Multiple sequence alignment - TraesCS7B01G329500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G329500 chr7B 100.000 3007 0 0 1 3007 584310720 584313726 0.000000e+00 5553
1 TraesCS7B01G329500 chr7A 93.479 2285 95 28 757 3007 623455783 623458047 0.000000e+00 3345
2 TraesCS7B01G329500 chr7A 94.778 383 14 4 408 785 623455374 623455755 2.580000e-165 592
3 TraesCS7B01G329500 chr7A 87.857 280 10 2 124 379 623455097 623455376 1.050000e-79 307
4 TraesCS7B01G329500 chr7A 91.111 90 4 2 1 90 623454629 623454714 5.270000e-23 119
5 TraesCS7B01G329500 chr7D 92.510 2283 107 35 757 3007 540852490 540854740 0.000000e+00 3210
6 TraesCS7B01G329500 chr7D 89.212 825 29 19 1 785 540851666 540852470 0.000000e+00 976
7 TraesCS7B01G329500 chr1A 94.667 75 2 2 463 536 466043423 466043496 6.810000e-22 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G329500 chr7B 584310720 584313726 3006 False 5553.00 5553 100.00000 1 3007 1 chr7B.!!$F1 3006
1 TraesCS7B01G329500 chr7A 623454629 623458047 3418 False 1090.75 3345 91.80625 1 3007 4 chr7A.!!$F1 3006
2 TraesCS7B01G329500 chr7D 540851666 540854740 3074 False 2093.00 3210 90.86100 1 3007 2 chr7D.!!$F1 3006

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
31 32 0.176680 GCCAGATGCTCGAGGAAGAA 59.823 55.0 11.77 0.00 36.87 2.52 F
400 788 0.244450 TACGTACCAGCTTTGGTCCG 59.756 55.0 8.32 8.32 45.07 4.79 F
858 1305 0.323087 ACATTAGGCCCAACGAACCC 60.323 55.0 0.00 0.00 0.00 4.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1865 2351 0.921662 CGTCGATCTGAACGAGCTCG 60.922 60.000 33.45 33.45 40.90 5.03 R
1871 2357 3.062059 CGATAAAACCGTCGATCTGAACG 60.062 47.826 0.44 0.44 40.11 3.95 R
2532 3033 0.608035 TCGAGGGTGAAATGTTGGCC 60.608 55.000 0.00 0.00 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.434685 GCCAGATGCTCGAGGAAG 57.565 61.111 11.77 4.03 36.87 3.46
30 31 1.819229 GCCAGATGCTCGAGGAAGA 59.181 57.895 11.77 0.00 36.87 2.87
31 32 0.176680 GCCAGATGCTCGAGGAAGAA 59.823 55.000 11.77 0.00 36.87 2.52
35 36 0.528684 GATGCTCGAGGAAGAACGGG 60.529 60.000 11.77 0.00 0.00 5.28
95 96 2.045524 TGGAGATCTGGAGAATCAGGC 58.954 52.381 0.00 0.00 36.25 4.85
100 101 0.904865 TCTGGAGAATCAGGCGTGGT 60.905 55.000 6.56 0.00 36.25 4.16
101 102 0.742281 CTGGAGAATCAGGCGTGGTG 60.742 60.000 6.56 0.00 36.25 4.17
114 122 1.889530 CGTGGTGGAGAGAGGGGTTC 61.890 65.000 0.00 0.00 0.00 3.62
116 124 1.609794 GGTGGAGAGAGGGGTTCGT 60.610 63.158 0.00 0.00 0.00 3.85
