Multiple sequence alignment - TraesCS7B01G331300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G331300 chr7B 100.000 2980 0 0 1 2980 586655375 586658354 0.000000e+00 5504
1 TraesCS7B01G331300 chr7B 93.525 139 8 1 1 139 705325432 705325295 3.890000e-49 206
2 TraesCS7B01G331300 chr7B 93.431 137 8 1 4 139 180685493 180685357 5.040000e-48 202
3 TraesCS7B01G331300 chr7D 94.699 1528 42 17 160 1664 543556693 543558204 0.000000e+00 2337
4 TraesCS7B01G331300 chr7D 96.442 1040 21 8 1954 2980 543558237 543559273 0.000000e+00 1701
5 TraesCS7B01G331300 chr2A 93.617 141 7 2 1 139 398760996 398760856 3.010000e-50 209
6 TraesCS7B01G331300 chr3B 93.571 140 8 1 1 139 41452865 41452726 1.080000e-49 207
7 TraesCS7B01G331300 chr3B 92.806 139 10 0 1 139 123479770 123479908 5.040000e-48 202
8 TraesCS7B01G331300 chr3B 92.857 140 9 1 1 139 735809142 735809281 5.040000e-48 202
9 TraesCS7B01G331300 chr2B 93.478 138 8 1 1 137 770041166 770041029 1.400000e-48 204
10 TraesCS7B01G331300 chr5B 92.857 140 9 1 1 139 437253317 437253456 5.040000e-48 202
11 TraesCS7B01G331300 chr1B 92.857 140 9 1 1 139 648108399 648108538 5.040000e-48 202


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G331300 chr7B 586655375 586658354 2979 False 5504 5504 100.0000 1 2980 1 chr7B.!!$F1 2979
1 TraesCS7B01G331300 chr7D 543556693 543559273 2580 False 2019 2337 95.5705 160 2980 2 chr7D.!!$F1 2820

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
93 94 0.027586 GGTTGTGACAAGTGACGCAC 59.972 55.0 0.0 2.28 30.79 5.34 F
521 525 0.038744 TTCTACCCGACTCCTTCCGT 59.961 55.0 0.0 0.00 0.00 4.69 F
539 543 0.811281 GTGGAAGCAGAAAATCCCCG 59.189 55.0 0.0 0.00 32.01 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1838 1862 0.032952 TACCTGCCAGTTCACACGTC 59.967 55.0 0.0 0.0 0.00 4.34 R
1844 1868 0.109723 GGGTGTTACCTGCCAGTTCA 59.890 55.0 0.0 0.0 38.64 3.18 R
2436 2461 0.328258 GCCAGGAACCCAGCTTCTTA 59.672 55.0 0.0 0.0 0.00 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.093306 TCGAGATTTGAACGCATGGT 57.907 45.000 0.00 0.00 0.00 3.55
20 21 2.422597 TCGAGATTTGAACGCATGGTT 58.577 42.857 0.00 0.00 42.96 3.67
21 22 2.811431 TCGAGATTTGAACGCATGGTTT 59.189 40.909 0.00 0.00 39.50 3.27
22 23 3.997681 TCGAGATTTGAACGCATGGTTTA 59.002 39.130 0.00 0.00 39.50 2.01
23 24 4.452795 TCGAGATTTGAACGCATGGTTTAA 59.547 37.500 0.00 0.00 39.50 1.52
24 25 4.788100 CGAGATTTGAACGCATGGTTTAAG 59.212 41.667 0.00 0.00 39.50 1.85
25 26 5.390461 CGAGATTTGAACGCATGGTTTAAGA 60.390 40.000 0.00 0.00 39.50 2.10
26 27 5.942872 AGATTTGAACGCATGGTTTAAGAG 58.057 37.500 0.00 0.00 39.50 2.85
27 28 5.705441 AGATTTGAACGCATGGTTTAAGAGA 59.295 36.000 0.00 0.00 39.50 3.10
28 29 5.957842 TTTGAACGCATGGTTTAAGAGAT 57.042 34.783 0.00 0.00 39.50 2.75
29 30 7.552687 AGATTTGAACGCATGGTTTAAGAGATA 59.447 33.333 0.00 0.00 39.50 1.98
30 31 7.441890 TTTGAACGCATGGTTTAAGAGATAA 57.558 32.000 0.00 0.00 39.50 1.75
31 32 7.441890 TTGAACGCATGGTTTAAGAGATAAA 57.558 32.000 0.00 0.00 39.50 1.40
32 33 7.624360 TGAACGCATGGTTTAAGAGATAAAT 57.376 32.000 0.00 0.00 39.50 1.40
33 34 7.693952 TGAACGCATGGTTTAAGAGATAAATC 58.306 34.615 0.00 0.00 39.50 2.17
34 35 6.287107 ACGCATGGTTTAAGAGATAAATCG 57.713 37.500 0.00 0.00 37.41 3.34
35 36 5.815740 ACGCATGGTTTAAGAGATAAATCGT 59.184 36.000 0.00 0.00 37.41 3.73
36 37 6.315393 ACGCATGGTTTAAGAGATAAATCGTT 59.685 34.615 0.00 0.00 37.41 3.85
37 38 7.148306 ACGCATGGTTTAAGAGATAAATCGTTT 60.148 33.333 0.00 0.00 37.41 3.60
38 39 7.696453 CGCATGGTTTAAGAGATAAATCGTTTT 59.304 33.333 0.00 0.00 37.41 2.43
39 40 8.798153 GCATGGTTTAAGAGATAAATCGTTTTG 58.202 33.333 1.69 0.00 37.41 2.44
49 50 9.681062 AGAGATAAATCGTTTTGAATAAAGGGA 57.319 29.630 1.69 0.00 0.00 4.20
55 56 8.801882 AATCGTTTTGAATAAAGGGATCTACA 57.198 30.769 0.00 0.00 0.00 2.74
56 57 8.801882 ATCGTTTTGAATAAAGGGATCTACAA 57.198 30.769 0.00 0.00 0.00 2.41
57 58 8.624367 TCGTTTTGAATAAAGGGATCTACAAA 57.376 30.769 0.00 0.00 0.00 2.83
58 59 9.069082 TCGTTTTGAATAAAGGGATCTACAAAA 57.931 29.630 0.00 0.00 34.95 2.44
59 60 9.685828 CGTTTTGAATAAAGGGATCTACAAAAA 57.314 29.630 0.00 0.00 37.59 1.94
79 80 5.755409 AAAAAGGAAAACTCCAAGGTTGT 57.245 34.783 0.00 0.00 0.00 3.32
80 81 4.736126 AAAGGAAAACTCCAAGGTTGTG 57.264 40.909 0.00 0.00 0.00 3.33
81 82 3.662759 AGGAAAACTCCAAGGTTGTGA 57.337 42.857 0.00 0.00 0.00 3.58
82 83 3.288092 AGGAAAACTCCAAGGTTGTGAC 58.712 45.455 0.00 0.00 0.00 3.67
83 84 3.020984 GGAAAACTCCAAGGTTGTGACA 58.979 45.455 0.00 0.00 0.00 3.58
84 85 3.445805 GGAAAACTCCAAGGTTGTGACAA 59.554 43.478 0.00 0.00 0.00 3.18
85 86 4.440112 GGAAAACTCCAAGGTTGTGACAAG 60.440 45.833 0.00 0.00 0.00 3.16
86 87 3.366052 AACTCCAAGGTTGTGACAAGT 57.634 42.857 0.00 0.00 0.00 3.16
87 88 2.643551 ACTCCAAGGTTGTGACAAGTG 58.356 47.619 0.00 0.00 0.00 3.16
88 89 2.238646 ACTCCAAGGTTGTGACAAGTGA 59.761 45.455 0.00 0.00 0.00 3.41
89 90 2.614057 CTCCAAGGTTGTGACAAGTGAC 59.386 50.000 0.00 0.00 0.00 3.67
90 91 1.330521 CCAAGGTTGTGACAAGTGACG 59.669 52.381 0.00 0.00 0.00 4.35
91 92 1.014352 AAGGTTGTGACAAGTGACGC 58.986 50.000 0.00 0.00 0.00 5.19
92 93 0.107897 AGGTTGTGACAAGTGACGCA 60.108 50.000 0.00 0.00 0.00 5.24
93 94 0.027586 GGTTGTGACAAGTGACGCAC 59.972 55.000 0.00 2.28 30.79 5.34
94 95 0.724549 GTTGTGACAAGTGACGCACA 59.275 50.000 0.00 0.00 39.27 4.57
95 96 1.330521 GTTGTGACAAGTGACGCACAT 59.669 47.619 0.00 0.00 40.51 3.21
96 97 0.936600 TGTGACAAGTGACGCACATG 59.063 50.000 11.58 11.65 38.74 3.21
97 98 0.384725 GTGACAAGTGACGCACATGC 60.385 55.000 12.77 0.00 36.67 4.06
98 99 0.813210 TGACAAGTGACGCACATGCA 60.813 50.000 12.77 0.00 36.67 3.96
99 100 0.110509 GACAAGTGACGCACATGCAG 60.111 55.000 12.77 0.00 36.67 4.41
100 101 1.441515 CAAGTGACGCACATGCAGC 60.442 57.895 11.58 0.00 42.21 5.25
119 120 2.972505 CGCCACTTGTCGCAACCT 60.973 61.111 0.00 0.00 0.00 3.50
120 121 2.639286 GCCACTTGTCGCAACCTG 59.361 61.111 0.00 0.00 0.00 4.00
121 122 2.908073 GCCACTTGTCGCAACCTGG 61.908 63.158 0.00 0.00 0.00 4.45
122 123 2.260869 CCACTTGTCGCAACCTGGG 61.261 63.158 0.00 0.00 0.00 4.45
123 124 2.113139 ACTTGTCGCAACCTGGGG 59.887 61.111 0.00 0.00 0.00 4.96
124 125 2.429930 CTTGTCGCAACCTGGGGA 59.570 61.111 0.00 0.00 0.00 4.81
125 126 1.228124 CTTGTCGCAACCTGGGGAA 60.228 57.895 0.00 0.00 0.00 3.97
