Multiple sequence alignment - TraesCS7B01G330400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G330400 chr7B 100.000 2597 0 0 1 2597 585943554 585946150 0.000000e+00 4796.0
1 TraesCS7B01G330400 chr7B 89.083 1319 104 25 486 1778 586066791 586068095 0.000000e+00 1602.0
2 TraesCS7B01G330400 chr7B 90.274 730 61 7 824 1543 585991623 585992352 0.000000e+00 946.0
3 TraesCS7B01G330400 chr7B 93.157 643 39 5 1959 2597 585999039 585999680 0.000000e+00 939.0
4 TraesCS7B01G330400 chr7B 82.257 1037 108 40 703 1679 586116142 586117162 0.000000e+00 826.0
5 TraesCS7B01G330400 chr7B 83.232 823 87 27 987 1778 586240663 586241465 0.000000e+00 708.0
6 TraesCS7B01G330400 chr7B 94.611 334 15 3 1535 1866 585997018 585997350 4.960000e-142 514.0
7 TraesCS7B01G330400 chr7B 80.581 551 75 19 1113 1641 586128947 586129487 1.870000e-106 396.0
8 TraesCS7B01G330400 chr7B 92.973 185 11 2 1 185 710407351 710407169 4.260000e-68 268.0
9 TraesCS7B01G330400 chr7B 86.512 215 23 5 688 896 585912253 585912467 5.590000e-57 231.0
10 TraesCS7B01G330400 chr7B 83.772 228 22 11 400 615 586052478 586052702 4.380000e-48 202.0
11 TraesCS7B01G330400 chr7B 85.437 206 14 11 703 892 586237162 586237367 1.580000e-47 200.0
12 TraesCS7B01G330400 chr7B 78.652 267 31 13 2091 2337 586241514 586241774 1.240000e-33 154.0
13 TraesCS7B01G330400 chr7B 93.069 101 4 2 1883 1980 585997333 585997433 7.490000e-31 145.0
14 TraesCS7B01G330400 chr7B 84.298 121 15 4 2098 2218 586090050 586090166 5.870000e-22 115.0
15 TraesCS7B01G330400 chr7B 83.051 118 10 8 348 459 586066680 586066793 5.910000e-17 99.0
16 TraesCS7B01G330400 chr7A 91.297 1195 73 13 688 1866 624887031 624888210 0.000000e+00 1602.0
17 TraesCS7B01G330400 chr7A 88.338 1149 89 23 655 1778 624840386 624841514 0.000000e+00 1338.0
18 TraesCS7B01G330400 chr7A 80.944 1165 132 50 703 1791 624957370 624958520 0.000000e+00 839.0
19 TraesCS7B01G330400 chr7A 89.688 320 24 4 2050 2365 624889088 624889402 1.450000e-107 399.0
20 TraesCS7B01G330400 chr7A 95.960 99 3 1 1883 1981 624888193 624888290 2.670000e-35 159.0
21 TraesCS7B01G330400 chr7A 80.102 196 30 8 2081 2273 624959225 624959414 1.250000e-28 137.0
22 TraesCS7B01G330400 chr7A 86.047 129 9 5 400 521 624839800 624839926 2.100000e-26 130.0
23 TraesCS7B01G330400 chr7A 77.308 260 11 20 400 626 624884851 624885095 2.730000e-20 110.0
24 TraesCS7B01G330400 chr7D 89.378 1158 66 20 649 1786 542885665 542886785 0.000000e+00 1404.0
25 TraesCS7B01G330400 chr7D 91.590 975 50 10 902 1866 542825882 542826834 0.000000e+00 1317.0
26 TraesCS7B01G330400 chr7D 82.295 1124 119 44 703 1777 542957324 542958416 0.000000e+00 900.0
27 TraesCS7B01G330400 chr7D 83.832 501 42 25 400 890 542824915 542825386 8.530000e-120 440.0
28 TraesCS7B01G330400 chr7D 84.118 340 40 10 1 334 159987505 159987174 1.500000e-82 316.0
29 TraesCS7B01G330400 chr7D 82.787 366 42 19 9 363 57800255 57799900 9.030000e-80 307.0
30 TraesCS7B01G330400 chr7D 93.000 200 12 2 2105 2304 542886804 542887001 9.090000e-75 291.0
31 TraesCS7B01G330400 chr7D 94.410 161 9 0 2050 2210 542826953 542827113 5.550000e-62 248.0
32 TraesCS7B01G330400 chr7D 94.631 149 5 1 1883 2028 542826817 542826965 7.230000e-56 228.0
33 TraesCS7B01G330400 chr7D 89.617 183 12 4 400 582 542885467 542885642 2.600000e-55 226.0
34 TraesCS7B01G330400 chr7D 80.224 268 37 10 2081 2337 542958447 542958709 1.230000e-43 187.0
35 TraesCS7B01G330400 chr7D 76.774 155 28 7 1642 1794 542227156 542227304 2.140000e-11 80.5
36 TraesCS7B01G330400 chr7D 86.486 74 7 1 400 470 542132303 542132376 7.710000e-11 78.7
37 TraesCS7B01G330400 chr5B 94.708 359 4 1 1 359 595101985 595102328 6.320000e-151 544.0
38 TraesCS7B01G330400 chr5B 92.916 367 10 2 1 367 37607272 37607622 1.070000e-143 520.0
39 TraesCS7B01G330400 chr5B 92.643 367 8 3 1 366 20155613 20155265 6.410000e-141 510.0
40 TraesCS7B01G330400 chr5B 83.333 96 13 3 2367 2460 382703929 382704023 4.600000e-13 86.1
41 TraesCS7B01G330400 chr2B 93.989 366 5 3 1 365 53376389 53376738 2.940000e-149 538.0
42 TraesCS7B01G330400 chr2B 80.189 106 19 2 2359 2463 639023095 639023199 7.710000e-11 78.7
43 TraesCS7B01G330400 chr1B 94.429 359 5 1 1 359 19672900 19673243 2.940000e-149 538.0
44 TraesCS7B01G330400 chr1B 94.183 361 4 2 1 359 19762245 19762590 3.800000e-148 534.0
45 TraesCS7B01G330400 chr1B 93.315 359 9 1 1 359 22038151 22038494 1.380000e-142 516.0
46 TraesCS7B01G330400 chr3B 93.593 359 5 8 1 359 49247250 49247590 1.070000e-143 520.0
47 TraesCS7B01G330400 chr3B 82.474 97 14 3 2369 2463 469336565 469336660 5.960000e-12 82.4
48 TraesCS7B01G330400 chr4B 93.036 359 9 2 1 359 4148195 4148537 6.410000e-141 510.0
49 TraesCS7B01G330400 chr6D 76.154 780 107 42 881 1613 392586194 392586941 1.150000e-88 337.0
50 TraesCS7B01G330400 chr4D 83.668 349 33 15 1 334 505907145 505906806 9.030000e-80 307.0
51 TraesCS7B01G330400 chr1A 82.143 364 47 14 1 359 583937870 583937520 1.950000e-76 296.0
52 TraesCS7B01G330400 chr6A 86.139 101 13 1 2364 2463 572101046 572101146 9.830000e-20 108.0
53 TraesCS7B01G330400 chr6A 84.404 109 16 1 2356 2463 572024476 572024584 3.530000e-19 106.0
54 TraesCS7B01G330400 chr5D 86.598 97 12 1 2367 2462 362945619 362945523 3.530000e-19 106.0
55 TraesCS7B01G330400 chr5D 82.883 111 18 1 2354 2463 362963559 362963449 5.910000e-17 99.0
56 TraesCS7B01G330400 chr5D 83.673 98 15 1 2367 2463 235114884 235114787 9.900000e-15 91.6
57 TraesCS7B01G330400 chr2A 84.158 101 15 1 2364 2463 566850017 566849917 2.130000e-16 97.1
58 TraesCS7B01G330400 chr3A 83.673 98 15 1 2364 2460 519092475 519092572 9.900000e-15 91.6
59 TraesCS7B01G330400 chr1D 82.178 101 17 1 2364 2463 486894955 486895055 4.600000e-13 86.1
60 TraesCS7B01G330400 chr3D 100.000 29 0 0 2386 2414 426456097 426456125 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G330400 chr7B 585943554 585946150 2596 False 4796.000000 4796 100.000000 1 2597 1 chr7B.!!$F2 2596