396 784 2.523015 CGTACTACGTACCAGCTTTGG 58.477 52.381 0.09 0.00 35.81 3.28
397 785 2.095059 CGTACTACGTACCAGCTTTGGT 60.095 50.000 2.83 2.83 38.13 3.67
398 786 2.738013 ACTACGTACCAGCTTTGGTC 57.262 50.000 0.00 0.00 42.99 4.02
399 787 1.274447 ACTACGTACCAGCTTTGGTCC 59.726 52.381 0.00 0.00 42.99 4.46
400 788 0.244450 TACGTACCAGCTTTGGTCCG 59.756 55.000 8.32 8.32 45.07 4.79
401 789 1.005394 CGTACCAGCTTTGGTCCGT 60.005 57.895 0.00 0.00 42.99 4.69
402 790 1.012486 CGTACCAGCTTTGGTCCGTC 61.012 60.000 0.00 0.00 42.99 4.79
403 791 0.672711 GTACCAGCTTTGGTCCGTCC 60.673 60.000 0.00 0.00 42.99 4.79
404 792 2.162338 TACCAGCTTTGGTCCGTCCG 62.162 60.000 0.00 0.00 42.99 4.79
405 793 2.030562 CAGCTTTGGTCCGTCCGT 59.969 61.111 0.00 0.00 39.52 4.69
406 794 2.027625 CAGCTTTGGTCCGTCCGTC 61.028 63.158 0.00 0.00 39.52 4.79
407 795 2.741211 GCTTTGGTCCGTCCGTCC 60.741 66.667 0.00 0.00 39.52 4.79
592 980 5.165961 TGATGGTTCCCTTTAACTCTCTG 57.834 43.478 0.00 0.00 0.00 3.35
605 993 6.596309 TTAACTCTCTGCTCTGAGAATGAA 57.404 37.500 9.28 0.00 41.85 2.57
611 999 2.540516 CTGCTCTGAGAATGAATGCTCG 59.459 50.000 9.28 0.00 33.89 5.03
745 1135 0.592637 TTGTGCAAAGACAGGATGCG 59.407 50.000 0.00 0.00 42.53 4.73
775 1168 4.156739 GGGATTTGTTTTGCAGAGTCTAGG 59.843 45.833 0.00 0.00 0.00 3.02
778 1171 1.343142 TGTTTTGCAGAGTCTAGGCGA 59.657 47.619 0.00 0.00 0.00 5.54
796 1243 2.882324 CGACTCTTTCCAGTAGGCTTC 58.118 52.381 0.00 0.00 33.74 3.86
806 1253 2.611518 CAGTAGGCTTCTTCAGTTCGG 58.388 52.381 0.00 0.00 0.00 4.30
818 1265 2.438434 GTTCGGTCATGGGCCCTG 60.438 66.667 25.70 18.57 0.00 4.45
858 1305 0.323087 ACATTAGGCCCAACGAACCC 60.323 55.000 0.00 0.00 0.00 4.11
873 1326 2.661718 GAACCCTGGTGAAAGGTGAAA 58.338 47.619 0.00 0.00 35.34 2.69
888 1341 1.474077 GTGAAACCACATCCATCCAGC 59.526 52.381 0.00 0.00 34.76 4.85
889 1342 1.075212 TGAAACCACATCCATCCAGCA 59.925 47.619 0.00 0.00 0.00 4.41
890 1343 1.747355 GAAACCACATCCATCCAGCAG 59.253 52.381 0.00 0.00 0.00 4.24
908 1361 4.102035 GCAGGAAGCGAAAAAGAATCAT 57.898 40.909 0.00 0.00 0.00 2.45
927 1380 4.335647 AACGGGTGAGCCTGCCTG 62.336 66.667 0.00 0.00 45.10 4.85
931 1384 3.402681 GGTGAGCCTGCCTGCCTA 61.403 66.667 0.00 0.00 0.00 3.93
932 1385 2.124942 GTGAGCCTGCCTGCCTAC 60.125 66.667 0.00 0.00 0.00 3.18
961 1419 1.289109 GACAACATCCACGACACCCG 61.289 60.000 0.00 0.00 45.44 5.28
1009 1471 1.227497 CGGCTTCAGATGAGGCTCC 60.227 63.158 12.86 0.00 45.19 4.70
1025 1487 3.062466 CCACTCGCCGAGTCTCCA 61.062 66.667 18.36 0.00 41.37 3.86