126 127 1.228124 TTGTCGCAACCTGGGGAAG 60.228 57.895 0.00 0.00 0.00 3.46
127 128 1.990160 TTGTCGCAACCTGGGGAAGT 61.990 55.000 0.00 0.00 0.00 3.01
128 129 1.228154 GTCGCAACCTGGGGAAGTT 60.228 57.895 0.00 0.00 0.00 2.66
129 130 1.228124 TCGCAACCTGGGGAAGTTG 60.228 57.895 0.00 0.00 44.93 3.16
130 131 2.268076 CGCAACCTGGGGAAGTTGG 61.268 63.158 0.00 0.00 42.87 3.77
131 132 1.152830 GCAACCTGGGGAAGTTGGA 59.847 57.895 0.00 0.00 42.87 3.53
132 133 0.895559 GCAACCTGGGGAAGTTGGAG 60.896 60.000 0.00 0.00 42.87 3.86
133 134 0.478507 CAACCTGGGGAAGTTGGAGT 59.521 55.000 0.00 0.00 39.73 3.85
134 135 0.478507 AACCTGGGGAAGTTGGAGTG 59.521 55.000 0.00 0.00 0.00 3.51
135 136 0.401395 ACCTGGGGAAGTTGGAGTGA 60.401 55.000 0.00 0.00 0.00 3.41
136 137 0.995024 CCTGGGGAAGTTGGAGTGAT 59.005 55.000 0.00 0.00 0.00 3.06
137 138 1.065126 CCTGGGGAAGTTGGAGTGATC 60.065 57.143 0.00 0.00 0.00 2.92
138 139 1.912043 CTGGGGAAGTTGGAGTGATCT 59.088 52.381 0.00 0.00 0.00 2.75
139 140 3.107601 CTGGGGAAGTTGGAGTGATCTA 58.892 50.000 0.00 0.00 0.00 1.98
140 141 2.838202 TGGGGAAGTTGGAGTGATCTAC 59.162 50.000 0.00 0.00 0.00 2.59
141 142 3.108376 GGGGAAGTTGGAGTGATCTACT 58.892 50.000 0.00 0.00 44.02 2.57
155 156 7.682787 AGTGATCTACTCCTTAATTGGTGAT 57.317 36.000 0.00 0.00 33.17 3.06
156 157 8.095452 AGTGATCTACTCCTTAATTGGTGATT 57.905 34.615 0.00 0.00 33.17 2.57
157 158 8.552296 AGTGATCTACTCCTTAATTGGTGATTT 58.448 33.333 0.00 0.00 33.17 2.17
158 159 8.831550 GTGATCTACTCCTTAATTGGTGATTTC 58.168 37.037 0.00 0.00 0.00 2.17
239 240 2.837591 GGGCCATTAGTTTCCCAACATT 59.162 45.455 4.39 0.00 38.62 2.71
240 241 4.027437 GGGCCATTAGTTTCCCAACATTA 58.973 43.478 4.39 0.00 38.62 1.90
241 242 4.653801 GGGCCATTAGTTTCCCAACATTAT 59.346 41.667 4.39 0.00 38.62 1.28
336 338 6.665465 ACGCAATTGACTAAAACTAAACCTC 58.335 36.000 10.34 0.00 0.00 3.85
338 340 6.084277 GCAATTGACTAAAACTAAACCTCCG 58.916 40.000 10.34 0.00 0.00 4.63
340 342 4.339872 TGACTAAAACTAAACCTCCGCA 57.660 40.909 0.00 0.00 0.00 5.69
361 365 3.127533 GGCACATCACCTCGCCAC 61.128 66.667 0.00 0.00 44.25 5.01
512 516 2.493501 GTCCCGCTTCTACCCGAC 59.506 66.667 0.00 0.00 0.00 4.79
516 520 1.753463 CCGCTTCTACCCGACTCCT 60.753 63.158 0.00 0.00 0.00 3.69
517 521 1.321074 CCGCTTCTACCCGACTCCTT 61.321 60.000 0.00 0.00 0.00 3.36
521 525 0.038744 TTCTACCCGACTCCTTCCGT 59.961 55.000 0.00 0.00 0.00 4.69
539 543 0.811281 GTGGAAGCAGAAAATCCCCG 59.189 55.000 0.00 0.00 32.01 5.73
546 550 2.271173 GAAAATCCCCGTCCCGCT 59.729 61.111 0.00 0.00 0.00 5.52
662 666 4.363990 CAGTCGCGGTGGAGCAGT 62.364 66.667 6.13 0.00 36.85 4.40
679 697 1.891919 GTTGCAGTCGACAAGGCCA 60.892 57.895 19.50 7.41 0.00 5.36
706 725 4.955811 AGTTTTCTCCCAAATCCCAAAC 57.044 40.909 0.00 0.00 0.00 2.93
720 739 1.715019 CCAAACCCCCAGGAGTGACA 61.715 60.000 0.00 0.00 36.73 3.58
726 745 4.363990 CCAGGAGTGACAGCGCGT 62.364 66.667 8.43 2.53 0.00 6.01
740 759 1.655329 CGCGTTAGGTTTTGCCCAA 59.345 52.632 0.00 0.00 38.26 4.12
1001 1025 3.963374 TGCAGATCTTAGCCAGACAGTAT 59.037 43.478 0.00 0.00 32.83 2.12
1006 1030 4.944619 TCTTAGCCAGACAGTATGATGG 57.055 45.455 0.00 0.00 45.15 3.51
1062 1086 7.008440 ACGTTTCCTTGTTACAACTTAGTTC 57.992 36.000 0.00 0.00 0.00 3.01
1094 1118 9.929722 TTTATCCGAATGTTCATTCTTATTTCG 57.070 29.630 19.00 8.89 0.00 3.46
1172 1196 4.002982 TCCATCGATTGTGAAAGTCTTGG 58.997 43.478 0.00 0.00 0.00 3.61
1256 1280 6.478344 TGTTTGTTCCATGTTGTTAATTGAGC 59.522 34.615 0.00 0.00 0.00 4.26
1272 1296 3.592898 TGAGCGCAAAGAGAAGATACA 57.407 42.857 11.47 0.00 0.00 2.29
1279 1303 4.246458 GCAAAGAGAAGATACAAGTCCGT 58.754 43.478 0.00 0.00 0.00 4.69
1335 1359 7.872993 TCATACTGAAAAAGTCTCTAACAGTGG 59.127 37.037 0.00 0.00 40.56 4.00
1336 1360 4.816925 ACTGAAAAAGTCTCTAACAGTGGC 59.183 41.667 0.00 0.00 31.64 5.01
1409 1433 6.069440 ACAATTTGGAGTCTTGGAGGATATCA 60.069 38.462 4.83 0.00 0.00 2.15
1552 1576 4.408921 TGGACCGATTAGATCCTCACAAAT 59.591 41.667 0.00 0.00 31.97 2.32
1624 1648 5.118286 GGAACATTATTCCAGGCCAAAATG 58.882 41.667 5.01 7.75 38.45 2.32
1669 1693 3.794717 GGGGGTTCTTACTCGAAAGATC 58.205 50.000 0.53 0.79 40.84 2.75
1670 1694 3.431905 GGGGGTTCTTACTCGAAAGATCC 60.432 52.174 14.68 14.68 41.60 3.36
1671 1695 3.451540 GGGGTTCTTACTCGAAAGATCCT 59.548 47.826 19.38 0.00 41.84 3.24
1672 1696 4.434520 GGGTTCTTACTCGAAAGATCCTG 58.565 47.826 19.38 0.00 41.84 3.86
1673 1697 4.159879 GGGTTCTTACTCGAAAGATCCTGA 59.840 45.833 19.38 0.00 41.84 3.86
1674 1698 5.103687 GGTTCTTACTCGAAAGATCCTGAC 58.896 45.833 15.35 5.38 40.19 3.51
1675 1699 5.336531 GGTTCTTACTCGAAAGATCCTGACA 60.337 44.000 15.35 0.00 40.19 3.58
1676 1700 5.312120 TCTTACTCGAAAGATCCTGACAC 57.688 43.478 0.00 0.00 40.84 3.67
1677 1701 4.765339 TCTTACTCGAAAGATCCTGACACA 59.235 41.667 0.00 0.00 40.84 3.72
1678 1702 3.584406 ACTCGAAAGATCCTGACACAG 57.416 47.619 0.00 0.00 40.84 3.66
1679 1703 3.157881 ACTCGAAAGATCCTGACACAGA 58.842 45.455 0.00 0.00 40.84 3.41
1680 1704 3.766591 ACTCGAAAGATCCTGACACAGAT 59.233 43.478 0.00 0.00 40.84 2.90
1681 1705 4.221703 ACTCGAAAGATCCTGACACAGATT 59.778 41.667 0.00 0.00 40.84 2.40
1682 1706 4.748892 TCGAAAGATCCTGACACAGATTC 58.251 43.478 0.00 0.00 30.84 2.52
1683 1707 4.464244 TCGAAAGATCCTGACACAGATTCT 59.536 41.667 0.00 0.00 30.84 2.40
1684 1708 4.565962 CGAAAGATCCTGACACAGATTCTG 59.434 45.833 12.17 12.17 37.52 3.02
1685 1709 5.623141 CGAAAGATCCTGACACAGATTCTGA 60.623 44.000 20.33 0.00 35.18 3.27
1686 1710 5.954153 AAGATCCTGACACAGATTCTGAT 57.046 39.130 20.33 7.71 35.18 2.90
1687 1711 7.429374 AAAGATCCTGACACAGATTCTGATA 57.571 36.000 20.33 2.86 35.18 2.15
1688 1712 7.615039 AAGATCCTGACACAGATTCTGATAT 57.385 36.000 20.33 4.88 35.18 1.63
1689 1713 7.615039 AGATCCTGACACAGATTCTGATATT 57.385 36.000 20.33 1.20 35.18 1.28
1690 1714 8.718158 AGATCCTGACACAGATTCTGATATTA 57.282 34.615 20.33 1.61 35.18 0.98
1691 1715 9.152327 AGATCCTGACACAGATTCTGATATTAA 57.848 33.333 20.33 1.02 35.18 1.40
1692 1716 9.421806 GATCCTGACACAGATTCTGATATTAAG 57.578 37.037 20.33 9.08 35.18 1.85
1693 1717 8.539117 TCCTGACACAGATTCTGATATTAAGA 57.461 34.615 20.33 5.91 35.18 2.10
1694 1718 8.981659 TCCTGACACAGATTCTGATATTAAGAA 58.018 33.333 20.33 4.74 38.01 2.52
1695 1719 9.605275 CCTGACACAGATTCTGATATTAAGAAA 57.395 33.333 20.33 0.00 37.22 2.52
1697 1721 9.087424 TGACACAGATTCTGATATTAAGAAACG 57.913 33.333 20.33 0.00 37.22 3.60
