G332300 chr7B 83.478 115 15 3 90 202 10928353 10928465 2.480000e-18 104.0
4 TraesCS7B01G332300 chr7B 87.500 80 8 2 3385 3463 171992346 171992424 1.930000e-14 91.6
5 TraesCS7B01G332300 chr7B 87.179 78 7 3 3378 3454 181357749 181357674 8.980000e-13 86.1
6 TraesCS7B01G332300 chr7B 79.528 127 15 6 3345 3461 356479277 356479152 4.180000e-11 80.5
7 TraesCS7B01G332300 chr7A 89.447 1592 98 30 3467 5029 625743575 625742025 0.000000e+00 1945.0
8 TraesCS7B01G332300 chr7A 92.129 1245 66 16 2075 3300 625744910 625743679 0.000000e+00 1727.0
9 TraesCS7B01G332300 chr7A 86.292 1262 106 22 643 1887 625746115 625744904 0.000000e+00 1310.0
10 TraesCS7B01G332300 chr7A 82.677 127 16 6 76 197 716253783 716253658 1.920000e-19 108.0
11 TraesCS7B01G332300 chr7A 89.362 47 5 0 33 79 716251924 716251878 5.440000e-05 60.2
12 TraesCS7B01G332300 chr7D 89.088 1448 86 35 3484 4890 544473171 544471755 0.000000e+00 1733.0
13 TraesCS7B01G332300 chr7D 92.620 1206 51 16 2073 3263 544474458 544473276 0.000000e+00 1700.0
14 TraesCS7B01G332300 chr7D 88.496 1243 85 21 677 1887 544475666 544474450 0.000000e+00 1450.0
15 TraesCS7B01G332300 chr7D 95.604 182 8 0 1892 2073 414518849 414518668 4.930000e-75 292.0
16 TraesCS7B01G332300 chr7D 89.100 211 16 3 4825 5035 544471690 544471487 6.470000e-64 255.0
17 TraesCS7B01G332300 chr7D 95.455 66 3 0 4825 4890 544471755 544471690 6.890000e-19 106.0
18 TraesCS7B01G332300 chr5D 82.692 676 80 20 1 645 390128721 390129390 2.630000e-157 566.0
19 TraesCS7B01G332300 chr5D 93.514 185 12 0 1889 2073 155845089 155844905 4.970000e-70 276.0
20 TraesCS7B01G332300 chr2B 80.431 557 66 18 120 647 542351384 542350842 7.910000e-103 385.0
21 TraesCS7B01G332300 chr2B 93.514 185 12 0 1889 2073 150654843 150655027 4.970000e-70 276.0
22 TraesCS7B01G332300 chr2B 93.514 185 12 0 1889 2073 778343955 778344139 4.970000e-70 276.0
23 TraesCS7B01G332300 chr2B 79.339 121 14 6 3345 3455 242020800 242020919 1.940000e-09 75.0
24 TraesCS7B01G332300 chr5B 77.523 654 93 28 8 647 489308670 489308057 1.340000e-90 344.0
25 TraesCS7B01G332300 chr5B 79.688 128 14 7 3345 3461 425482772 425482646 1.160000e-11 82.4
26 TraesCS7B01G332300 chr3D 90.588 255 21 3 1 254 607900542 607900794 8.080000e-88 335.0
27 TraesCS7B01G332300 chr3D 90.234 256 22 3 1 254 540884750 540885004 1.040000e-86 331.0
28 TraesCS7B01G332300 chr3D 83.562 73 11 1 8 79 468435564 468435636 3.250000e-07 67.6
29 TraesCS7B01G332300 chr4D 86.667 270 24 12 5 268 108631661 108631398 6.380000e-74 289.0
30 TraesCS7B01G332300 chr4D 84.146 82 11 2 3375 3455 148697265 148697345 1.500000e-10 78.7
31 TraesCS7B01G332300 chr1D 94.054 185 11 0 1889 2073 488906588 488906404 1.070000e-71 281.0
32 TraesCS7B01G332300 chr1D 91.133 203 17 1 52 254 475240130 475239929 1.790000e-69 274.0
33 TraesCS7B01G332300 chrUn 94.022 184 11 0 1890 2073 67784928 67785111 3.840000e-71 279.0
34 TraesCS7B01G332300 chr3B 93.514 185 12 0 1889 2073 492335696 492335880 4.970000e-70 276.0
35 TraesCS7B01G332300 chr1B 81.679 131 20 4 78 205 681098709 681098838 6.890000e-19 106.0
36 TraesCS7B01G332300 chr6D 80.315 127 14 6 3345 3461 335426967 335426842 8.980000e-13 86.1
37 TraesCS7B01G332300 chr2D 80.165 121 13 6 3345 3455 214312566 214312685 4.180000e-11 80.5
38 TraesCS7B01G332300 chr6B 83.133 83 11 3 3375 3455 281493676 281493757 6.990000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G332300 chr7B 587914023 587919057 5034 True 9299.000000 9299 100.000000 1 5035 1 chr7B.!!$R4 5034
1 TraesCS7B01G332300 chr7A 625742025 625746115 4090 True 1660.666667 1945 89.289333 643 5029 3 chr7A.!!$R1 4386
2 TraesCS7B01G332300 chr7D 544471487 544475666 4179 True 1048.800000 1733 90.951800 677 5035 5 chr7D.!!$R2 4358
3 TraesCS7B01G332300 chr5D 390128721 390129390 669 False 566.000000 566 82.692000 1 645 1 chr5D.!!$F1 644
4 TraesCS7B01G332300 chr2B 542350842 542351384 542 True 385.000000 385 80.431000 120 647 1 chr2B.!!$R1 527
5 TraesCS7B01G332300 chr5B 489308057 489308670 613 True 344.000000 344 77.523000 8 647 1 chr5B.!!$R2 639

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
709 753 0.388907 TTAACGACGCGGCTAAAGCT 60.389 50.0 11.76 0.0 41.7 3.74 F
1558 1630 0.039617 TTGTCTTTTGGAATGCGCCG 60.040 50.0 4.18 0.0 0.0 6.46 F
3357 3457 0.034863 GTATTGCCCTCCGTCCCAAA 60.035 55.0 0.00 0.0 0.0 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2002 2083 0.030638 GCTTTTCTGACCAAAGCGCA 59.969 50.0 11.47 0.0 44.94 6.09 R
3437 3537 0.031111 AGTCCCTCCATCCCGAATCA 60.031 55.0 0.00 0.0 0.00 2.57 R
4519 4705 0.322816 ATGAAATGTGGACGCAGGCT 60.323 50.0 0.00 0.0 0.00 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 84 7.076842 ACACACTCAACATTACTGCATAATC 57.923 36.000 0.00 0.00 30.54 1.75
210 218 8.821147 ATACACACTAAACATTAAGTTCGTCA 57.179 30.769 0.00 0.00 40.26 4.35
288 308 4.503741 ACTTAACGCAACGTAGGTCTTA 57.496 40.909 0.00 0.00 39.99 2.10
289 309 4.479619 ACTTAACGCAACGTAGGTCTTAG 58.520 43.478 0.00 0.00 39.99 2.18
290 310 4.022849 ACTTAACGCAACGTAGGTCTTAGT 60.023 41.667 0.00 0.00 39.99 2.24
317 349 4.202367 GGTCGATCAATATCAAGGGGTCTT 60.202 45.833 0.00 0.00 31.93 3.01
334 366 0.741221 CTTGGGTTCTAGCCGTGCTC 60.741 60.000 1.46 0.00 40.44 4.26
335 367 2.180159 TTGGGTTCTAGCCGTGCTCC 62.180 60.000 1.46 0.00 40.44 4.70
337 369 2.572284 GTTCTAGCCGTGCTCCGT 59.428 61.111 1.46 0.00 40.44 4.69
341 374 1.374252 CTAGCCGTGCTCCGTGTTT 60.374 57.895 1.46 0.00 40.44 2.83
375 410 0.537828 AAAAGTTAAAGCGGGCCGGA 60.538 50.000 29.48 0.00 0.00 5.14
408 450 2.208431 TGTGCCCTTTGCGAATTTTTG 58.792 42.857 0.00 0.00 45.60 2.44
411 453 3.064682 GTGCCCTTTGCGAATTTTTGTTT 59.935 39.130 0.00 0.00 45.60 2.83
412 454 3.311048 TGCCCTTTGCGAATTTTTGTTTC 59.689 39.130 0.00 0.00 45.60 2.78
413 455 3.559655 GCCCTTTGCGAATTTTTGTTTCT 59.440 39.130 0.00 0.00 0.00 2.52
414 456 4.035091 GCCCTTTGCGAATTTTTGTTTCTT 59.965 37.500 0.00 0.00 0.00 2.52
415 457 5.448496 GCCCTTTGCGAATTTTTGTTTCTTT 60.448 36.000 0.00 0.00 0.00 2.52
416 458 6.238239 GCCCTTTGCGAATTTTTGTTTCTTTA 60.238 34.615 0.00 0.00 0.00 1.85
417 459 7.123190 CCCTTTGCGAATTTTTGTTTCTTTAC 58.877 34.615 0.00 0.00 0.00 2.01
488 530 2.163412 TGCAAAATGTCACTAATCCCGC 59.837 45.455 0.00 0.00 0.00 6.13
508 550 1.690209 CCCATCCTTTGCCACATGGAT 60.690 52.381 0.87 0.00 38.52 3.41
531 573 7.288621 GGATAATCCTTGTTTGGGAAATGATCT 59.711 37.037 0.00 0.00 36.37 2.75
536 578 5.477984 CCTTGTTTGGGAAATGATCTGAAGA 59.522 40.000 0.00 0.00 0.00 2.87
564 606 7.798071 TGATTTAGACGGGGATTACATAGTTT 58.202 34.615 0.00 0.00 0.00 2.66
579 621 4.464951 ACATAGTTTAGGGTGTCATCGACA 59.535 41.667 0.00 0.00 40.50 4.35
593 635 3.697542 TCATCGACAGGGATTTCGACTTA 59.302 43.478 0.00 0.00 46.41 2.24
609 651 4.069304 CGACTTAAGGGTTCATTTCACCA 58.931 43.478 7.53 0.00 35.80 4.17
619 661 4.825085 GGTTCATTTCACCAAACCTCTACA 59.175 41.667 0.00 0.00 38.48 2.74
622 664 4.518970 TCATTTCACCAAACCTCTACAAGC 59.481 41.667 0.00 0.00 0.00 4.01
647 689 7.710907 GCTCAGGGTTTAAAATGAACTTTTTCT 59.289 33.333 0.00 0.00 38.09 2.52