1 TraesCS7B01G330400 chr7B 585991623 585992352 729 False 946.000000 946 90.274000 824 1543 1 chr7B.!!$F3 719
2 TraesCS7B01G330400 chr7B 586066680 586068095 1415 False 850.500000 1602 86.067000 348 1778 2 chr7B.!!$F9 1430
3 TraesCS7B01G330400 chr7B 586116142 586117162 1020 False 826.000000 826 82.257000 703 1679 1 chr7B.!!$F6 976
4 TraesCS7B01G330400 chr7B 585997018 585999680 2662 False 532.666667 939 93.612333 1535 2597 3 chr7B.!!$F8 1062
5 TraesCS7B01G330400 chr7B 586128947 586129487 540 False 396.000000 396 80.581000 1113 1641 1 chr7B.!!$F7 528
6 TraesCS7B01G330400 chr7B 586237162 586241774 4612 False 354.000000 708 82.440333 703 2337 3 chr7B.!!$F10 1634
7 TraesCS7B01G330400 chr7A 624839800 624841514 1714 False 734.000000 1338 87.192500 400 1778 2 chr7A.!!$F1 1378
8 TraesCS7B01G330400 chr7A 624884851 624889402 4551 False 567.500000 1602 88.563250 400 2365 4 chr7A.!!$F2 1965
9 TraesCS7B01G330400 chr7A 624957370 624959414 2044 False 488.000000 839 80.523000 703 2273 2 chr7A.!!$F3 1570
10 TraesCS7B01G330400 chr7D 542885467 542887001 1534 False 640.333333 1404 90.665000 400 2304 3 chr7D.!!$F4 1904
11 TraesCS7B01G330400 chr7D 542824915 542827113 2198 False 558.250000 1317 91.115750 400 2210 4 chr7D.!!$F3 1810
12 TraesCS7B01G330400 chr7D 542957324 542958709 1385 False 543.500000 900 81.259500 703 2337 2 chr7D.!!$F5 1634
13 TraesCS7B01G330400 chr6D 392586194 392586941 747 False 337.000000 337 76.154000 881 1613 1 chr6D.!!$F1 732

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
249 250 0.037590 TTGGTCCCGGTTCTGGATTG 59.962 55.0 0.0 0.00 33.65 2.67 F
433 434 0.039527 TCGACATGCCGATATGACCG 60.040 55.0 0.0 8.25 33.14 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1273 6891 1.004320 CCATTCGGTTGTCGGGACA 60.004 57.895 0.0 0.0 39.98 4.02 R
1831 7507 2.491675 AAAGAAAACTAGGCCCCTCG 57.508 50.000 0.0 0.0 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 9.046296 AGCTAGCTAACACAATATATGAAACAC 57.954 33.333 17.69 0.00 0.00 3.32
42 43 8.283291 GCTAGCTAACACAATATATGAAACACC 58.717 37.037 7.70 0.00 0.00 4.16
43 44 9.547753 CTAGCTAACACAATATATGAAACACCT 57.452 33.333 0.00 0.00 0.00 4.00
45 46 9.899661 AGCTAACACAATATATGAAACACCTAA 57.100 29.630 0.00 0.00 0.00 2.69
59 60 8.136563 TGAAACACCTAATTAAATTAACCCCC 57.863 34.615 0.00 0.00 0.00 5.40
73 74 4.208426 CCCCCAAAACTCCCAACC 57.792 61.111 0.00 0.00 0.00 3.77
74 75 1.546738 CCCCCAAAACTCCCAACCT 59.453 57.895 0.00 0.00 0.00 3.50
75 76 0.541998 CCCCCAAAACTCCCAACCTC 60.542 60.000 0.00 0.00 0.00 3.85
76 77 0.541998 CCCCAAAACTCCCAACCTCC 60.542 60.000 0.00 0.00 0.00 4.30
77 78 0.541998 CCCAAAACTCCCAACCTCCC 60.542 60.000 0.00 0.00 0.00 4.30
78 79 0.541998 CCAAAACTCCCAACCTCCCC 60.542 60.000 0.00 0.00 0.00 4.81
79 80 0.482887 CAAAACTCCCAACCTCCCCT 59.517 55.000 0.00 0.00 0.00 4.79
80 81 0.778083 AAAACTCCCAACCTCCCCTC 59.222 55.000 0.00 0.00 0.00 4.30
81 82 1.140772 AAACTCCCAACCTCCCCTCC 61.141 60.000 0.00 0.00 0.00 4.30
82 83 2.062448 AACTCCCAACCTCCCCTCCT 62.062 60.000 0.00 0.00 0.00 3.69
83 84 1.229984 CTCCCAACCTCCCCTCCTT 60.230 63.158 0.00 0.00 0.00 3.36
84 85 0.846870 CTCCCAACCTCCCCTCCTTT 60.847 60.000 0.00 0.00 0.00 3.11
85 86 0.845102 TCCCAACCTCCCCTCCTTTC 60.845 60.000 0.00 0.00 0.00 2.62
86 87 1.140134 CCCAACCTCCCCTCCTTTCA 61.140 60.000 0.00 0.00 0.00 2.69
87 88 0.777446 CCAACCTCCCCTCCTTTCAA 59.223 55.000 0.00 0.00 0.00 2.69
88 89 1.146982 CCAACCTCCCCTCCTTTCAAA 59.853 52.381 0.00 0.00 0.00 2.69
89 90 2.425683 CCAACCTCCCCTCCTTTCAAAA 60.426 50.000 0.00 0.00 0.00 2.44
90 91 3.304829 CAACCTCCCCTCCTTTCAAAAA 58.695 45.455 0.00 0.00 0.00 1.94
112 113 5.366482 AAAATACAAAAACCCCAGCAACT 57.634 34.783 0.00 0.00 0.00 3.16
113 114 4.335400 AATACAAAAACCCCAGCAACTG 57.665 40.909 0.00 0.00 0.00 3.16
125 126 1.154150 GCAACTGGAATGCTGACGC 60.154 57.895 0.00 0.00 40.64 5.19
126 127 1.133253 CAACTGGAATGCTGACGCG 59.867 57.895 3.53 3.53 39.65 6.01
127 128 1.301716 AACTGGAATGCTGACGCGT 60.302 52.632 13.85 13.85 39.65 6.01
128 129 1.568612 AACTGGAATGCTGACGCGTG 61.569 55.000 20.70 3.71 39.65 5.34
129 130 2.741985 TGGAATGCTGACGCGTGG 60.742 61.111 20.70 10.85 39.65 4.94
130 131 2.434185 GGAATGCTGACGCGTGGA 60.434 61.111 20.70 4.37 39.65 4.02
131 132 1.815421 GGAATGCTGACGCGTGGAT 60.815 57.895 20.70 7.22 39.65 3.41
132 133 1.349627 GAATGCTGACGCGTGGATG 59.650 57.895 20.70 4.59 39.65 3.51
133 134 2.637715 GAATGCTGACGCGTGGATGC 62.638 60.000 20.70 15.70 39.65 3.91
134 135 3.956305 ATGCTGACGCGTGGATGCA 62.956 57.895 20.70 20.99 39.65 3.96
135 136 3.197790 GCTGACGCGTGGATGCAT 61.198 61.111 20.70 0.00 34.15 3.96
136 137 2.753966 GCTGACGCGTGGATGCATT 61.754 57.895 20.70 0.00 34.15 3.56
137 138 1.796151 CTGACGCGTGGATGCATTT 59.204 52.632 20.70 0.00 34.15 2.32
138 139 0.168788 CTGACGCGTGGATGCATTTT 59.831 50.000 20.70 0.00 34.15 1.82
139 140 0.109827 TGACGCGTGGATGCATTTTG 60.110 50.000 20.70 0.00 34.15 2.44
140 141 0.798009 GACGCGTGGATGCATTTTGG 60.798 55.000 20.70 0.00 34.15 3.28
141 142 1.212490 CGCGTGGATGCATTTTGGT 59.788 52.632 0.00 0.00 34.15 3.67
142 143 0.798009 CGCGTGGATGCATTTTGGTC 60.798 55.000 0.00 0.00 34.15 4.02
143 144 0.458370 GCGTGGATGCATTTTGGTCC 60.458 55.000 0.00 0.00 34.15 4.46
144 145 0.173255 CGTGGATGCATTTTGGTCCC 59.827 55.000 0.00 0.00 0.00 4.46
145 146 0.173255 GTGGATGCATTTTGGTCCCG 59.827 55.000 0.00 0.00 0.00 5.14
146 147 0.969917 TGGATGCATTTTGGTCCCGG 60.970 55.000 0.00 0.00 0.00 5.73
147 148 0.970427 GGATGCATTTTGGTCCCGGT 60.970 55.000 0.00 0.00 0.00 5.28
148 149 0.894835 GATGCATTTTGGTCCCGGTT 59.105 50.000 0.00 0.00 0.00 4.44
149 150 0.607620 ATGCATTTTGGTCCCGGTTG 59.392 50.000 0.00 0.00 0.00 3.77
150 151 1.291906 GCATTTTGGTCCCGGTTGG 59.708 57.895 0.00 0.00 0.00 3.77
151 152 1.468506 GCATTTTGGTCCCGGTTGGT 61.469 55.000 0.00 0.00 34.77 3.67
152 153 0.316841 CATTTTGGTCCCGGTTGGTG 59.683 55.000 0.00 0.00 34.77 4.17
153 154 0.830023 ATTTTGGTCCCGGTTGGTGG 60.830 55.000 0.00 0.00 34.77 4.61