1120 1588 2.125106 CCCACCGCAGCCTCTTAC 60.125 66.667 0.00 0.00 0.00 2.34
1334 1820 6.347725 GCTAGAATTGTAGGATTAACCATGCG 60.348 42.308 11.29 0.00 42.04 4.73
1547 2033 2.787473 TGACGCTCAAGATGGGAATT 57.213 45.000 0.00 0.00 0.00 2.17
1710 2196 0.890542 TGTGCATGCCACTTGTCTCC 60.891 55.000 16.68 0.00 44.92 3.71
1732 2218 7.016153 TCCTTTCTGAGCCTGTAAATTTCTA 57.984 36.000 0.00 0.00 0.00 2.10
1761 2247 6.879458 CAGCCTAGGTAGTTAGTTCAACAAAT 59.121 38.462 11.31 0.00 39.81 2.32
1803 2289 6.371809 AAAACTGCGAATCTGAAGTTTGTA 57.628 33.333 10.40 0.00 40.91 2.41
1815 2301 7.490962 TCTGAAGTTTGTACAATGTTGTAGG 57.509 36.000 9.56 0.00 43.67 3.18
1880 2366 0.593773 GCCTCGAGCTCGTTCAGATC 60.594 60.000 33.33 15.48 40.80 2.75
1889 2375 2.325761 CTCGTTCAGATCGACGGTTTT 58.674 47.619 15.71 0.00 39.59 2.43
1890 2376 3.495193 CTCGTTCAGATCGACGGTTTTA 58.505 45.455 15.71 0.65 39.59 1.52
1913 2399 4.002982 TCGTCAAGATTGAAATCAGTGGG 58.997 43.478 5.86 1.14 39.21 4.61
1943 2429 3.673338 CAGGTGTAATGACAGTACGTGTG 59.327 47.826 8.41 0.00 40.56 3.82
2010 2496 5.176590 GCTGTTCAGTTGACAGAGTAGAAAG 59.823 44.000 8.33 0.00 33.65 2.62
2011 2497 5.050490 TGTTCAGTTGACAGAGTAGAAAGC 58.950 41.667 0.00 0.00 0.00 3.51
2077 2573 5.010314 ACGTTTCCATGTCAGTACTTCAGTA 59.990 40.000 0.00 0.00 0.00 2.74
2081 2577 8.443937 GTTTCCATGTCAGTACTTCAGTATTTC 58.556 37.037 0.00 0.00 32.54 2.17
2161 2660 3.118531 AGAATTATGTGGCTGGGAGAGT 58.881 45.455 0.00 0.00 0.00 3.24
2292 2793 4.562552 GGCAAAGGCTAAGGCAACATTTTA 60.563 41.667 7.63 0.00 40.87 1.52
2307 2808 6.405731 GCAACATTTTATGCAGACCTGGAATA 60.406 38.462 0.00 0.00 42.12 1.75
2395 2896 8.728337 TCAACTCAAAGATTCTCCAATCTATG 57.272 34.615 0.00 0.00 46.96 2.23
2422 2923 1.167851 CTCTCAAATTGGCGGCTTGA 58.832 50.000 11.43 11.13 0.00 3.02
2502 3003 6.122277 CCTATCTCTTTATTCCCTGTTTGCA 58.878 40.000 0.00 0.00 0.00 4.08
2532 3033 2.923020 AGCAAGTTTGTTCTTTGCAACG 59.077 40.909 0.00 0.00 0.00 4.10
2540 3041 0.749649 TTCTTTGCAACGGCCAACAT 59.250 45.000 2.24 0.00 40.13 2.71
2611 3112 3.613737 CGCAGGCTTGGAAATTTTACATG 59.386 43.478 0.00 0.00 0.00 3.21
2652 3154 2.038659 TCTTTTCAAAAGGGCCCACAG 58.961 47.619 27.56 11.10 0.00 3.66
2707 3209 2.947243 GCTTGATGCTCCTCCAATTGGA 60.947 50.000 25.53 25.53 39.36 3.53
2709 3211 4.722220 CTTGATGCTCCTCCAATTGGATA 58.278 43.478 27.20 16.98 44.46 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.278127 TGGTCAATCCCGTTCTTCCTC 59.722 52.381 0.00 0.00 34.77 3.71
24 25 1.358152 TGGTCAATCCCGTTCTTCCT 58.642 50.000 0.00 0.00 34.77 3.36
