Multiple sequence alignment - TraesCS7B01G330900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G330900 chr7B 100.000 4149 0 0 1 4149 586266811 586262663 0.000000e+00 7662.0
1 TraesCS7B01G330900 chr7B 94.904 2237 80 19 767 2992 586659371 586661584 0.000000e+00 3469.0
2 TraesCS7B01G330900 chr7B 91.519 507 42 1 2489 2994 586668643 586669149 0.000000e+00 697.0
3 TraesCS7B01G330900 chr7B 89.252 428 16 9 3722 4149 34424723 34425120 3.700000e-140 508.0
4 TraesCS7B01G330900 chr7B 81.439 431 48 15 4 433 586664955 586664556 1.440000e-84 324.0
5 TraesCS7B01G330900 chr7B 87.736 212 20 4 3747 3958 374423976 374424181 4.140000e-60 243.0
6 TraesCS7B01G330900 chr7B 81.470 313 30 8 145 433 586691668 586691360 8.970000e-57 231.0
7 TraesCS7B01G330900 chr7B 95.876 97 4 0 3650 3746 374422925 374423021 1.540000e-34 158.0
8 TraesCS7B01G330900 chr7A 91.327 2940 161 36 648 3559 624967466 624964593 0.000000e+00 3930.0
9 TraesCS7B01G330900 chr7A 91.466 457 34 4 1 456 624982513 624982061 1.270000e-174 623.0
10 TraesCS7B01G330900 chr7A 94.979 239 12 0 471 709 624980230 624979992 3.920000e-100 375.0
11 TraesCS7B01G330900 chr7D 92.332 2530 117 38 648 3160 543601905 543604374 0.000000e+00 3526.0
12 TraesCS7B01G330900 chr7D 93.494 2198 100 15 779 2963 543059864 543057697 0.000000e+00 3227.0
13 TraesCS7B01G330900 chr7D 93.202 456 28 2 1 456 543062253 543061801 0.000000e+00 667.0
14 TraesCS7B01G330900 chr7D 90.876 274 25 0 474 747 543060134 543059861 6.550000e-98 368.0
15 TraesCS7B01G330900 chr7D 82.178 404 39 11 2958 3338 543056981 543056588 2.410000e-82 316.0
16 TraesCS7B01G330900 chr5D 90.429 2236 169 30 822 3042 400297457 400295252 0.000000e+00 2902.0
17 TraesCS7B01G330900 chr5D 88.517 209 22 2 3747 3953 127881747 127881539 6.890000e-63 252.0
18 TraesCS7B01G330900 chr5A 90.075 2267 181 30 822 3070 505628246 505626006 0.000000e+00 2900.0
19 TraesCS7B01G330900 chr5A 86.667 60 6 2 3619 3678 344342659 344342716 9.630000e-07 65.8
20 TraesCS7B01G330900 chr5B 91.777 2043 148 13 1018 3059 480303689 480301666 0.000000e+00 2824.0
21 TraesCS7B01G330900 chr5B 88.660 97 9 2 3650 3745 509469857 509469762 2.620000e-22 117.0
22 TraesCS7B01G330900 chr5B 88.506 87 10 0 3650 3736 516036929 516036843 5.670000e-19 106.0
23 TraesCS7B01G330900 chr2D 82.549 1828 289 21 1139 2954 651417405 651419214 0.000000e+00 1581.0
24 TraesCS7B01G330900 chr2A 82.253 1820 290 20 1148 2954 776218355 776216556 0.000000e+00 1541.0
25 TraesCS7B01G330900 chr1B 95.669 254 11 0 3747 4000 524273205 524272952 3.860000e-110 409.0
26 TraesCS7B01G330900 chr6B 93.281 253 17 0 3747 3999 633847646 633847898 1.410000e-99 374.0
27 TraesCS7B01G330900 chr6B 89.055 201 20 2 3747 3945 683645755 683645555 8.910000e-62 248.0
28 TraesCS7B01G330900 chr6B 94.000 100 6 0 3649 3748 633846720 633846819 7.180000e-33 152.0
29 TraesCS7B01G330900 chr2B 88.995 209 21 2 3747 3953 1831639 1831431 1.480000e-64 257.0
30 TraesCS7B01G330900 chr4B 88.517 209 22 2 3747 3953 502993932 502993724 6.890000e-63 252.0
31 TraesCS7B01G330900 chr3B 88.571 210 15 4 3747 3956 770095374 770095174 3.200000e-61 246.0
32 TraesCS7B01G330900 chr3B 93.814 97 6 0 3650 3746 770096448 770096352 3.340000e-31 147.0
33 TraesCS7B01G330900 chr3B 92.857 98 7 0 3649 3746 545009204 545009301 4.320000e-30 143.0
34 TraesCS7B01G330900 chr4D 98.684 76 1 0 3673 3748 24695816 24695891 7.230000e-28 135.0
35 TraesCS7B01G330900 chr1A 89.011 91 7 2 4061 4149 581297676 581297587 4.390000e-20 110.0
36 TraesCS7B01G330900 chr4A 88.636 88 9 1 3650 3736 734873391 734873478 5.670000e-19 106.0
37 TraesCS7B01G330900 chr4A 88.636 88 9 1 3650 3736 736111686 736111773 5.670000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G330900 chr7B 586262663 586266811 4148 True 7662.0 7662 100.0000 1 4149 1 chr7B.!!$R1 4148
1 TraesCS7B01G330900 chr7B 586659371 586661584 2213 False 3469.0 3469 94.9040 767 2992 1 chr7B.!!$F2 2225
2 TraesCS7B01G330900 chr7B 586668643 586669149 506 False 697.0 697 91.5190 2489 2994 1 chr7B.!!$F3 505
3 TraesCS7B01G330900 chr7B 374422925 374424181 1256 False 200.5 243 91.8060 3650 3958 2 chr7B.!!$F4 308
4 TraesCS7B01G330900 chr7A 624964593 624967466 2873 True 3930.0 3930 91.3270 648 3559 1 chr7A.!!$R1 2911