154 155 4.589675 TTGGTCCCGGTTGGTGGC 62.590 66.667 0.00 0.00 34.77 5.01
163 164 4.941309 GTTGGTGGCGTCCCGGTT 62.941 66.667 0.00 0.00 0.00 4.44
164 165 4.939368 TTGGTGGCGTCCCGGTTG 62.939 66.667 0.00 0.00 0.00 3.77
184 185 4.589675 GCCACCAACCGGGACCAA 62.590 66.667 6.32 0.00 41.15 3.67
185 186 2.196229 CCACCAACCGGGACCAAA 59.804 61.111 6.32 0.00 41.15 3.28
186 187 1.901464 CCACCAACCGGGACCAAAG 60.901 63.158 6.32 0.00 41.15 2.77
187 188 1.901464 CACCAACCGGGACCAAAGG 60.901 63.158 6.32 0.00 41.15 3.11
188 189 2.989253 CCAACCGGGACCAAAGGC 60.989 66.667 6.32 0.00 40.01 4.35
189 190 2.989253 CAACCGGGACCAAAGGCC 60.989 66.667 6.32 0.00 0.00 5.19
190 191 4.295199 AACCGGGACCAAAGGCCC 62.295 66.667 6.32 0.00 36.26 5.80
194 195 4.382541 GGGACCAAAGGCCCCCTG 62.383 72.222 0.00 0.00 36.40 4.45
195 196 3.264845 GGACCAAAGGCCCCCTGA 61.265 66.667 0.00 0.00 32.13 3.86
196 197 2.035783 GACCAAAGGCCCCCTGAC 59.964 66.667 0.00 0.00 32.13 3.51
197 198 2.452491 ACCAAAGGCCCCCTGACT 60.452 61.111 0.00 0.00 32.13 3.41
198 199 2.036256 CCAAAGGCCCCCTGACTG 59.964 66.667 0.00 0.00 32.13 3.51
199 200 2.036256 CAAAGGCCCCCTGACTGG 59.964 66.667 0.00 0.00 32.13 4.00
223 224 4.662961 CGCACAGAGCCACGTGGA 62.663 66.667 38.30 0.00 41.38 4.02
224 225 2.740055 GCACAGAGCCACGTGGAG 60.740 66.667 38.30 23.98 37.39 3.86
225 226 2.047844 CACAGAGCCACGTGGAGG 60.048 66.667 38.30 23.37 37.39 4.30
232 233 3.266964 CCACGTGGAGGCACATTG 58.733 61.111 31.31 0.00 37.39 2.82
233 234 2.334946 CCACGTGGAGGCACATTGG 61.335 63.158 31.31 0.00 37.39 3.16
234 235 1.600636 CACGTGGAGGCACATTGGT 60.601 57.895 7.95 0.00 0.00 3.67
235 236 1.302511 ACGTGGAGGCACATTGGTC 60.303 57.895 0.00 0.00 0.00 4.02
236 237 2.040544 CGTGGAGGCACATTGGTCC 61.041 63.158 0.00 0.00 0.00 4.46
237 238 1.678970 GTGGAGGCACATTGGTCCC 60.679 63.158 0.00 0.00 0.00 4.46
238 239 2.438434 GGAGGCACATTGGTCCCG 60.438 66.667 0.00 0.00 0.00 5.14
239 240 2.438434 GAGGCACATTGGTCCCGG 60.438 66.667 0.00 0.00 0.00 5.73
240 241 3.256960 AGGCACATTGGTCCCGGT 61.257 61.111 0.00 0.00 0.00 5.28
241 242 2.282887 GGCACATTGGTCCCGGTT 60.283 61.111 0.00 0.00 0.00 4.44
242 243 2.340328 GGCACATTGGTCCCGGTTC 61.340 63.158 0.00 0.00 0.00 3.62
243 244 1.303317 GCACATTGGTCCCGGTTCT 60.303 57.895 0.00 0.00 0.00 3.01
244 245 1.586154 GCACATTGGTCCCGGTTCTG 61.586 60.000 0.00 0.00 0.00 3.02
245 246 0.960364 CACATTGGTCCCGGTTCTGG 60.960 60.000 0.00 0.00 0.00 3.86
246 247 1.131303 ACATTGGTCCCGGTTCTGGA 61.131 55.000 0.00 0.00 0.00 3.86
247 248 0.255890 CATTGGTCCCGGTTCTGGAT 59.744 55.000 0.00 0.00 33.65 3.41
248 249 0.999712 ATTGGTCCCGGTTCTGGATT 59.000 50.000 0.00 0.00 33.65 3.01
249 250 0.037590 TTGGTCCCGGTTCTGGATTG 59.962 55.000 0.00 0.00 33.65 2.67
250 251 0.838554 TGGTCCCGGTTCTGGATTGA 60.839 55.000 0.00 0.00 33.65 2.57
251 252 0.326927 GGTCCCGGTTCTGGATTGAA 59.673 55.000 0.00 0.00 33.65 2.69
252 253 1.450025 GTCCCGGTTCTGGATTGAAC 58.550 55.000 0.00 0.00 43.88 3.18
257 258 3.948735 GTTCTGGATTGAACCGGGA 57.051 52.632 6.32 0.00 40.10 5.14
258 259 1.739067 GTTCTGGATTGAACCGGGAG 58.261 55.000 6.32 0.00 40.10 4.30
259 260 1.003233 GTTCTGGATTGAACCGGGAGT 59.997 52.381 6.32 0.00 40.10 3.85
260 261 2.235402 GTTCTGGATTGAACCGGGAGTA 59.765 50.000 6.32 0.00 40.10 2.59
261 262 2.542550 TCTGGATTGAACCGGGAGTAA 58.457 47.619 6.32 0.00 36.97 2.24
262 263 3.112263 TCTGGATTGAACCGGGAGTAAT 58.888 45.455 6.32 0.27 36.97 1.89
263 264 3.118408 TCTGGATTGAACCGGGAGTAATG 60.118 47.826 6.32 0.00 36.97 1.90
264 265 2.092646 TGGATTGAACCGGGAGTAATGG 60.093 50.000 6.32 0.00 0.00 3.16
265 266 2.572290 GATTGAACCGGGAGTAATGGG 58.428 52.381 6.32 0.00 0.00 4.00
266 267 1.364269 TTGAACCGGGAGTAATGGGT 58.636 50.000 6.32 0.00 0.00 4.51
267 268 0.616371 TGAACCGGGAGTAATGGGTG 59.384 55.000 6.32 0.00 31.96 4.61
268 269 0.107361 GAACCGGGAGTAATGGGTGG 60.107 60.000 6.32 0.00 31.96 4.61
269 270 0.548197 AACCGGGAGTAATGGGTGGA 60.548 55.000 6.32 0.00 31.96 4.02
270 271 0.981277 ACCGGGAGTAATGGGTGGAG 60.981 60.000 6.32 0.00 0.00 3.86
271 272 1.696097 CCGGGAGTAATGGGTGGAGG 61.696 65.000 0.00 0.00 0.00 4.30
272 273 0.981277 CGGGAGTAATGGGTGGAGGT 60.981 60.000 0.00 0.00 0.00 3.85
273 274 1.690209 CGGGAGTAATGGGTGGAGGTA 60.690 57.143 0.00 0.00 0.00 3.08
274 275 2.702748 GGGAGTAATGGGTGGAGGTAT 58.297 52.381 0.00 0.00 0.00 2.73
275 276 3.053826 GGGAGTAATGGGTGGAGGTATT 58.946 50.000 0.00 0.00 0.00 1.89
276 277 4.237018 GGGAGTAATGGGTGGAGGTATTA 58.763 47.826 0.00 0.00 0.00 0.98
277 278 4.286291 GGGAGTAATGGGTGGAGGTATTAG 59.714 50.000 0.00 0.00 0.00 1.73
278 279 4.906060 GGAGTAATGGGTGGAGGTATTAGT 59.094 45.833 0.00 0.00 0.00 2.24
279 280 6.080009 GGAGTAATGGGTGGAGGTATTAGTA 58.920 44.000 0.00 0.00 0.00 1.82
280 281 6.556116 GGAGTAATGGGTGGAGGTATTAGTAA 59.444 42.308 0.00 0.00 0.00 2.24
281 282 7.370905 AGTAATGGGTGGAGGTATTAGTAAC 57.629 40.000 0.00 0.00 0.00 2.50
282 283 4.950205 ATGGGTGGAGGTATTAGTAACG 57.050 45.455 0.00 0.00 0.00 3.18
283 284 3.979911 TGGGTGGAGGTATTAGTAACGA 58.020 45.455 0.00 0.00 0.00 3.85
284 285 3.701040 TGGGTGGAGGTATTAGTAACGAC 59.299 47.826 0.00 0.00 0.00 4.34
285 286 3.068732 GGGTGGAGGTATTAGTAACGACC 59.931 52.174 7.47 7.47 0.00 4.79
286 287 3.068732 GGTGGAGGTATTAGTAACGACCC 59.931 52.174 10.80 4.78 31.93 4.46
287 288 3.701040 GTGGAGGTATTAGTAACGACCCA 59.299 47.826 10.80 2.82 31.93 4.51
288 289 4.343239 GTGGAGGTATTAGTAACGACCCAT 59.657 45.833 10.80 0.00 31.93 4.00
289 290 4.964262 TGGAGGTATTAGTAACGACCCATT 59.036 41.667 10.80 0.00 31.93 3.16
290 291 6.040842 GTGGAGGTATTAGTAACGACCCATTA 59.959 42.308 10.80 0.00 31.93 1.90
291 292 6.266103 TGGAGGTATTAGTAACGACCCATTAG 59.734 42.308 10.80 0.00 31.93 1.73
292 293 6.266330 GGAGGTATTAGTAACGACCCATTAGT 59.734 42.308 10.80 0.00 31.93 2.24
293 294 7.282332 AGGTATTAGTAACGACCCATTAGTC 57.718 40.000 10.80 0.00 31.93 2.59
294 295 6.266330 AGGTATTAGTAACGACCCATTAGTCC 59.734 42.308 10.80 0.00 32.91 3.85