675 719 5.670149 TTCTGAGAATCGATACTACCGAC 57.330 43.478 0.00 0.00 38.97 4.79
709 753 0.388907 TTAACGACGCGGCTAAAGCT 60.389 50.000 11.76 0.00 41.70 3.74
752 796 2.869101 GCCCAATAAAGGCCCAAAAA 57.131 45.000 0.00 0.00 45.16 1.94
771 815 0.756070 AACCTAGAGGCGGTAGAGGC 60.756 60.000 0.00 0.00 39.32 4.70
787 831 3.650950 GCCTCCCTGACCCAAGCA 61.651 66.667 0.00 0.00 0.00 3.91
900 944 3.937151 GCGAAAGAGAGAAACGCAG 57.063 52.632 0.00 0.00 46.75 5.18
905 963 0.681733 AAGAGAGAAACGCAGCTCCA 59.318 50.000 0.00 0.00 0.00 3.86
906 964 0.681733 AGAGAGAAACGCAGCTCCAA 59.318 50.000 0.00 0.00 0.00 3.53
907 965 1.074752 GAGAGAAACGCAGCTCCAAG 58.925 55.000 0.00 0.00 0.00 3.61
911 969 3.825160 AAACGCAGCTCCAAGCCGA 62.825 57.895 4.93 0.00 43.77 5.54
914 972 4.087892 GCAGCTCCAAGCCGAGGA 62.088 66.667 0.00 0.00 43.77 3.71
916 974 2.284258 AGCTCCAAGCCGAGGACT 60.284 61.111 0.00 0.00 43.77 3.85
919 977 2.683933 TCCAAGCCGAGGACTCCC 60.684 66.667 0.00 0.00 0.00 4.30
1121 1181 4.724022 GGTAGTATGCCGACGGTG 57.276 61.111 16.73 0.00 0.00 4.94
1122 1182 1.066918 GGTAGTATGCCGACGGTGG 59.933 63.158 16.73 0.00 0.00 4.61
1123 1183 1.669999 GGTAGTATGCCGACGGTGGT 61.670 60.000 16.73 4.43 0.00 4.16
1124 1184 1.024271 GTAGTATGCCGACGGTGGTA 58.976 55.000 16.73 3.41 0.00 3.25
1125 1185 1.002033 GTAGTATGCCGACGGTGGTAG 60.002 57.143 16.73 0.00 0.00 3.18
1126 1186 0.682209 AGTATGCCGACGGTGGTAGT 60.682 55.000 16.73 6.33 0.00 2.73
1127 1187 1.024271 GTATGCCGACGGTGGTAGTA 58.976 55.000 16.73 0.00 0.00 1.82
1128 1188 1.610522 GTATGCCGACGGTGGTAGTAT 59.389 52.381 16.73 2.15 0.00 2.12
1129 1189 0.387929 ATGCCGACGGTGGTAGTATG 59.612 55.000 16.73 0.00 0.00 2.39
1130 1190 1.590792 GCCGACGGTGGTAGTATGC 60.591 63.158 16.73 0.00 0.00 3.14
1133 1193 1.556564 CGACGGTGGTAGTATGCTTG 58.443 55.000 0.00 0.00 0.00 4.01
1171 1231 4.160635 GTCCGGCGCGATTGGTTG 62.161 66.667 12.10 0.00 0.00 3.77
1212 1272 2.555199 GTGTTAGGTAGCAGCAGATGG 58.445 52.381 0.00 0.00 0.00 3.51
1345 1405 5.354792 TGCTTGTTTTGTTAGGTTTAGTCGT 59.645 36.000 0.00 0.00 0.00 4.34
1379 1439 3.806380 AGTGCTCATGGATGATCAGAAC 58.194 45.455 0.09 0.00 34.06 3.01
1384 1444 4.691175 CTCATGGATGATCAGAACGAGTT 58.309 43.478 0.09 0.00 36.02 3.01
1433 1493 0.817229 GAGGCACTAGATTGCAGGGC 60.817 60.000 7.55 0.00 44.94 5.19
1439 1499 0.250209 CTAGATTGCAGGGCGAGCAT 60.250 55.000 3.30 0.00 42.33 3.79
1449 1509 3.066760 GCAGGGCGAGCATTTTAATTAGT 59.933 43.478 0.00 0.00 0.00 2.24
1507 1567 0.394899 AGGCTATGTGCAAGCTTCCC 60.395 55.000 8.68 0.00 45.15 3.97
1558 1630 0.039617 TTGTCTTTTGGAATGCGCCG 60.040 50.000 4.18 0.00 0.00 6.46
1578 1650 5.119694 GCCGATCTGTTCCTAGAAGAAATT 58.880 41.667 0.00 0.00 0.00 1.82
1606 1678 1.200948 GGCCTGCTTTGTTCATGAGAC 59.799 52.381 0.00 0.00 0.00 3.36
1639 1718 3.118592 AGCTTGTCCCTGCTGTAGATTAC 60.119 47.826 0.00 0.00 38.21 1.89
1643 1722 3.056107 TGTCCCTGCTGTAGATTACACAC 60.056 47.826 0.00 0.00 34.46 3.82
1644 1723 2.500098 TCCCTGCTGTAGATTACACACC 59.500 50.000 0.00 0.00 34.46 4.16
1646 1725 3.525537 CCTGCTGTAGATTACACACCTG 58.474 50.000 0.00 0.00 34.46 4.00
1647 1726 3.525537 CTGCTGTAGATTACACACCTGG 58.474 50.000 0.00 0.00 34.46 4.45
1648 1727 2.903784 TGCTGTAGATTACACACCTGGT 59.096 45.455 0.00 0.00 34.46 4.00
1650 1729 4.714802 TGCTGTAGATTACACACCTGGTAT 59.285 41.667 0.00 0.00 34.46 2.73
1656 1736 8.595421 TGTAGATTACACACCTGGTATTTTGTA 58.405 33.333 0.00 2.52 32.89 2.41
1663 1743 5.411669 CACACCTGGTATTTTGTAAGAGGAC 59.588 44.000 0.00 0.00 0.00 3.85
1664 1744 5.072600 ACACCTGGTATTTTGTAAGAGGACA 59.927 40.000 0.00 0.00 0.00 4.02
1671 1751 5.843019 ATTTTGTAAGAGGACAAGGGAGA 57.157 39.130 0.00 0.00 40.31 3.71
1683 1763 7.289084 AGAGGACAAGGGAGAATTATCTTACTC 59.711 40.741 0.00 0.00 35.54 2.59
1699 1780 9.658799 TTATCTTACTCATTGGAGAAGAAACTG 57.341 33.333 0.00 0.00 44.26 3.16
1702 1783 8.088981 TCTTACTCATTGGAGAAGAAACTGTAC 58.911 37.037 0.00 0.00 44.26 2.90
1703 1784 5.552178 ACTCATTGGAGAAGAAACTGTACC 58.448 41.667 0.00 0.00 44.26 3.34
1715 1796 6.205101 AGAAACTGTACCCGTTATCTGTAG 57.795 41.667 0.00 0.00 0.00 2.74
1716 1797 4.382345 AACTGTACCCGTTATCTGTAGC 57.618 45.455 0.00 0.00 0.00 3.58
1748 1829 4.759693 TGGTAGGCATGTTTAGTTGAACAG 59.240 41.667 0.00 0.00 42.28 3.16
1754 1835 6.265196 AGGCATGTTTAGTTGAACAGAAATGA 59.735 34.615 0.00 0.00 42.28 2.57
1802 1883 2.287069 CCAGATACTCCGTTAGCTGACG 60.287 54.545 22.91 22.91 42.43 4.35
1814 1895 4.501921 CGTTAGCTGACGATTAAACCCTAC 59.498 45.833 25.25 0.00 45.47 3.18
1815 1896 5.413499 GTTAGCTGACGATTAAACCCTACA 58.587 41.667 0.00 0.00 0.00 2.74
1832 1913 1.972872 ACACAGAGGGAAACTTGCTG 58.027 50.000 0.00 0.00 0.00 4.41
1880 1961 4.378459 GCAACTGTACTTGTAGCACATTCC 60.378 45.833 0.00 0.00 0.00 3.01
1881 1962 4.891992 ACTGTACTTGTAGCACATTCCT 57.108 40.909 0.00 0.00 0.00 3.36
1882 1963 4.569943 ACTGTACTTGTAGCACATTCCTG 58.430 43.478 0.00 0.00 0.00 3.86
1883 1964 3.935203 CTGTACTTGTAGCACATTCCTGG 59.065 47.826 0.00 0.00 0.00 4.45
1884 1965 2.496899 ACTTGTAGCACATTCCTGGG 57.503 50.000 0.00 0.00 0.00 4.45
1885 1966 1.985159 ACTTGTAGCACATTCCTGGGA 59.015 47.619 0.00 0.00 0.00 4.37
1886 1967 2.375174 ACTTGTAGCACATTCCTGGGAA 59.625 45.455 4.43 4.43 38.59 3.97
1887 1968 2.787473 TGTAGCACATTCCTGGGAAG 57.213 50.000 8.11 3.46 37.56 3.46
1888 1969 1.985159 TGTAGCACATTCCTGGGAAGT 59.015 47.619 8.11 4.01 37.56 3.01
1889 1970 2.027192 TGTAGCACATTCCTGGGAAGTC 60.027 50.000 8.11 0.00 37.56 3.01
1890 1971 1.067295 AGCACATTCCTGGGAAGTCA 58.933 50.000 8.11 0.00 37.56 3.41
1891 1972 1.637553 AGCACATTCCTGGGAAGTCAT 59.362 47.619 8.11 0.00 37.56 3.06
1892 1973 2.846206 AGCACATTCCTGGGAAGTCATA 59.154 45.455 8.11 0.00 37.56 2.15
1893 1974 3.118112 AGCACATTCCTGGGAAGTCATAG 60.118 47.826 8.11 0.00 37.56 2.23
1894 1975 3.370953 GCACATTCCTGGGAAGTCATAGT 60.371 47.826 8.11 0.00 37.56 2.12
1895 1976 4.848357 CACATTCCTGGGAAGTCATAGTT 58.152 43.478 8.11 0.00 37.56 2.24
1896 1977 5.629133 GCACATTCCTGGGAAGTCATAGTTA 60.629 44.000 8.11 0.00 37.56 2.24
1897 1978 6.414732 CACATTCCTGGGAAGTCATAGTTAA 58.585 40.000 8.11 0.00 37.56 2.01
1898 1979 6.884295 CACATTCCTGGGAAGTCATAGTTAAA 59.116 38.462 8.11 0.00 37.56 1.52
1899 1980 7.393234 CACATTCCTGGGAAGTCATAGTTAAAA 59.607 37.037 8.11 0.00 37.56 1.52
1900 1981 7.947890 ACATTCCTGGGAAGTCATAGTTAAAAA 59.052 33.333 8.11 0.00 37.56 1.94
1936 2017 3.410958 GCTTAAGTGCGCCTAGGC 58.589 61.111 24.75 24.75 37.85 3.93
1937 2018 1.153349 GCTTAAGTGCGCCTAGGCT 60.153 57.895 30.55 14.71 39.32 4.58
1938 2019 1.154814 GCTTAAGTGCGCCTAGGCTC 61.155 60.000 30.55 24.16 39.32 4.70
1939 2020 0.461961 CTTAAGTGCGCCTAGGCTCT 59.538 55.000 30.55 21.51 38.30 4.09
1940 2021 1.681793 CTTAAGTGCGCCTAGGCTCTA 59.318 52.381 30.55 14.20 35.86 2.43
1941 2022 1.319541 TAAGTGCGCCTAGGCTCTAG 58.680 55.000 30.55 16.51 35.86 2.43
1942 2023 1.395826 AAGTGCGCCTAGGCTCTAGG 61.396 60.000 30.55 16.12 35.86 3.02
1947 2028 4.824090 CCTAGGCTCTAGGCGCTA 57.176 61.111 7.64 0.00 46.23 4.26
1948 2029 2.562125 CCTAGGCTCTAGGCGCTAG 58.438 63.158 7.64 7.46 46.23 3.42
1949 2030 1.591504 CCTAGGCTCTAGGCGCTAGC 61.592 65.000 7.64 4.06 46.23 3.42