1698 1722 9.302345 GACACAGATTCTGATATTAAGAAACGA 57.698 33.333 20.33 0.00 37.22 3.85
1699 1723 9.823647 ACACAGATTCTGATATTAAGAAACGAT 57.176 29.630 20.33 0.00 37.22 3.73
1706 1730 9.613428 TTCTGATATTAAGAAACGATTCATGGT 57.387 29.630 8.22 0.00 38.06 3.55
1712 1736 7.591006 TTAAGAAACGATTCATGGTACTGAC 57.409 36.000 8.22 0.00 38.06 3.51
1713 1737 5.407407 AGAAACGATTCATGGTACTGACT 57.593 39.130 8.22 0.00 38.06 3.41
1714 1738 6.525578 AGAAACGATTCATGGTACTGACTA 57.474 37.500 8.22 0.00 38.06 2.59
1715 1739 7.113658 AGAAACGATTCATGGTACTGACTAT 57.886 36.000 8.22 0.00 38.06 2.12
1716 1740 7.556844 AGAAACGATTCATGGTACTGACTATT 58.443 34.615 8.22 0.00 38.06 1.73
1717 1741 7.492669 AGAAACGATTCATGGTACTGACTATTG 59.507 37.037 8.22 0.00 38.06 1.90
1718 1742 5.601662 ACGATTCATGGTACTGACTATTGG 58.398 41.667 0.00 0.00 0.00 3.16
1719 1743 5.128827 ACGATTCATGGTACTGACTATTGGT 59.871 40.000 0.00 0.00 0.00 3.67
1720 1744 5.463392 CGATTCATGGTACTGACTATTGGTG 59.537 44.000 0.00 0.00 0.00 4.17
1721 1745 4.137116 TCATGGTACTGACTATTGGTGC 57.863 45.455 0.00 0.00 0.00 5.01
1722 1746 3.774766 TCATGGTACTGACTATTGGTGCT 59.225 43.478 0.00 0.00 0.00 4.40
1723 1747 3.887621 TGGTACTGACTATTGGTGCTC 57.112 47.619 0.00 0.00 0.00 4.26
1724 1748 2.500098 TGGTACTGACTATTGGTGCTCC 59.500 50.000 0.00 0.00 0.00 4.70
1725 1749 2.766828 GGTACTGACTATTGGTGCTCCT 59.233 50.000 6.34 0.00 34.23 3.69
1726 1750 3.430929 GGTACTGACTATTGGTGCTCCTG 60.431 52.174 6.34 0.00 34.23 3.86
1727 1751 2.260822 ACTGACTATTGGTGCTCCTGT 58.739 47.619 6.34 0.21 34.23 4.00
1728 1752 2.027745 ACTGACTATTGGTGCTCCTGTG 60.028 50.000 6.34 0.00 34.23 3.66
1729 1753 1.977854 TGACTATTGGTGCTCCTGTGT 59.022 47.619 6.34 0.20 34.23 3.72
1730 1754 2.371841 TGACTATTGGTGCTCCTGTGTT 59.628 45.455 6.34 0.00 34.23 3.32
1731 1755 3.181445 TGACTATTGGTGCTCCTGTGTTT 60.181 43.478 6.34 0.00 34.23 2.83
1732 1756 4.041075 TGACTATTGGTGCTCCTGTGTTTA 59.959 41.667 6.34 0.00 34.23 2.01
1733 1757 4.980573 ACTATTGGTGCTCCTGTGTTTAA 58.019 39.130 6.34 0.00 34.23 1.52
1734 1758 4.760204 ACTATTGGTGCTCCTGTGTTTAAC 59.240 41.667 6.34 0.00 34.23 2.01
1735 1759 3.290948 TTGGTGCTCCTGTGTTTAACT 57.709 42.857 6.34 0.00 34.23 2.24
1736 1760 3.290948 TGGTGCTCCTGTGTTTAACTT 57.709 42.857 6.34 0.00 34.23 2.66
1737 1761 2.948979 TGGTGCTCCTGTGTTTAACTTG 59.051 45.455 6.34 0.00 34.23 3.16
1738 1762 2.293399 GGTGCTCCTGTGTTTAACTTGG 59.707 50.000 0.00 0.00 0.00 3.61
1739 1763 3.211045 GTGCTCCTGTGTTTAACTTGGA 58.789 45.455 0.00 1.05 33.31 3.53
1740 1764 3.821033 GTGCTCCTGTGTTTAACTTGGAT 59.179 43.478 0.00 0.00 33.69 3.41
1741 1765 3.820467 TGCTCCTGTGTTTAACTTGGATG 59.180 43.478 0.00 0.00 33.69 3.51
1742 1766 3.191371 GCTCCTGTGTTTAACTTGGATGG 59.809 47.826 0.00 0.00 33.69 3.51
1743 1767 4.398319 CTCCTGTGTTTAACTTGGATGGT 58.602 43.478 0.00 0.00 33.69 3.55
1744 1768 4.141287 TCCTGTGTTTAACTTGGATGGTG 58.859 43.478 0.00 0.00 30.68 4.17
1745 1769 4.141287 CCTGTGTTTAACTTGGATGGTGA 58.859 43.478 0.00 0.00 0.00 4.02
1746 1770 4.582656 CCTGTGTTTAACTTGGATGGTGAA 59.417 41.667 0.00 0.00 0.00 3.18
1747 1771 5.278463 CCTGTGTTTAACTTGGATGGTGAAG 60.278 44.000 0.00 0.00 0.00 3.02
1748 1772 5.197451 TGTGTTTAACTTGGATGGTGAAGT 58.803 37.500 0.00 0.00 33.75 3.01
1749 1773 5.654650 TGTGTTTAACTTGGATGGTGAAGTT 59.345 36.000 0.00 0.00 43.28 2.66
1750 1774 6.183360 TGTGTTTAACTTGGATGGTGAAGTTC 60.183 38.462 0.00 0.00 40.69 3.01
1751 1775 6.039382 GTGTTTAACTTGGATGGTGAAGTTCT 59.961 38.462 4.17 0.00 40.69 3.01
1752 1776 6.605594 TGTTTAACTTGGATGGTGAAGTTCTT 59.394 34.615 4.17 0.00 40.69 2.52
1753 1777 6.633500 TTAACTTGGATGGTGAAGTTCTTG 57.367 37.500 4.17 0.00 40.69 3.02
1754 1778 3.490348 ACTTGGATGGTGAAGTTCTTGG 58.510 45.455 4.17 0.00 0.00 3.61
1755 1779 1.909700 TGGATGGTGAAGTTCTTGGC 58.090 50.000 4.17 0.00 0.00 4.52
1756 1780 1.144708 TGGATGGTGAAGTTCTTGGCA 59.855 47.619 4.17 0.00 0.00 4.92
1757 1781 2.225091 TGGATGGTGAAGTTCTTGGCAT 60.225 45.455 4.17 0.00 0.00 4.40
1758 1782 2.165030 GGATGGTGAAGTTCTTGGCATG 59.835 50.000 4.17 0.00 0.00 4.06
1759 1783 2.655090 TGGTGAAGTTCTTGGCATGA 57.345 45.000 4.17 0.00 0.00 3.07
1760 1784 3.159213 TGGTGAAGTTCTTGGCATGAT 57.841 42.857 4.17 0.00 0.00 2.45
1761 1785 3.499338 TGGTGAAGTTCTTGGCATGATT 58.501 40.909 4.17 0.00 0.00 2.57
1762 1786 3.256383 TGGTGAAGTTCTTGGCATGATTG 59.744 43.478 4.17 0.00 0.00 2.67
1763 1787 3.507233 GGTGAAGTTCTTGGCATGATTGA 59.493 43.478 4.17 0.00 0.00 2.57
1764 1788 4.159135 GGTGAAGTTCTTGGCATGATTGAT 59.841 41.667 4.17 0.00 0.00 2.57
1765 1789 5.337009 GGTGAAGTTCTTGGCATGATTGATT 60.337 40.000 4.17 0.00 0.00 2.57
1766 1790 5.575606 GTGAAGTTCTTGGCATGATTGATTG 59.424 40.000 4.17 0.00 0.00 2.67
1767 1791 4.730949 AGTTCTTGGCATGATTGATTGG 57.269 40.909 3.72 0.00 0.00 3.16
1768 1792 4.091549 AGTTCTTGGCATGATTGATTGGT 58.908 39.130 3.72 0.00 0.00 3.67
1769 1793 4.529377 AGTTCTTGGCATGATTGATTGGTT 59.471 37.500 3.72 0.00 0.00 3.67
1770 1794 5.012354 AGTTCTTGGCATGATTGATTGGTTT 59.988 36.000 3.72 0.00 0.00 3.27
1771 1795 6.211184 AGTTCTTGGCATGATTGATTGGTTTA 59.789 34.615 3.72 0.00 0.00 2.01
1772 1796 6.211587 TCTTGGCATGATTGATTGGTTTAG 57.788 37.500 0.00 0.00 0.00 1.85
1773 1797 4.389890 TGGCATGATTGATTGGTTTAGC 57.610 40.909 0.00 0.00 0.00 3.09
1774 1798 3.132646 TGGCATGATTGATTGGTTTAGCC 59.867 43.478 0.00 0.00 38.82 3.93
1775 1799 3.374745 GCATGATTGATTGGTTTAGCCG 58.625 45.455 0.00 0.00 41.21 5.52
1776 1800 3.066621 GCATGATTGATTGGTTTAGCCGA 59.933 43.478 0.00 0.00 41.21 5.54
1777 1801 4.261741 GCATGATTGATTGGTTTAGCCGAT 60.262 41.667 0.00 0.00 44.07 4.18
1786 1810 6.992063 ATTGGTTTAGCCGATCATATGATC 57.008 37.500 28.70 28.70 45.60 2.92
1787 1811 5.745312 TGGTTTAGCCGATCATATGATCT 57.255 39.130 32.66 21.66 46.58 2.75
1788 1812 5.482006 TGGTTTAGCCGATCATATGATCTG 58.518 41.667 32.66 28.81 46.58 2.90
1789 1813 5.245977 TGGTTTAGCCGATCATATGATCTGA 59.754 40.000 32.66 17.96 46.58 3.27
1790 1814 6.166279 GGTTTAGCCGATCATATGATCTGAA 58.834 40.000 32.66 21.40 46.58 3.02
1791 1815 6.650807 GGTTTAGCCGATCATATGATCTGAAA 59.349 38.462 32.66 24.43 46.58 2.69
1792 1816 7.335422 GGTTTAGCCGATCATATGATCTGAAAT 59.665 37.037 32.66 21.36 46.58 2.17
1793 1817 8.725148 GTTTAGCCGATCATATGATCTGAAATT 58.275 33.333 32.66 19.25 46.58 1.82
