Multiple sequence alignment - TraesCS7B01G329100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G329100 chr7B 100.000 2609 0 0 1 2609 584187029 584184421 0.000000e+00 4819
1 TraesCS7B01G329100 chr7B 80.737 353 41 10 1822 2171 584184335 584184663 1.550000e-62 250
2 TraesCS7B01G329100 chr7B 91.954 174 12 2 469 641 584191460 584191288 2.590000e-60 243
3 TraesCS7B01G329100 chr7B 79.026 267 29 10 2367 2609 584184859 584185122 9.670000e-35 158
4 TraesCS7B01G329100 chr7A 90.141 1420 98 18 845 2257 622742361 622740977 0.000000e+00 1808
5 TraesCS7B01G329100 chr7A 89.595 519 41 7 1147 1656 624772614 624773128 0.000000e+00 647
6 TraesCS7B01G329100 chr7A 89.646 367 20 5 472 824 622742775 622742413 3.960000e-123 451
7 TraesCS7B01G329100 chr7A 89.595 346 36 0 2264 2609 622740637 622740292 8.570000e-120 440
8 TraesCS7B01G329100 chr7A 88.854 314 27 2 845 1150 624767751 624768064 1.900000e-101 379
9 TraesCS7B01G329100 chr7A 81.844 347 33 19 468 812 624752329 624752647 5.540000e-67 265
10 TraesCS7B01G329100 chr5B 83.257 651 91 11 1000 1640 609430265 609430907 1.350000e-162 582
11 TraesCS7B01G329100 chr5B 82.946 645 96 9 1000 1636 609393132 609393770 1.050000e-158 569
12 TraesCS7B01G329100 chr5B 81.647 692 102 14 931 1609 609259116 609259795 3.790000e-153 551
13 TraesCS7B01G329100 chr5B 83.239 352 50 7 10 356 599700394 599700047 5.420000e-82 315
14 TraesCS7B01G329100 chr5D 82.822 652 98 8 997 1640 493777512 493778157 2.910000e-159 571
15 TraesCS7B01G329100 chr5D 86.705 519 62 6 1125 1640 493710585 493711099 1.050000e-158 569
16 TraesCS7B01G329100 chr5D 86.705 519 62 6 1125 1640 493716638 493717152 1.050000e-158 569
17 TraesCS7B01G329100 chr5D 86.705 519 62 6 1125 1640 493719122 493719636 1.050000e-158 569
18 TraesCS7B01G329100 chr5D 86.236 356 44 4 4 356 429051975 429051622 5.270000e-102 381
19 TraesCS7B01G329100 chrUn 86.705 519 62 6 1125 1640 338978895 338979409 1.050000e-158 569
20 TraesCS7B01G329100 chr4B 86.034 358 46 3 6 360 368415460 368415816 5.270000e-102 381
21 TraesCS7B01G329100 chr2B 85.417 336 46 1 15 347 707608429 707608764 1.920000e-91 346
22 TraesCS7B01G329100 chr1A 84.181 354 50 4 6 354 529595936 529595584 3.220000e-89 339
23 TraesCS7B01G329100 chr1D 81.337 359 64 1 1 356 400008801 400008443 3.290000e-74 289
24 TraesCS7B01G329100 chr3D 82.477 331 52 3 21 347 93184185 93183857 4.250000e-73 285
25 TraesCS7B01G329100 chr5A 81.556 347 61 2 17 360 566345444 566345790 1.530000e-72 283
26 TraesCS7B01G329100 chr2A 80.726 358 65 2 6 359 277615822 277615465 2.560000e-70 276
27 TraesCS7B01G329100 chr7D 85.926 135 11 6 455 587 541418285 541418413 1.260000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G329100 chr7B 584184421 584187029 2608 True 4819.000000 4819 100.0000 1 2609 1 chr7B.!!$R1 2608
1 TraesCS7B01G329100 chr7B 584184335 584185122 787 False 204.000000 250 79.8815 1822 2609 2 chr7B.!!$F1 787
2 TraesCS7B01G329100 chr7A 622740292 622742775 2483 True 899.666667 1808 89.7940 472 2609 3 chr7A.!!$R1 2137
3 TraesCS7B01G329100 chr7A 624772614 624773128 514 False 647.000000 647 89.5950 1147 1656 1 chr7A.!!$F3 509
4 TraesCS7B01G329100 chr5B 609430265 609430907 642 False 582.000000 582 83.2570 1000 1640 1 chr5B.!!$F3 640
5 TraesCS7B01G329100 chr5B 609393132 609393770 638 False 569.000000 569 82.9460 1000 1636 1 chr5B.!!$F2 636
6 TraesCS7B01G329100 chr5B 609259116 609259795 679 False 551.000000 551 81.6470 931 1609 1 chr5B.!!$F1 678
7 TraesCS7B01G329100 chr5D 493777512 493778157 645 False 571.000000 571 82.8220 997 1640 1 chr5D.!!$F2 643
8 TraesCS7B01G329100 chr5D 493710585 493711099 514 False 569.000000 569 86.7050 1125 1640 1 chr5D.!!$F1 515
9 TraesCS7B01G329100 chr5D 493716638 493719636 2998 False 569.000000 569 86.7050 1125 1640 2 chr5D.!!$F3 515
10 TraesCS7B01G329100 chrUn 338978895 338979409 514 False 569.000000 569 86.7050 1125 1640 1 chrUn.!!$F1 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
57 58 0.034059 CGTCAACAGCAGAAGGGTCT 59.966 55.0 0.0 0.0 32.85 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1701 4264 0.250727 TTAGCAGCAACTCCACCACC 60.251 55.0 0.0 0.0 0.0 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.093952 CGCAAGAGGCAGGCGTTG 62.094 66.667 7.52 7.52 45.27 4.10
22 23 2.980233 GCAAGAGGCAGGCGTTGT 60.980 61.111 12.02 0.00 43.97 3.32
23 24 2.555547 GCAAGAGGCAGGCGTTGTT 61.556 57.895 12.02 0.00 43.97 2.83
24 25 2.032981 CAAGAGGCAGGCGTTGTTT 58.967 52.632 4.47 0.00 0.00 2.83
25 26 0.318107 CAAGAGGCAGGCGTTGTTTG 60.318 55.000 4.47 0.63 0.00 2.93
26 27 1.455383 AAGAGGCAGGCGTTGTTTGG 61.455 55.000 0.00 0.00 0.00 3.28
27 28 3.558099 GAGGCAGGCGTTGTTTGGC 62.558 63.158 0.00 0.00 37.63 4.52
28 29 4.999939 GGCAGGCGTTGTTTGGCG 63.000 66.667 0.00 0.00 36.92 5.69
29 30 4.264638 GCAGGCGTTGTTTGGCGT 62.265 61.111 0.00 0.00 36.92 5.68
30 31 2.051345 CAGGCGTTGTTTGGCGTC 60.051 61.111 0.00 0.00 36.92 5.19
31 32 2.515057 AGGCGTTGTTTGGCGTCA 60.515 55.556 0.00 0.00 34.90 4.35
32 33 1.896660 AGGCGTTGTTTGGCGTCAT 60.897 52.632 0.00 0.00 34.90 3.06
33 34 1.729131 GGCGTTGTTTGGCGTCATG 60.729 57.895 0.00 0.00 32.48 3.07
34 35 1.729131 GCGTTGTTTGGCGTCATGG 60.729 57.895 0.00 0.00 0.00 3.66
35 36 1.652012 CGTTGTTTGGCGTCATGGT 59.348 52.632 0.00 0.00 0.00 3.55
36 37 0.660005 CGTTGTTTGGCGTCATGGTG 60.660 55.000 0.00 0.00 0.00 4.17
37 38 0.318614 GTTGTTTGGCGTCATGGTGG 60.319 55.000 0.00 0.00 0.00 4.61
38 39 2.081425 TTGTTTGGCGTCATGGTGGC 62.081 55.000 0.00 0.00 0.00 5.01
44 45 2.860293 CGTCATGGTGGCGTCAAC 59.140 61.111 0.00 0.00 41.12 3.18
45 46 1.958715 CGTCATGGTGGCGTCAACA 60.959 57.895 11.63 11.63 45.66 3.33
46 47 1.868997 GTCATGGTGGCGTCAACAG 59.131 57.895 15.41 6.01 44.69 3.16
47 48 1.965930 TCATGGTGGCGTCAACAGC 60.966 57.895 15.41 3.89 44.69 4.40
48 49 2.112928 ATGGTGGCGTCAACAGCA 59.887 55.556 15.41 9.71 44.69 4.41
49 50 2.591429 TGGTGGCGTCAACAGCAG 60.591 61.111 2.08 0.00 40.94 4.24
50 51 2.280797 GGTGGCGTCAACAGCAGA 60.281 61.111 0.00 0.00 36.42 4.26