27 28 2.039746 TCACATGGTCAATCCCGTTCTT 59.960 45.455 0.00 0.00 34.77 2.52
28 29 1.628340 TCACATGGTCAATCCCGTTCT 59.372 47.619 0.00 0.00 34.77 3.01
29 30 1.737793 GTCACATGGTCAATCCCGTTC 59.262 52.381 0.00 0.00 34.77 3.95
30 31 1.351017 AGTCACATGGTCAATCCCGTT 59.649 47.619 0.00 0.00 34.77 4.44
31 32 0.984230 AGTCACATGGTCAATCCCGT 59.016 50.000 0.00 0.00 34.77 5.28
35 36 3.276857 AGCATCAGTCACATGGTCAATC 58.723 45.455 0.00 0.00 0.00 2.67
95 96 1.889530 GAACCCCTCTCTCCACCACG 61.890 65.000 0.00 0.00 0.00 4.94
100 101 1.609501 CCACGAACCCCTCTCTCCA 60.610 63.158 0.00 0.00 0.00 3.86
101 102 1.305046 TCCACGAACCCCTCTCTCC 60.305 63.158 0.00 0.00 0.00 3.71
114 122 2.027561 TCCTTATTTGGTGTCCTCCACG 60.028 50.000 0.00 0.00 45.52 4.94
116 124 2.026262 GCTCCTTATTTGGTGTCCTCCA 60.026 50.000 0.00 0.00 35.49 3.86
148 498 3.116091 CCATTATTTGGCCGCTCCT 57.884 52.632 0.00 0.00 39.09 3.69
353 741 2.356673 GAACACCGACCGGGACAC 60.357 66.667 13.43 0.00 39.97 3.67
388 776 2.027625 GACGGACGGACCAAAGCTG 61.028 63.158 0.00 0.00 38.90 4.24
389 777 2.342648 GACGGACGGACCAAAGCT 59.657 61.111 0.00 0.00 38.90 3.74
390 778 2.741211 GGACGGACGGACCAAAGC 60.741 66.667 0.00 0.00 38.90 3.51
391 779 2.431942 CGGACGGACGGACCAAAG 60.432 66.667 9.84 0.00 38.90 2.77
392 780 3.211564 GACGGACGGACGGACCAAA 62.212 63.158 6.00 0.00 38.90 3.28
393 781 3.673484 GACGGACGGACGGACCAA 61.673 66.667 6.00 0.00 38.90 3.67
396 784 3.368571 AAGGACGGACGGACGGAC 61.369 66.667 6.00 0.00 38.39 4.79
397 785 3.367743 CAAGGACGGACGGACGGA 61.368 66.667 6.00 0.00 38.39 4.69
398 786 4.430765 CCAAGGACGGACGGACGG 62.431 72.222 6.00 0.00 38.39 4.79
399 787 2.707849 ATCCAAGGACGGACGGACG 61.708 63.158 0.00 0.00 38.07 4.79
400 788 1.153628 CATCCAAGGACGGACGGAC 60.154 63.158 0.00 0.00 38.07 4.79
401 789 3.014085 GCATCCAAGGACGGACGGA 62.014 63.158 0.00 0.00 38.07 4.69
402 790 2.511600 GCATCCAAGGACGGACGG 60.512 66.667 0.00 0.00 38.07 4.79
403 791 2.511600 GGCATCCAAGGACGGACG 60.512 66.667 0.00 0.00 38.07 4.79
404 792 2.124695 GGGCATCCAAGGACGGAC 60.125 66.667 0.00 0.00 38.07 4.79
405 793 3.407967 GGGGCATCCAAGGACGGA 61.408 66.667 0.00 0.00 40.07 4.69
406 794 4.506255 GGGGGCATCCAAGGACGG 62.506 72.222 0.00 0.00 37.22 4.79
407 795 4.856801 CGGGGGCATCCAAGGACG 62.857 72.222 0.00 0.00 37.22 4.79
592 980 2.539274 GTCGAGCATTCATTCTCAGAGC 59.461 50.000 0.00 0.00 0.00 4.09
605 993 1.537202 GTCTGCAAAAAGGTCGAGCAT 59.463 47.619 18.15 0.84 34.35 3.79