295 296 5.541953 ATTAGTAACGACCCATTAGTCCC 57.458 43.478 0.00 0.00 32.91 4.46
296 297 1.753073 AGTAACGACCCATTAGTCCCG 59.247 52.381 0.00 0.00 32.91 5.14
297 298 1.113788 TAACGACCCATTAGTCCCGG 58.886 55.000 0.00 0.00 32.91 5.73
298 299 0.906282 AACGACCCATTAGTCCCGGT 60.906 55.000 0.00 0.00 32.91 5.28
299 300 0.906282 ACGACCCATTAGTCCCGGTT 60.906 55.000 0.00 0.00 32.91 4.44
300 301 0.179092 CGACCCATTAGTCCCGGTTC 60.179 60.000 0.00 0.00 32.91 3.62
301 302 0.906775 GACCCATTAGTCCCGGTTCA 59.093 55.000 0.00 0.00 0.00 3.18
302 303 1.489230 GACCCATTAGTCCCGGTTCAT 59.511 52.381 0.00 0.00 0.00 2.57
303 304 1.211949 ACCCATTAGTCCCGGTTCATG 59.788 52.381 0.00 0.00 0.00 3.07
304 305 1.488812 CCCATTAGTCCCGGTTCATGA 59.511 52.381 0.00 0.00 0.00 3.07
305 306 2.092646 CCCATTAGTCCCGGTTCATGAA 60.093 50.000 3.38 3.38 0.00 2.57
306 307 2.943033 CCATTAGTCCCGGTTCATGAAC 59.057 50.000 27.16 27.16 40.45 3.18
318 319 3.007635 GTTCATGAACCGGGACTAAAGG 58.992 50.000 25.26 0.00 35.36 3.11
319 320 1.065709 TCATGAACCGGGACTAAAGGC 60.066 52.381 6.32 0.00 0.00 4.35
320 321 0.255033 ATGAACCGGGACTAAAGGCC 59.745 55.000 6.32 0.00 0.00 5.19
321 322 1.077930 GAACCGGGACTAAAGGCCC 60.078 63.158 11.29 11.29 41.11 5.80
322 323 1.540617 AACCGGGACTAAAGGCCCT 60.541 57.895 18.97 0.00 42.40 5.19
323 324 1.138228 AACCGGGACTAAAGGCCCTT 61.138 55.000 18.97 4.45 42.40 3.95
324 325 0.252835 ACCGGGACTAAAGGCCCTTA 60.253 55.000 18.97 0.00 42.40 2.69
325 326 0.179702 CCGGGACTAAAGGCCCTTAC 59.820 60.000 18.97 0.00 42.40 2.34
326 327 0.179092 CGGGACTAAAGGCCCTTACG 60.179 60.000 18.97 1.56 42.40 3.18
327 328 1.197812 GGGACTAAAGGCCCTTACGA 58.802 55.000 14.19 0.00 41.31 3.43
328 329 1.556451 GGGACTAAAGGCCCTTACGAA 59.444 52.381 14.19 0.00 41.31 3.85
329 330 2.625737 GGACTAAAGGCCCTTACGAAC 58.374 52.381 0.00 0.00 0.00 3.95
330 331 2.625737 GACTAAAGGCCCTTACGAACC 58.374 52.381 0.00 0.00 0.00 3.62
331 332 1.066645 ACTAAAGGCCCTTACGAACCG 60.067 52.381 0.00 0.00 0.00 4.44
332 333 0.249955 TAAAGGCCCTTACGAACCGG 59.750 55.000 0.00 0.00 0.00 5.28
333 334 2.473891 AAAGGCCCTTACGAACCGGG 62.474 60.000 6.32 0.00 41.06 5.73
334 335 3.393106 GGCCCTTACGAACCGGGA 61.393 66.667 6.32 0.00 40.55 5.14
335 336 2.125391 GCCCTTACGAACCGGGAC 60.125 66.667 6.32 0.00 40.55 4.46
336 337 2.653087 GCCCTTACGAACCGGGACT 61.653 63.158 6.32 0.00 40.55 3.85
337 338 1.322538 GCCCTTACGAACCGGGACTA 61.323 60.000 6.32 0.00 40.55 2.59
338 339 1.185315 CCCTTACGAACCGGGACTAA 58.815 55.000 6.32 0.00 40.55 2.24
339 340 1.758862 CCCTTACGAACCGGGACTAAT 59.241 52.381 6.32 0.00 40.55 1.73
340 341 2.482490 CCCTTACGAACCGGGACTAATG 60.482 54.545 6.32 0.00 40.55 1.90
341 342 2.167075 CCTTACGAACCGGGACTAATGT 59.833 50.000 6.32 0.00 0.00 2.71
342 343 2.945447 TACGAACCGGGACTAATGTG 57.055 50.000 6.32 0.00 0.00 3.21
343 344 0.971386 ACGAACCGGGACTAATGTGT 59.029 50.000 6.32 0.00 0.00 3.72
344 345 1.337447 ACGAACCGGGACTAATGTGTG 60.337 52.381 6.32 0.00 0.00 3.82
345 346 1.734163 GAACCGGGACTAATGTGTGG 58.266 55.000 6.32 0.00 0.00 4.17
346 347 1.002773 GAACCGGGACTAATGTGTGGT 59.997 52.381 6.32 0.00 0.00 4.16
347 348 1.061546 ACCGGGACTAATGTGTGGTT 58.938 50.000 6.32 0.00 0.00 3.67
348 349 1.422402 ACCGGGACTAATGTGTGGTTT 59.578 47.619 6.32 0.00 0.00 3.27
349 350 2.158579 ACCGGGACTAATGTGTGGTTTT 60.159 45.455 6.32 0.00 0.00 2.43
350 351 2.486592 CCGGGACTAATGTGTGGTTTTC 59.513 50.000 0.00 0.00 0.00 2.29
351 352 3.408634 CGGGACTAATGTGTGGTTTTCT 58.591 45.455 0.00 0.00 0.00 2.52
352 353 4.563993 CCGGGACTAATGTGTGGTTTTCTA 60.564 45.833 0.00 0.00 0.00 2.10
353 354 4.390909 CGGGACTAATGTGTGGTTTTCTAC 59.609 45.833 0.00 0.00 0.00 2.59
354 355 5.557866 GGGACTAATGTGTGGTTTTCTACT 58.442 41.667 0.00 0.00 32.36 2.57
355 356 6.572898 CGGGACTAATGTGTGGTTTTCTACTA 60.573 42.308 0.00 0.00 32.36 1.82
356 357 6.817140 GGGACTAATGTGTGGTTTTCTACTAG 59.183 42.308 0.00 0.00 32.36 2.57
357 358 7.384477 GGACTAATGTGTGGTTTTCTACTAGT 58.616 38.462 0.00 0.00 32.36 2.57
368 369 5.699458 GGTTTTCTACTAGTGCAAGTTGCTA 59.301 40.000 27.17 12.34 45.31 3.49
391 392 1.386533 GCACACTGCTCTATGCCATT 58.613 50.000 0.00 0.00 40.96 3.16
392 393 1.065102 GCACACTGCTCTATGCCATTG 59.935 52.381 0.00 0.00 40.96 2.82
394 395 0.666913 CACTGCTCTATGCCATTGCC 59.333 55.000 0.00 0.00 42.00 4.52
395 396 0.256752 ACTGCTCTATGCCATTGCCA 59.743 50.000 0.00 0.00 42.00 4.92
396 397 0.952280 CTGCTCTATGCCATTGCCAG 59.048 55.000 0.00 0.00 42.00 4.85
397 398 0.256752 TGCTCTATGCCATTGCCAGT 59.743 50.000 0.00 0.00 42.00 4.00
433 434 0.039527 TCGACATGCCGATATGACCG 60.040 55.000 0.00 8.25 33.14 4.79
503 509 3.056465 TGTGTGATGGCGACTGTACATAA 60.056 43.478 0.00 0.00 0.00 1.90
527 537 0.370273 GTCCAACGCGCTAACTCATG 59.630 55.000 5.73 0.00 0.00 3.07
574 926 2.030007 AGAACATGCACGAATTTGGGTG 60.030 45.455 0.00 0.00 37.22 4.61
647 1012 8.472683 TTTTGTGTTCTAAAAACAAGTGATGG 57.527 30.769 0.00 0.00 35.39 3.51
650 1015 7.254852 TGTGTTCTAAAAACAAGTGATGGTTC 58.745 34.615 0.00 0.00 38.24 3.62
677 2779 1.203300 AGGCAAAAAGGGTAAGGGCAT 60.203 47.619 0.00 0.00 0.00 4.40
710 3002 7.049754 TCAGATCAGCATAGCTTTGATGTTTA 58.950 34.615 19.58 3.88 36.40 2.01
796 3108 3.502211 CCCACTACAAATTCTTCTGCGTT 59.498 43.478 0.00 0.00 0.00 4.84
836 3170 5.348164 TGTTTCTTTTTCTTAGCCAGCAAC 58.652 37.500 0.00 0.00 0.00 4.17
851 3185 7.408756 AGCCAGCAACAAAATATCTGATTTA 57.591 32.000 0.00 0.00 0.00 1.40
852 3186 7.839907 AGCCAGCAACAAAATATCTGATTTAA 58.160 30.769 0.00 0.00 0.00 1.52
853 3187 8.313292 AGCCAGCAACAAAATATCTGATTTAAA 58.687 29.630 0.00 0.00 0.00 1.52
854 3188 8.934825 GCCAGCAACAAAATATCTGATTTAAAA 58.065 29.630 0.00 0.00 0.00 1.52
941 6485 3.900601 AGTATCCTTGCTCGAGAATCCAT 59.099 43.478 18.75 4.27 0.00 3.41
1036 6612 2.527624 TCCCAGAGGCAGCACTGT 60.528 61.111 14.80 0.00 32.93 3.55
1093 6669 3.639541 CTCCTTCTCGCGCTGCTGT 62.640 63.158 5.56 0.00 0.00 4.40
1273 6891 2.913463 CAGAGGGCTGGATCAGTCT 58.087 57.895 0.00 0.00 36.22 3.24
1282 6906 0.251608 TGGATCAGTCTGTCCCGACA 60.252 55.000 14.96 0.00 39.32 4.35