51 52 1.891919 GGTGGCGTCAACAGCAGAA 60.892 57.895 0.00 0.00 36.42 3.02
52 53 1.571460 GTGGCGTCAACAGCAGAAG 59.429 57.895 0.00 0.00 36.08 2.85
53 54 1.597854 TGGCGTCAACAGCAGAAGG 60.598 57.895 0.00 0.00 36.08 3.46
54 55 2.328099 GGCGTCAACAGCAGAAGGG 61.328 63.158 0.00 0.00 36.08 3.95
55 56 1.598130 GCGTCAACAGCAGAAGGGT 60.598 57.895 0.00 0.00 34.19 4.34
56 57 1.569479 GCGTCAACAGCAGAAGGGTC 61.569 60.000 0.00 0.00 34.19 4.46
57 58 0.034059 CGTCAACAGCAGAAGGGTCT 59.966 55.000 0.00 0.00 32.85 3.85
66 67 2.035530 CAGAAGGGTCTGGCAAGATC 57.964 55.000 0.00 0.00 46.55 2.75
67 68 1.280133 CAGAAGGGTCTGGCAAGATCA 59.720 52.381 3.16 0.00 46.55 2.92
68 69 1.558756 AGAAGGGTCTGGCAAGATCAG 59.441 52.381 3.16 0.00 34.97 2.90
69 70 1.280421 GAAGGGTCTGGCAAGATCAGT 59.720 52.381 3.16 0.00 34.97 3.41
70 71 0.617413 AGGGTCTGGCAAGATCAGTG 59.383 55.000 3.16 0.00 34.97 3.66
71 72 1.028868 GGGTCTGGCAAGATCAGTGC 61.029 60.000 3.16 11.85 41.45 4.40
72 73 0.321919 GGTCTGGCAAGATCAGTGCA 60.322 55.000 19.46 8.00 44.07 4.57
73 74 1.681166 GGTCTGGCAAGATCAGTGCAT 60.681 52.381 19.46 0.00 44.07 3.96
74 75 2.089980 GTCTGGCAAGATCAGTGCATT 58.910 47.619 19.46 0.00 44.07 3.56
75 76 2.089201 TCTGGCAAGATCAGTGCATTG 58.911 47.619 19.46 2.16 44.07 2.82
76 77 2.089201 CTGGCAAGATCAGTGCATTGA 58.911 47.619 14.80 14.80 44.07 2.57
77 78 2.688446 CTGGCAAGATCAGTGCATTGAT 59.312 45.455 23.16 23.16 44.07 2.57
78 79 3.093814 TGGCAAGATCAGTGCATTGATT 58.906 40.909 23.68 8.97 44.07 2.57
79 80 3.119280 TGGCAAGATCAGTGCATTGATTG 60.119 43.478 23.68 19.91 44.07 2.67
92 93 3.966154 CATTGATTGCTCCTGAAGATGC 58.034 45.455 0.00 0.00 0.00 3.91
93 94 2.048444 TGATTGCTCCTGAAGATGCC 57.952 50.000 0.00 0.00 0.00 4.40
94 95 0.942962 GATTGCTCCTGAAGATGCCG 59.057 55.000 0.00 0.00 0.00 5.69
95 96 1.099879 ATTGCTCCTGAAGATGCCGC 61.100 55.000 0.00 0.00 0.00 6.53
96 97 2.124983 GCTCCTGAAGATGCCGCA 60.125 61.111 0.00 0.00 0.00 5.69
97 98 2.178890 GCTCCTGAAGATGCCGCAG 61.179 63.158 0.00 0.00 0.00 5.18
98 99 1.519246 CTCCTGAAGATGCCGCAGA 59.481 57.895 0.00 0.00 0.00 4.26
99 100 0.106335 CTCCTGAAGATGCCGCAGAT 59.894 55.000 0.00 0.00 0.00 2.90
100 101 1.342496 CTCCTGAAGATGCCGCAGATA 59.658 52.381 0.00 0.00 0.00 1.98
101 102 1.762370 TCCTGAAGATGCCGCAGATAA 59.238 47.619 0.00 0.00 0.00 1.75
102 103 2.170397 TCCTGAAGATGCCGCAGATAAA 59.830 45.455 0.00 0.00 0.00 1.40
103 104 2.547211 CCTGAAGATGCCGCAGATAAAG 59.453 50.000 0.00 0.00 0.00 1.85
104 105 2.547211 CTGAAGATGCCGCAGATAAAGG 59.453 50.000 0.00 0.00 0.00 3.11
111 112 3.111038 GCAGATAAAGGCGGCCAC 58.889 61.111 23.09 6.91 0.00 5.01
112 113 2.823829 GCAGATAAAGGCGGCCACG 61.824 63.158 23.09 1.99 44.63 4.94
113 114 2.180204 CAGATAAAGGCGGCCACGG 61.180 63.158 23.09 4.10 41.36 4.94
114 115 2.188469 GATAAAGGCGGCCACGGA 59.812 61.111 23.09 3.42 41.36 4.69
115 116 1.227853 GATAAAGGCGGCCACGGAT 60.228 57.895 23.09 8.59 41.36 4.18
116 117 0.818040 GATAAAGGCGGCCACGGATT 60.818 55.000 23.09 10.11 41.36 3.01
117 118 0.818040 ATAAAGGCGGCCACGGATTC 60.818 55.000 23.09 0.00 41.36 2.52
118 119 1.906105 TAAAGGCGGCCACGGATTCT 61.906 55.000 23.09 0.00 41.36 2.40
119 120 1.906105 AAAGGCGGCCACGGATTCTA 61.906 55.000 23.09 0.00 41.36 2.10
120 121 2.588034 GGCGGCCACGGATTCTAC 60.588 66.667 15.62 0.00 41.36 2.59
121 122 2.185867 GCGGCCACGGATTCTACA 59.814 61.111 2.24 0.00 41.36 2.74
122 123 1.883084 GCGGCCACGGATTCTACAG 60.883 63.158 2.24 0.00 41.36 2.74
123 124 1.883084 CGGCCACGGATTCTACAGC 60.883 63.158 2.24 0.00 36.18 4.40
124 125 1.220749 GGCCACGGATTCTACAGCA 59.779 57.895 0.00 0.00 0.00 4.41
125 126 0.179045 GGCCACGGATTCTACAGCAT 60.179 55.000 0.00 0.00 0.00 3.79
126 127 0.940126 GCCACGGATTCTACAGCATG 59.060 55.000 0.00 0.00 46.00 4.06
127 128 0.940126 CCACGGATTCTACAGCATGC 59.060 55.000 10.51 10.51 42.53 4.06
128 129 1.655484 CACGGATTCTACAGCATGCA 58.345 50.000 21.98 0.00 42.53 3.96
129 130 1.328680 CACGGATTCTACAGCATGCAC 59.671 52.381 21.98 0.49 42.53 4.57
130 131 1.066215 ACGGATTCTACAGCATGCACA 60.066 47.619 21.98 2.90 42.53 4.57
131 132 1.328680 CGGATTCTACAGCATGCACAC 59.671 52.381 21.98 2.08 42.53 3.82
132 133 1.328680 GGATTCTACAGCATGCACACG 59.671 52.381 21.98 7.67 42.53 4.49
133 134 0.729116 ATTCTACAGCATGCACACGC 59.271 50.000 21.98 0.00 42.53 5.34
134 135 1.625759 TTCTACAGCATGCACACGCG 61.626 55.000 21.98 3.53 42.53 6.01
135 136 3.087273 CTACAGCATGCACACGCGG 62.087 63.158 21.98 1.27 42.53 6.46
136 137 3.874807 TACAGCATGCACACGCGGT 62.875 57.895 21.98 13.33 42.53 5.68
151 152 4.008933 GGTGCACGCTGAGGGTCT 62.009 66.667 11.45 0.00 0.00 3.85
152 153 2.740055 GTGCACGCTGAGGGTCTG 60.740 66.667 0.00 0.00 0.00 3.51
153 154 4.687215 TGCACGCTGAGGGTCTGC 62.687 66.667 0.00 1.96 37.88 4.26
154 155 4.385405 GCACGCTGAGGGTCTGCT 62.385 66.667 0.00 0.00 38.90 4.24
155 156 3.006756 GCACGCTGAGGGTCTGCTA 62.007 63.158 0.00 0.00 38.90 3.49
156 157 1.140589 CACGCTGAGGGTCTGCTAG 59.859 63.158 0.00 0.00 38.90 3.42
157 158 1.000771 ACGCTGAGGGTCTGCTAGA 60.001 57.895 0.00 0.00 38.90 2.43
158 159 1.316706 ACGCTGAGGGTCTGCTAGAC 61.317 60.000 0.00 7.52 44.32 2.59
165 166 4.913126 GTCTGCTAGACCGGTTGG 57.087 61.111 9.42 3.00 39.28 3.77
177 178 2.349755 GGTTGGTGCTTCCGGCTA 59.650 61.111 0.00 0.00 42.39 3.93
178 179 1.745489 GGTTGGTGCTTCCGGCTAG 60.745 63.158 0.00 0.00 42.39 3.42
179 180 2.046314 TTGGTGCTTCCGGCTAGC 60.046 61.111 18.26 18.26 42.39 3.42
180 181 3.622060 TTGGTGCTTCCGGCTAGCC 62.622 63.158 24.75 24.75 42.39 3.93
197 198 4.680237 CGGCGAGTGGCTTGGTGA 62.680 66.667 0.00 0.00 42.94 4.02
198 199 2.281484 GGCGAGTGGCTTGGTGAA 60.281 61.111 0.00 0.00 42.94 3.18
199 200 2.328099 GGCGAGTGGCTTGGTGAAG 61.328 63.158 0.00 0.00 42.94 3.02
210 211 3.976704 TGGTGAAGCCATCGGATTT 57.023 47.368 0.00 0.00 43.61 2.17
211 212 2.214376 TGGTGAAGCCATCGGATTTT 57.786 45.000 0.00 0.00 43.61 1.82
212 213 2.524306 TGGTGAAGCCATCGGATTTTT 58.476 42.857 0.00 0.00 43.61 1.94
226 227 2.103143 TTTTTGGTGTGCGTGGCG 59.897 55.556 0.00 0.00 0.00 5.69
227 228 3.417275 TTTTTGGTGTGCGTGGCGG 62.417 57.895 0.00 0.00 0.00 6.13