1959 2040 3.481661 GCGCTAGCAAAACGCCTA 58.518 55.556 16.45 0.00 46.63 3.93
1960 2041 1.348594 GCGCTAGCAAAACGCCTAG 59.651 57.895 16.45 0.00 46.63 3.02
1961 2042 1.348594 CGCTAGCAAAACGCCTAGC 59.651 57.895 16.45 9.07 44.04 3.42
1983 2064 4.041240 GCATAACTGCGCTTAATCTACG 57.959 45.455 9.73 0.00 38.92 3.51
2016 2097 3.266964 GCATGCGCTTTGGTCAGA 58.733 55.556 9.73 0.00 34.30 3.27
2017 2098 1.580942 GCATGCGCTTTGGTCAGAA 59.419 52.632 9.73 0.00 34.30 3.02
2018 2099 0.039256 GCATGCGCTTTGGTCAGAAA 60.039 50.000 9.73 0.00 34.30 2.52
2019 2100 1.602668 GCATGCGCTTTGGTCAGAAAA 60.603 47.619 9.73 0.00 34.30 2.29
2020 2101 2.322161 CATGCGCTTTGGTCAGAAAAG 58.678 47.619 9.73 0.00 37.63 2.27
2027 2108 3.709987 CTTTGGTCAGAAAAGCACAAGG 58.290 45.455 0.00 0.00 0.00 3.61
2028 2109 1.032014 TGGTCAGAAAAGCACAAGGC 58.968 50.000 0.00 0.00 45.30 4.35
2037 2118 3.910490 GCACAAGGCGGTGGCAAA 61.910 61.111 12.98 0.00 42.47 3.68
2038 2119 2.811101 CACAAGGCGGTGGCAAAA 59.189 55.556 4.67 0.00 42.47 2.44
2039 2120 1.367102 CACAAGGCGGTGGCAAAAT 59.633 52.632 4.67 0.00 42.47 1.82
2040 2121 0.945265 CACAAGGCGGTGGCAAAATG 60.945 55.000 4.67 0.00 42.47 2.32
2041 2122 2.028733 CAAGGCGGTGGCAAAATGC 61.029 57.895 0.00 0.00 44.08 3.56
2054 2135 4.950434 GCAAAATGCACAATTAATGCCT 57.050 36.364 10.50 0.00 44.26 4.75
2056 2137 6.039781 GCAAAATGCACAATTAATGCCTAG 57.960 37.500 10.50 0.00 44.26 3.02
2057 2138 5.502869 GCAAAATGCACAATTAATGCCTAGC 60.503 40.000 10.50 5.29 44.26 3.42
2058 2139 3.631145 ATGCACAATTAATGCCTAGCG 57.369 42.857 10.50 0.00 42.69 4.26
2059 2140 1.065401 TGCACAATTAATGCCTAGCGC 59.935 47.619 0.00 0.00 42.69 5.92
2060 2141 1.334869 GCACAATTAATGCCTAGCGCT 59.665 47.619 17.26 17.26 37.08 5.92
2061 2142 2.223572 GCACAATTAATGCCTAGCGCTT 60.224 45.455 18.68 0.00 37.08 4.68
2062 2143 3.734902 GCACAATTAATGCCTAGCGCTTT 60.735 43.478 18.68 5.74 37.08 3.51
2063 2144 4.423732 CACAATTAATGCCTAGCGCTTTT 58.576 39.130 18.68 4.85 38.78 2.27
2064 2145 4.864247 CACAATTAATGCCTAGCGCTTTTT 59.136 37.500 18.68 5.22 38.78 1.94
2096 2177 5.188751 TCCTGGGAACTGTTTGATTTTGTTT 59.811 36.000 0.00 0.00 0.00 2.83
2129 2210 2.095364 CCTCAGTGCTGCATTTCTGTTC 60.095 50.000 15.57 0.00 0.00 3.18
2183 2264 1.903183 GCTGGAGTTCCTGGAGTTACT 59.097 52.381 0.00 0.00 35.73 2.24
2192 2273 1.480137 CCTGGAGTTACTGAGGCTCTG 59.520 57.143 18.54 18.54 0.00 3.35
2225 2306 4.134563 GACAAACTGTTTTAGCAGAGGGA 58.865 43.478 2.41 0.00 39.62 4.20
2237 2318 1.552792 GCAGAGGGAAGCAACTCTACT 59.447 52.381 0.00 0.00 41.90 2.57
2282 2363 1.408702 TGTGCTCTTTGTGGAAAAGGC 59.591 47.619 0.00 2.31 0.00 4.35
2321 2402 0.700564 ATGCCCAACATCTCACCACT 59.299 50.000 0.00 0.00 31.52 4.00
2433 2514 2.950309 CCCTCTGCAATGGAAGAAGATG 59.050 50.000 6.24 0.00 0.00 2.90
2434 2515 3.371273 CCCTCTGCAATGGAAGAAGATGA 60.371 47.826 6.24 0.00 0.00 2.92
2435 2516 4.267536 CCTCTGCAATGGAAGAAGATGAA 58.732 43.478 0.00 0.00 0.00 2.57
2436 2517 4.335874 CCTCTGCAATGGAAGAAGATGAAG 59.664 45.833 0.00 0.00 0.00 3.02
2437 2518 5.169992 TCTGCAATGGAAGAAGATGAAGA 57.830 39.130 0.00 0.00 0.00 2.87
2438 2519 5.752650 TCTGCAATGGAAGAAGATGAAGAT 58.247 37.500 0.00 0.00 0.00 2.40
2578 2659 1.633432 TGAAATGTTGGATCCCTCGGT 59.367 47.619 9.90 0.00 0.00 4.69
2993 3074 5.510671 CAGGTTTGTACTGTGCTAAACTTG 58.489 41.667 7.76 12.24 35.05 3.16
2995 3076 6.259167 CAGGTTTGTACTGTGCTAAACTTGTA 59.741 38.462 7.76 0.00 36.19 2.41
2996 3077 6.259387 AGGTTTGTACTGTGCTAAACTTGTAC 59.741 38.462 4.97 0.00 38.60 2.90
2998 3079 6.838198 TTGTACTGTGCTAAACTTGTACTG 57.162 37.500 0.00 0.00 38.75 2.74
3042 3134 4.827284 ACCACCTTCTTGTTTCCTGTAATG 59.173 41.667 0.00 0.00 0.00 1.90
3091 3185 1.075659 AGTTTGGGCTTCTGAGGGC 59.924 57.895 4.68 4.68 0.00 5.19
3097 3191 0.967887 GGGCTTCTGAGGGCCTTTTC 60.968 60.000 22.73 0.00 46.80 2.29
3098 3192 0.038890 GGCTTCTGAGGGCCTTTTCT 59.961 55.000 7.89 0.00 44.48 2.52
3183 3279 1.100463 TCTTTGCGTTGGCTCTTGCA 61.100 50.000 0.00 0.00 41.91 4.08
3207 3303 4.508461 TCTGTTGTTCCATGAATGCTTG 57.492 40.909 0.00 0.00 0.00 4.01
3227 3327 1.471684 GGAAGCAGGAATGCTGTTGAG 59.528 52.381 3.09 0.00 45.54 3.02
3237 3337 7.415541 GCAGGAATGCTGTTGAGAATTGTATTA 60.416 37.037 3.24 0.00 25.93 0.98
3264 3364 8.420222 TGTTAATTAGCCATTTATGTTGGGATG 58.580 33.333 0.00 0.00 34.66 3.51
3265 3365 6.423776 AATTAGCCATTTATGTTGGGATGG 57.576 37.500 0.00 0.00 41.53 3.51
3269 3369 4.080975 AGCCATTTATGTTGGGATGGTTTG 60.081 41.667 0.00 0.00 40.87 2.93
3272 3372 4.881019 TTTATGTTGGGATGGTTTGTGG 57.119 40.909 0.00 0.00 0.00 4.17
3284 3384 6.463755 GGGATGGTTTGTGGACAAAAGTAAAT 60.464 38.462 6.52 0.00 46.08 1.40
3285 3385 7.256012 GGGATGGTTTGTGGACAAAAGTAAATA 60.256 37.037 6.52 0.00 46.08 1.40
3322 3422 9.834628 TGCTTAATGGTTTTAATAGTTTCTTCG 57.165 29.630 0.00 0.00 0.00 3.79
3333 3433 3.821421 AGTTTCTTCGTCTGTCCACTT 57.179 42.857 0.00 0.00 0.00 3.16
3337 3437 6.289064 AGTTTCTTCGTCTGTCCACTTAATT 58.711 36.000 0.00 0.00 0.00 1.40
3338 3438 6.202954 AGTTTCTTCGTCTGTCCACTTAATTG 59.797 38.462 0.00 0.00 0.00 2.32
3341 3441 6.931838 TCTTCGTCTGTCCACTTAATTGTAT 58.068 36.000 0.00 0.00 0.00 2.29
3343 3443 6.961359 TCGTCTGTCCACTTAATTGTATTG 57.039 37.500 0.00 0.00 0.00 1.90
3344 3444 5.350365 TCGTCTGTCCACTTAATTGTATTGC 59.650 40.000 0.00 0.00 0.00 3.56
3346 3446 4.947388 TCTGTCCACTTAATTGTATTGCCC 59.053 41.667 0.00 0.00 0.00 5.36
3348 3448 4.947388 TGTCCACTTAATTGTATTGCCCTC 59.053 41.667 0.00 0.00 0.00 4.30
3349 3449 4.338400 GTCCACTTAATTGTATTGCCCTCC 59.662 45.833 0.00 0.00 0.00 4.30
3350 3450 3.315191 CCACTTAATTGTATTGCCCTCCG 59.685 47.826 0.00 0.00 0.00 4.63
3351 3451 3.945285 CACTTAATTGTATTGCCCTCCGT 59.055 43.478 0.00 0.00 0.00 4.69
3352 3452 4.035208 CACTTAATTGTATTGCCCTCCGTC 59.965 45.833 0.00 0.00 0.00 4.79
3354 3454 0.182775 ATTGTATTGCCCTCCGTCCC 59.817 55.000 0.00 0.00 0.00 4.46
3355 3455 1.202099 TTGTATTGCCCTCCGTCCCA 61.202 55.000 0.00 0.00 0.00 4.37
3356 3456 1.202099 TGTATTGCCCTCCGTCCCAA 61.202 55.000 0.00 0.00 0.00 4.12
3357 3457 0.034863 GTATTGCCCTCCGTCCCAAA 60.035 55.000 0.00 0.00 0.00 3.28
3358 3458 0.923358 TATTGCCCTCCGTCCCAAAT 59.077 50.000 0.00 0.00 0.00 2.32
3359 3459 0.041090 ATTGCCCTCCGTCCCAAATT 59.959 50.000 0.00 0.00 0.00 1.82
3360 3460 0.699399 TTGCCCTCCGTCCCAAATTA 59.301 50.000 0.00 0.00 0.00 1.40
3361 3461 0.254747 TGCCCTCCGTCCCAAATTAG 59.745 55.000 0.00 0.00 0.00 1.73
3362 3462 0.255033 GCCCTCCGTCCCAAATTAGT 59.745 55.000 0.00 0.00 0.00 2.24
3363 3463 1.340697 GCCCTCCGTCCCAAATTAGTT 60.341 52.381 0.00 0.00 0.00 2.24
3364 3464 2.365582 CCCTCCGTCCCAAATTAGTTG 58.634 52.381 0.00 0.00 36.94 3.16
3365 3465 2.290705 CCCTCCGTCCCAAATTAGTTGT 60.291 50.000 0.00 0.00 35.23 3.32
3366 3466 3.007635 CCTCCGTCCCAAATTAGTTGTC 58.992 50.000 0.00 0.00 35.23 3.18
3367 3467 3.307480 CCTCCGTCCCAAATTAGTTGTCT 60.307 47.826 0.00 0.00 35.23 3.41
3368 3468 4.324267 CTCCGTCCCAAATTAGTTGTCTT 58.676 43.478 0.00 0.00 35.23 3.01
3369 3469 5.484715 CTCCGTCCCAAATTAGTTGTCTTA 58.515 41.667 0.00 0.00 35.23 2.10
3370 3470 5.484715 TCCGTCCCAAATTAGTTGTCTTAG 58.515 41.667 0.00 0.00 35.23 2.18