1794 1818 8.853077 TTAGCCGATCATATGATCTGAAATTT 57.147 30.769 32.66 18.18 46.58 1.82
1795 1819 7.142306 AGCCGATCATATGATCTGAAATTTG 57.858 36.000 32.66 19.46 46.58 2.32
1796 1820 5.798934 GCCGATCATATGATCTGAAATTTGC 59.201 40.000 32.66 21.52 46.58 3.68
1797 1821 6.569035 GCCGATCATATGATCTGAAATTTGCA 60.569 38.462 32.66 0.00 46.58 4.08
1798 1822 7.364970 CCGATCATATGATCTGAAATTTGCAA 58.635 34.615 32.66 0.00 46.58 4.08
1799 1823 7.537649 CCGATCATATGATCTGAAATTTGCAAG 59.462 37.037 32.66 17.80 46.58 4.01
1800 1824 8.287503 CGATCATATGATCTGAAATTTGCAAGA 58.712 33.333 32.66 0.00 46.58 3.02
1801 1825 9.961265 GATCATATGATCTGAAATTTGCAAGAA 57.039 29.630 30.37 0.00 45.60 2.52
1807 1831 9.667107 ATGATCTGAAATTTGCAAGAAAATCAT 57.333 25.926 0.00 6.98 0.00 2.45
1808 1832 9.146984 TGATCTGAAATTTGCAAGAAAATCATC 57.853 29.630 0.00 0.00 0.00 2.92
1809 1833 9.367444 GATCTGAAATTTGCAAGAAAATCATCT 57.633 29.630 0.00 0.00 0.00 2.90
1810 1834 8.528917 TCTGAAATTTGCAAGAAAATCATCTG 57.471 30.769 0.00 0.00 0.00 2.90
1811 1835 8.361889 TCTGAAATTTGCAAGAAAATCATCTGA 58.638 29.630 0.00 0.80 0.00 3.27
1812 1836 8.528917 TGAAATTTGCAAGAAAATCATCTGAG 57.471 30.769 0.00 0.00 0.00 3.35
1813 1837 8.145767 TGAAATTTGCAAGAAAATCATCTGAGT 58.854 29.630 0.00 0.00 0.00 3.41
1814 1838 8.897872 AAATTTGCAAGAAAATCATCTGAGTT 57.102 26.923 0.00 0.00 33.37 3.01
1815 1839 8.897872 AATTTGCAAGAAAATCATCTGAGTTT 57.102 26.923 5.40 5.40 43.82 2.66
1823 1847 7.065216 GAAAATCATCTGAGTTTCGTGATGA 57.935 36.000 14.88 4.15 45.12 2.92
1824 1848 7.439157 AAAATCATCTGAGTTTCGTGATGAA 57.561 32.000 14.11 0.00 45.27 2.57
1825 1849 6.414408 AATCATCTGAGTTTCGTGATGAAC 57.586 37.500 14.11 0.00 45.27 3.18
1826 1850 5.139435 TCATCTGAGTTTCGTGATGAACT 57.861 39.130 0.00 0.00 41.25 3.01
1827 1851 5.541845 TCATCTGAGTTTCGTGATGAACTT 58.458 37.500 0.00 0.00 41.25 2.66
1828 1852 6.687604 TCATCTGAGTTTCGTGATGAACTTA 58.312 36.000 0.00 0.00 41.25 2.24
1829 1853 7.151976 TCATCTGAGTTTCGTGATGAACTTAA 58.848 34.615 0.00 0.00 41.25 1.85
1830 1854 7.819415 TCATCTGAGTTTCGTGATGAACTTAAT 59.181 33.333 0.00 0.00 41.25 1.40
1831 1855 9.087424 CATCTGAGTTTCGTGATGAACTTAATA 57.913 33.333 0.00 0.00 38.72 0.98
1832 1856 9.653287 ATCTGAGTTTCGTGATGAACTTAATAA 57.347 29.630 0.00 0.00 35.97 1.40
1833 1857 9.483916 TCTGAGTTTCGTGATGAACTTAATAAA 57.516 29.630 0.00 0.00 35.97 1.40
1834 1858 9.530129 CTGAGTTTCGTGATGAACTTAATAAAC 57.470 33.333 0.00 0.00 35.97 2.01
1835 1859 8.500773 TGAGTTTCGTGATGAACTTAATAAACC 58.499 33.333 0.00 0.00 35.97 3.27
1836 1860 8.385898 AGTTTCGTGATGAACTTAATAAACCA 57.614 30.769 0.00 0.00 35.97 3.67
1837 1861 8.504005 AGTTTCGTGATGAACTTAATAAACCAG 58.496 33.333 0.00 0.00 35.97 4.00
1838 1862 6.978343 TCGTGATGAACTTAATAAACCAGG 57.022 37.500 0.00 0.00 0.00 4.45
1839 1863 6.703319 TCGTGATGAACTTAATAAACCAGGA 58.297 36.000 0.00 0.00 0.00 3.86
1840 1864 6.592607 TCGTGATGAACTTAATAAACCAGGAC 59.407 38.462 0.00 0.00 0.00 3.85
1841 1865 6.455113 CGTGATGAACTTAATAAACCAGGACG 60.455 42.308 0.00 0.00 0.00 4.79
1842 1866 6.370718 GTGATGAACTTAATAAACCAGGACGT 59.629 38.462 0.00 0.00 0.00 4.34
1843 1867 6.370442 TGATGAACTTAATAAACCAGGACGTG 59.630 38.462 0.00 0.00 0.00 4.49
1844 1868 5.613329 TGAACTTAATAAACCAGGACGTGT 58.387 37.500 0.00 0.00 0.00 4.49
1845 1869 5.467399 TGAACTTAATAAACCAGGACGTGTG 59.533 40.000 0.00 0.00 0.00 3.82
1846 1870 5.217978 ACTTAATAAACCAGGACGTGTGA 57.782 39.130 0.00 0.00 0.00 3.58
1847 1871 5.613329 ACTTAATAAACCAGGACGTGTGAA 58.387 37.500 0.00 0.00 0.00 3.18
1848 1872 5.467735 ACTTAATAAACCAGGACGTGTGAAC 59.532 40.000 0.00 0.00 0.00 3.18
1849 1873 3.764237 ATAAACCAGGACGTGTGAACT 57.236 42.857 0.00 0.00 0.00 3.01
1850 1874 1.663695 AAACCAGGACGTGTGAACTG 58.336 50.000 0.00 0.00 0.00 3.16
1851 1875 4.361253 CCAGGACGTGTGAACTGG 57.639 61.111 0.00 0.00 43.87 4.00
1852 1876 1.961277 CCAGGACGTGTGAACTGGC 60.961 63.158 0.00 0.00 43.41 4.85
1853 1877 1.227527 CAGGACGTGTGAACTGGCA 60.228 57.895 0.00 0.00 0.00 4.92
1854 1878 1.069765 AGGACGTGTGAACTGGCAG 59.930 57.895 14.16 14.16 0.00 4.85
1855 1879 1.961277 GGACGTGTGAACTGGCAGG 60.961 63.158 20.34 0.96 0.00 4.85
1856 1880 1.227556 GACGTGTGAACTGGCAGGT 60.228 57.895 20.34 13.55 36.58 4.00
1857 1881 0.032952 GACGTGTGAACTGGCAGGTA 59.967 55.000 20.34 1.16 34.44 3.08
1858 1882 0.466543 ACGTGTGAACTGGCAGGTAA 59.533 50.000 20.34 1.13 32.83 2.85
1859 1883 0.865769 CGTGTGAACTGGCAGGTAAC 59.134 55.000 20.34 16.90 0.00 2.50
1860 1884 1.808512 CGTGTGAACTGGCAGGTAACA 60.809 52.381 19.06 19.06 41.41 2.41
1861 1885 1.602377 GTGTGAACTGGCAGGTAACAC 59.398 52.381 31.87 31.87 41.41 3.32
1862 1886 1.235724 GTGAACTGGCAGGTAACACC 58.764 55.000 15.47 0.00 38.99 4.16
1863 1887 0.109723 TGAACTGGCAGGTAACACCC 59.890 55.000 20.34 0.00 39.75 4.61
1864 1888 0.400594 GAACTGGCAGGTAACACCCT 59.599 55.000 20.34 0.00 39.75 4.34
1865 1889 1.626825 GAACTGGCAGGTAACACCCTA 59.373 52.381 20.34 0.00 39.75 3.53
1866 1890 1.966845 ACTGGCAGGTAACACCCTAT 58.033 50.000 20.34 0.00 39.75 2.57
1867 1891 3.124856 ACTGGCAGGTAACACCCTATA 57.875 47.619 20.34 0.00 39.75 1.31
1868 1892 3.456842 ACTGGCAGGTAACACCCTATAA 58.543 45.455 20.34 0.00 39.75 0.98
1869 1893 3.847780 ACTGGCAGGTAACACCCTATAAA 59.152 43.478 20.34 0.00 39.75 1.40
1870 1894 4.290196 ACTGGCAGGTAACACCCTATAAAA 59.710 41.667 20.34 0.00 39.75 1.52
1871 1895 4.591929 TGGCAGGTAACACCCTATAAAAC 58.408 43.478 0.00 0.00 39.75 2.43
1872 1896 4.290196 TGGCAGGTAACACCCTATAAAACT 59.710 41.667 0.00 0.00 39.75 2.66
1873 1897 5.488203 TGGCAGGTAACACCCTATAAAACTA 59.512 40.000 0.00 0.00 39.75 2.24
1874 1898 6.159046 TGGCAGGTAACACCCTATAAAACTAT 59.841 38.462 0.00 0.00 39.75 2.12
1875 1899 7.058525 GGCAGGTAACACCCTATAAAACTATT 58.941 38.462 0.00 0.00 39.75 1.73
1876 1900 8.212995 GGCAGGTAACACCCTATAAAACTATTA 58.787 37.037 0.00 0.00 39.75 0.98
1877 1901 9.788889 GCAGGTAACACCCTATAAAACTATTAT 57.211 33.333 0.00 0.00 39.75 1.28
1950 1974 8.977412 ACATTGACTTAATTAAATTACAGGGGG 58.023 33.333 0.00 0.00 0.00 5.40
2016 2040 5.929992 TGTCTTCCTACTTTCACGGTAAATG 59.070 40.000 0.00 0.00 0.00 2.32
2189 2213 2.277373 CAGCTACGTCGAGGTCGC 60.277 66.667 22.66 22.66 39.60 5.19
2245 2270 7.502120 AGTCATTGTAGCATTATCCATGTTC 57.498 36.000 0.00 0.00 34.98 3.18
2320 2345 2.472909 GCCGTGCTAACCATGCTCC 61.473 63.158 0.00 0.00 0.00 4.70