241 242 4.382320 GCGGGCGGTCAAGGTACA 62.382 66.667 0.00 0.00 0.00 2.90
242 243 2.582436 CGGGCGGTCAAGGTACAT 59.418 61.111 0.00 0.00 0.00 2.29
243 244 1.520787 CGGGCGGTCAAGGTACATC 60.521 63.158 0.00 0.00 0.00 3.06
244 245 1.600107 GGGCGGTCAAGGTACATCA 59.400 57.895 0.00 0.00 0.00 3.07
245 246 0.180406 GGGCGGTCAAGGTACATCAT 59.820 55.000 0.00 0.00 0.00 2.45
246 247 1.583054 GGCGGTCAAGGTACATCATC 58.417 55.000 0.00 0.00 0.00 2.92
247 248 1.134521 GGCGGTCAAGGTACATCATCA 60.135 52.381 0.00 0.00 0.00 3.07
248 249 2.627945 GCGGTCAAGGTACATCATCAA 58.372 47.619 0.00 0.00 0.00 2.57
249 250 3.206150 GCGGTCAAGGTACATCATCAAT 58.794 45.455 0.00 0.00 0.00 2.57
250 251 3.248602 GCGGTCAAGGTACATCATCAATC 59.751 47.826 0.00 0.00 0.00 2.67
251 252 4.697514 CGGTCAAGGTACATCATCAATCT 58.302 43.478 0.00 0.00 0.00 2.40
252 253 5.118990 CGGTCAAGGTACATCATCAATCTT 58.881 41.667 0.00 0.00 0.00 2.40
253 254 5.007039 CGGTCAAGGTACATCATCAATCTTG 59.993 44.000 0.00 0.00 33.55 3.02
254 255 5.882557 GGTCAAGGTACATCATCAATCTTGT 59.117 40.000 0.00 0.00 33.85 3.16
255 256 7.047891 GGTCAAGGTACATCATCAATCTTGTA 58.952 38.462 0.00 0.00 33.85 2.41
256 257 7.225538 GGTCAAGGTACATCATCAATCTTGTAG 59.774 40.741 0.00 0.00 33.85 2.74
257 258 7.225538 GTCAAGGTACATCATCAATCTTGTAGG 59.774 40.741 0.00 0.00 33.85 3.18
258 259 6.814954 AGGTACATCATCAATCTTGTAGGT 57.185 37.500 0.00 0.00 0.00 3.08
259 260 7.914427 AGGTACATCATCAATCTTGTAGGTA 57.086 36.000 0.00 0.00 0.00 3.08
260 261 7.957002 AGGTACATCATCAATCTTGTAGGTAG 58.043 38.462 0.00 0.00 0.00 3.18
261 262 7.015682 AGGTACATCATCAATCTTGTAGGTAGG 59.984 40.741 0.00 0.00 0.00 3.18
262 263 6.179906 ACATCATCAATCTTGTAGGTAGGG 57.820 41.667 0.00 0.00 0.00 3.53
263 264 4.689612 TCATCAATCTTGTAGGTAGGGC 57.310 45.455 0.00 0.00 0.00 5.19
264 265 3.069586 TCATCAATCTTGTAGGTAGGGCG 59.930 47.826 0.00 0.00 0.00 6.13
265 266 2.742348 TCAATCTTGTAGGTAGGGCGA 58.258 47.619 0.00 0.00 0.00 5.54
266 267 2.429610 TCAATCTTGTAGGTAGGGCGAC 59.570 50.000 0.00 0.00 0.00 5.19
267 268 2.154567 ATCTTGTAGGTAGGGCGACA 57.845 50.000 0.00 0.00 0.00 4.35
268 269 1.927487 TCTTGTAGGTAGGGCGACAA 58.073 50.000 0.00 0.00 0.00 3.18
269 270 2.463752 TCTTGTAGGTAGGGCGACAAT 58.536 47.619 0.00 0.00 31.75 2.71
270 271 2.835764 TCTTGTAGGTAGGGCGACAATT 59.164 45.455 0.00 0.00 31.75 2.32
271 272 2.973694 TGTAGGTAGGGCGACAATTC 57.026 50.000 0.00 0.00 0.00 2.17
272 273 2.463752 TGTAGGTAGGGCGACAATTCT 58.536 47.619 0.00 0.00 0.00 2.40
273 274 2.429610 TGTAGGTAGGGCGACAATTCTC 59.570 50.000 0.00 0.00 0.00 2.87
274 275 0.460311 AGGTAGGGCGACAATTCTCG 59.540 55.000 0.00 0.00 36.70 4.04
275 276 0.175073 GGTAGGGCGACAATTCTCGT 59.825 55.000 5.02 0.00 35.99 4.18
276 277 1.557651 GTAGGGCGACAATTCTCGTC 58.442 55.000 5.02 1.92 37.56 4.20
277 278 1.135199 GTAGGGCGACAATTCTCGTCA 60.135 52.381 9.89 0.00 40.14 4.35
278 279 0.108615 AGGGCGACAATTCTCGTCAG 60.109 55.000 9.89 0.00 40.14 3.51
279 280 1.084370 GGGCGACAATTCTCGTCAGG 61.084 60.000 9.89 0.00 40.14 3.86
280 281 0.108804 GGCGACAATTCTCGTCAGGA 60.109 55.000 2.67 0.00 38.20 3.86
281 282 1.671850 GGCGACAATTCTCGTCAGGAA 60.672 52.381 2.67 0.00 38.20 3.36
282 283 1.656095 GCGACAATTCTCGTCAGGAAG 59.344 52.381 5.02 0.00 35.99 3.46
283 284 2.927014 GCGACAATTCTCGTCAGGAAGT 60.927 50.000 5.02 0.00 35.99 3.01
284 285 3.318017 CGACAATTCTCGTCAGGAAGTT 58.682 45.455 0.00 0.00 32.72 2.66
285 286 3.121944 CGACAATTCTCGTCAGGAAGTTG 59.878 47.826 0.00 0.00 32.72 3.16
286 287 3.403038 ACAATTCTCGTCAGGAAGTTGG 58.597 45.455 0.00 0.00 0.00 3.77
287 288 2.100605 ATTCTCGTCAGGAAGTTGGC 57.899 50.000 0.00 0.00 0.00 4.52
288 289 0.319555 TTCTCGTCAGGAAGTTGGCG 60.320 55.000 0.00 0.00 46.86 5.69
289 290 1.006102 CTCGTCAGGAAGTTGGCGT 60.006 57.895 0.00 0.00 45.73 5.68
290 291 0.600255 CTCGTCAGGAAGTTGGCGTT 60.600 55.000 0.00 0.00 45.73 4.84
291 292 0.878523 TCGTCAGGAAGTTGGCGTTG 60.879 55.000 0.00 0.00 45.73 4.10
292 293 1.841663 CGTCAGGAAGTTGGCGTTGG 61.842 60.000 0.00 0.00 41.02 3.77
293 294 1.228124 TCAGGAAGTTGGCGTTGGG 60.228 57.895 0.00 0.00 0.00 4.12
294 295 1.528309 CAGGAAGTTGGCGTTGGGT 60.528 57.895 0.00 0.00 0.00 4.51
295 296 1.106944 CAGGAAGTTGGCGTTGGGTT 61.107 55.000 0.00 0.00 0.00 4.11
296 297 0.475044 AGGAAGTTGGCGTTGGGTTA 59.525 50.000 0.00 0.00 0.00 2.85
297 298 1.133730 AGGAAGTTGGCGTTGGGTTAA 60.134 47.619 0.00 0.00 0.00 2.01
298 299 1.890489 GGAAGTTGGCGTTGGGTTAAT 59.110 47.619 0.00 0.00 0.00 1.40
299 300 2.094906 GGAAGTTGGCGTTGGGTTAATC 60.095 50.000 0.00 0.00 0.00 1.75
300 301 2.579410 AGTTGGCGTTGGGTTAATCT 57.421 45.000 0.00 0.00 0.00 2.40
301 302 3.706600 AGTTGGCGTTGGGTTAATCTA 57.293 42.857 0.00 0.00 0.00 1.98
302 303 4.230745 AGTTGGCGTTGGGTTAATCTAT 57.769 40.909 0.00 0.00 0.00 1.98
303 304 3.945285 AGTTGGCGTTGGGTTAATCTATG 59.055 43.478 0.00 0.00 0.00 2.23
304 305 2.294074 TGGCGTTGGGTTAATCTATGC 58.706 47.619 0.00 0.00 0.00 3.14
305 306 2.294074 GGCGTTGGGTTAATCTATGCA 58.706 47.619 0.00 0.00 0.00 3.96
306 307 2.884639 GGCGTTGGGTTAATCTATGCAT 59.115 45.455 3.79 3.79 0.00 3.96
307 308 3.317993 GGCGTTGGGTTAATCTATGCATT 59.682 43.478 3.54 0.00 0.00 3.56
308 309 4.202111 GGCGTTGGGTTAATCTATGCATTT 60.202 41.667 3.54 0.00 0.00 2.32
309 310 5.009210 GGCGTTGGGTTAATCTATGCATTTA 59.991 40.000 3.54 0.00 0.00 1.40
310 311 6.294508 GGCGTTGGGTTAATCTATGCATTTAT 60.295 38.462 3.54 0.00 0.00 1.40
311 312 7.145323 GCGTTGGGTTAATCTATGCATTTATT 58.855 34.615 3.54 7.93 0.00 1.40
312 313 7.651704 GCGTTGGGTTAATCTATGCATTTATTT 59.348 33.333 3.54 0.00 0.00 1.40
313 314 9.528018 CGTTGGGTTAATCTATGCATTTATTTT 57.472 29.630 3.54 0.00 0.00 1.82
358 359 8.565896 TGTAATAAAGATGGCTATATGCAAGG 57.434 34.615 0.00 0.00 45.15 3.61
359 360 6.521151 AATAAAGATGGCTATATGCAAGGC 57.479 37.500 3.58 3.58 45.15 4.35
360 361 2.503895 AGATGGCTATATGCAAGGCC 57.496 50.000 7.87 10.87 45.15 5.19
361 362 1.089920 GATGGCTATATGCAAGGCCG 58.910 55.000 7.87 0.00 46.72 6.13
362 363 0.322816 ATGGCTATATGCAAGGCCGG 60.323 55.000 7.87 0.00 46.72 6.13
363 364 1.374947 GGCTATATGCAAGGCCGGA 59.625 57.895 5.05 0.00 45.15 5.14