3371 3471 5.012354 TCCGTCCCAAATTAGTTGTCTTAGT 59.988 40.000 0.00 0.00 35.23 2.24
3372 3472 5.121768 CCGTCCCAAATTAGTTGTCTTAGTG 59.878 44.000 0.00 0.00 35.23 2.74
3373 3473 5.699458 CGTCCCAAATTAGTTGTCTTAGTGT 59.301 40.000 0.00 0.00 35.23 3.55
3374 3474 6.204108 CGTCCCAAATTAGTTGTCTTAGTGTT 59.796 38.462 0.00 0.00 35.23 3.32
3375 3475 7.385752 CGTCCCAAATTAGTTGTCTTAGTGTTA 59.614 37.037 0.00 0.00 35.23 2.41
3376 3476 8.718734 GTCCCAAATTAGTTGTCTTAGTGTTAG 58.281 37.037 0.00 0.00 35.23 2.34
3377 3477 7.881232 TCCCAAATTAGTTGTCTTAGTGTTAGG 59.119 37.037 0.00 0.00 35.23 2.69
3378 3478 7.120726 CCCAAATTAGTTGTCTTAGTGTTAGGG 59.879 40.741 0.00 0.00 35.23 3.53
3379 3479 7.881232 CCAAATTAGTTGTCTTAGTGTTAGGGA 59.119 37.037 0.00 0.00 35.23 4.20
3380 3480 8.936864 CAAATTAGTTGTCTTAGTGTTAGGGAG 58.063 37.037 0.00 0.00 32.08 4.30
3381 3481 7.793948 ATTAGTTGTCTTAGTGTTAGGGAGT 57.206 36.000 0.00 0.00 0.00 3.85
3382 3482 8.890410 ATTAGTTGTCTTAGTGTTAGGGAGTA 57.110 34.615 0.00 0.00 0.00 2.59
3383 3483 6.587206 AGTTGTCTTAGTGTTAGGGAGTAC 57.413 41.667 0.00 0.00 0.00 2.73
3384 3484 5.479724 AGTTGTCTTAGTGTTAGGGAGTACC 59.520 44.000 0.00 0.00 40.67 3.34
3398 3498 5.139435 GGGAGTACCTAACACTAAAACGT 57.861 43.478 0.00 0.00 35.85 3.99
3399 3499 4.925646 GGGAGTACCTAACACTAAAACGTG 59.074 45.833 0.00 0.00 37.30 4.49
3400 3500 5.509670 GGGAGTACCTAACACTAAAACGTGT 60.510 44.000 0.00 0.00 42.28 4.49
3401 3501 5.403466 GGAGTACCTAACACTAAAACGTGTG 59.597 44.000 2.47 2.47 46.71 3.82
3402 3502 5.906073 AGTACCTAACACTAAAACGTGTGT 58.094 37.500 3.73 3.73 46.71 3.72
3403 3503 7.038154 AGTACCTAACACTAAAACGTGTGTA 57.962 36.000 9.50 0.00 46.71 2.90
3404 3504 7.141363 AGTACCTAACACTAAAACGTGTGTAG 58.859 38.462 9.50 4.66 46.71 2.74
3405 3505 6.147864 ACCTAACACTAAAACGTGTGTAGA 57.852 37.500 9.50 1.69 46.71 2.59
3406 3506 6.752168 ACCTAACACTAAAACGTGTGTAGAT 58.248 36.000 9.50 0.00 46.71 1.98
3407 3507 7.885297 ACCTAACACTAAAACGTGTGTAGATA 58.115 34.615 9.50 0.00 46.71 1.98
3408 3508 7.809806 ACCTAACACTAAAACGTGTGTAGATAC 59.190 37.037 9.50 0.00 46.71 2.24
3409 3509 7.809331 CCTAACACTAAAACGTGTGTAGATACA 59.191 37.037 9.50 0.00 46.71 2.29
3410 3510 9.350357 CTAACACTAAAACGTGTGTAGATACAT 57.650 33.333 9.50 0.00 46.71 2.29
3411 3511 7.807687 ACACTAAAACGTGTGTAGATACATC 57.192 36.000 7.55 0.00 45.74 3.06
3412 3512 6.810182 ACACTAAAACGTGTGTAGATACATCC 59.190 38.462 7.55 0.00 45.74 3.51
3413 3513 6.020916 CACTAAAACGTGTGTAGATACATCCG 60.021 42.308 7.26 10.71 38.63 4.18
3414 3514 4.445452 AAACGTGTGTAGATACATCCGT 57.555 40.909 11.65 11.65 42.77 4.69
3415 3515 5.565592 AAACGTGTGTAGATACATCCGTA 57.434 39.130 15.55 0.00 41.30 4.02
3416 3516 5.762825 AACGTGTGTAGATACATCCGTAT 57.237 39.130 15.55 7.63 41.30 3.06
3431 3531 9.698309 ATACATCCGTATCTTGACAAATCTAAG 57.302 33.333 0.00 0.00 32.66 2.18
3432 3532 7.782049 ACATCCGTATCTTGACAAATCTAAGA 58.218 34.615 0.00 0.00 35.19 2.10
3433 3533 7.707035 ACATCCGTATCTTGACAAATCTAAGAC 59.293 37.037 0.00 0.00 33.69 3.01
3434 3534 7.165460 TCCGTATCTTGACAAATCTAAGACA 57.835 36.000 0.00 0.00 33.69 3.41
3435 3535 7.608153 TCCGTATCTTGACAAATCTAAGACAA 58.392 34.615 0.00 0.00 33.69 3.18
3436 3536 8.258007 TCCGTATCTTGACAAATCTAAGACAAT 58.742 33.333 0.00 0.00 33.69 2.71
3437 3537 8.883731 CCGTATCTTGACAAATCTAAGACAATT 58.116 33.333 0.00 0.00 33.69 2.32
3438 3538 9.694520 CGTATCTTGACAAATCTAAGACAATTG 57.305 33.333 3.24 3.24 33.69 2.32
3443 3543 9.270576 CTTGACAAATCTAAGACAATTGATTCG 57.729 33.333 13.59 3.19 0.00 3.34
3444 3544 7.751732 TGACAAATCTAAGACAATTGATTCGG 58.248 34.615 13.59 4.12 0.00 4.30
3445 3545 7.088589 ACAAATCTAAGACAATTGATTCGGG 57.911 36.000 13.59 0.00 0.00 5.14
3446 3546 6.884295 ACAAATCTAAGACAATTGATTCGGGA 59.116 34.615 13.59 3.63 0.00 5.14
3447 3547 7.557719 ACAAATCTAAGACAATTGATTCGGGAT 59.442 33.333 13.59 5.73 0.00 3.85
3448 3548 7.502120 AATCTAAGACAATTGATTCGGGATG 57.498 36.000 13.59 0.00 0.00 3.51
3449 3549 5.368145 TCTAAGACAATTGATTCGGGATGG 58.632 41.667 13.59 0.00 0.00 3.51
3450 3550 3.931907 AGACAATTGATTCGGGATGGA 57.068 42.857 13.59 0.00 0.00 3.41
3451 3551 3.813443 AGACAATTGATTCGGGATGGAG 58.187 45.455 13.59 0.00 0.00 3.86
3452 3552 2.880890 GACAATTGATTCGGGATGGAGG 59.119 50.000 13.59 0.00 0.00 4.30
3453 3553 2.233271 CAATTGATTCGGGATGGAGGG 58.767 52.381 0.00 0.00 0.00 4.30
3454 3554 1.819753 ATTGATTCGGGATGGAGGGA 58.180 50.000 0.00 0.00 0.00 4.20
3455 3555 0.837272 TTGATTCGGGATGGAGGGAC 59.163 55.000 0.00 0.00 0.00 4.46
3457 3557 1.219469 TGATTCGGGATGGAGGGACTA 59.781 52.381 0.00 0.00 41.55 2.59
3460 3560 0.635009 TCGGGATGGAGGGACTAGTT 59.365 55.000 0.00 0.00 41.55 2.24
3464 3564 3.500654 CGGGATGGAGGGACTAGTTATCT 60.501 52.174 0.00 0.00 41.55 1.98
3500 3600 6.759497 AAGTACTCCTTTAATGGTGAATGC 57.241 37.500 14.44 0.12 0.00 3.56
3501 3601 5.815581 AGTACTCCTTTAATGGTGAATGCA 58.184 37.500 14.44 0.00 0.00 3.96
3519 3669 1.004595 CATGGAGTCTGCACACATCG 58.995 55.000 0.00 0.00 0.00 3.84
3531 3681 3.000041 GCACACATCGAACACCTAATGA 59.000 45.455 0.00 0.00 0.00 2.57
3539 3689 5.408880 TCGAACACCTAATGACATGGTTA 57.591 39.130 0.00 0.00 30.72 2.85
3541 3691 5.815222 TCGAACACCTAATGACATGGTTATG 59.185 40.000 0.00 0.00 40.24 1.90
3572 3722 1.133976 AGCTATGTTGATGTGGAGGGC 60.134 52.381 0.00 0.00 0.00 5.19
3579 3729 1.001641 GATGTGGAGGGCAAGCAGT 60.002 57.895 0.00 0.00 0.00 4.40
3629 3779 1.715019 TTGAACTGGGAGGTGGTGGG 61.715 60.000 0.00 0.00 0.00 4.61
3725 3875 3.296709 CTACCGCCAGAAGCCACGT 62.297 63.158 0.00 0.00 38.78 4.49
3783 3933 0.106967 GGCTTCCAGGTCTGAATCCC 60.107 60.000 0.00 0.00 0.00 3.85
3819 3969 7.210174 TCCTATCCATTCAAGTATCTTTGTCG 58.790 38.462 0.00 0.00 0.00 4.35
3851 4008 2.808543 GCCGAGACCCTTATGCTTAATG 59.191 50.000 0.00 0.00 0.00 1.90
3861 4027 4.498009 CCTTATGCTTAATGGCGTTTCTGG 60.498 45.833 0.00 0.00 33.19 3.86
4046 4212 2.436469 TACTAGTCGCGACGCCCA 60.436 61.111 31.56 16.81 36.20 5.36
4104 4272 0.525668 CACTACTTACTGCCCTCGCG 60.526 60.000 0.00 0.00 38.08 5.87
4191 4366 1.341531 GGCTGCTGGTATCGACACTAT 59.658 52.381 0.00 0.00 0.00 2.12
4201 4376 7.866393 GCTGGTATCGACACTATTATTTACACT 59.134 37.037 0.00 0.00 0.00 3.55
4203 4378 7.650504 TGGTATCGACACTATTATTTACACTGC 59.349 37.037 0.00 0.00 0.00 4.40
4204 4379 7.650504 GGTATCGACACTATTATTTACACTGCA 59.349 37.037 0.00 0.00 0.00 4.41
4233 4408 5.419155 CCAGTTGAACCTATGACTAGTCTCA 59.581 44.000 23.01 14.14 0.00 3.27
4237 4412 5.519808 TGAACCTATGACTAGTCTCATGGT 58.480 41.667 23.01 20.04 35.39 3.55
4257 4432 3.369576 GGTGATGGGGAGACTGACTAAAC 60.370 52.174 0.00 0.00 0.00 2.01
4262 4437 4.684724 TGGGGAGACTGACTAAACTGTAT 58.315 43.478 0.00 0.00 0.00 2.29
4263 4438 4.466370 TGGGGAGACTGACTAAACTGTATG 59.534 45.833 0.00 0.00 0.00 2.39
4264 4439 4.434520 GGGAGACTGACTAAACTGTATGC 58.565 47.826 0.00 0.00 0.00 3.14
4265 4440 4.081642 GGGAGACTGACTAAACTGTATGCA 60.082 45.833 0.00 0.00 0.00 3.96
4267 4442 4.499183 AGACTGACTAAACTGTATGCAGC 58.501 43.478 11.09 0.00 46.30 5.25
4268 4443 3.254060 ACTGACTAAACTGTATGCAGCG 58.746 45.455 11.09 0.00 46.30 5.18
4269 4444 3.254060 CTGACTAAACTGTATGCAGCGT 58.746 45.455 11.09 3.25 46.30 5.07