5 TraesCS7B01G330900 chr7A 624979992 624982513 2521 True 499.0 623 93.2225 1 709 2 chr7A.!!$R2 708
6 TraesCS7B01G330900 chr7D 543601905 543604374 2469 False 3526.0 3526 92.3320 648 3160 1 chr7D.!!$F1 2512
7 TraesCS7B01G330900 chr7D 543056588 543062253 5665 True 1144.5 3227 89.9375 1 3338 4 chr7D.!!$R1 3337
8 TraesCS7B01G330900 chr5D 400295252 400297457 2205 True 2902.0 2902 90.4290 822 3042 1 chr5D.!!$R2 2220
9 TraesCS7B01G330900 chr5A 505626006 505628246 2240 True 2900.0 2900 90.0750 822 3070 1 chr5A.!!$R1 2248
10 TraesCS7B01G330900 chr5B 480301666 480303689 2023 True 2824.0 2824 91.7770 1018 3059 1 chr5B.!!$R1 2041
11 TraesCS7B01G330900 chr2D 651417405 651419214 1809 False 1581.0 1581 82.5490 1139 2954 1 chr2D.!!$F1 1815
12 TraesCS7B01G330900 chr2A 776216556 776218355 1799 True 1541.0 1541 82.2530 1148 2954 1 chr2A.!!$R1 1806
13 TraesCS7B01G330900 chr6B 633846720 633847898 1178 False 263.0 374 93.6405 3649 3999 2 chr6B.!!$F1 350

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
156 157 0.102300 GCTCTTGTTTTGTTGCCCGT 59.898 50.0 0.0 0.0 0.00 5.28 F
950 2801 0.179111 CGATTCCTCCTTACGCAGCA 60.179 55.0 0.0 0.0 0.00 4.41 F
1047 2918 0.388649 GTCAGTCGACATGGCTCGTT 60.389 55.0 19.5 0.0 42.13 3.85 F
2864 4763 0.904865 AGGTCCAAGATGCGGTGAGA 60.905 55.0 0.0 0.0 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1631 3523 1.375908 GTTGAGCCCTGCGATGACA 60.376 57.895 0.0 0.0 0.00 3.58 R
2864 4763 0.606401 CAAGCCACCCGTTCACATCT 60.606 55.000 0.0 0.0 0.00 2.90 R
2882 4781 0.745486 CCGCCTCTGCATTGTCATCA 60.745 55.000 0.0 0.0 37.32 3.07 R
3941 7582 1.002868 AGTCCCATCACTGCACAGC 60.003 57.895 0.0 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 8.607713 TGGTTTCCTTTGTATTTCCAGTATCTA 58.392 33.333 0.00 0.00 0.00 1.98
68 69 8.666821 TCCAGTATCTATAAACCTGAGCTAGTA 58.333 37.037 0.00 0.00 0.00 1.82
69 70 8.952278 CCAGTATCTATAAACCTGAGCTAGTAG 58.048 40.741 0.00 0.00 0.00 2.57
151 152 3.553508 CCTGATGGGCTCTTGTTTTGTTG 60.554 47.826 0.00 0.00 0.00 3.33
156 157 0.102300 GCTCTTGTTTTGTTGCCCGT 59.898 50.000 0.00 0.00 0.00 5.28
221 222 5.660417 AGATCTTACTCTTCTGCAGGATGAA 59.340 40.000 15.13 0.00 39.69 2.57
243 244 4.130286 GTGATGAGCACTAAGGCTACTT 57.870 45.455 0.00 0.00 45.99 2.24
253 254 5.300792 GCACTAAGGCTACTTATGAGAGAGT 59.699 44.000 0.00 0.00 38.44 3.24
263 264 2.949451 ATGAGAGAGTTGCGTCGATT 57.051 45.000 0.00 0.00 0.00 3.34
264 265 2.264109 TGAGAGAGTTGCGTCGATTC 57.736 50.000 0.00 0.00 0.00 2.52
290 291 3.572255 GTGACCATCCAGACTAGATCTCC 59.428 52.174 0.00 0.00 34.41 3.71
293 294 3.990933 ACCATCCAGACTAGATCTCCCTA 59.009 47.826 0.00 0.00 34.41 3.53
296 297 5.841237 CCATCCAGACTAGATCTCCCTAAAA 59.159 44.000 0.00 0.00 34.41 1.52
415 416 6.470235 GTGAAGAGTTGTGTTTGATTCTTGTG 59.530 38.462 0.00 0.00 0.00 3.33
456 457 5.925506 AGAATTGTGGCATGATGATTTGA 57.074 34.783 0.00 0.00 0.00 2.69
458 459 6.338146 AGAATTGTGGCATGATGATTTGAAG 58.662 36.000 0.00 0.00 0.00 3.02
459 460 5.925506 ATTGTGGCATGATGATTTGAAGA 57.074 34.783 0.00 0.00 0.00 2.87
460 461 5.725325 TTGTGGCATGATGATTTGAAGAA 57.275 34.783 0.00 0.00 0.00 2.52
461 462 5.925506 TGTGGCATGATGATTTGAAGAAT 57.074 34.783 0.00 0.00 0.00 2.40
462 463 6.288941 TGTGGCATGATGATTTGAAGAATT 57.711 33.333 0.00 0.00 0.00 2.17
463 464 6.103330 TGTGGCATGATGATTTGAAGAATTG 58.897 36.000 0.00 0.00 0.00 2.32
464 465 5.006358 GTGGCATGATGATTTGAAGAATTGC 59.994 40.000 0.00 0.00 0.00 3.56
465 466 4.208460 GGCATGATGATTTGAAGAATTGCG 59.792 41.667 0.00 0.00 0.00 4.85
468 469 3.193056 TGATGATTTGAAGAATTGCGGCA 59.807 39.130 0.00 0.00 0.00 5.69
469 470 3.220507 TGATTTGAAGAATTGCGGCAG 57.779 42.857 1.67 0.00 0.00 4.85
578 2400 3.130160 AGGGACGAGGCGACGTAC 61.130 66.667 12.56 12.56 46.52 3.67
604 2426 4.830765 CCGATCCGCCGGCTGAAA 62.831 66.667 24.89 7.02 43.25 2.69
666 2488 2.749621 CGTAAAAAGCTTCCATGAGGCT 59.250 45.455 0.00 0.00 46.74 4.58
742 2565 5.332055 CGAAAACTAAACACATCGACGTTCT 60.332 40.000 0.00 0.00 32.38 3.01
746 2569 6.866179 ACTAAACACATCGACGTTCTTATC 57.134 37.500 0.00 0.00 0.00 1.75
756 2579 3.303495 CGACGTTCTTATCGTTGCTCAAT 59.697 43.478 0.00 0.00 41.64 2.57
757 2580 4.201589 CGACGTTCTTATCGTTGCTCAATT 60.202 41.667 0.00 0.00 41.64 2.32