364 365 0.674895 GGCTATATGCAAGGCCGGAG 60.675 60.000 5.05 0.00 45.15 4.63
365 366 0.035458 GCTATATGCAAGGCCGGAGT 59.965 55.000 5.05 0.00 42.31 3.85
366 367 1.543429 GCTATATGCAAGGCCGGAGTT 60.543 52.381 5.05 0.00 42.31 3.01
367 368 2.289444 GCTATATGCAAGGCCGGAGTTA 60.289 50.000 5.05 0.00 42.31 2.24
368 369 3.805807 GCTATATGCAAGGCCGGAGTTAA 60.806 47.826 5.05 0.00 42.31 2.01
369 370 3.508845 ATATGCAAGGCCGGAGTTAAT 57.491 42.857 5.05 0.00 0.00 1.40
370 371 1.680338 ATGCAAGGCCGGAGTTAATC 58.320 50.000 5.05 0.00 0.00 1.75
371 372 0.393808 TGCAAGGCCGGAGTTAATCC 60.394 55.000 5.05 0.00 45.64 3.01
422 423 8.939201 AACTGTGAAGACTAGAATATGTCATG 57.061 34.615 0.00 0.00 35.81 3.07
423 424 8.072321 ACTGTGAAGACTAGAATATGTCATGT 57.928 34.615 0.00 0.00 35.81 3.21
424 425 8.535335 ACTGTGAAGACTAGAATATGTCATGTT 58.465 33.333 0.00 0.00 35.81 2.71
425 426 9.376075 CTGTGAAGACTAGAATATGTCATGTTT 57.624 33.333 0.00 0.00 35.81 2.83
426 427 9.725019 TGTGAAGACTAGAATATGTCATGTTTT 57.275 29.630 0.00 0.00 35.81 2.43
428 429 9.942850 TGAAGACTAGAATATGTCATGTTTTCA 57.057 29.630 0.00 0.00 35.03 2.69
458 459 8.519799 TTTTTCCGGCTCTTGATTATATTTCT 57.480 30.769 0.00 0.00 0.00 2.52
459 460 8.519799 TTTTCCGGCTCTTGATTATATTTCTT 57.480 30.769 0.00 0.00 0.00 2.52
460 461 7.730364 TTCCGGCTCTTGATTATATTTCTTC 57.270 36.000 0.00 0.00 0.00 2.87
461 462 6.231211 TCCGGCTCTTGATTATATTTCTTCC 58.769 40.000 0.00 0.00 0.00 3.46
462 463 6.043243 TCCGGCTCTTGATTATATTTCTTCCT 59.957 38.462 0.00 0.00 0.00 3.36
463 464 6.712547 CCGGCTCTTGATTATATTTCTTCCTT 59.287 38.462 0.00 0.00 0.00 3.36
464 465 7.878127 CCGGCTCTTGATTATATTTCTTCCTTA 59.122 37.037 0.00 0.00 0.00 2.69
465 466 8.930760 CGGCTCTTGATTATATTTCTTCCTTAG 58.069 37.037 0.00 0.00 0.00 2.18
466 467 9.785982 GGCTCTTGATTATATTTCTTCCTTAGT 57.214 33.333 0.00 0.00 0.00 2.24
490 491 8.372459 AGTTGAGGTGTAATGTAAAGTGACATA 58.628 33.333 0.00 0.00 39.16 2.29
492 493 7.672240 TGAGGTGTAATGTAAAGTGACATACA 58.328 34.615 4.17 4.17 39.16 2.29
518 519 5.125356 TGTCAGATGTGTTGTTGTTCAGAT 58.875 37.500 0.00 0.00 0.00 2.90
521 522 3.254166 AGATGTGTTGTTGTTCAGATGGC 59.746 43.478 0.00 0.00 0.00 4.40
559 560 2.807967 TGTCGGTCAGAGCAAAGAATTG 59.192 45.455 0.00 0.00 39.65 2.32
644 645 5.395657 CCACTGATCCACAGATAAGTAAGCA 60.396 44.000 0.00 0.00 41.66 3.91
646 647 5.282055 TGATCCACAGATAAGTAAGCAGG 57.718 43.478 0.00 0.00 30.90 4.85
665 678 5.104776 AGCAGGTGATACATACAGTCACAAT 60.105 40.000 7.00 0.00 43.01 2.71
671 684 8.604035 GGTGATACATACAGTCACAATTACTTG 58.396 37.037 7.00 0.00 43.01 3.16
686 699 7.279981 CACAATTACTTGGCTGCTAATACTACA 59.720 37.037 0.00 0.00 36.64 2.74
705 718 6.045318 ACTACATTGGAATCTCATTCACTCG 58.955 40.000 0.00 0.00 41.03 4.18
763 776 4.488879 GTTGACAGGAATGCCAAGATTTC 58.511 43.478 0.00 0.00 36.29 2.17
767 780 5.047802 TGACAGGAATGCCAAGATTTCTTTC 60.048 40.000 0.00 0.00 36.29 2.62
768 781 4.834496 ACAGGAATGCCAAGATTTCTTTCA 59.166 37.500 0.00 0.00 36.29 2.69
770 783 5.047519 CAGGAATGCCAAGATTTCTTTCACT 60.048 40.000 0.00 0.00 36.29 3.41
771 784 6.151648 CAGGAATGCCAAGATTTCTTTCACTA 59.848 38.462 0.00 0.00 36.29 2.74
772 785 6.721208 AGGAATGCCAAGATTTCTTTCACTAA 59.279 34.615 0.00 0.00 36.29 2.24
774 787 7.329471 GGAATGCCAAGATTTCTTTCACTAAAC 59.671 37.037 0.00 0.00 33.11 2.01
775 788 6.084326 TGCCAAGATTTCTTTCACTAAACC 57.916 37.500 0.00 0.00 33.11 3.27
776 789 5.596361 TGCCAAGATTTCTTTCACTAAACCA 59.404 36.000 0.00 0.00 33.11 3.67
777 790 6.097554 TGCCAAGATTTCTTTCACTAAACCAA 59.902 34.615 0.00 0.00 33.11 3.67
812 825 8.642908 AACAGCTGTTTAACAAGAAATTTACC 57.357 30.769 26.36 0.00 33.93 2.85
814 827 6.915843 CAGCTGTTTAACAAGAAATTTACCGT 59.084 34.615 5.25 0.00 0.00 4.83
823 875 5.244178 ACAAGAAATTTACCGTGCCCAAATA 59.756 36.000 0.00 0.00 0.00 1.40
830 882 5.821516 TTACCGTGCCCAAATATTACAAG 57.178 39.130 0.00 0.00 0.00 3.16
833 885 3.066203 CCGTGCCCAAATATTACAAGACC 59.934 47.826 0.00 0.00 0.00 3.85
835 887 4.201910 CGTGCCCAAATATTACAAGACCAG 60.202 45.833 0.00 0.00 0.00 4.00
838 890 4.342092 GCCCAAATATTACAAGACCAGCAT 59.658 41.667 0.00 0.00 0.00 3.79
842 894 7.198390 CCAAATATTACAAGACCAGCATCAAG 58.802 38.462 0.00 0.00 0.00 3.02
843 895 7.067372 CCAAATATTACAAGACCAGCATCAAGA 59.933 37.037 0.00 0.00 0.00 3.02
844 896 7.559590 AATATTACAAGACCAGCATCAAGAC 57.440 36.000 0.00 0.00 0.00 3.01
845 897 2.936919 ACAAGACCAGCATCAAGACA 57.063 45.000 0.00 0.00 0.00 3.41
846 898 2.498167 ACAAGACCAGCATCAAGACAC 58.502 47.619 0.00 0.00 0.00 3.67
847 899 1.808945 CAAGACCAGCATCAAGACACC 59.191 52.381 0.00 0.00 0.00 4.16
848 900 1.059098 AGACCAGCATCAAGACACCA 58.941 50.000 0.00 0.00 0.00 4.17
849 901 1.421268 AGACCAGCATCAAGACACCAA 59.579 47.619 0.00 0.00 0.00 3.67
850 902 1.537202 GACCAGCATCAAGACACCAAC 59.463 52.381 0.00 0.00 0.00 3.77
851 903 0.518636 CCAGCATCAAGACACCAACG 59.481 55.000 0.00 0.00 0.00 4.10
888 940 2.664698 GCAAAACCGATGAAACGAGACC 60.665 50.000 0.00 0.00 35.09 3.85
890 942 0.389426 AACCGATGAAACGAGACCGG 60.389 55.000 0.00 0.00 42.30 5.28
904 956 0.373716 GACCGGATTGATTGACGTGC 59.626 55.000 9.46 0.00 0.00 5.34
928 980 3.938963 CGGTTACATCAGCTAATTGTGGT 59.061 43.478 5.81 0.00 0.00 4.16
929 981 4.034048 CGGTTACATCAGCTAATTGTGGTC 59.966 45.833 5.81 0.00 0.00 4.02
951 1003 8.961634 TGGTCCTATATAAAGAAGATCGATCAG 58.038 37.037 26.47 10.97 0.00 2.90
966 1020 2.159128 CGATCAGCAGATCCTCACAAGT 60.159 50.000 12.95 0.00 46.42 3.16
973 1027 5.064452 CAGCAGATCCTCACAAGTACAAATC 59.936 44.000 0.00 0.00 0.00 2.17
995 1057 1.453379 GATCTGCATGCAGCCTGGT 60.453 57.895 37.48 21.84 44.83 4.00
998 1060 1.822613 CTGCATGCAGCCTGGTAGG 60.823 63.158 33.18 9.09 44.83 3.18
1117 1182 2.912025 ACAAGCCCACAAAGCCCG 60.912 61.111 0.00 0.00 0.00 6.13
1320 3876 2.032681 GGCGGCAAGTCCTTCTGT 59.967 61.111 3.07 0.00 0.00 3.41
1335 3891 0.396435 TCTGTGACAACCGCTTCCAT 59.604 50.000 0.00 0.00 0.00 3.41
1371 3927 3.950232 GTGGCTCTATCCACGGGA 58.050 61.111 0.00 0.00 45.95 5.14
1485 4043 4.287781 TCGGTGAACGGCTGCGAA 62.288 61.111 0.00 0.00 44.45 4.70
1649 4212 5.331309 CCTCGCATTAATCTACACGTAAACG 60.331 44.000 0.04 0.04 46.33 3.60