4270 4445 4.082408 ACTGACTAAACTGTATGCAGCGTA 60.082 41.667 11.09 2.56 46.30 4.42
4272 4447 4.862574 TGACTAAACTGTATGCAGCGTAAG 59.137 41.667 11.09 6.17 46.30 2.34
4347 4525 0.647925 GAGCTTGAACGATCTTCGCC 59.352 55.000 0.00 0.00 45.12 5.54
4382 4560 1.071699 GGTGGACAGGTTGCTTCAGTA 59.928 52.381 0.00 0.00 0.00 2.74
4398 4581 2.165641 TCAGTATGATCCCACGTGACAC 59.834 50.000 19.30 6.11 42.56 3.67
4417 4600 4.330250 ACACTTGCAGATGAAATGTAGCT 58.670 39.130 6.30 0.00 0.00 3.32
4519 4705 7.786046 TTCTTCCACATACTAAACTCAGGTA 57.214 36.000 0.00 0.00 0.00 3.08
4558 4744 2.154567 ACCCGATGGCAGTAGAGTAA 57.845 50.000 0.00 0.00 33.59 2.24
4559 4745 2.032620 ACCCGATGGCAGTAGAGTAAG 58.967 52.381 0.00 0.00 33.59 2.34
4560 4746 2.307768 CCCGATGGCAGTAGAGTAAGA 58.692 52.381 0.00 0.00 0.00 2.10
4673 4867 0.824759 GTCAACCGTCTAGCCATCCT 59.175 55.000 0.00 0.00 0.00 3.24
4797 4993 4.204012 CATTCCCGGAGCAGGTTAATTTA 58.796 43.478 0.73 0.00 0.00 1.40
4800 4996 3.118519 TCCCGGAGCAGGTTAATTTACTC 60.119 47.826 0.73 0.00 0.00 2.59
4805 5001 3.869832 GAGCAGGTTAATTTACTCCCGTC 59.130 47.826 0.00 0.00 0.00 4.79
4877 5204 3.018423 ACATGGCCCTGTCCTTAATTC 57.982 47.619 8.00 0.00 0.00 2.17
4886 5213 5.652452 GCCCTGTCCTTAATTCAACAGTAAT 59.348 40.000 0.00 0.00 37.92 1.89
4908 5235 7.994425 AATGTTATGACAACATCTACAACCA 57.006 32.000 3.30 0.00 39.73 3.67
4926 5253 1.285962 CCAGACCATCCAAATCACCCT 59.714 52.381 0.00 0.00 0.00 4.34
4949 5276 2.859992 GGCACCTCAAACTGGCTAG 58.140 57.895 0.00 0.00 0.00 3.42
4950 5277 0.036875 GGCACCTCAAACTGGCTAGT 59.963 55.000 0.00 0.00 39.32 2.57
4967 5294 5.105473 TGGCTAGTTCTATATATGTTCGGGC 60.105 44.000 0.00 0.00 0.00 6.13
4988 5315 3.076217 TTCGGCACCCCCAAAACCT 62.076 57.895 0.00 0.00 0.00 3.50
5004 5331 2.118403 ACCTAGTCCATATGTGGGGG 57.882 55.000 8.84 8.53 46.06 5.40
5029 5356 1.134431 CCGGACACATCCATCATGTCA 60.134 52.381 0.00 0.00 44.60 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
270 290 4.503741 AACTAAGACCTACGTTGCGTTA 57.496 40.909 0.00 0.00 41.54 3.18
271 291 3.375782 AACTAAGACCTACGTTGCGTT 57.624 42.857 0.00 0.00 41.54 4.84
288 308 5.126067 CCTTGATATTGATCGACCCAAACT 58.874 41.667 6.22 0.00 34.49 2.66
289 309 4.275936 CCCTTGATATTGATCGACCCAAAC 59.724 45.833 6.22 3.21 34.49 2.93
290 310 4.460263 CCCTTGATATTGATCGACCCAAA 58.540 43.478 6.22 0.00 34.49 3.28
317 349 2.656069 GGAGCACGGCTAGAACCCA 61.656 63.158 0.00 0.00 39.88 4.51
348 381 4.444388 GCCCGCTTTAACTTTTTCTTTCAG 59.556 41.667 0.00 0.00 0.00 3.02
350 383 3.739300 GGCCCGCTTTAACTTTTTCTTTC 59.261 43.478 0.00 0.00 0.00 2.62
353 386 1.268625 CGGCCCGCTTTAACTTTTTCT 59.731 47.619 0.00 0.00 0.00 2.52
361 396 3.615509 CTGGTCCGGCCCGCTTTAA 62.616 63.158 11.72 0.00 36.04 1.52
390 425 2.611225 ACAAAAATTCGCAAAGGGCA 57.389 40.000 0.00 0.00 45.17 5.36
444 486 2.264794 CACACACCTACTCCCCGC 59.735 66.667 0.00 0.00 0.00 6.13
452 494 4.492604 GCAAAGGGCACACACCTA 57.507 55.556 0.00 0.00 43.97 3.08
476 518 0.399949 AGGATGGGCGGGATTAGTGA 60.400 55.000 0.00 0.00 0.00 3.41
488 530 0.324552 TCCATGTGGCAAAGGATGGG 60.325 55.000 13.26 0.00 36.72 4.00
508 550 7.181361 TCAGATCATTTCCCAAACAAGGATTA 58.819 34.615 0.00 0.00 32.10 1.75
531 573 5.429681 TCCCCGTCTAAATCAAATCTTCA 57.570 39.130 0.00 0.00 0.00 3.02
536 578 8.437575 ACTATGTAATCCCCGTCTAAATCAAAT 58.562 33.333 0.00 0.00 0.00 2.32
549 591 5.131475 TGACACCCTAAACTATGTAATCCCC 59.869 44.000 0.00 0.00 0.00 4.81
564 606 0.333652 TCCCTGTCGATGACACCCTA 59.666 55.000 0.00 0.00 37.67 3.53
579 621 3.585732 TGAACCCTTAAGTCGAAATCCCT 59.414 43.478 0.97 0.00 0.00 4.20
593 635 3.641436 GAGGTTTGGTGAAATGAACCCTT 59.359 43.478 0.00 0.00 41.90 3.95
609 651 2.339769 ACCCTGAGCTTGTAGAGGTTT 58.660 47.619 0.00 0.00 35.91 3.27
619 661 6.731292 AAGTTCATTTTAAACCCTGAGCTT 57.269 33.333 13.41 13.41 35.29 3.74
622 664 9.599866 AAGAAAAAGTTCATTTTAAACCCTGAG 57.400 29.630 0.00 0.00 40.27 3.35
647 689 9.459640 CGGTAGTATCGATTCTCAGAAAAATAA 57.540 33.333 7.92 0.00 0.00 1.40
651 693 6.493116 GTCGGTAGTATCGATTCTCAGAAAA 58.507 40.000 9.07 0.00 38.93 2.29
655 697 3.739810 TCGTCGGTAGTATCGATTCTCAG 59.260 47.826 9.07 2.01 38.93 3.35
675 719 2.095466 TCGTTAAAGCAAAGCCCATTCG 60.095 45.455 0.00 0.00 0.00 3.34
750 794 2.108970 CCTCTACCGCCTCTAGGTTTT 58.891 52.381 0.00 0.00 42.81 2.43
751 795 1.777941 CCTCTACCGCCTCTAGGTTT 58.222 55.000 0.00 0.00 42.81 3.27
752 796 0.756070 GCCTCTACCGCCTCTAGGTT 60.756 60.000 0.00 0.00 42.81 3.50
771 815 2.352805 GTGCTTGGGTCAGGGAGG 59.647 66.667 0.00 0.00 0.00 4.30
772 816 2.352805 GGTGCTTGGGTCAGGGAG 59.647 66.667 0.00 0.00 0.00 4.30
773 817 3.256960 GGGTGCTTGGGTCAGGGA 61.257 66.667 0.00 0.00 0.00 4.20
774 818 3.579302 TGGGTGCTTGGGTCAGGG 61.579 66.667 0.00 0.00 0.00 4.45
900 944 2.185608 GAGTCCTCGGCTTGGAGC 59.814 66.667 0.00 0.00 41.46 4.70
978 1038 4.821589 GCCGCCTCTTCCTGTCCG 62.822 72.222 0.00 0.00 0.00 4.79
1114 1174 1.556564 CAAGCATACTACCACCGTCG 58.443 55.000 0.00 0.00 0.00 5.12
1115 1175 1.287425 GCAAGCATACTACCACCGTC 58.713 55.000 0.00 0.00 0.00 4.79
1116 1176 0.107848 GGCAAGCATACTACCACCGT 60.108 55.000 0.00 0.00 0.00 4.83
1117 1177 0.107897 TGGCAAGCATACTACCACCG 60.108 55.000 0.00 0.00 29.53 4.94
1118 1178 1.379527 GTGGCAAGCATACTACCACC 58.620 55.000 6.76 0.00 43.05 4.61
1119 1179 1.379527 GGTGGCAAGCATACTACCAC 58.620 55.000 8.85 8.85 45.88 4.16
1120 1180 0.107897 CGGTGGCAAGCATACTACCA 60.108 55.000 0.00 0.00 31.51 3.25
1121 1181 0.107848 ACGGTGGCAAGCATACTACC 60.108 55.000 0.00 0.00 0.00 3.18
1122 1182 1.134788 AGACGGTGGCAAGCATACTAC 60.135 52.381 0.00 0.00 0.00 2.73
1123 1183 1.191535 AGACGGTGGCAAGCATACTA 58.808 50.000 0.00 0.00 0.00 1.82
1124 1184 0.324943 AAGACGGTGGCAAGCATACT 59.675 50.000 0.00 0.00 0.00 2.12
1125 1185 0.727398 GAAGACGGTGGCAAGCATAC 59.273 55.000 0.00 0.00 0.00 2.39
1126 1186 0.392461 GGAAGACGGTGGCAAGCATA 60.392 55.000 0.00 0.00 0.00 3.14
1127 1187 1.675641 GGAAGACGGTGGCAAGCAT 60.676 57.895 0.00 0.00 0.00 3.79
1128 1188 2.281484 GGAAGACGGTGGCAAGCA 60.281 61.111 0.00 0.00 0.00 3.91
1129 1189 3.056328 GGGAAGACGGTGGCAAGC 61.056 66.667 0.00 0.00 0.00 4.01
1130 1190 2.359975 GGGGAAGACGGTGGCAAG 60.360 66.667 0.00 0.00 0.00 4.01
1158 1218 1.135517 ACATAAACAACCAATCGCGCC 60.136 47.619 0.00 0.00 0.00 6.53
1171 1231 3.749609 ACGAACCCTAACAGCACATAAAC 59.250 43.478 0.00 0.00 0.00 2.01
1226 1286 4.813161 CGCATCAGATACCCATTCATATCC 59.187 45.833 0.00 0.00 0.00 2.59
1292 1352 2.115266 CAGGGGAAGCGTTTGGGT 59.885 61.111 0.00 0.00 0.00 4.51
1342 1402 0.240145 CACTAACACGAGCCAGACGA 59.760 55.000 0.00 0.00 34.70 4.20
1345 1405 0.243907 GAGCACTAACACGAGCCAGA 59.756 55.000 0.00 0.00 0.00 3.86
1407 1467 3.263170 TGCAATCTAGTGCCTCCAGTTAA 59.737 43.478 3.12 0.00 44.26 2.01
1468 1528 4.214332 GCCTCCTTTCTTAAGTTGACAGTG 59.786 45.833 1.63 0.00 0.00 3.66
1507 1567 3.997021 ACGATCTTAACCAAAGCAGAGTG 59.003 43.478 0.00 0.00 34.97 3.51
1578 1650 4.402829 TGAACAAAGCAGGCCTGTATAAA 58.597 39.130 32.81 9.67 0.00 1.40
1606 1678 2.749044 ACAAGCTGCAGGGCATCG 60.749 61.111 17.12 0.00 38.13 3.84