695 1085 5.922739 TTTCACTGTGCAGTATGTGTAAG 57.077 39.130 2.12 0.00 40.20 2.34
745 1135 6.761242 ACTCTGCAAAACAAATCCCTAAAAAC 59.239 34.615 0.00 0.00 0.00 2.43
775 1168 0.533032 AGCCTACTGGAAAGAGTCGC 59.467 55.000 0.00 0.00 34.57 5.19
778 1171 3.904339 TGAAGAAGCCTACTGGAAAGAGT 59.096 43.478 0.00 0.00 34.57 3.24
785 1178 2.611518 CGAACTGAAGAAGCCTACTGG 58.388 52.381 0.00 0.00 0.00 4.00
796 1243 1.026718 GGCCCATGACCGAACTGAAG 61.027 60.000 0.00 0.00 0.00 3.02
818 1265 3.866582 CCATCGTCTCCAGGGCCC 61.867 72.222 16.46 16.46 0.00 5.80
858 1305 2.374184 TGTGGTTTCACCTTTCACCAG 58.626 47.619 0.00 0.00 40.04 4.00
873 1326 0.915872 TCCTGCTGGATGGATGTGGT 60.916 55.000 8.48 0.00 37.46 4.16
875 1328 1.676746 CTTCCTGCTGGATGGATGTG 58.323 55.000 13.72 0.00 42.81 3.21
876 1329 0.106819 GCTTCCTGCTGGATGGATGT 60.107 55.000 21.97 0.00 42.81 3.06
877 1330 1.164662 CGCTTCCTGCTGGATGGATG 61.165 60.000 21.97 9.20 42.81 3.51
878 1331 1.147824 CGCTTCCTGCTGGATGGAT 59.852 57.895 21.97 0.00 42.81 3.41
879 1332 1.552799 TTCGCTTCCTGCTGGATGGA 61.553 55.000 21.97 15.79 42.81 3.41
881 1334 1.167851 TTTTCGCTTCCTGCTGGATG 58.832 50.000 13.72 16.22 42.81 3.51
882 1335 1.815003 CTTTTTCGCTTCCTGCTGGAT 59.185 47.619 13.72 0.00 42.81 3.41
887 1340 3.559238 TGATTCTTTTTCGCTTCCTGC 57.441 42.857 0.00 0.00 38.57 4.85
888 1341 5.300969 TCATGATTCTTTTTCGCTTCCTG 57.699 39.130 0.00 0.00 0.00 3.86
889 1342 5.617751 CGTTCATGATTCTTTTTCGCTTCCT 60.618 40.000 0.00 0.00 0.00 3.36
890 1343 4.554973 CGTTCATGATTCTTTTTCGCTTCC 59.445 41.667 0.00 0.00 0.00 3.46
901 1354 1.407437 GGCTCACCCGTTCATGATTCT 60.407 52.381 0.00 0.00 0.00 2.40
908 1361 4.329545 GGCAGGCTCACCCGTTCA 62.330 66.667 0.00 0.00 39.21 3.18
942 1395 1.289109 CGGGTGTCGTGGATGTTGTC 61.289 60.000 0.00 0.00 0.00 3.18
943 1396 1.301401 CGGGTGTCGTGGATGTTGT 60.301 57.895 0.00 0.00 0.00 3.32
944 1397 2.677003 GCGGGTGTCGTGGATGTTG 61.677 63.158 0.00 0.00 41.72 3.33
945 1398 2.358247 GCGGGTGTCGTGGATGTT 60.358 61.111 0.00 0.00 41.72 2.71
986 1448 1.601430 GCCTCATCTGAAGCCGATTTC 59.399 52.381 0.00 0.00 0.00 2.17
1009 1471 2.487428 CTGGAGACTCGGCGAGTG 59.513 66.667 43.30 26.00 43.53 3.51
1055 1523 3.302344 CAAAGGGGGCGTTGGTGG 61.302 66.667 0.00 0.00 0.00 4.61
1120 1588 4.021104 GGGGAAGAGGAAATGGTTTGAAAG 60.021 45.833 0.00 0.00 0.00 2.62
1334 1820 5.300286 CCCTTCAGGTATCAATCAATCAACC 59.700 44.000 0.00 0.00 0.00 3.77
1547 2033 4.671590 TCACGGAGGCGGGACTCA 62.672 66.667 3.59 0.00 39.27 3.41