1331 6958 2.283173 GGTGGTTCCTGCCTTGGG 60.283 66.667 0.00 0.00 0.00 4.12
1507 7159 2.915659 AGGTCGACTTGGACGGCA 60.916 61.111 16.46 0.00 37.82 5.69
1729 7404 4.922103 CCACTTTCTAACCTCTGTTCGTAC 59.078 45.833 0.00 0.00 35.87 3.67
1794 7469 7.841956 ACATAATCTGTGCTGTTACTAGTCTT 58.158 34.615 0.00 0.00 36.48 3.01
1831 7507 0.671472 GGAGGCAAAAGCCAACATGC 60.671 55.000 9.42 0.00 38.06 4.06
1834 7510 1.010419 GGCAAAAGCCAACATGCGAG 61.010 55.000 0.84 0.00 39.66 5.03
1860 7537 5.473846 GGCCTAGTTTTCTTTAGACTTTGCT 59.526 40.000 0.00 0.00 0.00 3.91
1861 7538 6.016192 GGCCTAGTTTTCTTTAGACTTTGCTT 60.016 38.462 0.00 0.00 0.00 3.91
1862 7539 7.078851 GCCTAGTTTTCTTTAGACTTTGCTTC 58.921 38.462 0.00 0.00 0.00 3.86
1863 7540 7.041030 GCCTAGTTTTCTTTAGACTTTGCTTCT 60.041 37.037 0.00 0.00 0.00 2.85
1864 7541 8.841300 CCTAGTTTTCTTTAGACTTTGCTTCTT 58.159 33.333 0.00 0.00 0.00 2.52
1865 7542 9.871299 CTAGTTTTCTTTAGACTTTGCTTCTTC 57.129 33.333 0.00 0.00 0.00 2.87
1866 7543 8.512966 AGTTTTCTTTAGACTTTGCTTCTTCT 57.487 30.769 0.00 0.00 0.00 2.85
1867 7544 8.961634 AGTTTTCTTTAGACTTTGCTTCTTCTT 58.038 29.630 0.00 0.00 0.00 2.52
1868 7545 9.574458 GTTTTCTTTAGACTTTGCTTCTTCTTT 57.426 29.630 0.00 0.00 0.00 2.52
1891 7568 6.385649 TTTTTCGCAGGTGATTTAGACTTT 57.614 33.333 0.00 0.00 0.00 2.66
1892 7569 5.356882 TTTCGCAGGTGATTTAGACTTTG 57.643 39.130 0.00 0.00 0.00 2.77
1893 7570 2.742053 TCGCAGGTGATTTAGACTTTGC 59.258 45.455 0.00 0.00 0.00 3.68
2027 9491 7.272144 ACCTCTGTTCATAACCTTAGGATTT 57.728 36.000 4.77 0.00 31.62 2.17
2028 9492 7.699878 ACCTCTGTTCATAACCTTAGGATTTT 58.300 34.615 4.77 0.00 31.62 1.82
2029 9493 7.829706 ACCTCTGTTCATAACCTTAGGATTTTC 59.170 37.037 4.77 0.00 31.62 2.29
2030 9494 8.049721 CCTCTGTTCATAACCTTAGGATTTTCT 58.950 37.037 4.77 0.00 0.00 2.52
2031 9495 9.103861 CTCTGTTCATAACCTTAGGATTTTCTC 57.896 37.037 4.77 0.00 0.00 2.87
2032 9496 8.826765 TCTGTTCATAACCTTAGGATTTTCTCT 58.173 33.333 4.77 0.00 0.00 3.10
2033 9497 9.103861 CTGTTCATAACCTTAGGATTTTCTCTC 57.896 37.037 4.77 0.00 0.00 3.20
2060 9524 6.399639 TTTTTGCGAAAGAACCTTAGGATT 57.600 33.333 4.77 0.00 0.00 3.01
2088 9606 5.048713 GGTGTGTCTAGGTTTCTGAAATTGG 60.049 44.000 6.06 1.05 0.00 3.16
2246 9791 0.805711 CGTACATGATGCGTCAGCCA 60.806 55.000 15.04 0.00 44.33 4.75
2304 9852 0.975556 TGTAGCCGAGAAGGATGCCA 60.976 55.000 0.00 0.00 40.47 4.92
2307 9855 1.377202 GCCGAGAAGGATGCCAACA 60.377 57.895 0.00 0.00 45.00 3.33
2450 10003 6.995511 TGCAACTCATACCAATACCTAAAC 57.004 37.500 0.00 0.00 0.00 2.01
2460 10013 6.267496 ACCAATACCTAAACATTTGAGCAC 57.733 37.500 0.00 0.00 0.00 4.40
2517 10071 1.677217 GCAATGGCTTCGACCTCTTCT 60.677 52.381 0.00 0.00 36.96 2.85
2518 10072 2.005451 CAATGGCTTCGACCTCTTCTG 58.995 52.381 0.00 0.00 0.00 3.02
2520 10074 1.807573 GGCTTCGACCTCTTCTGCG 60.808 63.158 0.00 0.00 0.00 5.18
2521 10075 1.807573 GCTTCGACCTCTTCTGCGG 60.808 63.158 0.00 0.00 0.00 5.69
2544 10098 1.373497 CTTCTTGGCAGCGTCGTCT 60.373 57.895 0.00 0.00 0.00 4.18
2558 10112 1.811266 CGTCTTCAGCCATGGGTCG 60.811 63.158 15.07 10.64 0.00 4.79
2560 10114 1.021390 GTCTTCAGCCATGGGTCGTG 61.021 60.000 15.07 3.08 0.00 4.35
2580 10134 1.457346 GTCGGGGAAGTAGTCGAAGA 58.543 55.000 0.00 0.00 33.33 2.87
2581 10135 1.815003 GTCGGGGAAGTAGTCGAAGAA 59.185 52.381 0.00 0.00 39.69 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 9.046296 GTGTTTCATATATTGTGTTAGCTAGCT 57.954 33.333 23.12 23.12 0.00 3.32
16 17 8.283291 GGTGTTTCATATATTGTGTTAGCTAGC 58.717 37.037 6.62 6.62 0.00 3.42
17 18 9.547753 AGGTGTTTCATATATTGTGTTAGCTAG 57.452 33.333 0.00 0.00 0.00 3.42
19 20 9.899661 TTAGGTGTTTCATATATTGTGTTAGCT 57.100 29.630 0.00 0.00 0.00 3.32
33 34 8.764558 GGGGGTTAATTTAATTAGGTGTTTCAT 58.235 33.333 0.00 0.00 0.00 2.57
34 35 8.136563 GGGGGTTAATTTAATTAGGTGTTTCA 57.863 34.615 0.00 0.00 0.00 2.69
56 57 0.541998 GAGGTTGGGAGTTTTGGGGG 60.542 60.000 0.00 0.00 0.00 5.40
57 58 0.541998 GGAGGTTGGGAGTTTTGGGG 60.542 60.000 0.00 0.00 0.00 4.96
58 59 0.541998 GGGAGGTTGGGAGTTTTGGG 60.542 60.000 0.00 0.00 0.00 4.12
59 60 0.541998 GGGGAGGTTGGGAGTTTTGG 60.542 60.000 0.00 0.00 0.00 3.28
60 61 0.482887 AGGGGAGGTTGGGAGTTTTG 59.517 55.000 0.00 0.00 0.00 2.44
61 62 0.778083 GAGGGGAGGTTGGGAGTTTT 59.222 55.000 0.00 0.00 0.00 2.43
62 63 1.140772 GGAGGGGAGGTTGGGAGTTT 61.141 60.000 0.00 0.00 0.00 2.66
63 64 1.541620 GGAGGGGAGGTTGGGAGTT 60.542 63.158 0.00 0.00 0.00 3.01
64 65 2.062448 AAGGAGGGGAGGTTGGGAGT 62.062 60.000 0.00 0.00 0.00 3.85
65 66 0.846870 AAAGGAGGGGAGGTTGGGAG 60.847 60.000 0.00 0.00 0.00 4.30
66 67 0.845102 GAAAGGAGGGGAGGTTGGGA 60.845 60.000 0.00 0.00 0.00 4.37
67 68 1.140134 TGAAAGGAGGGGAGGTTGGG 61.140 60.000 0.00 0.00 0.00 4.12
68 69 0.777446 TTGAAAGGAGGGGAGGTTGG 59.223 55.000 0.00 0.00 0.00 3.77
69 70 2.675658 TTTGAAAGGAGGGGAGGTTG 57.324 50.000 0.00 0.00 0.00 3.77
70 71 3.699025 TTTTTGAAAGGAGGGGAGGTT 57.301 42.857 0.00 0.00 0.00 3.50
89 90 5.588246 CAGTTGCTGGGGTTTTTGTATTTTT 59.412 36.000 0.00 0.00 0.00 1.94
90 91 5.122519 CAGTTGCTGGGGTTTTTGTATTTT 58.877 37.500 0.00 0.00 0.00 1.82
91 92 4.702831 CAGTTGCTGGGGTTTTTGTATTT 58.297 39.130 0.00 0.00 0.00 1.40
92 93 4.335400 CAGTTGCTGGGGTTTTTGTATT 57.665 40.909 0.00 0.00 0.00 1.89
107 108 1.154150 GCGTCAGCATTCCAGTTGC 60.154 57.895 0.00 0.00 44.35 4.17
108 109 1.133253 CGCGTCAGCATTCCAGTTG 59.867 57.895 0.00 0.00 45.49 3.16
109 110 1.301716 ACGCGTCAGCATTCCAGTT 60.302 52.632 5.58 0.00 45.49 3.16
110 111 2.029288 CACGCGTCAGCATTCCAGT 61.029 57.895 9.86 0.00 45.49 4.00
111 112 2.743752 CCACGCGTCAGCATTCCAG 61.744 63.158 9.86 0.00 45.49 3.86
112 113 2.520465 ATCCACGCGTCAGCATTCCA 62.520 55.000 9.86 0.00 45.49 3.53
113 114 1.815421 ATCCACGCGTCAGCATTCC 60.815 57.895 9.86 0.00 45.49 3.01
114 115 1.349627 CATCCACGCGTCAGCATTC 59.650 57.895 9.86 0.00 45.49 2.67
115 116 2.753966 GCATCCACGCGTCAGCATT 61.754 57.895 9.86 0.00 45.49 3.56
116 117 3.197790 GCATCCACGCGTCAGCAT 61.198 61.111 9.86 0.00 45.49 3.79