1639 1718 5.411669 GTCCTCTTACAAAATACCAGGTGTG 59.588 44.000 0.76 0.00 0.00 3.82
1643 1722 5.648092 CCTTGTCCTCTTACAAAATACCAGG 59.352 44.000 0.00 0.00 38.81 4.45
1644 1723 5.648092 CCCTTGTCCTCTTACAAAATACCAG 59.352 44.000 0.00 0.00 38.81 4.00
1646 1725 5.812286 TCCCTTGTCCTCTTACAAAATACC 58.188 41.667 0.00 0.00 38.81 2.73
1647 1726 6.708285 TCTCCCTTGTCCTCTTACAAAATAC 58.292 40.000 0.00 0.00 38.81 1.89
1648 1727 6.945636 TCTCCCTTGTCCTCTTACAAAATA 57.054 37.500 0.00 0.00 38.81 1.40
1650 1729 5.640158 TTCTCCCTTGTCCTCTTACAAAA 57.360 39.130 0.00 0.00 38.81 2.44
1656 1736 6.899892 AAGATAATTCTCCCTTGTCCTCTT 57.100 37.500 0.00 0.00 0.00 2.85
1663 1743 8.213679 TCCAATGAGTAAGATAATTCTCCCTTG 58.786 37.037 0.00 0.00 0.00 3.61
1664 1744 8.337118 TCCAATGAGTAAGATAATTCTCCCTT 57.663 34.615 0.00 0.00 0.00 3.95
1683 1763 3.684788 CGGGTACAGTTTCTTCTCCAATG 59.315 47.826 0.00 0.00 0.00 2.82
1699 1780 1.949525 TCCGCTACAGATAACGGGTAC 59.050 52.381 0.00 0.00 45.65 3.34
1702 1783 0.031721 GGTCCGCTACAGATAACGGG 59.968 60.000 0.00 0.00 45.65 5.28
1703 1784 1.030457 AGGTCCGCTACAGATAACGG 58.970 55.000 0.00 0.00 46.97 4.44
1734 1815 6.096141 TGCCTTCATTTCTGTTCAACTAAACA 59.904 34.615 0.00 0.00 37.56 2.83
1748 1829 8.992073 ACAATTAAATTGACTTGCCTTCATTTC 58.008 29.630 0.00 0.00 42.83 2.17
1754 1835 7.054491 ACAGACAATTAAATTGACTTGCCTT 57.946 32.000 0.00 0.00 41.91 4.35
1791 1872 3.518590 AGGGTTTAATCGTCAGCTAACG 58.481 45.455 1.94 1.94 43.92 3.18
1814 1895 1.972872 ACAGCAAGTTTCCCTCTGTG 58.027 50.000 0.00 0.00 36.72 3.66
1815 1896 2.301346 CAACAGCAAGTTTCCCTCTGT 58.699 47.619 0.00 0.00 38.74 3.41
1847 1928 4.644685 ACAAGTACAGTTGCCAAGTTGATT 59.355 37.500 3.87 0.00 0.00 2.57
1919 2000 3.410958 GCCTAGGCGCACTTAAGC 58.589 61.111 20.16 0.00 0.00 3.09
1930 2011 1.591504 GCTAGCGCCTAGAGCCTAGG 61.592 65.000 18.85 18.85 40.20 3.02
1931 2012 0.891449 TGCTAGCGCCTAGAGCCTAG 60.891 60.000 10.77 15.93 41.56 3.02
1932 2013 0.467474 TTGCTAGCGCCTAGAGCCTA 60.467 55.000 10.77 4.54 36.26 3.93
1933 2014 1.330655 TTTGCTAGCGCCTAGAGCCT 61.331 55.000 10.77 3.92 36.26 4.58
1934 2015 0.462047 TTTTGCTAGCGCCTAGAGCC 60.462 55.000 10.77 2.36 36.26 4.70
1935 2016 0.653114 GTTTTGCTAGCGCCTAGAGC 59.347 55.000 10.77 9.14 36.26 4.09
1936 2017 0.924090 CGTTTTGCTAGCGCCTAGAG 59.076 55.000 10.77 0.00 36.26 2.43
1937 2018 1.082117 GCGTTTTGCTAGCGCCTAGA 61.082 55.000 10.77 0.00 44.67 2.43
1938 2019 1.348594 GCGTTTTGCTAGCGCCTAG 59.651 57.895 10.77 6.65 44.67 3.02
1939 2020 3.481661 GCGTTTTGCTAGCGCCTA 58.518 55.556 10.77 0.00 44.67 3.93
1943 2024 1.348594 GCTAGGCGTTTTGCTAGCG 59.651 57.895 10.77 0.00 45.43 4.26
1984 2065 3.965209 GCATGCTTATGCGCAATTATG 57.035 42.857 17.11 15.61 44.06 1.90
1999 2080 0.039256 TTTCTGACCAAAGCGCATGC 60.039 50.000 11.47 7.91 43.24 4.06
2000 2081 2.322161 CTTTTCTGACCAAAGCGCATG 58.678 47.619 11.47 8.38 0.00 4.06
2001 2082 1.336240 GCTTTTCTGACCAAAGCGCAT 60.336 47.619 11.47 0.00 44.94 4.73
2002 2083 0.030638 GCTTTTCTGACCAAAGCGCA 59.969 50.000 11.47 0.00 44.94 6.09
2003 2084 2.801388 GCTTTTCTGACCAAAGCGC 58.199 52.632 10.15 0.00 44.94 5.92
2006 2087 3.709987 CCTTGTGCTTTTCTGACCAAAG 58.290 45.455 0.00 0.00 34.80 2.77
2007 2088 2.159114 GCCTTGTGCTTTTCTGACCAAA 60.159 45.455 0.00 0.00 36.87 3.28
2008 2089 1.408702 GCCTTGTGCTTTTCTGACCAA 59.591 47.619 0.00 0.00 36.87 3.67
2009 2090 1.032014 GCCTTGTGCTTTTCTGACCA 58.968 50.000 0.00 0.00 36.87 4.02
2010 2091 0.040067 CGCCTTGTGCTTTTCTGACC 60.040 55.000 0.00 0.00 38.05 4.02
2011 2092 0.040067 CCGCCTTGTGCTTTTCTGAC 60.040 55.000 0.00 0.00 38.05 3.51
2012 2093 0.465460 ACCGCCTTGTGCTTTTCTGA 60.465 50.000 0.00 0.00 38.05 3.27
2013 2094 0.318107 CACCGCCTTGTGCTTTTCTG 60.318 55.000 0.00 0.00 38.05 3.02
2014 2095 1.455383 CCACCGCCTTGTGCTTTTCT 61.455 55.000 0.00 0.00 38.05 2.52
2015 2096 1.007387 CCACCGCCTTGTGCTTTTC 60.007 57.895 0.00 0.00 38.05 2.29
2016 2097 3.128375 CCACCGCCTTGTGCTTTT 58.872 55.556 0.00 0.00 38.05 2.27
2017 2098 3.605664 GCCACCGCCTTGTGCTTT 61.606 61.111 0.00 0.00 38.05 3.51
2018 2099 4.892965 TGCCACCGCCTTGTGCTT 62.893 61.111 0.00 0.00 38.05 3.91
2019 2100 4.892965 TTGCCACCGCCTTGTGCT 62.893 61.111 0.00 0.00 38.05 4.40
2020 2101 2.713927 ATTTTGCCACCGCCTTGTGC 62.714 55.000 0.00 0.00 34.85 4.57
2021 2102 0.945265 CATTTTGCCACCGCCTTGTG 60.945 55.000 0.00 0.00 35.98 3.33
2022 2103 1.367102 CATTTTGCCACCGCCTTGT 59.633 52.632 0.00 0.00 0.00 3.16
2023 2104 2.028733 GCATTTTGCCACCGCCTTG 61.029 57.895 0.00 0.00 37.42 3.61
2024 2105 2.343387 GCATTTTGCCACCGCCTT 59.657 55.556 0.00 0.00 37.42 4.35
2025 2106 2.916703 TGCATTTTGCCACCGCCT 60.917 55.556 0.00 0.00 44.23 5.52
2026 2107 2.738139 GTGCATTTTGCCACCGCC 60.738 61.111 0.00 0.00 44.23 6.13
2027 2108 0.950071 ATTGTGCATTTTGCCACCGC 60.950 50.000 0.00 0.00 44.23 5.68
2028 2109 1.510776 AATTGTGCATTTTGCCACCG 58.489 45.000 0.00 0.00 44.23 4.94
2029 2110 4.672283 GCATTAATTGTGCATTTTGCCACC 60.672 41.667 11.42 0.00 44.23 4.61
2030 2111 4.405196 GCATTAATTGTGCATTTTGCCAC 58.595 39.130 11.42 0.00 44.23 5.01
2031 2112 3.439476 GGCATTAATTGTGCATTTTGCCA 59.561 39.130 16.35 0.00 44.74 4.92
2032 2113 3.690628 AGGCATTAATTGTGCATTTTGCC 59.309 39.130 16.35 13.36 45.22 4.52
2033 2114 4.950434 AGGCATTAATTGTGCATTTTGC 57.050 36.364 16.35 0.00 44.25 3.68
2034 2115 5.276489 CGCTAGGCATTAATTGTGCATTTTG 60.276 40.000 16.35 7.29 44.25 2.44
2035 2116 4.805192 CGCTAGGCATTAATTGTGCATTTT 59.195 37.500 16.35 4.96 44.25 1.82
2036 2117 4.362279 CGCTAGGCATTAATTGTGCATTT 58.638 39.130 16.35 6.80 44.25 2.32
2037 2118 3.796504 GCGCTAGGCATTAATTGTGCATT 60.797 43.478 16.35 8.66 44.25 3.56
2038 2119 2.287788 GCGCTAGGCATTAATTGTGCAT 60.288 45.455 16.35 12.91 44.25 3.96
2039 2120 1.065401 GCGCTAGGCATTAATTGTGCA 59.935 47.619 16.35 0.00 44.25 4.57
2040 2121 1.758783 GCGCTAGGCATTAATTGTGC 58.241 50.000 0.00 8.63 42.87 4.57
2061 2142 5.701224 ACAGTTCCCAGGATAGTTCAAAAA 58.299 37.500 0.00 0.00 0.00 1.94
2062 2143 5.319043 ACAGTTCCCAGGATAGTTCAAAA 57.681 39.130 0.00 0.00 0.00 2.44
2063 2144 4.993705 ACAGTTCCCAGGATAGTTCAAA 57.006 40.909 0.00 0.00 0.00 2.69
2064 2145 4.993705 AACAGTTCCCAGGATAGTTCAA 57.006 40.909 0.00 0.00 0.00 2.69
2065 2146 4.349636 TCAAACAGTTCCCAGGATAGTTCA 59.650 41.667 0.00 0.00 0.00 3.18
2066 2147 4.906618 TCAAACAGTTCCCAGGATAGTTC 58.093 43.478 0.00 0.00 0.00 3.01
2067 2148 4.993705 TCAAACAGTTCCCAGGATAGTT 57.006 40.909 0.00 0.00 0.00 2.24
2068 2149 5.520748 AATCAAACAGTTCCCAGGATAGT 57.479 39.130 0.00 0.00 0.00 2.12
2069 2150 6.209391 ACAAAATCAAACAGTTCCCAGGATAG 59.791 38.462 0.00 0.00 0.00 2.08
2070 2151 6.074648 ACAAAATCAAACAGTTCCCAGGATA 58.925 36.000 0.00 0.00 0.00 2.59
2071 2152 4.901250 ACAAAATCAAACAGTTCCCAGGAT 59.099 37.500 0.00 0.00 0.00 3.24
2072 2153 4.285863 ACAAAATCAAACAGTTCCCAGGA 58.714 39.130 0.00 0.00 0.00 3.86
2073 2154 4.670896 ACAAAATCAAACAGTTCCCAGG 57.329 40.909 0.00 0.00 0.00 4.45
2096 2177 2.634940 AGCACTGAGGTAAGCAAGAAGA 59.365 45.455 0.00 0.00 0.00 2.87
2129 2210 5.466819 ACACTGAATGTCAAAATGATGCAG 58.533 37.500 0.00 0.00 36.54 4.41
2183 2264 4.222810 TGTCTAGCAATAAACAGAGCCTCA 59.777 41.667 0.00 0.00 0.00 3.86