758 2581 5.607119 ACGTTCTTATCGTTGCTCAATTT 57.393 34.783 0.00 0.00 38.38 1.82
759 2582 5.997385 ACGTTCTTATCGTTGCTCAATTTT 58.003 33.333 0.00 0.00 38.38 1.82
760 2583 6.435428 ACGTTCTTATCGTTGCTCAATTTTT 58.565 32.000 0.00 0.00 38.38 1.94
908 2741 2.030701 GTGACGCGTCCAAGTTTAAACA 59.969 45.455 34.34 10.75 0.00 2.83
939 2790 2.110006 GCCTCAGGCCGATTCCTC 59.890 66.667 3.37 0.00 44.06 3.71
940 2791 2.825264 CCTCAGGCCGATTCCTCC 59.175 66.667 0.00 0.00 33.25 4.30
941 2792 1.764054 CCTCAGGCCGATTCCTCCT 60.764 63.158 0.00 0.00 33.25 3.69
942 2793 1.341156 CCTCAGGCCGATTCCTCCTT 61.341 60.000 0.00 0.00 33.25 3.36
943 2794 1.414158 CTCAGGCCGATTCCTCCTTA 58.586 55.000 0.00 0.00 33.25 2.69
944 2795 1.069358 CTCAGGCCGATTCCTCCTTAC 59.931 57.143 0.00 0.00 33.25 2.34
945 2796 0.249489 CAGGCCGATTCCTCCTTACG 60.249 60.000 0.00 0.00 33.25 3.18
946 2797 1.594564 GGCCGATTCCTCCTTACGC 60.595 63.158 0.00 0.00 0.00 4.42
947 2798 1.143183 GCCGATTCCTCCTTACGCA 59.857 57.895 0.00 0.00 0.00 5.24
948 2799 0.876342 GCCGATTCCTCCTTACGCAG 60.876 60.000 0.00 0.00 0.00 5.18
949 2800 0.876342 CCGATTCCTCCTTACGCAGC 60.876 60.000 0.00 0.00 0.00 5.25
950 2801 0.179111 CGATTCCTCCTTACGCAGCA 60.179 55.000 0.00 0.00 0.00 4.41
951 2802 1.291132 GATTCCTCCTTACGCAGCAC 58.709 55.000 0.00 0.00 0.00 4.40
994 2861 1.751927 TACGACGGCCTCCTCTTCC 60.752 63.158 0.00 0.00 0.00 3.46
995 2862 2.207501 TACGACGGCCTCCTCTTCCT 62.208 60.000 0.00 0.00 0.00 3.36
996 2863 2.776913 CGACGGCCTCCTCTTCCTC 61.777 68.421 0.00 0.00 0.00 3.71
999 2866 2.131067 CGGCCTCCTCTTCCTCTCC 61.131 68.421 0.00 0.00 0.00 3.71
1000 2867 1.002274 GGCCTCCTCTTCCTCTCCA 59.998 63.158 0.00 0.00 0.00 3.86
1006 2873 3.308046 CCTCCTCTTCCTCTCCAAAAAGG 60.308 52.174 0.00 0.00 39.47 3.11
1047 2918 0.388649 GTCAGTCGACATGGCTCGTT 60.389 55.000 19.50 0.00 42.13 3.85
1059 2945 4.731503 CTCGTTCCGCGTCGACGT 62.732 66.667 35.48 0.00 42.22 4.34
1111 3003 3.723235 TTCTCGCGATCCCAGCTGC 62.723 63.158 10.36 0.00 0.00 5.25
1112 3004 4.218578 CTCGCGATCCCAGCTGCT 62.219 66.667 10.36 0.00 0.00 4.24
1113 3005 4.519437 TCGCGATCCCAGCTGCTG 62.519 66.667 22.44 22.44 0.00 4.41
1631 3523 4.643387 GCCACCAAGGACGCAGGT 62.643 66.667 0.00 0.00 41.22 4.00
1640 3532 2.432456 GACGCAGGTGTCATCGCA 60.432 61.111 8.04 0.00 38.75 5.10
1811 3709 2.990479 GAGGTCCTCGCCACCAAT 59.010 61.111 2.28 0.00 36.23 3.16
1903 3801 4.856801 GCACGGCCGGGACATCAT 62.857 66.667 36.21 2.15 0.00 2.45
2345 4243 3.542742 GTCGCGCCGCTTACACTC 61.543 66.667 7.78 0.00 0.00 3.51
2498 4396 1.767681 GAGAGGAGCATGACCAAGGAT 59.232 52.381 0.00 0.00 0.00 3.24
2864 4763 0.904865 AGGTCCAAGATGCGGTGAGA 60.905 55.000 0.00 0.00 0.00 3.27
2867 4766 1.137872 GTCCAAGATGCGGTGAGAGAT 59.862 52.381 0.00 0.00 0.00 2.75
2875 4774 1.078759 GCGGTGAGAGATGTGAACGG 61.079 60.000 0.00 0.00 0.00 4.44
2882 4781 0.321653 GAGATGTGAACGGGTGGCTT 60.322 55.000 0.00 0.00 0.00 4.35
3280 5929 0.106149 GGGTGTTGTATCCTAGCCCG 59.894 60.000 0.00 0.00 0.00 6.13
3287 5936 0.977395 GTATCCTAGCCCGCCATCTT 59.023 55.000 0.00 0.00 0.00 2.40
3296 5945 4.098914 AGCCCGCCATCTTATATCAAAA 57.901 40.909 0.00 0.00 0.00 2.44
3297 5946 4.666512 AGCCCGCCATCTTATATCAAAAT 58.333 39.130 0.00 0.00 0.00 1.82
3322 5971 5.957842 GGTTTGATACCTGTGTTTCATGA 57.042 39.130 0.00 0.00 44.10 3.07
3323 5972 6.515272 GGTTTGATACCTGTGTTTCATGAT 57.485 37.500 0.00 0.00 44.10 2.45
3324 5973 7.624360 GGTTTGATACCTGTGTTTCATGATA 57.376 36.000 0.00 0.00 44.10 2.15
3332 5981 5.056480 CCTGTGTTTCATGATAGCGGATTA 58.944 41.667 0.00 0.00 0.00 1.75
3341 5990 8.853077 TTCATGATAGCGGATTATTCTTTCAT 57.147 30.769 0.00 0.00 31.73 2.57
3344 5993 7.439157 TGATAGCGGATTATTCTTTCATTGG 57.561 36.000 0.00 0.00 0.00 3.16
3353 6002 2.806945 TCTTTCATTGGGAGGCGATT 57.193 45.000 0.00 0.00 0.00 3.34
3354 6003 3.085952 TCTTTCATTGGGAGGCGATTT 57.914 42.857 0.00 0.00 0.00 2.17
3358 6007 2.091541 TCATTGGGAGGCGATTTGTTC 58.908 47.619 0.00 0.00 0.00 3.18
3359 6008 2.094675 CATTGGGAGGCGATTTGTTCT 58.905 47.619 0.00 0.00 0.00 3.01
3369 6018 5.880341 AGGCGATTTGTTCTTGTTAATAGC 58.120 37.500 0.00 0.00 0.00 2.97
3370 6019 5.414454 AGGCGATTTGTTCTTGTTAATAGCA 59.586 36.000 0.00 0.00 32.50 3.49
3392 6041 8.396272 AGCAAGATGTTTATAGTGACTTTGTT 57.604 30.769 0.00 0.00 0.00 2.83