117 118 3.956305 ATGCATCCACGCGTCAGCA 62.956 57.895 21.35 21.35 45.49 4.41
118 119 2.257286 AAATGCATCCACGCGTCAGC 62.257 55.000 9.86 11.90 40.74 4.26
119 120 0.168788 AAAATGCATCCACGCGTCAG 59.831 50.000 9.86 3.57 33.35 3.51
120 121 0.109827 CAAAATGCATCCACGCGTCA 60.110 50.000 9.86 3.90 33.35 4.35
121 122 0.798009 CCAAAATGCATCCACGCGTC 60.798 55.000 9.86 0.00 33.35 5.19
122 123 1.212490 CCAAAATGCATCCACGCGT 59.788 52.632 5.58 5.58 33.35 6.01
123 124 0.798009 GACCAAAATGCATCCACGCG 60.798 55.000 3.53 3.53 33.35 6.01
124 125 0.458370 GGACCAAAATGCATCCACGC 60.458 55.000 0.00 0.00 0.00 5.34
125 126 0.173255 GGGACCAAAATGCATCCACG 59.827 55.000 0.00 0.00 32.45 4.94
126 127 0.173255 CGGGACCAAAATGCATCCAC 59.827 55.000 0.00 0.00 32.45 4.02
127 128 0.969917 CCGGGACCAAAATGCATCCA 60.970 55.000 0.00 0.00 32.45 3.41
128 129 0.970427 ACCGGGACCAAAATGCATCC 60.970 55.000 6.32 0.00 0.00 3.51
129 130 0.894835 AACCGGGACCAAAATGCATC 59.105 50.000 6.32 0.00 0.00 3.91
130 131 0.607620 CAACCGGGACCAAAATGCAT 59.392 50.000 6.32 0.00 0.00 3.96
131 132 1.467678 CCAACCGGGACCAAAATGCA 61.468 55.000 6.32 0.00 40.01 3.96
132 133 1.291906 CCAACCGGGACCAAAATGC 59.708 57.895 6.32 0.00 40.01 3.56
133 134 0.316841 CACCAACCGGGACCAAAATG 59.683 55.000 6.32 0.00 41.15 2.32
134 135 0.830023 CCACCAACCGGGACCAAAAT 60.830 55.000 6.32 0.00 41.15 1.82
135 136 1.455959 CCACCAACCGGGACCAAAA 60.456 57.895 6.32 0.00 41.15 2.44
136 137 2.196229 CCACCAACCGGGACCAAA 59.804 61.111 6.32 0.00 41.15 3.28
137 138 4.589675 GCCACCAACCGGGACCAA 62.590 66.667 6.32 0.00 41.15 3.67
167 168 4.589675 TTGGTCCCGGTTGGTGGC 62.590 66.667 0.00 0.00 34.77 5.01
168 169 1.901464 CTTTGGTCCCGGTTGGTGG 60.901 63.158 0.00 0.00 34.77 4.61
169 170 1.901464 CCTTTGGTCCCGGTTGGTG 60.901 63.158 0.00 0.00 34.77 4.17
170 171 2.518933 CCTTTGGTCCCGGTTGGT 59.481 61.111 0.00 0.00 34.77 3.67
171 172 2.989253 GCCTTTGGTCCCGGTTGG 60.989 66.667 0.00 0.00 0.00 3.77
172 173 2.989253 GGCCTTTGGTCCCGGTTG 60.989 66.667 0.00 0.00 0.00 3.77
173 174 4.295199 GGGCCTTTGGTCCCGGTT 62.295 66.667 0.84 0.00 42.67 4.44
179 180 2.035783 GTCAGGGGGCCTTTGGTC 59.964 66.667 0.84 0.00 0.00 4.02
180 181 2.452491 AGTCAGGGGGCCTTTGGT 60.452 61.111 0.84 0.00 0.00 3.67
181 182 2.036256 CAGTCAGGGGGCCTTTGG 59.964 66.667 0.84 0.00 0.00 3.28
182 183 2.036256 CCAGTCAGGGGGCCTTTG 59.964 66.667 0.84 2.08 0.00 2.77
206 207 4.662961 TCCACGTGGCTCTGTGCG 62.663 66.667 30.25 2.78 44.05 5.34
207 208 2.740055 CTCCACGTGGCTCTGTGC 60.740 66.667 30.25 0.00 41.94 4.57
208 209 2.047844 CCTCCACGTGGCTCTGTG 60.048 66.667 30.25 13.78 35.87 3.66
209 210 4.008933 GCCTCCACGTGGCTCTGT 62.009 66.667 30.25 0.00 46.38 3.41
215 216 2.334946 CCAATGTGCCTCCACGTGG 61.335 63.158 29.26 29.26 45.04 4.94
216 217 1.577328 GACCAATGTGCCTCCACGTG 61.577 60.000 9.08 9.08 45.04 4.49
217 218 1.302511 GACCAATGTGCCTCCACGT 60.303 57.895 0.00 0.00 45.04 4.49
218 219 2.040544 GGACCAATGTGCCTCCACG 61.041 63.158 0.00 0.00 45.04 4.94
219 220 4.002797 GGACCAATGTGCCTCCAC 57.997 61.111 0.00 0.00 42.40 4.02
225 226 1.303317 AGAACCGGGACCAATGTGC 60.303 57.895 6.32 0.00 0.00 4.57
226 227 0.960364 CCAGAACCGGGACCAATGTG 60.960 60.000 6.32 0.00 0.00 3.21
227 228 1.131303 TCCAGAACCGGGACCAATGT 61.131 55.000 6.32 0.00 0.00 2.71
228 229 0.255890 ATCCAGAACCGGGACCAATG 59.744 55.000 6.32 0.00 37.23 2.82
229 230 0.999712 AATCCAGAACCGGGACCAAT 59.000 50.000 6.32 0.00 37.23 3.16
230 231 0.037590 CAATCCAGAACCGGGACCAA 59.962 55.000 6.32 0.00 37.23 3.67
231 232 0.838554 TCAATCCAGAACCGGGACCA 60.839 55.000 6.32 0.00 37.23 4.02
232 233 0.326927 TTCAATCCAGAACCGGGACC 59.673 55.000 6.32 0.00 37.23 4.46
233 234 1.450025 GTTCAATCCAGAACCGGGAC 58.550 55.000 6.32 0.00 41.52 4.46
234 235 3.948735 GTTCAATCCAGAACCGGGA 57.051 52.632 6.32 0.00 41.52 5.14
239 240 1.003233 ACTCCCGGTTCAATCCAGAAC 59.997 52.381 0.00 0.00 45.50 3.01
240 241 1.358152 ACTCCCGGTTCAATCCAGAA 58.642 50.000 0.00 0.00 0.00 3.02
241 242 2.241281 TACTCCCGGTTCAATCCAGA 57.759 50.000 0.00 0.00 0.00 3.86
242 243 3.206150 CATTACTCCCGGTTCAATCCAG 58.794 50.000 0.00 0.00 0.00 3.86
243 244 2.092646 CCATTACTCCCGGTTCAATCCA 60.093 50.000 0.00 0.00 0.00 3.41
244 245 2.572290 CCATTACTCCCGGTTCAATCC 58.428 52.381 0.00 0.00 0.00 3.01
245 246 2.092592 ACCCATTACTCCCGGTTCAATC 60.093 50.000 0.00 0.00 0.00 2.67
246 247 1.920351 ACCCATTACTCCCGGTTCAAT 59.080 47.619 0.00 0.00 0.00 2.57
247 248 1.003812 CACCCATTACTCCCGGTTCAA 59.996 52.381 0.00 0.00 0.00 2.69
248 249 0.616371 CACCCATTACTCCCGGTTCA 59.384 55.000 0.00 0.00 0.00 3.18
249 250 0.107361 CCACCCATTACTCCCGGTTC 60.107 60.000 0.00 0.00 0.00 3.62
250 251 0.548197 TCCACCCATTACTCCCGGTT 60.548 55.000 0.00 0.00 0.00 4.44
251 252 0.981277 CTCCACCCATTACTCCCGGT 60.981 60.000 0.00 0.00 0.00 5.28
252 253 1.696097 CCTCCACCCATTACTCCCGG 61.696 65.000 0.00 0.00 0.00 5.73
253 254 0.981277 ACCTCCACCCATTACTCCCG 60.981 60.000 0.00 0.00 0.00 5.14
254 255 2.185663 TACCTCCACCCATTACTCCC 57.814 55.000 0.00 0.00 0.00 4.30
255 256 4.906060 ACTAATACCTCCACCCATTACTCC 59.094 45.833 0.00 0.00 0.00 3.85
256 257 7.440198 GTTACTAATACCTCCACCCATTACTC 58.560 42.308 0.00 0.00 0.00 2.59
257 258 6.041296 CGTTACTAATACCTCCACCCATTACT 59.959 42.308 0.00 0.00 0.00 2.24
258 259 6.040842 TCGTTACTAATACCTCCACCCATTAC 59.959 42.308 0.00 0.00 0.00 1.89
259 260 6.040842 GTCGTTACTAATACCTCCACCCATTA 59.959 42.308 0.00 0.00 0.00 1.90
260 261 4.964262 TCGTTACTAATACCTCCACCCATT 59.036 41.667 0.00 0.00 0.00 3.16
261 262 4.343239 GTCGTTACTAATACCTCCACCCAT 59.657 45.833 0.00 0.00 0.00 4.00
262 263 3.701040 GTCGTTACTAATACCTCCACCCA 59.299 47.826 0.00 0.00 0.00 4.51
263 264 3.068732 GGTCGTTACTAATACCTCCACCC 59.931 52.174 0.00 0.00 0.00 4.61
264 265 3.068732 GGGTCGTTACTAATACCTCCACC 59.931 52.174 0.00 0.00 32.38 4.61
265 266 3.701040 TGGGTCGTTACTAATACCTCCAC 59.299 47.826 0.00 0.00 32.38 4.02
266 267 3.979911 TGGGTCGTTACTAATACCTCCA 58.020 45.455 0.00 0.00 32.38 3.86