1668 4231 0.632294 GTAGAGGGACTGAGGGAGGT 59.368 60.000 0.00 0.00 41.55 3.85
1701 4264 0.592247 GCAGCGTTTGGTCTGTGTTG 60.592 55.000 0.00 0.00 33.09 3.33
1808 4373 1.892474 TCCCAAGTTTATGTGCTTGCC 59.108 47.619 0.00 0.00 40.34 4.52
1867 4435 6.826741 GTGTAAGGCCAATCTATTTTCACCTA 59.173 38.462 5.01 0.00 0.00 3.08
1869 4437 8.058847 TGTAAGGCCAATCTATTTTCACCTATT 58.941 33.333 5.01 0.00 0.00 1.73
1877 4445 2.715737 TTTTCACCTATTTGCACGGC 57.284 45.000 0.00 0.00 0.00 5.68
1888 4456 3.350612 GCACGGCGCAGTTGGTTA 61.351 61.111 11.46 0.00 41.79 2.85
1897 4465 3.244345 GGCGCAGTTGGTTAAAAGAAAAC 59.756 43.478 10.83 0.00 0.00 2.43
1945 4513 7.445945 ACCAGATAAGTTTAGGATGCTCATAC 58.554 38.462 0.00 0.00 0.00 2.39
1946 4514 6.876257 CCAGATAAGTTTAGGATGCTCATACC 59.124 42.308 0.00 0.00 0.00 2.73
1954 4522 0.319900 GATGCTCATACCACGCGGAT 60.320 55.000 12.47 0.00 35.59 4.18
1992 4560 2.674033 GACTGCCAGGCATGTGCA 60.674 61.111 16.64 12.69 44.36 4.57
1998 4566 1.002990 CCAGGCATGTGCAGTCAGA 60.003 57.895 7.36 0.00 44.36 3.27
1999 4567 1.303799 CCAGGCATGTGCAGTCAGAC 61.304 60.000 7.36 0.00 44.36 3.51
2000 4568 1.375140 AGGCATGTGCAGTCAGACG 60.375 57.895 7.36 0.00 44.36 4.18
2045 4613 1.503542 CACGCTGGAGAAACATGGC 59.496 57.895 0.00 0.00 0.00 4.40
2091 4659 1.883021 CAAACGATTGGGTGAGGCC 59.117 57.895 0.00 0.00 32.69 5.19
2093 4662 0.178975 AAACGATTGGGTGAGGCCAA 60.179 50.000 5.01 0.00 39.65 4.52
2105 4674 0.804989 GAGGCCAAGGAACATTCGTG 59.195 55.000 5.01 0.00 0.00 4.35
2118 4687 9.981114 AAGGAACATTCGTGAAATAAAATTTCT 57.019 25.926 12.25 0.00 0.00 2.52
2119 4689 9.410556 AGGAACATTCGTGAAATAAAATTTCTG 57.589 29.630 12.25 5.78 0.00 3.02
2155 4726 4.332828 AGCAAAACTTTTACGGCCTAGAT 58.667 39.130 0.00 0.00 0.00 1.98
2172 4744 7.973388 CGGCCTAGATAAGAGATCATAAAAGAG 59.027 40.741 0.00 0.00 0.00 2.85
2189 4761 9.903682 CATAAAAGAGTAATAATTCATGCCAGG 57.096 33.333 0.00 0.00 0.00 4.45
2210 4782 2.265467 GACCGGCTAGGAATTGGGCA 62.265 60.000 0.00 0.00 45.00 5.36
2213 4785 1.615262 GGCTAGGAATTGGGCAGGT 59.385 57.895 0.00 0.00 32.69 4.00
2250 4879 2.029221 GCCCGCTCGTCCTTATCC 59.971 66.667 0.00 0.00 0.00 2.59
2258 4887 3.712187 GCTCGTCCTTATCCTTTCTCAG 58.288 50.000 0.00 0.00 0.00 3.35
2259 4888 3.712187 CTCGTCCTTATCCTTTCTCAGC 58.288 50.000 0.00 0.00 0.00 4.26
2260 4889 2.099263 TCGTCCTTATCCTTTCTCAGCG 59.901 50.000 0.00 0.00 0.00 5.18
2270 5174 1.196354 CTTTCTCAGCGCAACTCCTTG 59.804 52.381 11.47 0.00 0.00 3.61
2279 5183 1.527034 GCAACTCCTTGTGCATCTGA 58.473 50.000 0.00 0.00 0.00 3.27
2342 5246 4.528596 GCACCCTACCACTCATATCTACAT 59.471 45.833 0.00 0.00 0.00 2.29
2423 5387 9.591792 GTTCTACTTACATTAAACTTATCGGGT 57.408 33.333 0.00 0.00 0.00 5.28
2440 5404 5.021033 TCGGGTATTTTACTTGGCGAATA 57.979 39.130 0.00 0.00 0.00 1.75
2465 5433 0.693622 TCACCCCAATCGTTTGCCTA 59.306 50.000 0.47 0.00 0.00 3.93
2472 5440 2.351350 CCAATCGTTTGCCTACCACAAC 60.351 50.000 0.47 0.00 0.00 3.32
2544 5525 0.899019 TAGCCGCACATGTCTGGTAA 59.101 50.000 13.09 1.34 0.00 2.85
2570 5557 4.733371 TCGAGCGATGTTGCGGCA 62.733 61.111 0.00 0.00 40.67 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.075426 AAACAACGCCTGCCTCTTGC 62.075 55.000 0.00 0.00 41.77 4.01
6 7 0.318107 CAAACAACGCCTGCCTCTTG 60.318 55.000 0.00 0.00 0.00 3.02
7 8 1.455383 CCAAACAACGCCTGCCTCTT 61.455 55.000 0.00 0.00 0.00 2.85
8 9 1.898574 CCAAACAACGCCTGCCTCT 60.899 57.895 0.00 0.00 0.00 3.69
9 10 2.644992 CCAAACAACGCCTGCCTC 59.355 61.111 0.00 0.00 0.00 4.70
10 11 3.605664 GCCAAACAACGCCTGCCT 61.606 61.111 0.00 0.00 0.00 4.75
11 12 4.999939 CGCCAAACAACGCCTGCC 63.000 66.667 0.00 0.00 0.00 4.85
12 13 4.264638 ACGCCAAACAACGCCTGC 62.265 61.111 0.00 0.00 0.00 4.85
13 14 2.051345 GACGCCAAACAACGCCTG 60.051 61.111 0.00 0.00 0.00 4.85
14 15 1.896660 ATGACGCCAAACAACGCCT 60.897 52.632 0.00 0.00 0.00 5.52
15 16 1.729131 CATGACGCCAAACAACGCC 60.729 57.895 0.00 0.00 0.00 5.68
16 17 1.729131 CCATGACGCCAAACAACGC 60.729 57.895 0.00 0.00 0.00 4.84
17 18 0.660005 CACCATGACGCCAAACAACG 60.660 55.000 0.00 0.00 0.00 4.10
18 19 0.318614 CCACCATGACGCCAAACAAC 60.319 55.000 0.00 0.00 0.00 3.32
19 20 2.037053 CCACCATGACGCCAAACAA 58.963 52.632 0.00 0.00 0.00 2.83
20 21 2.560119 GCCACCATGACGCCAAACA 61.560 57.895 0.00 0.00 0.00 2.83
21 22 2.258286 GCCACCATGACGCCAAAC 59.742 61.111 0.00 0.00 0.00 2.93
22 23 3.361158 CGCCACCATGACGCCAAA 61.361 61.111 0.00 0.00 0.00 3.28
23 24 4.634703 ACGCCACCATGACGCCAA 62.635 61.111 0.00 0.00 0.00 4.52
26 27 3.047280 TTGACGCCACCATGACGC 61.047 61.111 0.00 0.00 0.00 5.19
27 28 1.900585 CTGTTGACGCCACCATGACG 61.901 60.000 0.00 0.00 0.00 4.35
28 29 1.868997 CTGTTGACGCCACCATGAC 59.131 57.895 0.00 0.00 0.00 3.06
29 30 1.965930 GCTGTTGACGCCACCATGA 60.966 57.895 0.00 0.00 0.00 3.07
30 31 2.191354 CTGCTGTTGACGCCACCATG 62.191 60.000 0.00 0.00 0.00 3.66
31 32 1.968017 CTGCTGTTGACGCCACCAT 60.968 57.895 0.00 0.00 0.00 3.55
32 33 2.591429 CTGCTGTTGACGCCACCA 60.591 61.111 0.00 0.00 0.00 4.17
33 34 1.845809 CTTCTGCTGTTGACGCCACC 61.846 60.000 0.00 0.00 0.00 4.61
34 35 1.571460 CTTCTGCTGTTGACGCCAC 59.429 57.895 0.00 0.00 0.00 5.01
35 36 1.597854 CCTTCTGCTGTTGACGCCA 60.598 57.895 0.00 0.00 0.00 5.69
36 37 2.328099 CCCTTCTGCTGTTGACGCC 61.328 63.158 0.00 0.00 0.00 5.68
37 38 1.569479 GACCCTTCTGCTGTTGACGC 61.569 60.000 0.00 0.00 0.00 5.19
38 39 0.034059 AGACCCTTCTGCTGTTGACG 59.966 55.000 0.00 0.00 0.00 4.35
39 40 1.517242 CAGACCCTTCTGCTGTTGAC 58.483 55.000 0.00 0.00 42.99 3.18
48 49 1.558756 CTGATCTTGCCAGACCCTTCT 59.441 52.381 0.00 0.00 33.65 2.85
49 50 1.280421 ACTGATCTTGCCAGACCCTTC 59.720 52.381 0.00 0.00 35.69 3.46
50 51 1.004044 CACTGATCTTGCCAGACCCTT 59.996 52.381 0.00 0.00 35.69 3.95
51 52 0.617413 CACTGATCTTGCCAGACCCT 59.383 55.000 0.00 0.00 35.69 4.34
52 53 1.028868 GCACTGATCTTGCCAGACCC 61.029 60.000 8.29 0.00 35.69 4.46
53 54 0.321919 TGCACTGATCTTGCCAGACC 60.322 55.000 14.87 0.00 39.39 3.85
54 55 1.747709 ATGCACTGATCTTGCCAGAC 58.252 50.000 14.87 0.00 39.39 3.51
55 56 2.089201 CAATGCACTGATCTTGCCAGA 58.911 47.619 14.87 0.00 39.39 3.86