3394 6043 9.760660 GCAAGATGTTTATAGTGACTTTGTTAG 57.239 33.333 0.00 0.00 0.00 2.34
3405 6054 6.465084 AGTGACTTTGTTAGTATCAAGACCC 58.535 40.000 0.00 0.00 37.17 4.46
3407 6056 4.251268 ACTTTGTTAGTATCAAGACCCGC 58.749 43.478 0.00 0.00 34.56 6.13
3409 6058 3.965379 TGTTAGTATCAAGACCCGCAA 57.035 42.857 0.00 0.00 0.00 4.85
3415 6064 0.392193 ATCAAGACCCGCAAGCTCAG 60.392 55.000 0.00 0.00 0.00 3.35
3416 6065 2.359230 AAGACCCGCAAGCTCAGC 60.359 61.111 0.00 0.00 0.00 4.26
3425 6074 1.083242 GCAAGCTCAGCCTCTCGAAG 61.083 60.000 0.00 0.00 0.00 3.79
3433 6082 2.961741 TCAGCCTCTCGAAGATGCTTAT 59.038 45.455 10.35 0.00 42.32 1.73
3434 6083 4.145052 TCAGCCTCTCGAAGATGCTTATA 58.855 43.478 10.35 1.04 42.32 0.98
3435 6084 4.217334 TCAGCCTCTCGAAGATGCTTATAG 59.783 45.833 10.35 3.15 42.32 1.31
3437 6086 4.022416 AGCCTCTCGAAGATGCTTATAGTG 60.022 45.833 8.19 0.00 42.32 2.74
3438 6087 4.022762 GCCTCTCGAAGATGCTTATAGTGA 60.023 45.833 0.00 0.00 33.80 3.41
3439 6088 5.336372 GCCTCTCGAAGATGCTTATAGTGAT 60.336 44.000 0.00 0.00 33.80 3.06
3440 6089 6.127869 GCCTCTCGAAGATGCTTATAGTGATA 60.128 42.308 0.00 0.00 33.80 2.15
3441 6090 7.471721 CCTCTCGAAGATGCTTATAGTGATAG 58.528 42.308 0.00 0.00 33.89 2.08
3445 6094 9.715123 CTCGAAGATGCTTATAGTGATAGTATG 57.285 37.037 0.00 0.00 33.89 2.39
3464 6113 1.086696 GTACGTGCATGCCTTCACAT 58.913 50.000 16.68 0.00 33.03 3.21
3466 6115 1.138036 CGTGCATGCCTTCACATGG 59.862 57.895 16.68 0.00 46.14 3.66
3473 6122 2.118313 TGCCTTCACATGGATGAGTG 57.882 50.000 0.00 0.00 37.10 3.51
3479 6128 5.684813 GCCTTCACATGGATGAGTGTATGTA 60.685 44.000 0.00 0.00 37.07 2.29
3481 6130 6.823182 CCTTCACATGGATGAGTGTATGTAAA 59.177 38.462 0.00 0.00 37.07 2.01
3484 6133 7.337938 TCACATGGATGAGTGTATGTAAACAT 58.662 34.615 0.00 0.63 37.07 2.71
3486 6135 7.496920 CACATGGATGAGTGTATGTAAACATCT 59.503 37.037 0.00 0.00 37.76 2.90
3489 6138 8.073467 TGGATGAGTGTATGTAAACATCTGTA 57.927 34.615 0.00 0.00 37.76 2.74
3490 6139 8.197439 TGGATGAGTGTATGTAAACATCTGTAG 58.803 37.037 0.00 0.00 37.76 2.74
3541 6195 3.836365 TCTTGATGTTATGGCCGATGA 57.164 42.857 0.00 0.00 0.00 2.92
3559 6213 1.204704 TGATGTTCTCCTAGCACCACG 59.795 52.381 0.00 0.00 0.00 4.94
3560 6214 1.476891 GATGTTCTCCTAGCACCACGA 59.523 52.381 0.00 0.00 0.00 4.35
3561 6215 0.601558 TGTTCTCCTAGCACCACGAC 59.398 55.000 0.00 0.00 0.00 4.34
3562 6216 0.601558 GTTCTCCTAGCACCACGACA 59.398 55.000 0.00 0.00 0.00 4.35
3563 6217 0.601558 TTCTCCTAGCACCACGACAC 59.398 55.000 0.00 0.00 0.00 3.67
3564 6218 0.538746 TCTCCTAGCACCACGACACA 60.539 55.000 0.00 0.00 0.00 3.72
3565 6219 0.317160 CTCCTAGCACCACGACACAA 59.683 55.000 0.00 0.00 0.00 3.33
3566 6220 0.317160 TCCTAGCACCACGACACAAG 59.683 55.000 0.00 0.00 0.00 3.16
3567 6221 0.033504 CCTAGCACCACGACACAAGT 59.966 55.000 0.00 0.00 0.00 3.16
3568 6222 1.271379 CCTAGCACCACGACACAAGTA 59.729 52.381 0.00 0.00 0.00 2.24
3569 6223 2.596452 CTAGCACCACGACACAAGTAG 58.404 52.381 0.00 0.00 0.00 2.57
3570 6224 0.033504 AGCACCACGACACAAGTAGG 59.966 55.000 0.00 0.00 0.00 3.18
3571 6225 1.566018 GCACCACGACACAAGTAGGC 61.566 60.000 0.00 0.00 0.00 3.93
3572 6226 1.006571 ACCACGACACAAGTAGGCG 60.007 57.895 0.00 0.00 0.00 5.52
3573 6227 1.006571 CCACGACACAAGTAGGCGT 60.007 57.895 0.00 0.00 35.33 5.68
3574 6228 0.599204 CCACGACACAAGTAGGCGTT 60.599 55.000 0.00 0.00 32.27 4.84
3575 6229 1.214367 CACGACACAAGTAGGCGTTT 58.786 50.000 0.00 0.00 32.27 3.60
3576 6230 1.191647 CACGACACAAGTAGGCGTTTC 59.808 52.381 0.00 0.00 32.27 2.78
3577 6231 1.202440 ACGACACAAGTAGGCGTTTCA 60.202 47.619 0.00 0.00 0.00 2.69
3578 6232 1.455786 CGACACAAGTAGGCGTTTCAG 59.544 52.381 0.00 0.00 0.00 3.02
3579 6233 1.194772 GACACAAGTAGGCGTTTCAGC 59.805 52.381 0.00 0.00 0.00 4.26
3587 6241 3.050275 GCGTTTCAGCCGCCTCTT 61.050 61.111 0.00 0.00 45.20 2.85
3588 6242 2.617274 GCGTTTCAGCCGCCTCTTT 61.617 57.895 0.00 0.00 45.20 2.52
3589 6243 1.949257 CGTTTCAGCCGCCTCTTTT 59.051 52.632 0.00 0.00 0.00 2.27
3590 6244 0.310854 CGTTTCAGCCGCCTCTTTTT 59.689 50.000 0.00 0.00 0.00 1.94
3618 6272 7.445900 GCATATGTAATGCACATCATATTGC 57.554 36.000 4.29 14.66 44.99 3.56
3619 6273 6.474427 GCATATGTAATGCACATCATATTGCC 59.526 38.462 4.29 5.56 44.99 4.52
3620 6274 7.540299 CATATGTAATGCACATCATATTGCCA 58.460 34.615 13.22 0.00 44.99 4.92