2192 2273 8.902735 GCTAAAACAGTTTGTCTAGCAATAAAC 58.097 33.333 17.81 0.00 36.89 2.01
2237 2318 0.976641 AAGACATCGGAGGAGCAACA 59.023 50.000 0.00 0.00 0.00 3.33
2321 2402 1.001924 GCTCTCAAGAGATGCGATCGA 60.002 52.381 21.57 4.34 44.74 3.59
2433 2514 5.804944 TCCTCATCCTCATCTTCATCTTC 57.195 43.478 0.00 0.00 0.00 2.87
2434 2515 5.845065 TCATCCTCATCCTCATCTTCATCTT 59.155 40.000 0.00 0.00 0.00 2.40
2435 2516 5.404395 TCATCCTCATCCTCATCTTCATCT 58.596 41.667 0.00 0.00 0.00 2.90
2436 2517 5.337733 CCTCATCCTCATCCTCATCTTCATC 60.338 48.000 0.00 0.00 0.00 2.92
2437 2518 4.532916 CCTCATCCTCATCCTCATCTTCAT 59.467 45.833 0.00 0.00 0.00 2.57
2438 2519 3.902467 CCTCATCCTCATCCTCATCTTCA 59.098 47.826 0.00 0.00 0.00 3.02
2578 2659 3.967332 TGAGATCACACATGAAGCAGA 57.033 42.857 0.00 0.00 38.69 4.26
2639 2720 4.943705 TCAGGTATGAAGAAACCATGCTTC 59.056 41.667 0.00 0.00 40.62 3.86
2998 3079 9.454585 GGTGGTTACTAACAATTTTGTAAGAAC 57.545 33.333 1.40 0.50 41.31 3.01
3016 3108 4.204799 ACAGGAAACAAGAAGGTGGTTAC 58.795 43.478 0.00 0.00 0.00 2.50
3019 3111 4.513406 TTACAGGAAACAAGAAGGTGGT 57.487 40.909 0.00 0.00 0.00 4.16
3020 3112 5.070001 TCATTACAGGAAACAAGAAGGTGG 58.930 41.667 0.00 0.00 0.00 4.61
3021 3113 5.997746 TCTCATTACAGGAAACAAGAAGGTG 59.002 40.000 0.00 0.00 0.00 4.00
3091 3185 3.954258 ACAGGGTGTCTCAAAAGAAAAGG 59.046 43.478 0.00 0.00 31.93 3.11
3097 3191 2.880890 CTCCAACAGGGTGTCTCAAAAG 59.119 50.000 0.00 0.00 38.11 2.27
3098 3192 2.507886 TCTCCAACAGGGTGTCTCAAAA 59.492 45.455 0.00 0.00 38.11 2.44
3160 3256 1.081840 GAGCCAACGCAAAGAGCAC 60.082 57.895 0.00 0.00 46.13 4.40
3214 3310 8.408601 ACATAATACAATTCTCAACAGCATTCC 58.591 33.333 0.00 0.00 0.00 3.01
3237 3337 8.546083 TCCCAACATAAATGGCTAATTAACAT 57.454 30.769 0.00 0.00 36.58 2.71
3302 3402 8.617290 ACAGACGAAGAAACTATTAAAACCAT 57.383 30.769 0.00 0.00 0.00 3.55
3303 3403 7.172019 GGACAGACGAAGAAACTATTAAAACCA 59.828 37.037 0.00 0.00 0.00 3.67
3304 3404 7.172019 TGGACAGACGAAGAAACTATTAAAACC 59.828 37.037 0.00 0.00 0.00 3.27
3305 3405 8.008279 GTGGACAGACGAAGAAACTATTAAAAC 58.992 37.037 0.00 0.00 0.00 2.43
3307 3407 7.439381 AGTGGACAGACGAAGAAACTATTAAA 58.561 34.615 0.00 0.00 0.00 1.52
3308 3408 6.989659 AGTGGACAGACGAAGAAACTATTAA 58.010 36.000 0.00 0.00 0.00 1.40
3309 3409 6.585695 AGTGGACAGACGAAGAAACTATTA 57.414 37.500 0.00 0.00 0.00 0.98
3310 3410 5.470047 AGTGGACAGACGAAGAAACTATT 57.530 39.130 0.00 0.00 0.00 1.73
3311 3411 5.470047 AAGTGGACAGACGAAGAAACTAT 57.530 39.130 0.00 0.00 0.00 2.12
3313 3413 3.821421 AAGTGGACAGACGAAGAAACT 57.179 42.857 0.00 0.00 0.00 2.66
3314 3414 6.018180 ACAATTAAGTGGACAGACGAAGAAAC 60.018 38.462 7.93 0.00 0.00 2.78
3316 3416 5.607477 ACAATTAAGTGGACAGACGAAGAA 58.393 37.500 7.93 0.00 0.00 2.52
3318 3418 7.456253 CAATACAATTAAGTGGACAGACGAAG 58.544 38.462 7.93 0.00 0.00 3.79
3322 3422 5.163652 GGGCAATACAATTAAGTGGACAGAC 60.164 44.000 7.93 0.00 0.00 3.51
3333 3433 2.158726 GGGACGGAGGGCAATACAATTA 60.159 50.000 0.00 0.00 0.00 1.40
3337 3437 1.202099 TTGGGACGGAGGGCAATACA 61.202 55.000 0.00 0.00 0.00 2.29
3338 3438 0.034863 TTTGGGACGGAGGGCAATAC 60.035 55.000 0.00 0.00 0.00 1.89
3341 3441 0.699399 TAATTTGGGACGGAGGGCAA 59.301 50.000 0.00 0.00 0.00 4.52
3343 3443 0.255033 ACTAATTTGGGACGGAGGGC 59.745 55.000 0.00 0.00 0.00 5.19
3344 3444 2.290705 ACAACTAATTTGGGACGGAGGG 60.291 50.000 0.00 0.00 39.84 4.30
3346 3446 3.939066 AGACAACTAATTTGGGACGGAG 58.061 45.455 0.00 0.00 39.84 4.63
3348 3448 5.121768 CACTAAGACAACTAATTTGGGACGG 59.878 44.000 0.00 0.00 39.84 4.79
3349 3449 5.699458 ACACTAAGACAACTAATTTGGGACG 59.301 40.000 0.00 0.00 39.84 4.79
3350 3450 7.506328 AACACTAAGACAACTAATTTGGGAC 57.494 36.000 0.00 0.00 39.84 4.46
3351 3451 7.881232 CCTAACACTAAGACAACTAATTTGGGA 59.119 37.037 0.00 0.00 39.84 4.37
3352 3452 7.120726 CCCTAACACTAAGACAACTAATTTGGG 59.879 40.741 0.00 0.00 39.84 4.12
3354 3454 8.842358 TCCCTAACACTAAGACAACTAATTTG 57.158 34.615 0.00 0.00 41.49 2.32
3355 3455 8.657712 ACTCCCTAACACTAAGACAACTAATTT 58.342 33.333 0.00 0.00 0.00 1.82
3356 3456 8.203681 ACTCCCTAACACTAAGACAACTAATT 57.796 34.615 0.00 0.00 0.00 1.40
3357 3457 7.793948 ACTCCCTAACACTAAGACAACTAAT 57.206 36.000 0.00 0.00 0.00 1.73
3358 3458 7.177392 GGTACTCCCTAACACTAAGACAACTAA 59.823 40.741 0.00 0.00 0.00 2.24
3359 3459 6.660949 GGTACTCCCTAACACTAAGACAACTA 59.339 42.308 0.00 0.00 0.00 2.24
3360 3460 5.479724 GGTACTCCCTAACACTAAGACAACT 59.520 44.000 0.00 0.00 0.00 3.16
3361 3461 5.479724 AGGTACTCCCTAACACTAAGACAAC 59.520 44.000 0.00 0.00 43.87 3.32
3362 3462 5.648247 AGGTACTCCCTAACACTAAGACAA 58.352 41.667 0.00 0.00 43.87 3.18
3363 3463 5.266709 AGGTACTCCCTAACACTAAGACA 57.733 43.478 0.00 0.00 43.87 3.41
3373 3473 7.523709 CACGTTTTAGTGTTAGGTACTCCCTAA 60.524 40.741 0.00 0.00 44.73 2.69
3374 3474 6.010219 ACGTTTTAGTGTTAGGTACTCCCTA 58.990 40.000 0.00 0.00 43.87 3.53
3375 3475 5.279156 CACGTTTTAGTGTTAGGTACTCCCT 60.279 44.000 0.00 0.00 41.03 4.20
3376 3476 4.925646 CACGTTTTAGTGTTAGGTACTCCC 59.074 45.833 0.00 0.00 37.32 4.30
3388 3488 6.020916 CGGATGTATCTACACACGTTTTAGTG 60.021 42.308 2.47 2.47 46.83 2.74
3389 3489 6.032094 CGGATGTATCTACACACGTTTTAGT 58.968 40.000 0.00 0.00 39.30 2.24
3390 3490 6.032094 ACGGATGTATCTACACACGTTTTAG 58.968 40.000 12.55 0.00 44.12 1.85
3391 3491 5.953183 ACGGATGTATCTACACACGTTTTA 58.047 37.500 12.55 0.00 44.12 1.52
3392 3492 4.813027 ACGGATGTATCTACACACGTTTT 58.187 39.130 12.55 0.00 44.12 2.43
3393 3493 4.445452 ACGGATGTATCTACACACGTTT 57.555 40.909 12.55 0.00 44.12 3.60
3394 3494 5.762825 ATACGGATGTATCTACACACGTT 57.237 39.130 19.43 9.85 44.12 3.99
3405 3505 9.698309 CTTAGATTTGTCAAGATACGGATGTAT 57.302 33.333 0.00 0.00 43.97 2.29
3406 3506 8.909923 TCTTAGATTTGTCAAGATACGGATGTA 58.090 33.333 0.00 0.00 34.45 2.29
3407 3507 7.707035 GTCTTAGATTTGTCAAGATACGGATGT 59.293 37.037 0.00 0.00 31.40 3.06
3408 3508 7.706607 TGTCTTAGATTTGTCAAGATACGGATG 59.293 37.037 0.00 0.00 31.40 3.51
3409 3509 7.782049 TGTCTTAGATTTGTCAAGATACGGAT 58.218 34.615 0.00 0.00 31.40 4.18
3410 3510 7.165460 TGTCTTAGATTTGTCAAGATACGGA 57.835 36.000 0.00 0.00 31.40 4.69
3411 3511 7.827819 TTGTCTTAGATTTGTCAAGATACGG 57.172 36.000 0.00 0.00 31.40 4.02
3412 3512 9.694520 CAATTGTCTTAGATTTGTCAAGATACG 57.305 33.333 0.00 0.00 31.40 3.06
3417 3517 9.270576 CGAATCAATTGTCTTAGATTTGTCAAG 57.729 33.333 5.13 0.00 31.35 3.02
3418 3518 8.236586 CCGAATCAATTGTCTTAGATTTGTCAA 58.763 33.333 5.13 0.00 32.47 3.18
3419 3519 7.148255 CCCGAATCAATTGTCTTAGATTTGTCA 60.148 37.037 5.13 0.00 32.47 3.58
3420 3520 7.065803 TCCCGAATCAATTGTCTTAGATTTGTC 59.934 37.037 5.13 0.00 32.47 3.18
3421 3521 6.884295 TCCCGAATCAATTGTCTTAGATTTGT 59.116 34.615 5.13 0.00 32.47 2.83
3422 3522 7.320443 TCCCGAATCAATTGTCTTAGATTTG 57.680 36.000 5.13 0.98 33.59 2.32
3423 3523 7.013655 CCATCCCGAATCAATTGTCTTAGATTT 59.986 37.037 5.13 0.00 31.35 2.17
3424 3524 6.488006 CCATCCCGAATCAATTGTCTTAGATT 59.512 38.462 5.13 0.00 33.70 2.40
3425 3525 6.000219 CCATCCCGAATCAATTGTCTTAGAT 59.000 40.000 5.13 0.26 0.00 1.98