267 268 5.541953 AATGGGTCGTTACTAATACCTCC 57.458 43.478 0.00 0.00 32.38 4.30
268 269 7.282332 ACTAATGGGTCGTTACTAATACCTC 57.718 40.000 0.00 0.00 32.38 3.85
269 270 6.266330 GGACTAATGGGTCGTTACTAATACCT 59.734 42.308 0.00 0.00 37.12 3.08
270 271 6.450545 GGACTAATGGGTCGTTACTAATACC 58.549 44.000 0.00 0.00 37.12 2.73
271 272 6.450545 GGGACTAATGGGTCGTTACTAATAC 58.549 44.000 0.00 0.00 37.12 1.89
272 273 5.241506 CGGGACTAATGGGTCGTTACTAATA 59.758 44.000 0.00 0.00 37.12 0.98
273 274 4.038402 CGGGACTAATGGGTCGTTACTAAT 59.962 45.833 0.00 0.00 37.12 1.73
274 275 3.381272 CGGGACTAATGGGTCGTTACTAA 59.619 47.826 0.00 0.00 37.12 2.24
275 276 2.951642 CGGGACTAATGGGTCGTTACTA 59.048 50.000 0.00 0.00 37.12 1.82
276 277 1.753073 CGGGACTAATGGGTCGTTACT 59.247 52.381 0.00 0.00 37.12 2.24
277 278 1.202452 CCGGGACTAATGGGTCGTTAC 60.202 57.143 0.00 0.00 37.12 2.50
278 279 1.113788 CCGGGACTAATGGGTCGTTA 58.886 55.000 0.00 0.00 37.12 3.18
279 280 0.906282 ACCGGGACTAATGGGTCGTT 60.906 55.000 6.32 0.00 37.12 3.85
280 281 0.906282 AACCGGGACTAATGGGTCGT 60.906 55.000 6.32 0.00 37.12 4.34
281 282 0.179092 GAACCGGGACTAATGGGTCG 60.179 60.000 6.32 0.00 37.12 4.79
282 283 0.906775 TGAACCGGGACTAATGGGTC 59.093 55.000 6.32 0.00 40.01 4.46
283 284 1.211949 CATGAACCGGGACTAATGGGT 59.788 52.381 6.32 0.00 0.00 4.51
284 285 1.488812 TCATGAACCGGGACTAATGGG 59.511 52.381 6.32 0.00 0.00 4.00
285 286 2.943033 GTTCATGAACCGGGACTAATGG 59.057 50.000 25.26 0.00 35.36 3.16
297 298 3.007635 CCTTTAGTCCCGGTTCATGAAC 58.992 50.000 27.16 27.16 40.45 3.18
298 299 2.617021 GCCTTTAGTCCCGGTTCATGAA 60.617 50.000 3.38 3.38 0.00 2.57
299 300 1.065709 GCCTTTAGTCCCGGTTCATGA 60.066 52.381 0.00 0.00 0.00 3.07
300 301 1.379527 GCCTTTAGTCCCGGTTCATG 58.620 55.000 0.00 0.00 0.00 3.07
301 302 0.255033 GGCCTTTAGTCCCGGTTCAT 59.745 55.000 0.00 0.00 0.00 2.57
302 303 1.681076 GGCCTTTAGTCCCGGTTCA 59.319 57.895 0.00 0.00 0.00 3.18
303 304 1.077930 GGGCCTTTAGTCCCGGTTC 60.078 63.158 0.84 0.00 32.00 3.62
304 305 3.084304 GGGCCTTTAGTCCCGGTT 58.916 61.111 0.84 0.00 32.00 4.44
308 309 1.197812 TCGTAAGGGCCTTTAGTCCC 58.802 55.000 26.29 5.03 42.94 4.46
309 310 2.625737 GTTCGTAAGGGCCTTTAGTCC 58.374 52.381 26.29 6.64 38.47 3.85
310 311 2.625737 GGTTCGTAAGGGCCTTTAGTC 58.374 52.381 26.29 14.62 38.47 2.59
311 312 1.066645 CGGTTCGTAAGGGCCTTTAGT 60.067 52.381 26.29 1.50 38.47 2.24
312 313 1.648504 CGGTTCGTAAGGGCCTTTAG 58.351 55.000 26.29 18.30 38.47 1.85
313 314 0.249955 CCGGTTCGTAAGGGCCTTTA 59.750 55.000 26.29 2.60 38.47 1.85
314 315 1.002990 CCGGTTCGTAAGGGCCTTT 60.003 57.895 26.29 5.08 38.47 3.11
315 316 2.666812 CCGGTTCGTAAGGGCCTT 59.333 61.111 24.44 24.44 38.47 4.35
316 317 3.396570 CCCGGTTCGTAAGGGCCT 61.397 66.667 0.00 0.00 38.51 5.19
317 318 3.393106 TCCCGGTTCGTAAGGGCC 61.393 66.667 0.00 0.00 44.70 5.80
318 319 1.322538 TAGTCCCGGTTCGTAAGGGC 61.323 60.000 0.00 0.00 44.70 5.19
319 320 1.185315 TTAGTCCCGGTTCGTAAGGG 58.815 55.000 0.00 0.00 46.40 3.95
320 321 2.167075 ACATTAGTCCCGGTTCGTAAGG 59.833 50.000 0.00 0.00 38.47 2.69
321 322 3.184541 CACATTAGTCCCGGTTCGTAAG 58.815 50.000 0.00 0.00 0.00 2.34
322 323 2.562298 ACACATTAGTCCCGGTTCGTAA 59.438 45.455 0.00 0.00 0.00 3.18
323 324 2.094597 CACACATTAGTCCCGGTTCGTA 60.095 50.000 0.00 0.00 0.00 3.43
324 325 0.971386 ACACATTAGTCCCGGTTCGT 59.029 50.000 0.00 0.00 0.00 3.85
325 326 1.355971 CACACATTAGTCCCGGTTCG 58.644 55.000 0.00 0.00 0.00 3.95
326 327 1.002773 ACCACACATTAGTCCCGGTTC 59.997 52.381 0.00 0.00 0.00 3.62
327 328 1.061546 ACCACACATTAGTCCCGGTT 58.938 50.000 0.00 0.00 0.00 4.44
328 329 1.061546 AACCACACATTAGTCCCGGT 58.938 50.000 0.00 0.00 0.00 5.28
329 330 2.194201 AAACCACACATTAGTCCCGG 57.806 50.000 0.00 0.00 0.00 5.73
330 331 3.408634 AGAAAACCACACATTAGTCCCG 58.591 45.455 0.00 0.00 0.00 5.14
331 332 5.557866 AGTAGAAAACCACACATTAGTCCC 58.442 41.667 0.00 0.00 0.00 4.46
332 333 7.331193 CACTAGTAGAAAACCACACATTAGTCC 59.669 40.741 3.59 0.00 0.00 3.85
333 334 7.148623 GCACTAGTAGAAAACCACACATTAGTC 60.149 40.741 3.59 0.00 0.00 2.59
334 335 6.649557 GCACTAGTAGAAAACCACACATTAGT 59.350 38.462 3.59 0.00 0.00 2.24
335 336 6.649141 TGCACTAGTAGAAAACCACACATTAG 59.351 38.462 3.59 0.00 0.00 1.73
336 337 6.526526 TGCACTAGTAGAAAACCACACATTA 58.473 36.000 3.59 0.00 0.00 1.90
337 338 5.373222 TGCACTAGTAGAAAACCACACATT 58.627 37.500 3.59 0.00 0.00 2.71
338 339 4.968259 TGCACTAGTAGAAAACCACACAT 58.032 39.130 3.59 0.00 0.00 3.21
339 340 4.409718 TGCACTAGTAGAAAACCACACA 57.590 40.909 3.59 0.00 0.00 3.72
340 341 4.814771 ACTTGCACTAGTAGAAAACCACAC 59.185 41.667 3.59 0.00 0.00 3.82
341 342 5.031066 ACTTGCACTAGTAGAAAACCACA 57.969 39.130 3.59 0.00 0.00 4.17
342 343 5.748592 CAACTTGCACTAGTAGAAAACCAC 58.251 41.667 3.59 0.00 0.00 4.16
343 344 4.274950 GCAACTTGCACTAGTAGAAAACCA 59.725 41.667 8.97 0.00 44.26 3.67
344 345 4.784329 GCAACTTGCACTAGTAGAAAACC 58.216 43.478 8.97 0.00 44.26 3.27
379 380 1.396653 AACTGGCAATGGCATAGAGC 58.603 50.000 10.64 5.65 43.71 4.09
380 381 2.480759 GCAAACTGGCAATGGCATAGAG 60.481 50.000 10.64 0.62 43.71 2.43
381 382 1.477700 GCAAACTGGCAATGGCATAGA 59.522 47.619 10.64 0.00 43.71 1.98
385 386 2.742403 GGCAAACTGGCAATGGCA 59.258 55.556 9.67 9.67 43.14 4.92
392 393 2.137523 CAAGATTTGTGGCAAACTGGC 58.862 47.619 0.00 0.00 44.03 4.85
394 395 3.383761 GACCAAGATTTGTGGCAAACTG 58.616 45.455 0.00 0.00 40.02 3.16
395 396 2.034558 CGACCAAGATTTGTGGCAAACT 59.965 45.455 0.00 0.00 40.02 2.66
396 397 2.034053 TCGACCAAGATTTGTGGCAAAC 59.966 45.455 0.00 0.00 40.02 2.93
397 398 2.034053 GTCGACCAAGATTTGTGGCAAA 59.966 45.455 3.51 0.00 40.02 3.68
503 509 3.502990 TTAGCGCGTTGGACGGTGT 62.503 57.895 8.43 0.00 42.82 4.16
527 537 3.418619 CGCACGTAAATTAGATGCATTGC 59.581 43.478 0.00 0.46 36.02 3.56
574 926 1.620323 GCAATAAGGGATTCCATGCCC 59.380 52.381 4.80 0.00 42.53 5.36
621 986 8.930760 CCATCACTTGTTTTTAGAACACAAAAA 58.069 29.630 0.00 0.00 33.61 1.94
622 987 8.091449 ACCATCACTTGTTTTTAGAACACAAAA 58.909 29.630 0.00 0.00 30.15 2.44