56 57 2.089201 TCAATGCACTGATCTTGCCAG 58.911 47.619 14.87 7.03 39.39 4.85
57 58 2.203470 TCAATGCACTGATCTTGCCA 57.797 45.000 14.87 6.13 39.39 4.92
58 59 3.444916 CAATCAATGCACTGATCTTGCC 58.555 45.455 11.64 1.57 39.39 4.52
71 72 3.243434 GGCATCTTCAGGAGCAATCAATG 60.243 47.826 0.00 0.00 0.00 2.82
72 73 2.957006 GGCATCTTCAGGAGCAATCAAT 59.043 45.455 0.00 0.00 0.00 2.57
73 74 2.372264 GGCATCTTCAGGAGCAATCAA 58.628 47.619 0.00 0.00 0.00 2.57
74 75 1.744798 CGGCATCTTCAGGAGCAATCA 60.745 52.381 0.00 0.00 0.00 2.57
75 76 0.942962 CGGCATCTTCAGGAGCAATC 59.057 55.000 0.00 0.00 0.00 2.67
76 77 1.099879 GCGGCATCTTCAGGAGCAAT 61.100 55.000 0.00 0.00 0.00 3.56
77 78 1.746615 GCGGCATCTTCAGGAGCAA 60.747 57.895 0.00 0.00 0.00 3.91
78 79 2.124983 GCGGCATCTTCAGGAGCA 60.125 61.111 0.00 0.00 0.00 4.26
79 80 2.124983 TGCGGCATCTTCAGGAGC 60.125 61.111 0.00 0.00 0.00 4.70
80 81 0.106335 ATCTGCGGCATCTTCAGGAG 59.894 55.000 1.75 0.00 0.00 3.69
81 82 1.413118 TATCTGCGGCATCTTCAGGA 58.587 50.000 1.75 0.00 0.00 3.86
82 83 2.245159 TTATCTGCGGCATCTTCAGG 57.755 50.000 1.75 0.00 0.00 3.86
83 84 2.547211 CCTTTATCTGCGGCATCTTCAG 59.453 50.000 1.75 0.00 0.00 3.02
84 85 2.564771 CCTTTATCTGCGGCATCTTCA 58.435 47.619 1.75 0.00 0.00 3.02
85 86 1.265365 GCCTTTATCTGCGGCATCTTC 59.735 52.381 1.75 0.00 43.25 2.87
86 87 1.312815 GCCTTTATCTGCGGCATCTT 58.687 50.000 1.75 0.00 43.25 2.40
87 88 0.882042 CGCCTTTATCTGCGGCATCT 60.882 55.000 1.75 0.00 46.65 2.90
88 89 1.571460 CGCCTTTATCTGCGGCATC 59.429 57.895 1.75 0.00 46.65 3.91
89 90 3.736483 CGCCTTTATCTGCGGCAT 58.264 55.556 1.75 0.00 46.65 4.40
94 95 2.823829 CGTGGCCGCCTTTATCTGC 61.824 63.158 11.56 0.00 0.00 4.26
95 96 2.180204 CCGTGGCCGCCTTTATCTG 61.180 63.158 11.56 0.00 0.00 2.90
96 97 1.696097 ATCCGTGGCCGCCTTTATCT 61.696 55.000 11.56 0.00 0.00 1.98
97 98 0.818040 AATCCGTGGCCGCCTTTATC 60.818 55.000 11.56 0.00 0.00 1.75
98 99 0.818040 GAATCCGTGGCCGCCTTTAT 60.818 55.000 11.56 0.00 0.00 1.40
99 100 1.450669 GAATCCGTGGCCGCCTTTA 60.451 57.895 11.56 0.00 0.00 1.85
100 101 1.906105 TAGAATCCGTGGCCGCCTTT 61.906 55.000 11.56 1.38 0.00 3.11
101 102 2.363975 TAGAATCCGTGGCCGCCTT 61.364 57.895 11.56 1.57 0.00 4.35
102 103 2.762459 TAGAATCCGTGGCCGCCT 60.762 61.111 11.56 3.83 0.00 5.52
103 104 2.588034 GTAGAATCCGTGGCCGCC 60.588 66.667 11.56 1.04 0.00 6.13
104 105 1.883084 CTGTAGAATCCGTGGCCGC 60.883 63.158 6.11 6.11 0.00 6.53
105 106 1.883084 GCTGTAGAATCCGTGGCCG 60.883 63.158 0.00 0.00 0.00 6.13
106 107 0.179045 ATGCTGTAGAATCCGTGGCC 60.179 55.000 0.00 0.00 0.00 5.36
107 108 0.940126 CATGCTGTAGAATCCGTGGC 59.060 55.000 0.00 0.00 0.00 5.01
108 109 0.940126 GCATGCTGTAGAATCCGTGG 59.060 55.000 11.37 0.00 0.00 4.94
109 110 1.328680 GTGCATGCTGTAGAATCCGTG 59.671 52.381 20.33 0.00 0.00 4.94
110 111 1.066215 TGTGCATGCTGTAGAATCCGT 60.066 47.619 20.33 0.00 0.00 4.69
111 112 1.328680 GTGTGCATGCTGTAGAATCCG 59.671 52.381 20.33 0.00 0.00 4.18
112 113 1.328680 CGTGTGCATGCTGTAGAATCC 59.671 52.381 20.33 0.00 0.00 3.01
113 114 1.267732 GCGTGTGCATGCTGTAGAATC 60.268 52.381 20.33 0.33 42.15 2.52
114 115 0.729116 GCGTGTGCATGCTGTAGAAT 59.271 50.000 20.33 0.00 42.15 2.40
115 116 1.625759 CGCGTGTGCATGCTGTAGAA 61.626 55.000 20.33 0.00 42.97 2.10
116 117 2.094066 CGCGTGTGCATGCTGTAGA 61.094 57.895 20.33 0.00 42.97 2.59
117 118 2.396861 CGCGTGTGCATGCTGTAG 59.603 61.111 20.33 9.18 42.97 2.74
118 119 3.117812 CCGCGTGTGCATGCTGTA 61.118 61.111 20.33 1.88 42.97 2.74
120 121 4.746951 CACCGCGTGTGCATGCTG 62.747 66.667 20.33 9.92 42.97 4.41
134 135 4.008933 AGACCCTCAGCGTGCACC 62.009 66.667 12.15 4.10 0.00 5.01
135 136 2.740055 CAGACCCTCAGCGTGCAC 60.740 66.667 6.82 6.82 0.00 4.57
136 137 4.687215 GCAGACCCTCAGCGTGCA 62.687 66.667 0.00 0.00 34.18 4.57
137 138 2.897641 CTAGCAGACCCTCAGCGTGC 62.898 65.000 0.00 0.00 33.83 5.34
138 139 1.140589 CTAGCAGACCCTCAGCGTG 59.859 63.158 0.00 0.00 33.83 5.34
139 140 1.000771 TCTAGCAGACCCTCAGCGT 60.001 57.895 0.00 0.00 33.83 5.07
140 141 1.435515 GTCTAGCAGACCCTCAGCG 59.564 63.158 5.33 0.00 39.28 5.18
148 149 0.389948 CACCAACCGGTCTAGCAGAC 60.390 60.000 8.04 7.52 44.71 3.51
149 150 1.972198 CACCAACCGGTCTAGCAGA 59.028 57.895 8.04 0.00 44.71 4.26
150 151 1.741770 GCACCAACCGGTCTAGCAG 60.742 63.158 8.04 0.00 44.71 4.24
151 152 1.764571 AAGCACCAACCGGTCTAGCA 61.765 55.000 8.04 0.00 44.71 3.49
152 153 1.003718 AAGCACCAACCGGTCTAGC 60.004 57.895 8.04 10.52 44.71 3.42
153 154 0.391263 GGAAGCACCAACCGGTCTAG 60.391 60.000 8.04 1.50 44.71 2.43
154 155 1.675219 GGAAGCACCAACCGGTCTA 59.325 57.895 8.04 0.00 44.71 2.59
155 156 2.430367 GGAAGCACCAACCGGTCT 59.570 61.111 8.04 0.00 44.71 3.85
156 157 3.047877 CGGAAGCACCAACCGGTC 61.048 66.667 8.04 0.00 44.71 4.79
180 181 4.680237 TCACCAAGCCACTCGCCG 62.680 66.667 0.00 0.00 38.78 6.46
181 182 2.281484 TTCACCAAGCCACTCGCC 60.281 61.111 0.00 0.00 38.78 5.54
182 183 3.257933 CTTCACCAAGCCACTCGC 58.742 61.111 0.00 0.00 37.98 5.03
209 210 2.103143 CGCCACGCACACCAAAAA 59.897 55.556 0.00 0.00 0.00 1.94
210 211 3.893763 CCGCCACGCACACCAAAA 61.894 61.111 0.00 0.00 0.00 2.44
224 225 3.675619 ATGTACCTTGACCGCCCGC 62.676 63.158 0.00 0.00 0.00 6.13
225 226 1.520787 GATGTACCTTGACCGCCCG 60.521 63.158 0.00 0.00 0.00 6.13
226 227 0.180406 ATGATGTACCTTGACCGCCC 59.820 55.000 0.00 0.00 0.00 6.13
227 228 1.134521 TGATGATGTACCTTGACCGCC 60.135 52.381 0.00 0.00 0.00 6.13
228 229 2.309528 TGATGATGTACCTTGACCGC 57.690 50.000 0.00 0.00 0.00 5.68
229 230 4.697514 AGATTGATGATGTACCTTGACCG 58.302 43.478 0.00 0.00 0.00 4.79
230 231 5.882557 ACAAGATTGATGATGTACCTTGACC 59.117 40.000 0.00 0.00 35.06 4.02
231 232 6.992063 ACAAGATTGATGATGTACCTTGAC 57.008 37.500 0.00 0.00 35.06 3.18
232 233 7.092891 ACCTACAAGATTGATGATGTACCTTGA 60.093 37.037 0.00 0.00 35.06 3.02
233 234 7.050377 ACCTACAAGATTGATGATGTACCTTG 58.950 38.462 0.00 0.00 36.54 3.61
234 235 7.200434 ACCTACAAGATTGATGATGTACCTT 57.800 36.000 0.00 0.00 0.00 3.50
235 236 6.814954 ACCTACAAGATTGATGATGTACCT 57.185 37.500 0.00 0.00 0.00 3.08