1595 2081 1.590147 GGTCTCGGTGTCGTGGATT 59.410 57.895 0.00 0.00 37.69 3.01
1732 2218 7.179694 TGTTGAACTAACTACCTAGGCTGTAAT 59.820 37.037 9.30 0.00 40.05 1.89
1772 2258 8.607459 ACTTCAGATTCGCAGTTTTATCAATAG 58.393 33.333 0.00 0.00 0.00 1.73
1780 2266 5.248870 ACAAACTTCAGATTCGCAGTTTT 57.751 34.783 7.69 1.04 37.36 2.43
1787 2273 7.132213 ACAACATTGTACAAACTTCAGATTCG 58.868 34.615 13.23 0.00 40.16 3.34
1803 2289 5.187772 TCTCATCTAGCACCTACAACATTGT 59.812 40.000 2.32 2.32 44.86 2.71
1815 2301 1.336702 CGGCCTGATCTCATCTAGCAC 60.337 57.143 0.00 0.00 32.14 4.40
1865 2351 0.921662 CGTCGATCTGAACGAGCTCG 60.922 60.000 33.45 33.45 40.90 5.03
1871 2357 3.062059 CGATAAAACCGTCGATCTGAACG 60.062 47.826 0.44 0.44 40.11 3.95
1889 2375 5.817296 CCCACTGATTTCAATCTTGACGATA 59.183 40.000 0.00 0.00 36.83 2.92
1890 2376 4.637534 CCCACTGATTTCAATCTTGACGAT 59.362 41.667 0.00 0.00 36.83 3.73
1943 2429 4.574828 TCTCTCAGTTTTTGTGTTACAGCC 59.425 41.667 0.00 0.00 0.00 4.85
2010 2496 3.192001 TCTTCCTTTGATTGATGCACAGC 59.808 43.478 0.00 0.00 0.00 4.40
2011 2497 4.216902 TGTCTTCCTTTGATTGATGCACAG 59.783 41.667 0.00 0.00 0.00 3.66
2161 2660 6.518493 ACTTAACGGTGACATGAGTTTTCTA 58.482 36.000 0.00 0.00 0.00 2.10
2210 2711 5.049680 GTCACTGTTGTAACAATGGTCGAAT 60.050 40.000 6.39 0.00 36.83 3.34
2280 2781 3.194116 CAGGTCTGCATAAAATGTTGCCT 59.806 43.478 0.00 0.00 38.08 4.75
2282 2783 3.193267 TCCAGGTCTGCATAAAATGTTGC 59.807 43.478 0.00 0.00 39.33 4.17
2283 2784 5.389859 TTCCAGGTCTGCATAAAATGTTG 57.610 39.130 0.00 0.00 0.00 3.33
2292 2793 4.785346 ACTGAATATTCCAGGTCTGCAT 57.215 40.909 12.90 0.00 36.03 3.96
2307 2808 3.584848 AGGTGCCACTAGAGAAACTGAAT 59.415 43.478 0.00 0.00 0.00 2.57
2394 2895 5.008613 GCCGCCAATTTGAGAGAAATATACA 59.991 40.000 0.00 0.00 0.00 2.29
2395 2896 5.239525 AGCCGCCAATTTGAGAGAAATATAC 59.760 40.000 0.00 0.00 0.00 1.47
2422 2923 3.126453 ACAGGGAATAAAGAGATGGCCT 58.874 45.455 3.32 0.00 0.00 5.19
2502 3003 5.914898 AGAACAAACTTGCTTTTACTGGT 57.085 34.783 0.00 0.00 0.00 4.00
2532 3033 0.608035 TCGAGGGTGAAATGTTGGCC 60.608 55.000 0.00 0.00 0.00 5.36
2540 3041 1.550524 CCTCTGATGTCGAGGGTGAAA 59.449 52.381 10.89 0.00 43.47 2.69
2652 3154 1.941325 CGTGAAGCTATCAACCCTCC 58.059 55.000 0.00 0.00 40.50 4.30
2707 3209 6.550163 AGATTAGGCAAATGATGAAGGCTAT 58.450 36.000 0.00 0.00 38.65 2.97
2709 3211 4.801164 AGATTAGGCAAATGATGAAGGCT 58.199 39.130 0.00 0.00 40.25 4.58
2958 3460 1.137404 CTTTTGCGAGAATGGGCGG 59.863 57.895 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.