2393 2418 9.739276 TTAAGTGAATACTTGTCATTCCTTGAT 57.261 29.630 3.11 0.00 46.28 2.57
2431 2456 0.322975 TGTTCTTCTCCAGCTGAGGC 59.677 55.000 17.39 2.36 41.76 4.70
2436 2461 0.700564 TTCTCCAGCTGAGGCCAAAT 59.299 50.000 17.39 0.00 41.76 2.32
2557 2582 0.692756 TGGCATCGGGGATAACCTCA 60.693 55.000 0.00 0.00 40.03 3.86
2579 2604 5.991606 TCAGTTATCTTTGAGTGACTGGTTG 59.008 40.000 0.00 0.00 36.17 3.77
2581 2606 3.864789 ATCTTTGAGTGACTGGTTGGT 57.135 42.857 0.00 0.00 0.00 3.67
2622 2649 7.039313 ACTTGTGTTGAACCTTATTTCCTTC 57.961 36.000 0.00 0.00 0.00 3.46
2693 2721 6.057321 ACCTTATGACCTCCGTTGATTTAA 57.943 37.500 0.00 0.00 0.00 1.52
2819 2855 1.216930 AGTTGGTTGGTTTAGGTGCCT 59.783 47.619 0.00 0.00 0.00 4.75
2841 2877 6.728411 CCTTCCTAGTTTATTAACCCCTTGT 58.272 40.000 0.00 0.00 34.71 3.16
2851 2887 2.223803 AACCCCTTGTTGTGTGTTGA 57.776 45.000 0.00 0.00 35.31 3.18
2852 2888 2.223803 ACCCCTTGTTGTGTGTTGAA 57.776 45.000 0.00 0.00 0.00 2.69
2853 2889 1.822371 ACCCCTTGTTGTGTGTTGAAC 59.178 47.619 0.00 0.00 0.00 3.18
2920 2956 2.125350 GAGTGAGGCAAGCGGGAG 60.125 66.667 0.00 0.00 0.00 4.30
2964 3001 3.039134 CAAAAGGAACGCCCGCTT 58.961 55.556 0.00 0.00 40.87 4.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.093306 ACCATGCGTTCAAATCTCGA 57.907 45.000 0.00 0.00 0.00 4.04
1 2 2.900122 AACCATGCGTTCAAATCTCG 57.100 45.000 0.00 0.00 0.00 4.04
2 3 5.938322 TCTTAAACCATGCGTTCAAATCTC 58.062 37.500 0.83 0.00 31.78 2.75
3 4 5.705441 TCTCTTAAACCATGCGTTCAAATCT 59.295 36.000 0.83 0.00 31.78 2.40
4 5 5.938322 TCTCTTAAACCATGCGTTCAAATC 58.062 37.500 0.83 0.00 31.78 2.17
5 6 5.957842 TCTCTTAAACCATGCGTTCAAAT 57.042 34.783 0.83 0.00 31.78 2.32
6 7 5.957842 ATCTCTTAAACCATGCGTTCAAA 57.042 34.783 0.83 0.00 31.78 2.69
7 8 7.441890 TTTATCTCTTAAACCATGCGTTCAA 57.558 32.000 0.83 0.00 31.78 2.69
8 9 7.465379 CGATTTATCTCTTAAACCATGCGTTCA 60.465 37.037 0.83 0.00 32.71 3.18
9 10 6.846283 CGATTTATCTCTTAAACCATGCGTTC 59.154 38.462 0.83 0.00 32.71 3.95
10 11 6.315393 ACGATTTATCTCTTAAACCATGCGTT 59.685 34.615 0.00 0.00 32.71 4.84
11 12 5.815740 ACGATTTATCTCTTAAACCATGCGT 59.184 36.000 0.00 0.00 32.71 5.24
12 13 6.287107 ACGATTTATCTCTTAAACCATGCG 57.713 37.500 0.00 0.00 32.71 4.73
13 14 8.798153 CAAAACGATTTATCTCTTAAACCATGC 58.202 33.333 0.00 0.00 32.71 4.06
23 24 9.681062 TCCCTTTATTCAAAACGATTTATCTCT 57.319 29.630 0.00 0.00 0.00 3.10
29 30 9.238368 TGTAGATCCCTTTATTCAAAACGATTT 57.762 29.630 0.00 0.00 0.00 2.17
30 31 8.801882 TGTAGATCCCTTTATTCAAAACGATT 57.198 30.769 0.00 0.00 0.00 3.34
31 32 8.801882 TTGTAGATCCCTTTATTCAAAACGAT 57.198 30.769 0.00 0.00 0.00 3.73
32 33 8.624367 TTTGTAGATCCCTTTATTCAAAACGA 57.376 30.769 0.00 0.00 0.00 3.85
33 34 9.685828 TTTTTGTAGATCCCTTTATTCAAAACG 57.314 29.630 0.00 0.00 34.72 3.60
57 58 5.247337 TCACAACCTTGGAGTTTTCCTTTTT 59.753 36.000 0.00 0.00 44.36 1.94
58 59 4.775253 TCACAACCTTGGAGTTTTCCTTTT 59.225 37.500 0.00 0.00 44.36 2.27
59 60 4.159693 GTCACAACCTTGGAGTTTTCCTTT 59.840 41.667 0.00 0.00 44.36 3.11
60 61 3.699538 GTCACAACCTTGGAGTTTTCCTT 59.300 43.478 0.00 0.00 44.36 3.36
61 62 3.288092 GTCACAACCTTGGAGTTTTCCT 58.712 45.455 0.00 0.00 44.36 3.36
62 63 3.020984 TGTCACAACCTTGGAGTTTTCC 58.979 45.455 0.00 0.00 44.31 3.13
63 64 4.157840 ACTTGTCACAACCTTGGAGTTTTC 59.842 41.667 0.00 0.00 0.00 2.29
64 65 4.082245 CACTTGTCACAACCTTGGAGTTTT 60.082 41.667 0.00 0.00 0.00 2.43
65 66 3.443681 CACTTGTCACAACCTTGGAGTTT 59.556 43.478 0.00 0.00 0.00 2.66
66 67 3.016736 CACTTGTCACAACCTTGGAGTT 58.983 45.455 0.00 0.00 0.00 3.01
67 68 2.238646 TCACTTGTCACAACCTTGGAGT 59.761 45.455 0.00 0.00 0.00 3.85
68 69 2.614057 GTCACTTGTCACAACCTTGGAG 59.386 50.000 0.00 0.00 0.00 3.86
69 70 2.639065 GTCACTTGTCACAACCTTGGA 58.361 47.619 0.00 0.00 0.00 3.53
70 71 1.330521 CGTCACTTGTCACAACCTTGG 59.669 52.381 0.00 0.00 0.00 3.61
71 72 1.268032 GCGTCACTTGTCACAACCTTG 60.268 52.381 0.00 0.00 0.00 3.61
72 73 1.014352 GCGTCACTTGTCACAACCTT 58.986 50.000 0.00 0.00 0.00 3.50
73 74 0.107897 TGCGTCACTTGTCACAACCT 60.108 50.000 0.00 0.00 0.00 3.50
74 75 0.027586 GTGCGTCACTTGTCACAACC 59.972 55.000 0.00 0.00 0.00 3.77
75 76 0.724549 TGTGCGTCACTTGTCACAAC 59.275 50.000 10.54 0.00 36.62 3.32
76 77 1.330213 CATGTGCGTCACTTGTCACAA 59.670 47.619 13.76 0.00 41.92 3.33
77 78 0.936600 CATGTGCGTCACTTGTCACA 59.063 50.000 13.76 0.00 42.66 3.58
78 79 0.384725 GCATGTGCGTCACTTGTCAC 60.385 55.000 19.26 3.94 40.25 3.67
79 80 0.813210 TGCATGTGCGTCACTTGTCA 60.813 50.000 19.26 15.96 45.83 3.58
80 81 0.110509 CTGCATGTGCGTCACTTGTC 60.111 55.000 19.26 14.46 45.83 3.18
81 82 1.944035 CTGCATGTGCGTCACTTGT 59.056 52.632 19.26 3.84 45.83 3.16
82 83 1.441515 GCTGCATGTGCGTCACTTG 60.442 57.895 16.17 16.17 45.83 3.16
83 84 2.949106 GCTGCATGTGCGTCACTT 59.051 55.556 10.54 2.86 45.83 3.16
103 104 2.639286 CAGGTTGCGACAAGTGGC 59.361 61.111 6.39 0.00 34.76 5.01
104 105 2.260869 CCCAGGTTGCGACAAGTGG 61.261 63.158 6.39 9.17 0.00 4.00
105 106 2.260869 CCCCAGGTTGCGACAAGTG 61.261 63.158 6.39 0.00 0.00 3.16
106 107 1.990160 TTCCCCAGGTTGCGACAAGT 61.990 55.000 6.39 0.00 0.00 3.16
107 108 1.228124 TTCCCCAGGTTGCGACAAG 60.228 57.895 6.39 0.00 0.00 3.16
108 109 1.228124 CTTCCCCAGGTTGCGACAA 60.228 57.895 6.39 0.00 0.00 3.18
109 110 1.990160 AACTTCCCCAGGTTGCGACA 61.990 55.000 6.39 0.00 0.00 4.35
110 111 1.228154 AACTTCCCCAGGTTGCGAC 60.228 57.895 0.00 0.00 0.00 5.19
111 112 1.228124 CAACTTCCCCAGGTTGCGA 60.228 57.895 0.00 0.00 36.78 5.10
112 113 2.268076 CCAACTTCCCCAGGTTGCG 61.268 63.158 0.00 0.00 40.75 4.85
113 114 0.895559 CTCCAACTTCCCCAGGTTGC 60.896 60.000 0.00 0.00 40.75 4.17
114 115 0.478507 ACTCCAACTTCCCCAGGTTG 59.521 55.000 0.00 0.00 41.46 3.77
115 116 0.478507 CACTCCAACTTCCCCAGGTT 59.521 55.000 0.00 0.00 0.00 3.50
116 117 0.401395 TCACTCCAACTTCCCCAGGT 60.401 55.000 0.00 0.00 0.00 4.00
117 118 0.995024 ATCACTCCAACTTCCCCAGG 59.005 55.000 0.00 0.00 0.00 4.45
118 119 1.912043 AGATCACTCCAACTTCCCCAG 59.088 52.381 0.00 0.00 0.00 4.45
119 120 2.044793 AGATCACTCCAACTTCCCCA 57.955 50.000 0.00 0.00 0.00 4.96
120 121 3.108376 AGTAGATCACTCCAACTTCCCC 58.892 50.000 0.00 0.00 28.33 4.81
121 122 4.394439 GAGTAGATCACTCCAACTTCCC 57.606 50.000 11.90 0.00 46.94 3.97
131 132 7.682787 ATCACCAATTAAGGAGTAGATCACT 57.317 36.000 0.00 0.00 41.47 3.41