3621 6275 6.599356 ATGTAATGCACATCATATTGCCAT 57.401 33.333 0.00 0.00 44.99 4.40
3622 6276 5.774630 TGTAATGCACATCATATTGCCATG 58.225 37.500 0.00 0.00 38.00 3.66
3623 6277 3.953712 ATGCACATCATATTGCCATGG 57.046 42.857 7.63 7.63 38.00 3.66
3624 6278 1.964933 TGCACATCATATTGCCATGGG 59.035 47.619 15.13 0.00 38.00 4.00
3625 6279 1.965643 GCACATCATATTGCCATGGGT 59.034 47.619 15.13 0.00 32.21 4.51
3626 6280 2.366266 GCACATCATATTGCCATGGGTT 59.634 45.455 15.13 0.00 32.21 4.11
3627 6281 3.553508 GCACATCATATTGCCATGGGTTC 60.554 47.826 15.13 0.00 32.21 3.62
3628 6282 3.893200 CACATCATATTGCCATGGGTTCT 59.107 43.478 15.13 0.00 0.00 3.01
3629 6283 4.342951 CACATCATATTGCCATGGGTTCTT 59.657 41.667 15.13 0.00 0.00 2.52
3630 6284 4.342951 ACATCATATTGCCATGGGTTCTTG 59.657 41.667 15.13 0.00 0.00 3.02
3631 6285 3.979911 TCATATTGCCATGGGTTCTTGT 58.020 40.909 15.13 0.00 0.00 3.16
3632 6286 4.352009 TCATATTGCCATGGGTTCTTGTT 58.648 39.130 15.13 0.00 0.00 2.83
3633 6287 4.402155 TCATATTGCCATGGGTTCTTGTTC 59.598 41.667 15.13 0.00 0.00 3.18
3634 6288 2.079170 TTGCCATGGGTTCTTGTTCA 57.921 45.000 15.13 0.00 0.00 3.18
3635 6289 1.327303 TGCCATGGGTTCTTGTTCAC 58.673 50.000 15.13 0.00 0.00 3.18
3636 6290 1.327303 GCCATGGGTTCTTGTTCACA 58.673 50.000 15.13 0.00 0.00 3.58
3637 6291 1.000274 GCCATGGGTTCTTGTTCACAC 60.000 52.381 15.13 0.00 0.00 3.82
3638 6292 2.305928 CCATGGGTTCTTGTTCACACA 58.694 47.619 2.85 0.00 0.00 3.72
3639 6293 2.892852 CCATGGGTTCTTGTTCACACAT 59.107 45.455 2.85 0.00 37.53 3.21
3640 6294 3.321682 CCATGGGTTCTTGTTCACACATT 59.678 43.478 2.85 0.00 34.66 2.71
3641 6295 4.202243 CCATGGGTTCTTGTTCACACATTT 60.202 41.667 2.85 0.00 34.66 2.32
3642 6296 5.010516 CCATGGGTTCTTGTTCACACATTTA 59.989 40.000 2.85 0.00 34.66 1.40
3643 6297 5.766150 TGGGTTCTTGTTCACACATTTAG 57.234 39.130 0.00 0.00 31.06 1.85
3644 6298 4.037446 TGGGTTCTTGTTCACACATTTAGC 59.963 41.667 0.00 0.00 31.06 3.09
3645 6299 4.037446 GGGTTCTTGTTCACACATTTAGCA 59.963 41.667 0.00 0.00 31.06 3.49
3646 6300 5.215160 GGTTCTTGTTCACACATTTAGCAG 58.785 41.667 0.00 0.00 31.06 4.24
3647 6301 5.008613 GGTTCTTGTTCACACATTTAGCAGA 59.991 40.000 0.00 0.00 31.06 4.26
3828 7469 8.026396 ACATAGGTCTAATAACGGTAAACCAT 57.974 34.615 0.00 0.00 35.14 3.55
3832 7473 6.820152 AGGTCTAATAACGGTAAACCATGAAC 59.180 38.462 0.00 0.00 35.14 3.18
3835 7476 1.913778 AACGGTAAACCATGAACCCC 58.086 50.000 0.00 0.00 35.14 4.95
3941 7582 3.216187 TCTCGACAGATAGGAGGGAAG 57.784 52.381 0.00 0.00 0.00 3.46
3974 7615 2.936032 ACTGAACCAGGGAGCCCC 60.936 66.667 0.91 2.16 45.90 5.80
3989 7630 2.184322 CCCATCCGACCACGACAG 59.816 66.667 0.00 0.00 42.66 3.51
3991 7632 1.139734 CCATCCGACCACGACAGAG 59.860 63.158 0.00 0.00 42.66 3.35
3999 7640 1.374758 CCACGACAGAGGGCTTGAC 60.375 63.158 0.00 0.00 0.00 3.18
4000 7641 1.668294 CACGACAGAGGGCTTGACT 59.332 57.895 0.00 0.00 0.00 3.41
4001 7642 0.888619 CACGACAGAGGGCTTGACTA 59.111 55.000 0.00 0.00 0.00 2.59
4002 7643 1.272490 CACGACAGAGGGCTTGACTAA 59.728 52.381 0.00 0.00 0.00 2.24
4003 7644 2.093973 CACGACAGAGGGCTTGACTAAT 60.094 50.000 0.00 0.00 0.00 1.73
4004 7645 3.130516 CACGACAGAGGGCTTGACTAATA 59.869 47.826 0.00 0.00 0.00 0.98
4005 7646 3.961408 ACGACAGAGGGCTTGACTAATAT 59.039 43.478 0.00 0.00 0.00 1.28
4006 7647 4.406003 ACGACAGAGGGCTTGACTAATATT 59.594 41.667 0.00 0.00 0.00 1.28
4007 7648 5.597182 ACGACAGAGGGCTTGACTAATATTA 59.403 40.000 0.00 0.00 0.00 0.98
4008 7649 6.267928 ACGACAGAGGGCTTGACTAATATTAT 59.732 38.462 0.00 0.00 0.00 1.28
4009 7650 6.587990 CGACAGAGGGCTTGACTAATATTATG 59.412 42.308 0.00 0.00 0.00 1.90
4010 7651 7.523873 CGACAGAGGGCTTGACTAATATTATGA 60.524 40.741 0.00 0.00 0.00 2.15
4011 7652 8.034313 ACAGAGGGCTTGACTAATATTATGAA 57.966 34.615 0.00 0.00 0.00 2.57
4012 7653 8.494433 ACAGAGGGCTTGACTAATATTATGAAA 58.506 33.333 0.00 0.00 0.00 2.69
4013 7654 9.342308 CAGAGGGCTTGACTAATATTATGAAAA 57.658 33.333 0.00 0.00 0.00 2.29
4147 7788 9.705290 ATACTAAAATGTTGTGAAATCCCAAAC 57.295 29.630 0.00 0.00 0.00 2.93
4148 7789 7.560368 ACTAAAATGTTGTGAAATCCCAAACA 58.440 30.769 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 3.630312 GGAAACCAAGCAACACTACAAGA 59.370 43.478 0.00 0.00 0.00 3.02