236 237 7.155328 CCTACCTACAAGATTGATGATGTACC 58.845 42.308 0.00 0.00 0.00 3.34
237 238 7.155328 CCCTACCTACAAGATTGATGATGTAC 58.845 42.308 0.00 0.00 0.00 2.90
238 239 6.239600 GCCCTACCTACAAGATTGATGATGTA 60.240 42.308 0.00 0.00 0.00 2.29
239 240 5.455326 GCCCTACCTACAAGATTGATGATGT 60.455 44.000 0.00 0.00 0.00 3.06
240 241 4.999950 GCCCTACCTACAAGATTGATGATG 59.000 45.833 0.00 0.00 0.00 3.07
241 242 4.262635 CGCCCTACCTACAAGATTGATGAT 60.263 45.833 0.00 0.00 0.00 2.45
242 243 3.069586 CGCCCTACCTACAAGATTGATGA 59.930 47.826 0.00 0.00 0.00 2.92
243 244 3.069586 TCGCCCTACCTACAAGATTGATG 59.930 47.826 0.00 0.00 0.00 3.07
244 245 3.069729 GTCGCCCTACCTACAAGATTGAT 59.930 47.826 0.00 0.00 0.00 2.57
245 246 2.429610 GTCGCCCTACCTACAAGATTGA 59.570 50.000 0.00 0.00 0.00 2.57
246 247 2.167693 TGTCGCCCTACCTACAAGATTG 59.832 50.000 0.00 0.00 0.00 2.67
247 248 2.463752 TGTCGCCCTACCTACAAGATT 58.536 47.619 0.00 0.00 0.00 2.40
248 249 2.154567 TGTCGCCCTACCTACAAGAT 57.845 50.000 0.00 0.00 0.00 2.40
249 250 1.927487 TTGTCGCCCTACCTACAAGA 58.073 50.000 0.00 0.00 0.00 3.02
250 251 2.981859 ATTGTCGCCCTACCTACAAG 57.018 50.000 0.00 0.00 35.48 3.16
251 252 2.835764 AGAATTGTCGCCCTACCTACAA 59.164 45.455 0.00 0.00 36.37 2.41
252 253 2.429610 GAGAATTGTCGCCCTACCTACA 59.570 50.000 0.00 0.00 0.00 2.74
253 254 2.543238 CGAGAATTGTCGCCCTACCTAC 60.543 54.545 12.37 0.00 32.22 3.18
254 255 1.679680 CGAGAATTGTCGCCCTACCTA 59.320 52.381 12.37 0.00 32.22 3.08
255 256 0.460311 CGAGAATTGTCGCCCTACCT 59.540 55.000 12.37 0.00 32.22 3.08
256 257 0.175073 ACGAGAATTGTCGCCCTACC 59.825 55.000 23.37 0.00 44.06 3.18
257 258 1.557651 GACGAGAATTGTCGCCCTAC 58.442 55.000 23.37 7.70 44.06 3.18
259 260 4.913126 GACGAGAATTGTCGCCCT 57.087 55.556 23.37 5.62 44.06 5.19
265 266 3.403038 CCAACTTCCTGACGAGAATTGT 58.597 45.455 0.00 0.00 33.40 2.71
266 267 2.160417 GCCAACTTCCTGACGAGAATTG 59.840 50.000 0.00 0.00 0.00 2.32
267 268 2.427506 GCCAACTTCCTGACGAGAATT 58.572 47.619 0.00 0.00 0.00 2.17
268 269 1.673033 CGCCAACTTCCTGACGAGAAT 60.673 52.381 0.00 0.00 0.00 2.40
269 270 0.319555 CGCCAACTTCCTGACGAGAA 60.320 55.000 0.00 0.00 0.00 2.87
270 271 1.289066 CGCCAACTTCCTGACGAGA 59.711 57.895 0.00 0.00 0.00 4.04
271 272 0.600255 AACGCCAACTTCCTGACGAG 60.600 55.000 0.00 0.00 0.00 4.18
272 273 0.878523 CAACGCCAACTTCCTGACGA 60.879 55.000 0.00 0.00 0.00 4.20
273 274 1.569493 CAACGCCAACTTCCTGACG 59.431 57.895 0.00 0.00 0.00 4.35
274 275 1.515521 CCCAACGCCAACTTCCTGAC 61.516 60.000 0.00 0.00 0.00 3.51
275 276 1.228124 CCCAACGCCAACTTCCTGA 60.228 57.895 0.00 0.00 0.00 3.86
276 277 1.106944 AACCCAACGCCAACTTCCTG 61.107 55.000 0.00 0.00 0.00 3.86
277 278 0.475044 TAACCCAACGCCAACTTCCT 59.525 50.000 0.00 0.00 0.00 3.36
278 279 1.320507 TTAACCCAACGCCAACTTCC 58.679 50.000 0.00 0.00 0.00 3.46
279 280 2.817844 AGATTAACCCAACGCCAACTTC 59.182 45.455 0.00 0.00 0.00 3.01
280 281 2.871453 AGATTAACCCAACGCCAACTT 58.129 42.857 0.00 0.00 0.00 2.66
281 282 2.579410 AGATTAACCCAACGCCAACT 57.421 45.000 0.00 0.00 0.00 3.16
282 283 3.488553 GCATAGATTAACCCAACGCCAAC 60.489 47.826 0.00 0.00 0.00 3.77
283 284 2.685897 GCATAGATTAACCCAACGCCAA 59.314 45.455 0.00 0.00 0.00 4.52
284 285 2.294074 GCATAGATTAACCCAACGCCA 58.706 47.619 0.00 0.00 0.00 5.69
285 286 2.294074 TGCATAGATTAACCCAACGCC 58.706 47.619 0.00 0.00 0.00 5.68
286 287 4.568152 AATGCATAGATTAACCCAACGC 57.432 40.909 0.00 0.00 0.00 4.84
287 288 9.528018 AAAATAAATGCATAGATTAACCCAACG 57.472 29.630 0.00 0.00 0.00 4.10
332 333 9.182214 CCTTGCATATAGCCATCTTTATTACAT 57.818 33.333 0.00 0.00 44.83 2.29
333 334 7.121168 GCCTTGCATATAGCCATCTTTATTACA 59.879 37.037 0.00 0.00 44.83 2.41
334 335 7.415653 GGCCTTGCATATAGCCATCTTTATTAC 60.416 40.741 10.85 0.00 45.07 1.89
335 336 6.603201 GGCCTTGCATATAGCCATCTTTATTA 59.397 38.462 10.85 0.00 45.07 0.98
336 337 5.420104 GGCCTTGCATATAGCCATCTTTATT 59.580 40.000 10.85 0.00 45.07 1.40
337 338 4.952335 GGCCTTGCATATAGCCATCTTTAT 59.048 41.667 10.85 0.00 45.07 1.40
338 339 4.335416 GGCCTTGCATATAGCCATCTTTA 58.665 43.478 10.85 0.00 45.07 1.85
339 340 3.160269 GGCCTTGCATATAGCCATCTTT 58.840 45.455 10.85 0.00 45.07 2.52
340 341 2.800250 GGCCTTGCATATAGCCATCTT 58.200 47.619 10.85 0.00 45.07 2.40
341 342 1.339438 CGGCCTTGCATATAGCCATCT 60.339 52.381 14.72 0.00 46.08 2.90
342 343 1.089920 CGGCCTTGCATATAGCCATC 58.910 55.000 14.72 0.00 46.08 3.51
343 344 0.322816 CCGGCCTTGCATATAGCCAT 60.323 55.000 14.72 0.00 46.08 4.40
344 345 1.073025 CCGGCCTTGCATATAGCCA 59.927 57.895 14.72 0.00 46.08 4.75
345 346 0.674895 CTCCGGCCTTGCATATAGCC 60.675 60.000 0.00 6.71 44.83 3.93
346 347 0.035458 ACTCCGGCCTTGCATATAGC 59.965 55.000 0.00 0.00 45.96 2.97
347 348 2.550830 AACTCCGGCCTTGCATATAG 57.449 50.000 0.00 0.00 0.00 1.31
348 349 4.564821 GGATTAACTCCGGCCTTGCATATA 60.565 45.833 0.00 0.00 33.29 0.86
349 350 3.412386 GATTAACTCCGGCCTTGCATAT 58.588 45.455 0.00 0.00 0.00 1.78
350 351 2.486548 GGATTAACTCCGGCCTTGCATA 60.487 50.000 0.00 0.00 33.29 3.14
351 352 1.680338 GATTAACTCCGGCCTTGCAT 58.320 50.000 0.00 0.00 0.00 3.96
352 353 0.393808 GGATTAACTCCGGCCTTGCA 60.394 55.000 0.00 0.00 33.29 4.08
353 354 2.405143 GGATTAACTCCGGCCTTGC 58.595 57.895 0.00 0.00 33.29 4.01
397 398 8.535335 ACATGACATATTCTAGTCTTCACAGTT 58.465 33.333 0.00 0.00 35.81 3.16
398 399 8.072321 ACATGACATATTCTAGTCTTCACAGT 57.928 34.615 0.00 0.00 35.81 3.55
399 400 8.939201 AACATGACATATTCTAGTCTTCACAG 57.061 34.615 0.00 0.00 35.81 3.66
400 401 9.725019 AAAACATGACATATTCTAGTCTTCACA 57.275 29.630 0.00 0.00 35.81 3.58
402 403 9.942850 TGAAAACATGACATATTCTAGTCTTCA 57.057 29.630 0.00 0.00 35.81 3.02
433 434 8.519799 AGAAATATAATCAAGAGCCGGAAAAA 57.480 30.769 5.05 0.00 0.00 1.94
434 435 8.519799 AAGAAATATAATCAAGAGCCGGAAAA 57.480 30.769 5.05 0.00 0.00 2.29
435 436 7.228706 GGAAGAAATATAATCAAGAGCCGGAAA 59.771 37.037 5.05 0.00 0.00 3.13
436 437 6.710744 GGAAGAAATATAATCAAGAGCCGGAA 59.289 38.462 5.05 0.00 0.00 4.30
437 438 6.043243 AGGAAGAAATATAATCAAGAGCCGGA 59.957 38.462 5.05 0.00 0.00 5.14