132 133 8.738645 AAATCACCAATTAAGGAGTAGATCAC 57.261 34.615 0.00 0.00 0.00 3.06
133 134 7.710907 CGAAATCACCAATTAAGGAGTAGATCA 59.289 37.037 0.00 0.00 0.00 2.92
134 135 7.171678 CCGAAATCACCAATTAAGGAGTAGATC 59.828 40.741 0.00 0.00 0.00 2.75
135 136 6.992715 CCGAAATCACCAATTAAGGAGTAGAT 59.007 38.462 0.00 0.00 0.00 1.98
136 137 6.346096 CCGAAATCACCAATTAAGGAGTAGA 58.654 40.000 0.00 0.00 0.00 2.59
137 138 5.527582 CCCGAAATCACCAATTAAGGAGTAG 59.472 44.000 0.00 0.00 0.00 2.57
138 139 5.433526 CCCGAAATCACCAATTAAGGAGTA 58.566 41.667 0.00 0.00 0.00 2.59
139 140 4.270008 CCCGAAATCACCAATTAAGGAGT 58.730 43.478 0.00 0.00 0.00 3.85
140 141 3.632145 CCCCGAAATCACCAATTAAGGAG 59.368 47.826 0.00 0.00 0.00 3.69
141 142 3.267291 TCCCCGAAATCACCAATTAAGGA 59.733 43.478 0.00 0.00 0.00 3.36
142 143 3.626930 TCCCCGAAATCACCAATTAAGG 58.373 45.455 0.00 0.00 0.00 2.69
143 144 5.652994 TTTCCCCGAAATCACCAATTAAG 57.347 39.130 0.00 0.00 0.00 1.85
144 145 5.565045 CGTTTTCCCCGAAATCACCAATTAA 60.565 40.000 0.00 0.00 31.34 1.40
145 146 4.082679 CGTTTTCCCCGAAATCACCAATTA 60.083 41.667 0.00 0.00 31.34 1.40
146 147 3.305744 CGTTTTCCCCGAAATCACCAATT 60.306 43.478 0.00 0.00 31.34 2.32
147 148 2.230266 CGTTTTCCCCGAAATCACCAAT 59.770 45.455 0.00 0.00 31.34 3.16
148 149 1.609555 CGTTTTCCCCGAAATCACCAA 59.390 47.619 0.00 0.00 31.34 3.67
149 150 1.240256 CGTTTTCCCCGAAATCACCA 58.760 50.000 0.00 0.00 31.34 4.17
150 151 1.068816 CACGTTTTCCCCGAAATCACC 60.069 52.381 0.00 0.00 31.34 4.02
151 152 1.664874 GCACGTTTTCCCCGAAATCAC 60.665 52.381 0.00 0.00 31.34 3.06
152 153 0.594110 GCACGTTTTCCCCGAAATCA 59.406 50.000 0.00 0.00 31.34 2.57
153 154 0.453782 CGCACGTTTTCCCCGAAATC 60.454 55.000 0.00 0.00 31.34 2.17
154 155 1.577421 CGCACGTTTTCCCCGAAAT 59.423 52.632 0.00 0.00 31.34 2.17
155 156 2.544698 CCGCACGTTTTCCCCGAAA 61.545 57.895 0.00 0.00 0.00 3.46
156 157 2.973600 CCGCACGTTTTCCCCGAA 60.974 61.111 0.00 0.00 0.00 4.30
157 158 4.238654 ACCGCACGTTTTCCCCGA 62.239 61.111 0.00 0.00 0.00 5.14
158 159 3.719144 GACCGCACGTTTTCCCCG 61.719 66.667 0.00 0.00 0.00 5.73
264 266 1.354368 TGAGGGTTGGACTGGATTTCC 59.646 52.381 0.00 0.00 0.00 3.13
336 338 2.821366 GTGATGTGCCTCCTGCGG 60.821 66.667 0.00 0.00 45.60 5.69
338 340 1.451028 GAGGTGATGTGCCTCCTGC 60.451 63.158 0.12 0.00 45.05 4.85
382 386 1.367840 GAGTCTGGTGGCGTGTTCT 59.632 57.895 0.00 0.00 0.00 3.01
383 387 1.668151 GGAGTCTGGTGGCGTGTTC 60.668 63.158 0.00 0.00 0.00 3.18
516 520 2.159382 GGATTTTCTGCTTCCACGGAA 58.841 47.619 0.00 0.00 33.10 4.30
517 521 1.613255 GGGATTTTCTGCTTCCACGGA 60.613 52.381 0.00 0.00 0.00 4.69
521 525 0.404040 ACGGGGATTTTCTGCTTCCA 59.596 50.000 0.00 0.00 0.00 3.53
539 543 4.144703 GTCGGGGAGAAGCGGGAC 62.145 72.222 0.00 0.00 0.00 4.46
546 550 3.379445 GTCAGCCGTCGGGGAGAA 61.379 66.667 14.38 0.00 38.47 2.87
662 666 1.891919 GTGGCCTTGTCGACTGCAA 60.892 57.895 17.92 7.66 0.00 4.08
679 697 1.770294 TTTGGGAGAAAACTTGCCGT 58.230 45.000 0.00 0.00 0.00 5.68
706 725 4.087892 CGCTGTCACTCCTGGGGG 62.088 72.222 0.00 0.00 0.00 5.40
720 739 2.622962 GGGCAAAACCTAACGCGCT 61.623 57.895 5.73 0.00 39.10 5.92
726 745 0.945813 CGTCGTTGGGCAAAACCTAA 59.054 50.000 0.00 0.00 36.36 2.69
795 814 4.728102 CGGTGCAACGGCGGTCTA 62.728 66.667 18.51 0.00 45.35 2.59
820 839 1.494716 CCGGTGGGGAAGTTAGGGTT 61.495 60.000 0.00 0.00 38.47 4.11
914 933 9.790344 AGCAGATAAAGCATAGAGATTAATTGT 57.210 29.630 0.00 0.00 0.00 2.71
934 956 9.750783 AAGGCATGATAAATATTAAGAGCAGAT 57.249 29.630 0.00 0.00 0.00 2.90
1001 1025 2.691526 GCTTCAGCATTTCCATCCATCA 59.308 45.455 0.00 0.00 41.59 3.07
1006 1030 4.338682 AGAATCAGCTTCAGCATTTCCATC 59.661 41.667 0.75 0.00 45.16 3.51
1106 1130 9.757227 TTTATCCAATGTTTCTTTGTCGAAAAT 57.243 25.926 0.00 0.00 34.93 1.82
1147 1171 2.352960 GACTTTCACAATCGATGGAGCC 59.647 50.000 6.84 0.00 0.00 4.70
1172 1196 4.976224 ATCCCGTGCTAAATGGTTTTAC 57.024 40.909 0.00 0.00 32.33 2.01
1256 1280 3.304559 CGGACTTGTATCTTCTCTTTGCG 59.695 47.826 0.00 0.00 0.00 4.85
1272 1296 5.878406 ATCTCCATCAGAATAACGGACTT 57.122 39.130 0.00 0.00 33.62 3.01
1279 1303 6.737720 ACAGCAGTATCTCCATCAGAATAA 57.262 37.500 0.00 0.00 33.62 1.40
1335 1359 4.299155 ACGTGCATACAGTATAGTCATGC 58.701 43.478 13.40 13.40 41.81 4.06
1336 1360 7.924103 TTTACGTGCATACAGTATAGTCATG 57.076 36.000 0.00 1.00 0.00 3.07
1351 1375 1.335496 GCCTTTCCAGTTTTACGTGCA 59.665 47.619 0.00 0.00 0.00 4.57
1409 1433 7.472334 AAAGACTCACAATCTTTTGGCATAT 57.528 32.000 0.00 0.00 42.46 1.78
1561 1585 9.520515 ACAGGTACAATCATCTAAACTGAAAAT 57.479 29.630 0.00 0.00 0.00 1.82
1624 1648 4.450419 CACAGGACAAGTGAATGAGAAGAC 59.550 45.833 0.00 0.00 39.30 3.01
1664 1688 5.954153 ATCAGAATCTGTGTCAGGATCTT 57.046 39.130 10.36 0.00 32.61 2.40
1666 1690 9.421806 CTTAATATCAGAATCTGTGTCAGGATC 57.578 37.037 10.36 0.00 32.61 3.36
1669 1693 9.605275 TTTCTTAATATCAGAATCTGTGTCAGG 57.395 33.333 10.36 0.00 32.61 3.86
1671 1695 9.087424 CGTTTCTTAATATCAGAATCTGTGTCA 57.913 33.333 10.36 0.00 32.61 3.58
1672 1696 9.302345 TCGTTTCTTAATATCAGAATCTGTGTC 57.698 33.333 10.36 0.00 32.61 3.67
1673 1697 9.823647 ATCGTTTCTTAATATCAGAATCTGTGT 57.176 29.630 10.36 3.40 32.61 3.72
1680 1704 9.613428 ACCATGAATCGTTTCTTAATATCAGAA 57.387 29.630 7.68 0.00 32.78 3.02
1686 1710 9.309516 GTCAGTACCATGAATCGTTTCTTAATA 57.690 33.333 7.68 0.00 32.78 0.98
1687 1711 8.041323 AGTCAGTACCATGAATCGTTTCTTAAT 58.959 33.333 7.68 0.00 32.78 1.40
1688 1712 7.383687 AGTCAGTACCATGAATCGTTTCTTAA 58.616 34.615 7.68 0.00 32.78 1.85
1689 1713 6.931838 AGTCAGTACCATGAATCGTTTCTTA 58.068 36.000 7.68 0.00 32.78 2.10
1690 1714 5.794894 AGTCAGTACCATGAATCGTTTCTT 58.205 37.500 7.68 0.00 32.78 2.52
1691 1715 5.407407 AGTCAGTACCATGAATCGTTTCT 57.593 39.130 7.68 0.00 32.78 2.52
1692 1716 7.254455 CCAATAGTCAGTACCATGAATCGTTTC 60.254 40.741 0.00 0.00 0.00 2.78
1693 1717 6.538742 CCAATAGTCAGTACCATGAATCGTTT 59.461 38.462 0.00 0.00 0.00 3.60
1694 1718 6.049149 CCAATAGTCAGTACCATGAATCGTT 58.951 40.000 0.00 0.00 0.00 3.85
1695 1719 5.128827 ACCAATAGTCAGTACCATGAATCGT 59.871 40.000 0.00 0.00 0.00 3.73
1696 1720 5.463392 CACCAATAGTCAGTACCATGAATCG 59.537 44.000 0.00 0.00 0.00 3.34
1697 1721 5.237344 GCACCAATAGTCAGTACCATGAATC 59.763 44.000 0.00 0.00 0.00 2.52
1698 1722 5.104360 AGCACCAATAGTCAGTACCATGAAT 60.104 40.000 0.00 0.00 0.00 2.57