19 20 5.606348 AATACAAAGGAAACCAAGCAACA 57.394 34.783 0.00 0.00 0.00 3.33
52 53 6.844917 ACCCAATACTACTAGCTCAGGTTTAT 59.155 38.462 0.00 0.00 0.00 1.40
57 58 6.919775 ATAACCCAATACTACTAGCTCAGG 57.080 41.667 0.00 0.00 0.00 3.86
59 60 6.326583 AGCAATAACCCAATACTACTAGCTCA 59.673 38.462 0.00 0.00 0.00 4.26
68 69 8.632679 CATCATGTTTAGCAATAACCCAATACT 58.367 33.333 0.00 0.00 0.00 2.12
69 70 8.413229 ACATCATGTTTAGCAATAACCCAATAC 58.587 33.333 0.00 0.00 0.00 1.89
99 100 3.366052 GAACTAATCCACACCACCCAT 57.634 47.619 0.00 0.00 0.00 4.00
243 244 3.243101 GGAATCGACGCAACTCTCTCATA 60.243 47.826 0.00 0.00 0.00 2.15
253 254 2.433491 CACGGGGAATCGACGCAA 60.433 61.111 0.00 0.00 0.00 4.85
263 264 1.987855 GTCTGGATGGTCACGGGGA 60.988 63.158 0.00 0.00 0.00 4.81
264 265 0.686441 TAGTCTGGATGGTCACGGGG 60.686 60.000 0.00 0.00 0.00 5.73
296 297 1.890510 GTTCACCACGCCGTCCTTT 60.891 57.895 0.00 0.00 0.00 3.11
320 321 3.068448 GCAATGCACCCAATCATGATACA 59.932 43.478 9.04 1.66 0.00 2.29
380 381 4.949856 ACACAACTCTTCACCACAATTCTT 59.050 37.500 0.00 0.00 0.00 2.52
382 383 4.900635 ACACAACTCTTCACCACAATTC 57.099 40.909 0.00 0.00 0.00 2.17
415 416 7.872483 ACAATTCTTCAATAAACATGTTCCACC 59.128 33.333 12.39 0.00 0.00 4.61
456 457 1.337823 ACTCGTACTGCCGCAATTCTT 60.338 47.619 0.00 0.00 0.00 2.52
458 459 1.076332 AACTCGTACTGCCGCAATTC 58.924 50.000 0.00 0.00 0.00 2.17
459 460 0.796312 CAACTCGTACTGCCGCAATT 59.204 50.000 0.00 0.00 0.00 2.32
460 461 0.320421 ACAACTCGTACTGCCGCAAT 60.320 50.000 0.00 0.00 0.00 3.56
461 462 0.531090 AACAACTCGTACTGCCGCAA 60.531 50.000 0.00 0.00 0.00 4.85
462 463 1.068417 AACAACTCGTACTGCCGCA 59.932 52.632 0.00 0.00 0.00 5.69
463 464 1.491563 CAACAACTCGTACTGCCGC 59.508 57.895 0.00 0.00 0.00 6.53
464 465 1.491563 GCAACAACTCGTACTGCCG 59.508 57.895 0.00 0.00 0.00 5.69
465 466 0.942410 TCGCAACAACTCGTACTGCC 60.942 55.000 0.00 0.00 0.00 4.85
468 469 1.671850 CCCATCGCAACAACTCGTACT 60.672 52.381 0.00 0.00 0.00 2.73
469 470 0.719465 CCCATCGCAACAACTCGTAC 59.281 55.000 0.00 0.00 0.00 3.67
604 2426 3.575805 TCTGAAAAGGGAAATGCTTGGT 58.424 40.909 0.00 0.00 0.00 3.67
645 2467 2.749621 AGCCTCATGGAAGCTTTTTACG 59.250 45.455 0.00 0.00 31.27 3.18
666 2488 5.584649 CGGCCTTCTGTTTATTCAAGTATGA 59.415 40.000 0.00 0.00 0.00 2.15
763 2586 6.772770 TCGATGATACAAGAACGTCAAAAA 57.227 33.333 0.00 0.00 0.00 1.94
764 2587 6.237463 CGATCGATGATACAAGAACGTCAAAA 60.237 38.462 10.26 0.00 0.00 2.44
765 2588 5.229260 CGATCGATGATACAAGAACGTCAAA 59.771 40.000 10.26 0.00 0.00 2.69
929 2780 1.143183 TGCGTAAGGAGGAATCGGC 59.857 57.895 0.00 0.00 38.28 5.54
952 2803 3.919859 TTATTGCGTGCGTGCGTGC 62.920 57.895 1.68 1.68 37.81 5.34
999 2866 3.312421 TGCTTCGTCTCTGTTCCTTTTTG 59.688 43.478 0.00 0.00 0.00 2.44
1000 2867 3.541632 TGCTTCGTCTCTGTTCCTTTTT 58.458 40.909 0.00 0.00 0.00 1.94
1006 2873 3.944422 TGTTTTGCTTCGTCTCTGTTC 57.056 42.857 0.00 0.00 0.00 3.18
1059 2945 4.615901 CGTAGCCAACATCCAGCA 57.384 55.556 0.00 0.00 0.00 4.41
1628 3520 3.005539 AGCCCTGCGATGACACCT 61.006 61.111 0.00 0.00 0.00 4.00
1631 3523 1.375908 GTTGAGCCCTGCGATGACA 60.376 57.895 0.00 0.00 0.00 3.58
1640 3532 2.579201 CGGATGACGTTGAGCCCT 59.421 61.111 0.00 0.00 37.93 5.19
2270 4168 4.827087 CCGCTCACGATGCTGGCT 62.827 66.667 0.00 0.00 43.93 4.75
2345 4243 4.873129 CCGACCGTCTCCATGCCG 62.873 72.222 0.00 0.00 0.00 5.69
2498 4396 1.192146 ACTTGCCGAGGAGCCTGTTA 61.192 55.000 0.00 0.00 0.00 2.41
2786 4685 2.404215 CCGTCGACAGTGTTCTTGATT 58.596 47.619 17.16 0.00 0.00 2.57
2852 4751 1.478631 TCACATCTCTCACCGCATCT 58.521 50.000 0.00 0.00 0.00 2.90
2864 4763 0.606401 CAAGCCACCCGTTCACATCT 60.606 55.000 0.00 0.00 0.00 2.90
2867 4766 0.888736 CATCAAGCCACCCGTTCACA 60.889 55.000 0.00 0.00 0.00 3.58
2875 4774 0.889994 TGCATTGTCATCAAGCCACC 59.110 50.000 0.00 0.00 36.97 4.61
2882 4781 0.745486 CCGCCTCTGCATTGTCATCA 60.745 55.000 0.00 0.00 37.32 3.07
3202 5832 9.173021 TCATCAATTCCAACAATACTCGTAAAT 57.827 29.630 0.00 0.00 0.00 1.40
3207 5837 7.065085 AGAGTTCATCAATTCCAACAATACTCG 59.935 37.037 0.00 0.00 34.04 4.18
3280 5929 8.632679 TCAAACCTGATTTTGATATAAGATGGC 58.367 33.333 0.00 0.00 39.94 4.40
3309 5958 2.905075 TCCGCTATCATGAAACACAGG 58.095 47.619 0.00 0.00 0.00 4.00