3426 3526 5.130311 TCCATCCCGAATCAATTGTCTTAGA 59.870 40.000 5.13 0.00 0.00 2.10
3427 3527 5.368145 TCCATCCCGAATCAATTGTCTTAG 58.632 41.667 5.13 1.65 0.00 2.18
3428 3528 5.366482 TCCATCCCGAATCAATTGTCTTA 57.634 39.130 5.13 0.00 0.00 2.10
3429 3529 4.202441 CTCCATCCCGAATCAATTGTCTT 58.798 43.478 5.13 0.54 0.00 3.01
3430 3530 3.434167 CCTCCATCCCGAATCAATTGTCT 60.434 47.826 5.13 0.00 0.00 3.41
3431 3531 2.880890 CCTCCATCCCGAATCAATTGTC 59.119 50.000 5.13 0.00 0.00 3.18
3432 3532 2.423373 CCCTCCATCCCGAATCAATTGT 60.423 50.000 5.13 0.00 0.00 2.71
3433 3533 2.158623 TCCCTCCATCCCGAATCAATTG 60.159 50.000 0.00 0.00 0.00 2.32
3434 3534 2.135189 TCCCTCCATCCCGAATCAATT 58.865 47.619 0.00 0.00 0.00 2.32
3435 3535 1.421646 GTCCCTCCATCCCGAATCAAT 59.578 52.381 0.00 0.00 0.00 2.57
3436 3536 0.837272 GTCCCTCCATCCCGAATCAA 59.163 55.000 0.00 0.00 0.00 2.57
3437 3537 0.031111 AGTCCCTCCATCCCGAATCA 60.031 55.000 0.00 0.00 0.00 2.57
3438 3538 1.896465 CTAGTCCCTCCATCCCGAATC 59.104 57.143 0.00 0.00 0.00 2.52
3439 3539 1.220750 ACTAGTCCCTCCATCCCGAAT 59.779 52.381 0.00 0.00 0.00 3.34
3440 3540 0.635009 ACTAGTCCCTCCATCCCGAA 59.365 55.000 0.00 0.00 0.00 4.30
3441 3541 0.635009 AACTAGTCCCTCCATCCCGA 59.365 55.000 0.00 0.00 0.00 5.14
3442 3542 2.376695 TAACTAGTCCCTCCATCCCG 57.623 55.000 0.00 0.00 0.00 5.14
3443 3543 3.835395 CAGATAACTAGTCCCTCCATCCC 59.165 52.174 0.00 0.00 0.00 3.85
3444 3544 4.282195 CACAGATAACTAGTCCCTCCATCC 59.718 50.000 0.00 0.00 0.00 3.51
3445 3545 4.896482 ACACAGATAACTAGTCCCTCCATC 59.104 45.833 0.00 0.00 0.00 3.51
3446 3546 4.884961 ACACAGATAACTAGTCCCTCCAT 58.115 43.478 0.00 0.00 0.00 3.41
3447 3547 4.332683 ACACAGATAACTAGTCCCTCCA 57.667 45.455 0.00 0.00 0.00 3.86
3448 3548 4.141914 CCAACACAGATAACTAGTCCCTCC 60.142 50.000 0.00 0.00 0.00 4.30
3449 3549 4.710375 TCCAACACAGATAACTAGTCCCTC 59.290 45.833 0.00 0.00 0.00 4.30
3450 3550 4.684724 TCCAACACAGATAACTAGTCCCT 58.315 43.478 0.00 0.00 0.00 4.20
3451 3551 5.615925 ATCCAACACAGATAACTAGTCCC 57.384 43.478 0.00 0.00 0.00 4.46
3460 3560 9.656323 AGGAGTACTTAATATCCAACACAGATA 57.344 33.333 0.00 0.00 34.08 1.98
3482 3582 4.646040 TCCATGCATTCACCATTAAAGGAG 59.354 41.667 3.20 0.00 0.00 3.69
3490 3590 2.651455 CAGACTCCATGCATTCACCAT 58.349 47.619 0.00 0.00 0.00 3.55
3500 3600 1.004595 CGATGTGTGCAGACTCCATG 58.995 55.000 15.76 0.00 0.00 3.66
3501 3601 0.897621 TCGATGTGTGCAGACTCCAT 59.102 50.000 15.76 0.00 0.00 3.41
3512 3662 4.265904 TGTCATTAGGTGTTCGATGTGT 57.734 40.909 0.00 0.00 0.00 3.72
3519 3669 7.391148 AACATAACCATGTCATTAGGTGTTC 57.609 36.000 0.00 0.00 44.83 3.18
3539 3689 7.340232 ACATCAACATAGCTGTAATGGAAACAT 59.660 33.333 0.00 0.00 44.44 2.71
3541 3691 6.968904 CACATCAACATAGCTGTAATGGAAAC 59.031 38.462 0.00 0.00 33.36 2.78
3544 3694 5.104569 TCCACATCAACATAGCTGTAATGGA 60.105 40.000 0.00 0.00 33.36 3.41
3545 3695 5.125356 TCCACATCAACATAGCTGTAATGG 58.875 41.667 0.00 0.00 33.36 3.16
3550 3700 2.092753 CCCTCCACATCAACATAGCTGT 60.093 50.000 0.00 0.00 37.12 4.40
3579 3729 2.904866 GTCACCCGCAGCAACCAA 60.905 61.111 0.00 0.00 0.00 3.67
3629 3779 0.109272 TTGTGATCACGAGCTCGGAC 60.109 55.000 36.93 23.91 44.95 4.79
3783 3933 4.999311 TGAATGGATAGGATGAAGAATGCG 59.001 41.667 0.00 0.00 0.00 4.73
3819 3969 0.387239 GGTCTCGGCATTTGCAACAC 60.387 55.000 0.00 0.00 44.36 3.32
3861 4027 3.751518 TCTTGTAGCTGAAAAAGGGGAC 58.248 45.455 0.00 0.00 0.00 4.46
4060 4226 1.086634 GCTCCACGGACTGATTGCTC 61.087 60.000 0.00 0.00 0.00 4.26
4104 4272 1.864565 GACAAAACACACCAATGGCC 58.135 50.000 0.00 0.00 0.00 5.36
4191 4366 3.081061 CTGGGCTGTGCAGTGTAAATAA 58.919 45.455 0.00 0.00 0.00 1.40
4201 4376 1.827789 GGTTCAACTGGGCTGTGCA 60.828 57.895 0.00 0.00 0.00 4.57
4203 4378 2.086869 CATAGGTTCAACTGGGCTGTG 58.913 52.381 0.00 0.00 0.00 3.66
4204 4379 1.985159 TCATAGGTTCAACTGGGCTGT 59.015 47.619 0.00 0.00 0.00 4.40
4233 4408 1.207791 GTCAGTCTCCCCATCACCAT 58.792 55.000 0.00 0.00 0.00 3.55
4237 4412 3.515502 CAGTTTAGTCAGTCTCCCCATCA 59.484 47.826 0.00 0.00 0.00 3.07
4262 4437 2.028476 ACAAGTCATACCTTACGCTGCA 60.028 45.455 0.00 0.00 0.00 4.41
4263 4438 2.603560 GACAAGTCATACCTTACGCTGC 59.396 50.000 0.00 0.00 0.00 5.25
4264 4439 2.852413 CGACAAGTCATACCTTACGCTG 59.148 50.000 0.72 0.00 0.00 5.18
4265 4440 2.751259 TCGACAAGTCATACCTTACGCT 59.249 45.455 0.72 0.00 0.00 5.07
4266 4441 3.106672 CTCGACAAGTCATACCTTACGC 58.893 50.000 0.72 0.00 0.00 4.42
4267 4442 4.611310 TCTCGACAAGTCATACCTTACG 57.389 45.455 0.72 0.00 0.00 3.18
4268 4443 7.544566 TCATTTTCTCGACAAGTCATACCTTAC 59.455 37.037 0.72 0.00 0.00 2.34
4269 4444 7.608153 TCATTTTCTCGACAAGTCATACCTTA 58.392 34.615 0.72 0.00 0.00 2.69
4270 4445 6.464222 TCATTTTCTCGACAAGTCATACCTT 58.536 36.000 0.72 0.00 0.00 3.50
4272 4447 6.910536 ATCATTTTCTCGACAAGTCATACC 57.089 37.500 0.72 0.00 0.00 2.73
4275 4450 9.212641 CCATATATCATTTTCTCGACAAGTCAT 57.787 33.333 0.72 0.00 0.00 3.06
4347 4525 1.096386 CCACCTCTCGGTCTACCTCG 61.096 65.000 0.00 0.00 43.24 4.63
4365 4543 3.334583 TCATACTGAAGCAACCTGTCC 57.665 47.619 0.00 0.00 0.00 4.02
4367 4545 3.370953 GGGATCATACTGAAGCAACCTGT 60.371 47.826 0.00 0.00 0.00 4.00
4369 4547 2.846206 TGGGATCATACTGAAGCAACCT 59.154 45.455 0.00 0.00 0.00 3.50
4370 4548 2.945668 GTGGGATCATACTGAAGCAACC 59.054 50.000 0.00 0.00 0.00 3.77
4382 4560 1.945819 GCAAGTGTCACGTGGGATCAT 60.946 52.381 17.00 0.00 0.00 2.45
4398 4581 3.943381 TCCAGCTACATTTCATCTGCAAG 59.057 43.478 0.00 0.00 0.00 4.01
4519 4705 0.322816 ATGAAATGTGGACGCAGGCT 60.323 50.000 0.00 0.00 0.00 4.58
4558 4744 3.617531 CGAAATTCACACCTGCTACCTCT 60.618 47.826 0.00 0.00 0.00 3.69
4559 4745 2.673368 CGAAATTCACACCTGCTACCTC 59.327 50.000 0.00 0.00 0.00 3.85
4560 4746 2.699954 CGAAATTCACACCTGCTACCT 58.300 47.619 0.00 0.00 0.00 3.08
4664 4858 5.930209 ATAAGATGGGAAAAGGATGGCTA 57.070 39.130 0.00 0.00 0.00 3.93
4665 4859 4.821532 ATAAGATGGGAAAAGGATGGCT 57.178 40.909 0.00 0.00 0.00 4.75
4669 4863 8.230306 AGCAGAATAATAAGATGGGAAAAGGAT 58.770 33.333 0.00 0.00 0.00 3.24
4673 4867 7.013655 GCAGAGCAGAATAATAAGATGGGAAAA 59.986 37.037 0.00 0.00 0.00 2.29
4800 4996 2.753452 TGCACTACTTTAGAGAGACGGG 59.247 50.000 0.00 0.00 0.00 5.28
4805 5001 7.658179 TTGAAACATGCACTACTTTAGAGAG 57.342 36.000 0.00 0.00 0.00 3.20
4877 5204 9.973246 GTAGATGTTGTCATAACATTACTGTTG 57.027 33.333 8.60 0.00 45.16 3.33
4886 5213 6.649141 GTCTGGTTGTAGATGTTGTCATAACA 59.351 38.462 0.00 0.00 34.06 2.41
4892 5219 4.002906 TGGTCTGGTTGTAGATGTTGTC 57.997 45.455 0.00 0.00 0.00 3.18
4896 5223 3.181329 TGGATGGTCTGGTTGTAGATGT 58.819 45.455 0.00 0.00 0.00 3.06
4908 5235 3.189606 TGTAGGGTGATTTGGATGGTCT 58.810 45.455 0.00 0.00 0.00 3.85
4926 5253 0.400213 CCAGTTTGAGGTGCCCTGTA 59.600 55.000 0.00 0.00 31.76 2.74
4948 5275 6.420913 AACAGCCCGAACATATATAGAACT 57.579 37.500 0.00 0.00 0.00 3.01
4949 5276 5.345202 CGAACAGCCCGAACATATATAGAAC 59.655 44.000 0.00 0.00 0.00 3.01
4950 5277 5.466819 CGAACAGCCCGAACATATATAGAA 58.533 41.667 0.00 0.00 0.00 2.10
4967 5294 1.830408 TTTTGGGGGTGCCGAACAG 60.830 57.895 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.