1699 1723 4.225042 AGCACCAATAGTCAGTACCATGAA 59.775 41.667 0.00 0.00 0.00 2.57
1700 1724 3.774766 AGCACCAATAGTCAGTACCATGA 59.225 43.478 0.00 0.00 0.00 3.07
1701 1725 4.122776 GAGCACCAATAGTCAGTACCATG 58.877 47.826 0.00 0.00 0.00 3.66
1702 1726 3.134804 GGAGCACCAATAGTCAGTACCAT 59.865 47.826 0.00 0.00 35.97 3.55
1703 1727 2.500098 GGAGCACCAATAGTCAGTACCA 59.500 50.000 0.00 0.00 35.97 3.25
1704 1728 2.766828 AGGAGCACCAATAGTCAGTACC 59.233 50.000 2.07 0.00 38.94 3.34
1705 1729 3.195825 ACAGGAGCACCAATAGTCAGTAC 59.804 47.826 2.07 0.00 38.94 2.73
1706 1730 3.195610 CACAGGAGCACCAATAGTCAGTA 59.804 47.826 2.07 0.00 38.94 2.74
1707 1731 2.027745 CACAGGAGCACCAATAGTCAGT 60.028 50.000 2.07 0.00 38.94 3.41
1708 1732 2.027745 ACACAGGAGCACCAATAGTCAG 60.028 50.000 2.07 0.00 38.94 3.51
1709 1733 1.977854 ACACAGGAGCACCAATAGTCA 59.022 47.619 2.07 0.00 38.94 3.41
1710 1734 2.770164 ACACAGGAGCACCAATAGTC 57.230 50.000 2.07 0.00 38.94 2.59
1711 1735 3.508845 AAACACAGGAGCACCAATAGT 57.491 42.857 2.07 0.00 38.94 2.12
1712 1736 5.003804 AGTTAAACACAGGAGCACCAATAG 58.996 41.667 2.07 0.00 38.94 1.73
1713 1737 4.980573 AGTTAAACACAGGAGCACCAATA 58.019 39.130 2.07 0.00 38.94 1.90
1714 1738 3.832527 AGTTAAACACAGGAGCACCAAT 58.167 40.909 2.07 0.00 38.94 3.16
1715 1739 3.290948 AGTTAAACACAGGAGCACCAA 57.709 42.857 2.07 0.00 38.94 3.67
1716 1740 2.948979 CAAGTTAAACACAGGAGCACCA 59.051 45.455 2.07 0.00 38.94 4.17
1717 1741 2.293399 CCAAGTTAAACACAGGAGCACC 59.707 50.000 0.00 0.00 0.00 5.01
1718 1742 3.211045 TCCAAGTTAAACACAGGAGCAC 58.789 45.455 0.00 0.00 30.55 4.40
1719 1743 3.569194 TCCAAGTTAAACACAGGAGCA 57.431 42.857 0.00 0.00 30.55 4.26
1720 1744 3.191371 CCATCCAAGTTAAACACAGGAGC 59.809 47.826 0.00 0.00 35.85 4.70
1721 1745 4.216257 CACCATCCAAGTTAAACACAGGAG 59.784 45.833 0.00 0.00 35.85 3.69
1722 1746 4.141287 CACCATCCAAGTTAAACACAGGA 58.859 43.478 0.00 0.00 36.57 3.86
1723 1747 4.141287 TCACCATCCAAGTTAAACACAGG 58.859 43.478 0.00 0.00 0.00 4.00
1724 1748 5.299279 ACTTCACCATCCAAGTTAAACACAG 59.701 40.000 0.00 0.00 27.81 3.66
1725 1749 5.197451 ACTTCACCATCCAAGTTAAACACA 58.803 37.500 0.00 0.00 27.81 3.72
1726 1750 5.767816 ACTTCACCATCCAAGTTAAACAC 57.232 39.130 0.00 0.00 27.81 3.32
1727 1751 6.126409 AGAACTTCACCATCCAAGTTAAACA 58.874 36.000 0.00 0.00 41.83 2.83
1728 1752 6.635030 AGAACTTCACCATCCAAGTTAAAC 57.365 37.500 0.00 0.00 41.83 2.01
1729 1753 6.040391 CCAAGAACTTCACCATCCAAGTTAAA 59.960 38.462 0.00 0.00 41.83 1.52
1730 1754 5.534654 CCAAGAACTTCACCATCCAAGTTAA 59.465 40.000 0.00 0.00 41.83 2.01
1731 1755 5.070001 CCAAGAACTTCACCATCCAAGTTA 58.930 41.667 0.00 0.00 41.83 2.24
1732 1756 3.891366 CCAAGAACTTCACCATCCAAGTT 59.109 43.478 0.00 0.00 43.94 2.66
1733 1757 3.490348 CCAAGAACTTCACCATCCAAGT 58.510 45.455 0.00 0.00 34.16 3.16
1734 1758 2.229784 GCCAAGAACTTCACCATCCAAG 59.770 50.000 0.00 0.00 0.00 3.61
1735 1759 2.238521 GCCAAGAACTTCACCATCCAA 58.761 47.619 0.00 0.00 0.00 3.53
1736 1760 1.144708 TGCCAAGAACTTCACCATCCA 59.855 47.619 0.00 0.00 0.00 3.41
1737 1761 1.909700 TGCCAAGAACTTCACCATCC 58.090 50.000 0.00 0.00 0.00 3.51
1738 1762 3.084039 TCATGCCAAGAACTTCACCATC 58.916 45.455 0.00 0.00 0.00 3.51
1739 1763 3.159213 TCATGCCAAGAACTTCACCAT 57.841 42.857 0.00 0.00 0.00 3.55
1740 1764 2.655090 TCATGCCAAGAACTTCACCA 57.345 45.000 0.00 0.00 0.00 4.17
1741 1765 3.507233 TCAATCATGCCAAGAACTTCACC 59.493 43.478 0.00 0.00 0.00 4.02
1742 1766 4.771590 TCAATCATGCCAAGAACTTCAC 57.228 40.909 0.00 0.00 0.00 3.18
1743 1767 5.336929 CCAATCAATCATGCCAAGAACTTCA 60.337 40.000 0.00 0.00 0.00 3.02
1744 1768 5.107133 CCAATCAATCATGCCAAGAACTTC 58.893 41.667 0.00 0.00 0.00 3.01
1745 1769 4.529377 ACCAATCAATCATGCCAAGAACTT 59.471 37.500 0.00 0.00 0.00 2.66
1746 1770 4.091549 ACCAATCAATCATGCCAAGAACT 58.908 39.130 0.00 0.00 0.00 3.01
1747 1771 4.460948 ACCAATCAATCATGCCAAGAAC 57.539 40.909 0.00 0.00 0.00 3.01
1748 1772 5.486735 AAACCAATCAATCATGCCAAGAA 57.513 34.783 0.00 0.00 0.00 2.52
1749 1773 5.394443 GCTAAACCAATCAATCATGCCAAGA 60.394 40.000 0.00 0.00 0.00 3.02
1750 1774 4.807304 GCTAAACCAATCAATCATGCCAAG 59.193 41.667 0.00 0.00 0.00 3.61
1751 1775 4.382901 GGCTAAACCAATCAATCATGCCAA 60.383 41.667 0.00 0.00 38.86 4.52
1752 1776 3.132646 GGCTAAACCAATCAATCATGCCA 59.867 43.478 0.00 0.00 38.86 4.92
1753 1777 3.721035 GGCTAAACCAATCAATCATGCC 58.279 45.455 0.00 0.00 38.86 4.40
1754 1778 3.066621 TCGGCTAAACCAATCAATCATGC 59.933 43.478 0.00 0.00 39.03 4.06
1755 1779 4.898829 TCGGCTAAACCAATCAATCATG 57.101 40.909 0.00 0.00 39.03 3.07
1756 1780 5.132502 TGATCGGCTAAACCAATCAATCAT 58.867 37.500 0.00 0.00 39.03 2.45
1757 1781 4.522114 TGATCGGCTAAACCAATCAATCA 58.478 39.130 0.00 0.00 39.03 2.57
1758 1782 5.695851 ATGATCGGCTAAACCAATCAATC 57.304 39.130 0.00 0.00 39.03 2.67
1759 1783 6.942005 TCATATGATCGGCTAAACCAATCAAT 59.058 34.615 0.00 0.00 39.03 2.57
1760 1784 6.295249 TCATATGATCGGCTAAACCAATCAA 58.705 36.000 0.00 0.00 39.03 2.57
1761 1785 5.863965 TCATATGATCGGCTAAACCAATCA 58.136 37.500 0.00 0.00 39.03 2.57
1762 1786 6.992063 ATCATATGATCGGCTAAACCAATC 57.008 37.500 12.62 0.00 39.03 2.67
1763 1787 6.992063 GATCATATGATCGGCTAAACCAAT 57.008 37.500 25.85 0.00 41.15 3.16
1781 1805 9.667107 ATGATTTTCTTGCAAATTTCAGATCAT 57.333 25.926 0.00 6.95 0.00 2.45
1782 1806 9.146984 GATGATTTTCTTGCAAATTTCAGATCA 57.853 29.630 0.00 4.99 0.00 2.92
1783 1807 9.367444 AGATGATTTTCTTGCAAATTTCAGATC 57.633 29.630 0.00 0.00 0.00 2.75
1784 1808 9.151471 CAGATGATTTTCTTGCAAATTTCAGAT 57.849 29.630 0.00 0.00 0.00 2.90
1785 1809 8.361889 TCAGATGATTTTCTTGCAAATTTCAGA 58.638 29.630 0.00 0.00 0.00 3.27
1786 1810 8.528917 TCAGATGATTTTCTTGCAAATTTCAG 57.471 30.769 0.00 0.00 0.00 3.02
1787 1811 8.145767 ACTCAGATGATTTTCTTGCAAATTTCA 58.854 29.630 0.00 0.30 0.00 2.69
1788 1812 8.530269 ACTCAGATGATTTTCTTGCAAATTTC 57.470 30.769 0.00 0.00 0.00 2.17
1789 1813 8.897872 AACTCAGATGATTTTCTTGCAAATTT 57.102 26.923 0.00 0.00 0.00 1.82
1790 1814 8.897872 AAACTCAGATGATTTTCTTGCAAATT 57.102 26.923 0.00 0.00 0.00 1.82
1791 1815 7.327761 CGAAACTCAGATGATTTTCTTGCAAAT 59.672 33.333 17.99 0.00 39.84 2.32
1792 1816 6.638063 CGAAACTCAGATGATTTTCTTGCAAA 59.362 34.615 17.99 0.00 39.84 3.68
1793 1817 6.144854 CGAAACTCAGATGATTTTCTTGCAA 58.855 36.000 17.99 0.00 39.84 4.08