3311 5960 6.992123 AGAATAATCCGCTATCATGAAACACA 59.008 34.615 0.00 0.00 0.00 3.72
3312 5961 7.426929 AGAATAATCCGCTATCATGAAACAC 57.573 36.000 0.00 0.00 0.00 3.32
3316 5965 8.853077 ATGAAAGAATAATCCGCTATCATGAA 57.147 30.769 0.00 0.00 0.00 2.57
3317 5966 8.724229 CAATGAAAGAATAATCCGCTATCATGA 58.276 33.333 0.00 0.00 0.00 3.07
3318 5967 7.966753 CCAATGAAAGAATAATCCGCTATCATG 59.033 37.037 0.00 0.00 0.00 3.07
3319 5968 7.121759 CCCAATGAAAGAATAATCCGCTATCAT 59.878 37.037 0.00 0.00 0.00 2.45
3320 5969 6.430925 CCCAATGAAAGAATAATCCGCTATCA 59.569 38.462 0.00 0.00 0.00 2.15
3321 5970 6.655003 TCCCAATGAAAGAATAATCCGCTATC 59.345 38.462 0.00 0.00 0.00 2.08
3322 5971 6.542821 TCCCAATGAAAGAATAATCCGCTAT 58.457 36.000 0.00 0.00 0.00 2.97
3323 5972 5.935945 TCCCAATGAAAGAATAATCCGCTA 58.064 37.500 0.00 0.00 0.00 4.26
3324 5973 4.792068 TCCCAATGAAAGAATAATCCGCT 58.208 39.130 0.00 0.00 0.00 5.52
3332 5981 2.806945 TCGCCTCCCAATGAAAGAAT 57.193 45.000 0.00 0.00 0.00 2.40
3341 5990 1.885887 CAAGAACAAATCGCCTCCCAA 59.114 47.619 0.00 0.00 0.00 4.12
3344 5993 4.759516 TTAACAAGAACAAATCGCCTCC 57.240 40.909 0.00 0.00 0.00 4.30
3385 6034 4.251268 GCGGGTCTTGATACTAACAAAGT 58.749 43.478 0.00 0.00 42.62 2.66
3392 6041 2.100916 GAGCTTGCGGGTCTTGATACTA 59.899 50.000 0.00 0.00 39.18 1.82
3394 6043 1.291132 GAGCTTGCGGGTCTTGATAC 58.709 55.000 0.00 0.00 39.18 2.24
3401 6050 4.400961 AGGCTGAGCTTGCGGGTC 62.401 66.667 3.72 2.38 42.27 4.46
3405 6054 2.825726 TTCGAGAGGCTGAGCTTGCG 62.826 60.000 3.72 3.10 0.00 4.85
3407 6056 0.529833 TCTTCGAGAGGCTGAGCTTG 59.470 55.000 3.72 0.00 0.00 4.01
3409 6058 0.746063 CATCTTCGAGAGGCTGAGCT 59.254 55.000 3.72 0.00 0.00 4.09
3416 6065 5.697473 TCACTATAAGCATCTTCGAGAGG 57.303 43.478 0.00 0.00 0.00 3.69
3425 6074 9.491934 CACGTACATACTATCACTATAAGCATC 57.508 37.037 0.00 0.00 0.00 3.91
3433 6082 5.458015 GCATGCACGTACATACTATCACTA 58.542 41.667 14.21 0.00 0.00 2.74
3434 6083 4.299155 GCATGCACGTACATACTATCACT 58.701 43.478 14.21 0.00 0.00 3.41
3435 6084 3.428870 GGCATGCACGTACATACTATCAC 59.571 47.826 21.36 0.00 0.00 3.06
3437 6086 3.914312 AGGCATGCACGTACATACTATC 58.086 45.455 21.36 0.00 0.00 2.08
3438 6087 4.202212 TGAAGGCATGCACGTACATACTAT 60.202 41.667 21.36 0.00 0.00 2.12
3439 6088 3.131400 TGAAGGCATGCACGTACATACTA 59.869 43.478 21.36 0.00 0.00 1.82
3440 6089 2.093711 TGAAGGCATGCACGTACATACT 60.094 45.455 21.36 0.21 0.00 2.12
3441 6090 2.030457 GTGAAGGCATGCACGTACATAC 59.970 50.000 21.36 0.00 0.00 2.39
3445 6094 1.086696 ATGTGAAGGCATGCACGTAC 58.913 50.000 21.36 13.07 37.83 3.67
3464 6113 6.946340 ACAGATGTTTACATACACTCATCCA 58.054 36.000 0.00 0.00 36.57 3.41
3510 6164 3.896648 AACATCAAGAAATTGACGCGT 57.103 38.095 13.85 13.85 33.23 6.01
3511 6165 4.730042 CCATAACATCAAGAAATTGACGCG 59.270 41.667 3.53 3.53 33.23 6.01
3512 6166 4.500477 GCCATAACATCAAGAAATTGACGC 59.500 41.667 0.00 0.00 33.23 5.19
3513 6167 5.036737 GGCCATAACATCAAGAAATTGACG 58.963 41.667 0.00 0.00 33.23 4.35
3514 6168 5.036737 CGGCCATAACATCAAGAAATTGAC 58.963 41.667 2.24 0.00 33.23 3.18
3515 6169 4.946772 TCGGCCATAACATCAAGAAATTGA 59.053 37.500 2.24 0.00 35.15 2.57
3516 6170 5.247507 TCGGCCATAACATCAAGAAATTG 57.752 39.130 2.24 0.00 0.00 2.32
3517 6171 5.593909 TCATCGGCCATAACATCAAGAAATT 59.406 36.000 2.24 0.00 0.00 1.82
3518 6172 5.132502 TCATCGGCCATAACATCAAGAAAT 58.867 37.500 2.24 0.00 0.00 2.17
3541 6195 1.204941 GTCGTGGTGCTAGGAGAACAT 59.795 52.381 0.00 0.00 0.00 2.71
3559 6213 1.194772 GCTGAAACGCCTACTTGTGTC 59.805 52.381 0.00 0.00 0.00 3.67
3560 6214 1.226746 GCTGAAACGCCTACTTGTGT 58.773 50.000 0.00 0.00 0.00 3.72
3561 6215 0.517316 GGCTGAAACGCCTACTTGTG 59.483 55.000 0.00 0.00 46.63 3.33
3562 6216 2.928416 GGCTGAAACGCCTACTTGT 58.072 52.632 0.00 0.00 46.63 3.16
3571 6225 0.310854 AAAAAGAGGCGGCTGAAACG 59.689 50.000 19.63 0.00 0.00 3.60
3599 6253 5.279056 CCATGGCAATATGATGTGCATTACA 60.279 40.000 0.00 0.00 42.74 2.41
3600 6254 5.165676 CCATGGCAATATGATGTGCATTAC 58.834 41.667 0.00 0.00 42.74 1.89
3601 6255 4.221041 CCCATGGCAATATGATGTGCATTA 59.779 41.667 6.09 0.00 42.74 1.90
3602 6256 3.007506 CCCATGGCAATATGATGTGCATT 59.992 43.478 6.09 0.00 42.74 3.56
3603 6257 2.565391 CCCATGGCAATATGATGTGCAT 59.435 45.455 6.09 0.00 42.74 3.96
3604 6258 1.964933 CCCATGGCAATATGATGTGCA 59.035 47.619 6.09 0.00 42.74 4.57