623 988 7.607250 ACCATCACTTGTTTTTAGAACACAAA 58.393 30.769 0.00 0.00 30.15 2.83
624 989 7.164230 ACCATCACTTGTTTTTAGAACACAA 57.836 32.000 0.00 0.00 0.00 3.33
625 990 6.767524 ACCATCACTTGTTTTTAGAACACA 57.232 33.333 0.00 0.00 0.00 3.72
626 991 7.480810 AGAACCATCACTTGTTTTTAGAACAC 58.519 34.615 0.00 0.00 0.00 3.32
627 992 7.639113 AGAACCATCACTTGTTTTTAGAACA 57.361 32.000 0.00 0.00 0.00 3.18
628 993 8.926715 AAAGAACCATCACTTGTTTTTAGAAC 57.073 30.769 0.00 0.00 0.00 3.01
629 994 9.936759 AAAAAGAACCATCACTTGTTTTTAGAA 57.063 25.926 0.00 0.00 34.22 2.10
657 1049 0.189822 TGCCCTTACCCTTTTTGCCT 59.810 50.000 0.00 0.00 0.00 4.75
658 1050 1.066215 CATGCCCTTACCCTTTTTGCC 60.066 52.381 0.00 0.00 0.00 4.52
677 2779 3.802675 GCTATGCTGATCTGATCACTGCA 60.803 47.826 26.62 26.62 42.29 4.41
796 3108 6.286240 AGAAACATATCTGTCACTGCACTA 57.714 37.500 0.00 0.00 33.36 2.74
905 6439 3.083122 GGATACTATCGGTCTAGCCCA 57.917 52.381 0.00 0.00 0.00 5.36
941 6485 3.119245 GCGAGTGGTTCAGGTCTATTGTA 60.119 47.826 0.00 0.00 0.00 2.41
1025 6601 2.121992 CTGGGAGAACAGTGCTGCCT 62.122 60.000 19.69 0.00 43.50 4.75
1036 6612 3.170362 CTTGGCCACCTGGGAGAA 58.830 61.111 3.88 0.00 40.01 2.87
1093 6669 4.033776 CCTGAGGAAGGCGGGCAA 62.034 66.667 3.78 0.00 39.93 4.52
1273 6891 1.004320 CCATTCGGTTGTCGGGACA 60.004 57.895 0.00 0.00 39.98 4.02
1331 6958 8.462811 TGATCTTCAGCTCGATTATATTACTCC 58.537 37.037 0.00 0.00 0.00 3.85
1729 7404 3.372822 ACACACCGCAAATATCCTAAACG 59.627 43.478 0.00 0.00 0.00 3.60
1794 7469 3.306088 CCTCCAGCGTTCACTTTCTTCTA 60.306 47.826 0.00 0.00 0.00 2.10
1831 7507 2.491675 AAAGAAAACTAGGCCCCTCG 57.508 50.000 0.00 0.00 0.00 4.63
1834 7510 4.571369 AGTCTAAAGAAAACTAGGCCCC 57.429 45.455 0.00 0.00 0.00 5.80
1838 7514 8.384607 AGAAGCAAAGTCTAAAGAAAACTAGG 57.615 34.615 0.00 0.00 0.00 3.02
1868 7545 6.205784 CAAAGTCTAAATCACCTGCGAAAAA 58.794 36.000 0.00 0.00 0.00 1.94
1869 7546 5.757886 CAAAGTCTAAATCACCTGCGAAAA 58.242 37.500 0.00 0.00 0.00 2.29
1870 7547 4.320202 GCAAAGTCTAAATCACCTGCGAAA 60.320 41.667 0.00 0.00 0.00 3.46
1871 7548 3.188460 GCAAAGTCTAAATCACCTGCGAA 59.812 43.478 0.00 0.00 0.00 4.70
1872 7549 2.742053 GCAAAGTCTAAATCACCTGCGA 59.258 45.455 0.00 0.00 0.00 5.10
1873 7550 2.744202 AGCAAAGTCTAAATCACCTGCG 59.256 45.455 0.00 0.00 33.83 5.18
1874 7551 4.457257 AGAAGCAAAGTCTAAATCACCTGC 59.543 41.667 0.00 0.00 0.00 4.85
1875 7552 6.205464 TGAAGAAGCAAAGTCTAAATCACCTG 59.795 38.462 0.00 0.00 0.00 4.00
1876 7553 6.299141 TGAAGAAGCAAAGTCTAAATCACCT 58.701 36.000 0.00 0.00 0.00 4.00
1877 7554 6.428159 TCTGAAGAAGCAAAGTCTAAATCACC 59.572 38.462 0.00 0.00 0.00 4.02
1878 7555 7.172361 AGTCTGAAGAAGCAAAGTCTAAATCAC 59.828 37.037 0.00 0.00 0.00 3.06
1879 7556 7.172190 CAGTCTGAAGAAGCAAAGTCTAAATCA 59.828 37.037 0.00 0.00 0.00 2.57
1880 7557 7.172361 ACAGTCTGAAGAAGCAAAGTCTAAATC 59.828 37.037 6.91 0.00 0.00 2.17
1881 7558 6.995091 ACAGTCTGAAGAAGCAAAGTCTAAAT 59.005 34.615 6.91 0.00 0.00 1.40
1882 7559 6.349300 ACAGTCTGAAGAAGCAAAGTCTAAA 58.651 36.000 6.91 0.00 0.00 1.85
1883 7560 5.918608 ACAGTCTGAAGAAGCAAAGTCTAA 58.081 37.500 6.91 0.00 0.00 2.10
1884 7561 5.537300 ACAGTCTGAAGAAGCAAAGTCTA 57.463 39.130 6.91 0.00 0.00 2.59
1885 7562 4.414337 ACAGTCTGAAGAAGCAAAGTCT 57.586 40.909 6.91 0.00 0.00 3.24
1886 7563 5.533482 TCTACAGTCTGAAGAAGCAAAGTC 58.467 41.667 6.91 0.00 0.00 3.01
1887 7564 5.537300 TCTACAGTCTGAAGAAGCAAAGT 57.463 39.130 6.91 0.00 0.00 2.66
1888 7565 6.464895 CTTCTACAGTCTGAAGAAGCAAAG 57.535 41.667 6.91 0.00 41.38 2.77
1893 7570 4.241681 GGTGCTTCTACAGTCTGAAGAAG 58.758 47.826 6.91 11.68 45.85 2.85
2045 9509 5.240844 CACACCGAAAATCCTAAGGTTCTTT 59.759 40.000 0.00 0.00 32.04 2.52
2046 9510 4.760204 CACACCGAAAATCCTAAGGTTCTT 59.240 41.667 0.00 0.00 32.04 2.52
2047 9511 4.202430 ACACACCGAAAATCCTAAGGTTCT 60.202 41.667 0.00 0.00 32.04 3.01
2048 9512 4.070009 ACACACCGAAAATCCTAAGGTTC 58.930 43.478 0.00 0.00 32.04 3.62
2049 9513 4.070009 GACACACCGAAAATCCTAAGGTT 58.930 43.478 0.00 0.00 32.04 3.50
2050 9514 3.326880 AGACACACCGAAAATCCTAAGGT 59.673 43.478 0.00 0.00 35.24 3.50
2051 9515 3.939066 AGACACACCGAAAATCCTAAGG 58.061 45.455 0.00 0.00 0.00 2.69
2052 9516 5.109903 CCTAGACACACCGAAAATCCTAAG 58.890 45.833 0.00 0.00 0.00 2.18
2053 9517 4.529377 ACCTAGACACACCGAAAATCCTAA 59.471 41.667 0.00 0.00 0.00 2.69
2054 9518 4.091549 ACCTAGACACACCGAAAATCCTA 58.908 43.478 0.00 0.00 0.00 2.94
2055 9519 2.904434 ACCTAGACACACCGAAAATCCT 59.096 45.455 0.00 0.00 0.00 3.24
2056 9520 3.329929 ACCTAGACACACCGAAAATCC 57.670 47.619 0.00 0.00 0.00 3.01
2057 9521 4.995487 AGAAACCTAGACACACCGAAAATC 59.005 41.667 0.00 0.00 0.00 2.17
2058 9522 4.755123 CAGAAACCTAGACACACCGAAAAT 59.245 41.667 0.00 0.00 0.00 1.82
2059 9523 4.124238 CAGAAACCTAGACACACCGAAAA 58.876 43.478 0.00 0.00 0.00 2.29
2060 9524 3.385433 TCAGAAACCTAGACACACCGAAA 59.615 43.478 0.00 0.00 0.00 3.46
2304 9852 5.569355 TGGCCGGATATATTCATCAATGTT 58.431 37.500 5.05 0.00 0.00 2.71
2307 9855 5.126061 GCTTTGGCCGGATATATTCATCAAT 59.874 40.000 5.05 0.00 0.00 2.57
2347 9899 8.696374 GCTAATATATCTAGCACTATTGACCCA 58.304 37.037 15.93 0.00 41.25 4.51
2450 10003 1.503542 GAGGGCACGTGCTCAAATG 59.496 57.895 39.53 1.54 46.01 2.32
2492 10046 2.813474 TCGAAGCCATTGCGTCCG 60.813 61.111 0.00 0.00 42.19 4.79
2499 10053 1.677217 GCAGAAGAGGTCGAAGCCATT 60.677 52.381 0.00 0.00 0.00 3.16
2501 10055 1.293498 GCAGAAGAGGTCGAAGCCA 59.707 57.895 0.00 0.00 0.00 4.75
2502 10056 1.807573 CGCAGAAGAGGTCGAAGCC 60.808 63.158 0.00 0.00 0.00 4.35
2517 10071 2.672996 GCCAAGAAGAAGGCCGCA 60.673 61.111 0.00 0.00 45.18 5.69
2538 10092 0.741221 GACCCATGGCTGAAGACGAC 60.741 60.000 6.09 0.00 0.00 4.34
2544 10098 2.350895 CCACGACCCATGGCTGAA 59.649 61.111 6.09 0.00 0.00 3.02
2558 10112 0.962356 TCGACTACTTCCCCGACCAC 60.962 60.000 0.00 0.00 0.00 4.16
2560 10114 0.455005 CTTCGACTACTTCCCCGACC 59.545 60.000 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.