1794 1818 5.239306 ACGAAACTCAGATGATTTTCTTGCA 59.761 36.000 17.99 0.00 39.84 4.08
1795 1819 5.566774 CACGAAACTCAGATGATTTTCTTGC 59.433 40.000 17.99 0.47 39.84 4.01
1796 1820 6.891624 TCACGAAACTCAGATGATTTTCTTG 58.108 36.000 18.21 18.21 40.72 3.02
1797 1821 7.388776 TCATCACGAAACTCAGATGATTTTCTT 59.611 33.333 17.99 10.03 41.21 2.52
1798 1822 6.875726 TCATCACGAAACTCAGATGATTTTCT 59.124 34.615 17.99 7.48 41.21 2.52
1799 1823 7.065216 TCATCACGAAACTCAGATGATTTTC 57.935 36.000 12.98 12.98 41.21 2.29
1800 1824 7.173907 AGTTCATCACGAAACTCAGATGATTTT 59.826 33.333 0.00 0.00 44.30 1.82
1801 1825 6.652481 AGTTCATCACGAAACTCAGATGATTT 59.348 34.615 0.00 0.00 44.30 2.17
1802 1826 6.169094 AGTTCATCACGAAACTCAGATGATT 58.831 36.000 0.00 0.00 44.30 2.57
1803 1827 5.728471 AGTTCATCACGAAACTCAGATGAT 58.272 37.500 0.00 0.00 44.30 2.45
1804 1828 5.139435 AGTTCATCACGAAACTCAGATGA 57.861 39.130 0.00 0.00 43.53 2.92
1805 1829 5.852738 AAGTTCATCACGAAACTCAGATG 57.147 39.130 0.00 0.00 39.29 2.90
1806 1830 9.653287 TTATTAAGTTCATCACGAAACTCAGAT 57.347 29.630 0.00 0.00 34.69 2.90
1807 1831 9.483916 TTTATTAAGTTCATCACGAAACTCAGA 57.516 29.630 0.00 0.00 34.69 3.27
1808 1832 9.530129 GTTTATTAAGTTCATCACGAAACTCAG 57.470 33.333 0.00 0.00 34.69 3.35
1809 1833 8.500773 GGTTTATTAAGTTCATCACGAAACTCA 58.499 33.333 0.00 0.00 34.69 3.41
1810 1834 8.500773 TGGTTTATTAAGTTCATCACGAAACTC 58.499 33.333 0.00 0.00 34.69 3.01
1811 1835 8.385898 TGGTTTATTAAGTTCATCACGAAACT 57.614 30.769 0.00 0.00 34.69 2.66
1812 1836 7.749126 CCTGGTTTATTAAGTTCATCACGAAAC 59.251 37.037 0.00 0.00 34.69 2.78
1813 1837 7.662258 TCCTGGTTTATTAAGTTCATCACGAAA 59.338 33.333 0.00 0.00 34.69 3.46
1814 1838 7.118680 GTCCTGGTTTATTAAGTTCATCACGAA 59.881 37.037 0.00 0.00 0.00 3.85
1815 1839 6.592607 GTCCTGGTTTATTAAGTTCATCACGA 59.407 38.462 0.00 0.00 0.00 4.35
1816 1840 6.455113 CGTCCTGGTTTATTAAGTTCATCACG 60.455 42.308 0.00 0.00 0.00 4.35
1817 1841 6.370718 ACGTCCTGGTTTATTAAGTTCATCAC 59.629 38.462 0.00 0.00 0.00 3.06
1818 1842 6.370442 CACGTCCTGGTTTATTAAGTTCATCA 59.630 38.462 0.00 0.00 0.00 3.07
1819 1843 6.370718 ACACGTCCTGGTTTATTAAGTTCATC 59.629 38.462 0.00 0.00 0.00 2.92
1820 1844 6.148811 CACACGTCCTGGTTTATTAAGTTCAT 59.851 38.462 0.00 0.00 0.00 2.57
1821 1845 5.467399 CACACGTCCTGGTTTATTAAGTTCA 59.533 40.000 0.00 0.00 0.00 3.18
1822 1846 5.697633 TCACACGTCCTGGTTTATTAAGTTC 59.302 40.000 0.00 0.00 0.00 3.01
1823 1847 5.613329 TCACACGTCCTGGTTTATTAAGTT 58.387 37.500 0.00 0.00 0.00 2.66
1824 1848 5.217978 TCACACGTCCTGGTTTATTAAGT 57.782 39.130 0.00 0.00 0.00 2.24
1825 1849 5.699458 AGTTCACACGTCCTGGTTTATTAAG 59.301 40.000 0.00 0.00 0.00 1.85
1826 1850 5.467399 CAGTTCACACGTCCTGGTTTATTAA 59.533 40.000 0.00 0.00 0.00 1.40
1827 1851 4.992319 CAGTTCACACGTCCTGGTTTATTA 59.008 41.667 0.00 0.00 0.00 0.98
1828 1852 3.813166 CAGTTCACACGTCCTGGTTTATT 59.187 43.478 0.00 0.00 0.00 1.40
1829 1853 3.399330 CAGTTCACACGTCCTGGTTTAT 58.601 45.455 0.00 0.00 0.00 1.40
1830 1854 2.484065 CCAGTTCACACGTCCTGGTTTA 60.484 50.000 0.00 0.00 39.70 2.01
1831 1855 1.663695 CAGTTCACACGTCCTGGTTT 58.336 50.000 0.00 0.00 0.00 3.27
1832 1856 0.179056 CCAGTTCACACGTCCTGGTT 60.179 55.000 0.00 0.00 39.70 3.67
1833 1857 1.445942 CCAGTTCACACGTCCTGGT 59.554 57.895 0.00 0.00 39.70 4.00
1834 1858 1.961277 GCCAGTTCACACGTCCTGG 60.961 63.158 9.30 9.30 45.87 4.45
1835 1859 1.224069 CTGCCAGTTCACACGTCCTG 61.224 60.000 0.00 0.00 0.00 3.86
1836 1860 1.069765 CTGCCAGTTCACACGTCCT 59.930 57.895 0.00 0.00 0.00 3.85
1837 1861 1.961277 CCTGCCAGTTCACACGTCC 60.961 63.158 0.00 0.00 0.00 4.79
1838 1862 0.032952 TACCTGCCAGTTCACACGTC 59.967 55.000 0.00 0.00 0.00 4.34
1839 1863 0.466543 TTACCTGCCAGTTCACACGT 59.533 50.000 0.00 0.00 0.00 4.49
1840 1864 0.865769 GTTACCTGCCAGTTCACACG 59.134 55.000 0.00 0.00 0.00 4.49
1841 1865 1.602377 GTGTTACCTGCCAGTTCACAC 59.398 52.381 0.00 0.00 0.00 3.82
1842 1866 1.476110 GGTGTTACCTGCCAGTTCACA 60.476 52.381 0.00 0.00 34.73 3.58
1843 1867 1.235724 GGTGTTACCTGCCAGTTCAC 58.764 55.000 0.00 0.00 34.73 3.18
1844 1868 0.109723 GGGTGTTACCTGCCAGTTCA 59.890 55.000 0.00 0.00 38.64 3.18
1845 1869 0.400594 AGGGTGTTACCTGCCAGTTC 59.599 55.000 0.00 0.00 40.04 3.01
1846 1870 1.737199 TAGGGTGTTACCTGCCAGTT 58.263 50.000 0.00 0.00 42.02 3.16
1847 1871 1.966845 ATAGGGTGTTACCTGCCAGT 58.033 50.000 0.00 0.00 42.02 4.00
1848 1872 4.497291 TTTATAGGGTGTTACCTGCCAG 57.503 45.455 0.00 0.00 42.02 4.85
1849 1873 4.290196 AGTTTTATAGGGTGTTACCTGCCA 59.710 41.667 0.00 0.00 42.02 4.92
1850 1874 4.851843 AGTTTTATAGGGTGTTACCTGCC 58.148 43.478 0.00 0.00 42.02 4.85
1851 1875 9.788889 ATAATAGTTTTATAGGGTGTTACCTGC 57.211 33.333 0.00 0.00 42.02 4.85
2016 2040 8.726988 TCTTACAACTATTGAAGTTTGCCATAC 58.273 33.333 0.00 0.00 46.61 2.39
2189 2213 5.873732 GCATCTGCAAAGGAAGTTAGTTAG 58.126 41.667 0.00 0.00 41.59 2.34
2263 2288 4.777896 TGGGAGACTAGTAGCAAATTCTGT 59.222 41.667 0.00 0.00 0.00 3.41
2393 2418 5.589855 AGAACATCACAAACAACACATGAGA 59.410 36.000 0.00 0.00 0.00 3.27
2431 2456 3.445096 CAGGAACCCAGCTTCTTATTTGG 59.555 47.826 0.00 0.00 0.00 3.28
2436 2461 0.328258 GCCAGGAACCCAGCTTCTTA 59.672 55.000 0.00 0.00 0.00 2.10
2557 2582 5.163195 ACCAACCAGTCACTCAAAGATAACT 60.163 40.000 0.00 0.00 0.00 2.24
2579 2604 4.263018 AGTTAACAAACTAGGACGGACC 57.737 45.455 8.61 0.00 39.35 4.46
2581 2606 5.051816 CACAAGTTAACAAACTAGGACGGA 58.948 41.667 8.61 0.00 31.72 4.69
2622 2649 3.623060 CCAGGACATGACCTAAATCAACG 59.377 47.826 16.55 2.00 38.32 4.10
2693 2721 6.670027 AGGAGTTGATAAACTAGGACATGACT 59.330 38.462 0.00 0.00 32.22 3.41
2774 2802 0.890996 GGTTCAACACCCAGCAGAGG 60.891 60.000 0.00 0.00 40.19 3.69
2784 2812 5.507315 CCAACCAACTATCAAGGTTCAACAC 60.507 44.000 0.00 0.00 43.43 3.32
2800 2836 1.699730 AGGCACCTAAACCAACCAAC 58.300 50.000 0.00 0.00 0.00 3.77
2819 2855 7.449086 CACAACAAGGGGTTAATAAACTAGGAA 59.551 37.037 0.00 0.00 37.72 3.36
2841 2877 6.634805 ACAATTATGGTTGTTCAACACACAA 58.365 32.000 15.89 8.49 39.15 3.33
2852 2888 9.423061 GCAGAGAAAATAAACAATTATGGTTGT 57.577 29.630 0.00 0.00 43.78 3.32
2853 2889 8.872845 GGCAGAGAAAATAAACAATTATGGTTG 58.127 33.333 0.00 0.00 37.00 3.77
2885 2921 7.528881 GCCTCACTCCAGCCCTTTATAATATTA 60.529 40.741 0.00 0.00 0.00 0.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.