3605 6259 1.965643 ACCCATGGCAATATGATGTGC 59.034 47.619 6.09 0.00 40.14 4.57
3606 6260 3.893200 AGAACCCATGGCAATATGATGTG 59.107 43.478 6.09 0.00 0.00 3.21
3607 6261 4.188937 AGAACCCATGGCAATATGATGT 57.811 40.909 6.09 0.00 0.00 3.06
3608 6262 4.342951 ACAAGAACCCATGGCAATATGATG 59.657 41.667 6.09 0.02 0.00 3.07
3609 6263 4.549668 ACAAGAACCCATGGCAATATGAT 58.450 39.130 6.09 0.00 0.00 2.45
3610 6264 3.979911 ACAAGAACCCATGGCAATATGA 58.020 40.909 6.09 0.00 0.00 2.15
3611 6265 4.160065 TGAACAAGAACCCATGGCAATATG 59.840 41.667 6.09 4.89 0.00 1.78
3612 6266 4.160252 GTGAACAAGAACCCATGGCAATAT 59.840 41.667 6.09 0.00 0.00 1.28
3613 6267 3.509575 GTGAACAAGAACCCATGGCAATA 59.490 43.478 6.09 0.00 0.00 1.90
3614 6268 2.299867 GTGAACAAGAACCCATGGCAAT 59.700 45.455 6.09 0.00 0.00 3.56
3615 6269 1.686052 GTGAACAAGAACCCATGGCAA 59.314 47.619 6.09 0.00 0.00 4.52
3616 6270 1.327303 GTGAACAAGAACCCATGGCA 58.673 50.000 6.09 0.00 0.00 4.92
3617 6271 1.000274 GTGTGAACAAGAACCCATGGC 60.000 52.381 6.09 0.00 0.00 4.40
3618 6272 2.305928 TGTGTGAACAAGAACCCATGG 58.694 47.619 4.14 4.14 0.00 3.66
3619 6273 4.589216 AATGTGTGAACAAGAACCCATG 57.411 40.909 0.00 0.00 0.00 3.66
3620 6274 5.278957 GCTAAATGTGTGAACAAGAACCCAT 60.279 40.000 0.00 0.00 0.00 4.00
3621 6275 4.037446 GCTAAATGTGTGAACAAGAACCCA 59.963 41.667 0.00 0.00 0.00 4.51
3622 6276 4.037446 TGCTAAATGTGTGAACAAGAACCC 59.963 41.667 0.00 0.00 0.00 4.11
3623 6277 5.008613 TCTGCTAAATGTGTGAACAAGAACC 59.991 40.000 0.00 0.00 0.00 3.62
3624 6278 6.060028 TCTGCTAAATGTGTGAACAAGAAC 57.940 37.500 0.00 0.00 0.00 3.01
3625 6279 6.691754 TTCTGCTAAATGTGTGAACAAGAA 57.308 33.333 0.00 0.00 0.00 2.52
3626 6280 6.318648 AGTTTCTGCTAAATGTGTGAACAAGA 59.681 34.615 0.00 0.00 0.00 3.02
3627 6281 6.498304 AGTTTCTGCTAAATGTGTGAACAAG 58.502 36.000 0.00 0.00 0.00 3.16
3628 6282 6.449635 AGTTTCTGCTAAATGTGTGAACAA 57.550 33.333 0.00 0.00 0.00 2.83
3629 6283 6.765989 ACTAGTTTCTGCTAAATGTGTGAACA 59.234 34.615 0.00 0.00 0.00 3.18
3630 6284 7.190920 ACTAGTTTCTGCTAAATGTGTGAAC 57.809 36.000 0.00 0.00 0.00 3.18
3631 6285 8.896320 TTACTAGTTTCTGCTAAATGTGTGAA 57.104 30.769 0.00 0.00 0.00 3.18
3632 6286 7.117812 GCTTACTAGTTTCTGCTAAATGTGTGA 59.882 37.037 0.00 0.00 0.00 3.58
3633 6287 7.237173 GCTTACTAGTTTCTGCTAAATGTGTG 58.763 38.462 0.00 0.00 0.00 3.82
3634 6288 6.090898 CGCTTACTAGTTTCTGCTAAATGTGT 59.909 38.462 0.00 0.00 0.00 3.72
3635 6289 6.090898 ACGCTTACTAGTTTCTGCTAAATGTG 59.909 38.462 0.00 0.00 0.00 3.21
3636 6290 6.090898 CACGCTTACTAGTTTCTGCTAAATGT 59.909 38.462 0.00 0.00 0.00 2.71
3637 6291 6.470160 CACGCTTACTAGTTTCTGCTAAATG 58.530 40.000 0.00 0.00 0.00 2.32
3638 6292 5.063564 GCACGCTTACTAGTTTCTGCTAAAT 59.936 40.000 0.00 0.00 0.00 1.40
3639 6293 4.387862 GCACGCTTACTAGTTTCTGCTAAA 59.612 41.667 0.00 0.00 0.00 1.85
3640 6294 3.924686 GCACGCTTACTAGTTTCTGCTAA 59.075 43.478 0.00 0.00 0.00 3.09
3641 6295 3.057104 TGCACGCTTACTAGTTTCTGCTA 60.057 43.478 0.00 0.00 0.00 3.49
3642 6296 2.288825 TGCACGCTTACTAGTTTCTGCT 60.289 45.455 0.00 0.00 0.00 4.24
3643 6297 2.066262 TGCACGCTTACTAGTTTCTGC 58.934 47.619 0.00 2.40 0.00 4.26
3644 6298 2.090658 CGTGCACGCTTACTAGTTTCTG 59.909 50.000 28.16 0.00 0.00 3.02
3645 6299 2.288030 ACGTGCACGCTTACTAGTTTCT 60.288 45.455 37.35 11.79 44.43 2.52
3646 6300 2.056577 ACGTGCACGCTTACTAGTTTC 58.943 47.619 37.35 0.00 44.43 2.78
3647 6301 1.790623 CACGTGCACGCTTACTAGTTT 59.209 47.619 37.35 12.57 44.43 2.66
3818 7459 2.876581 GGGGGTTCATGGTTTACCG 58.123 57.895 0.00 0.00 39.43 4.02
3835 7476 2.859165 ACTGGTGAACATGTGTAGGG 57.141 50.000 0.00 0.00 0.00 3.53
3941 7582 1.002868 AGTCCCATCACTGCACAGC 60.003 57.895 0.00 0.00 0.00 4.40
3974 7615 1.139734 CCTCTGTCGTGGTCGGATG 59.860 63.158 0.00 0.00 37.69 3.51
3977 7618 4.436998 GCCCTCTGTCGTGGTCGG 62.437 72.222 0.00 0.00 37.69 4.79
3981 7622 1.374758 GTCAAGCCCTCTGTCGTGG 60.375 63.158 0.00 0.00 0.00 4.94
4121 7762 9.705290 GTTTGGGATTTCACAACATTTTAGTAT 57.295 29.630 0.00 0.00 39.27 2.12
4122 7763 8.696374 TGTTTGGGATTTCACAACATTTTAGTA 58.304 29.630 0.00 0.00 39.27 1.82
4123 7764 7.560368 TGTTTGGGATTTCACAACATTTTAGT 58.440 30.769 0.00 0.00 39.27 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.