438 439 6.234177 AGGAAGAAATATAATCAAGAGCCGG 58.766 40.000 0.00 0.00 0.00 6.13
439 440 7.736447 AAGGAAGAAATATAATCAAGAGCCG 57.264 36.000 0.00 0.00 0.00 5.52
440 441 9.785982 ACTAAGGAAGAAATATAATCAAGAGCC 57.214 33.333 0.00 0.00 0.00 4.70
452 453 9.667107 CATTACACCTCAACTAAGGAAGAAATA 57.333 33.333 0.00 0.00 38.87 1.40
453 454 8.164070 ACATTACACCTCAACTAAGGAAGAAAT 58.836 33.333 0.00 0.00 38.87 2.17
454 455 7.514721 ACATTACACCTCAACTAAGGAAGAAA 58.485 34.615 0.00 0.00 38.87 2.52
455 456 7.074653 ACATTACACCTCAACTAAGGAAGAA 57.925 36.000 0.00 0.00 38.87 2.52
456 457 6.681729 ACATTACACCTCAACTAAGGAAGA 57.318 37.500 0.00 0.00 38.87 2.87
457 458 8.842358 TTTACATTACACCTCAACTAAGGAAG 57.158 34.615 0.00 0.00 38.87 3.46
458 459 8.434392 ACTTTACATTACACCTCAACTAAGGAA 58.566 33.333 0.00 0.00 38.87 3.36
459 460 7.876068 CACTTTACATTACACCTCAACTAAGGA 59.124 37.037 0.00 0.00 38.87 3.36
460 461 7.876068 TCACTTTACATTACACCTCAACTAAGG 59.124 37.037 0.00 0.00 42.55 2.69
461 462 8.709646 GTCACTTTACATTACACCTCAACTAAG 58.290 37.037 0.00 0.00 0.00 2.18
462 463 8.205512 TGTCACTTTACATTACACCTCAACTAA 58.794 33.333 0.00 0.00 0.00 2.24
463 464 7.728148 TGTCACTTTACATTACACCTCAACTA 58.272 34.615 0.00 0.00 0.00 2.24
464 465 6.588204 TGTCACTTTACATTACACCTCAACT 58.412 36.000 0.00 0.00 0.00 3.16
465 466 6.854496 TGTCACTTTACATTACACCTCAAC 57.146 37.500 0.00 0.00 0.00 3.18
466 467 8.151596 TGTATGTCACTTTACATTACACCTCAA 58.848 33.333 0.00 0.00 40.52 3.02
467 468 7.601130 GTGTATGTCACTTTACATTACACCTCA 59.399 37.037 13.10 0.00 43.13 3.86
468 469 7.601130 TGTGTATGTCACTTTACATTACACCTC 59.399 37.037 17.25 4.63 46.27 3.85
469 470 7.446769 TGTGTATGTCACTTTACATTACACCT 58.553 34.615 17.25 0.00 46.27 4.00
470 471 7.661127 TGTGTATGTCACTTTACATTACACC 57.339 36.000 17.25 8.20 46.27 4.16
492 493 4.639755 TGAACAACAACACATCTGACATGT 59.360 37.500 0.00 0.00 0.00 3.21
493 494 5.007921 TCTGAACAACAACACATCTGACATG 59.992 40.000 0.00 0.00 0.00 3.21
497 498 4.516321 CCATCTGAACAACAACACATCTGA 59.484 41.667 0.00 0.00 0.00 3.27
521 522 2.978010 AAAGGTGGCAACGGCTCG 60.978 61.111 0.00 0.00 40.87 5.03
559 560 0.972013 CGTTTTCGCACGTTATTGGC 59.028 50.000 0.00 0.00 35.34 4.52
560 561 2.227556 GTCGTTTTCGCACGTTATTGG 58.772 47.619 0.00 0.00 43.73 3.16
611 612 2.766263 TGTGGATCAGTGGATGGACTAC 59.234 50.000 0.00 0.00 32.67 2.73
644 645 8.079211 AGTAATTGTGACTGTATGTATCACCT 57.921 34.615 1.45 0.00 41.71 4.00
646 647 8.604035 CCAAGTAATTGTGACTGTATGTATCAC 58.396 37.037 1.80 0.00 42.54 3.06
665 678 6.765989 CCAATGTAGTATTAGCAGCCAAGTAA 59.234 38.462 0.00 0.00 0.00 2.24
671 684 6.234177 AGATTCCAATGTAGTATTAGCAGCC 58.766 40.000 0.00 0.00 0.00 4.85
686 699 4.760530 TCCGAGTGAATGAGATTCCAAT 57.239 40.909 0.00 0.00 38.50 3.16
705 718 2.866762 GTGCAGACATTTCTCGGTATCC 59.133 50.000 0.00 0.00 0.00 2.59
763 776 8.860128 GTTTCTTCTTTGTTGGTTTAGTGAAAG 58.140 33.333 0.00 0.00 0.00 2.62
767 780 6.253512 GCTGTTTCTTCTTTGTTGGTTTAGTG 59.746 38.462 0.00 0.00 0.00 2.74
768 781 6.152831 AGCTGTTTCTTCTTTGTTGGTTTAGT 59.847 34.615 0.00 0.00 0.00 2.24
770 783 6.071616 ACAGCTGTTTCTTCTTTGTTGGTTTA 60.072 34.615 15.25 0.00 0.00 2.01
771 784 5.170748 CAGCTGTTTCTTCTTTGTTGGTTT 58.829 37.500 5.25 0.00 0.00 3.27
772 785 4.220602 ACAGCTGTTTCTTCTTTGTTGGTT 59.779 37.500 15.25 0.00 0.00 3.67
774 787 4.376340 ACAGCTGTTTCTTCTTTGTTGG 57.624 40.909 15.25 0.00 0.00 3.77
775 788 7.328249 TGTTAAACAGCTGTTTCTTCTTTGTTG 59.672 33.333 40.27 2.37 44.15 3.33
776 789 7.375053 TGTTAAACAGCTGTTTCTTCTTTGTT 58.625 30.769 40.27 20.42 44.15 2.83
777 790 6.919721 TGTTAAACAGCTGTTTCTTCTTTGT 58.080 32.000 40.27 21.10 44.15 2.83
812 825 3.692101 TGGTCTTGTAATATTTGGGCACG 59.308 43.478 0.00 0.00 0.00 5.34
814 827 3.699038 GCTGGTCTTGTAATATTTGGGCA 59.301 43.478 0.00 0.00 0.00 5.36
823 875 4.697352 GTGTCTTGATGCTGGTCTTGTAAT 59.303 41.667 0.00 0.00 0.00 1.89
830 882 1.537202 GTTGGTGTCTTGATGCTGGTC 59.463 52.381 0.00 0.00 0.00 4.02
833 885 0.110056 GCGTTGGTGTCTTGATGCTG 60.110 55.000 0.00 0.00 0.00 4.41
835 887 0.385974 GTGCGTTGGTGTCTTGATGC 60.386 55.000 0.00 0.00 0.00 3.91
838 890 0.813610 CTGGTGCGTTGGTGTCTTGA 60.814 55.000 0.00 0.00 0.00 3.02
842 894 2.591715 AGCTGGTGCGTTGGTGTC 60.592 61.111 0.00 0.00 45.42 3.67
843 895 2.901840 CAGCTGGTGCGTTGGTGT 60.902 61.111 5.57 0.00 45.42 4.16
844 896 2.901840 ACAGCTGGTGCGTTGGTG 60.902 61.111 19.93 0.00 45.42 4.17
845 897 2.901840 CACAGCTGGTGCGTTGGT 60.902 61.111 19.93 0.00 45.42 3.67
846 898 3.663176 CCACAGCTGGTGCGTTGG 61.663 66.667 19.93 11.57 46.50 3.77
847 899 3.663176 CCCACAGCTGGTGCGTTG 61.663 66.667 19.93 5.68 46.50 4.10
848 900 3.714487 AACCCACAGCTGGTGCGTT 62.714 57.895 19.93 14.53 46.50 4.84
849 901 4.189580 AACCCACAGCTGGTGCGT 62.190 61.111 19.93 9.44 46.50 5.24
850 902 3.663176 CAACCCACAGCTGGTGCG 61.663 66.667 19.93 8.81 46.50 5.34
851 903 3.982241 GCAACCCACAGCTGGTGC 61.982 66.667 19.93 14.66 46.50 5.01
888 940 1.721487 GGGCACGTCAATCAATCCG 59.279 57.895 0.00 0.00 0.00 4.18
890 942 1.024579 ACCGGGCACGTCAATCAATC 61.025 55.000 7.97 0.00 38.78 2.67
904 956 3.312421 CACAATTAGCTGATGTAACCGGG 59.688 47.826 6.32 0.00 0.00 5.73
928 980 8.581253 TGCTGATCGATCTTCTTTATATAGGA 57.419 34.615 25.02 9.22 0.00 2.94
929 981 8.681806 TCTGCTGATCGATCTTCTTTATATAGG 58.318 37.037 25.02 0.64 0.00 2.57
951 1003 4.033358 CGATTTGTACTTGTGAGGATCTGC 59.967 45.833 0.00 0.00 34.92 4.26
1086 1151 3.008240 CTTGTGCGCTCTGCTGACG 62.008 63.158 9.73 9.87 46.63 4.35
1088 1153 3.046087 GCTTGTGCGCTCTGCTGA 61.046 61.111 9.73 0.00 46.63 4.26
1320 3876 1.626321 TCCTTATGGAAGCGGTTGTCA 59.374 47.619 3.70 3.29 39.87 3.58
1335 3891 1.591703 CACCAGCTCGCTGTCCTTA 59.408 57.895 16.82 0.00 42.15 2.69
1441 3997 2.264794 GTCGACGACCTTGGCCAT 59.735 61.111 17.25 0.00 0.00 4.40
1485 4043 1.373497 CTCGAAGTTGTGCTCCGCT 60.373 57.895 0.00 0.00 0.00 5.52
1542 4100 2.113139 CCCAACGCCTTCCACACT 59.887 61.111 0.00 0.00 0.00 3.55
1649 4212 0.632294 ACCTCCCTCAGTCCCTCTAC 59.368 60.000 0.00 0.00 0.00 2.59
1652 4215 1.382009 GGACCTCCCTCAGTCCCTC 60.382 68.421 0.00 0.00 45.76 4.30
1653 4216 2.781406 GGACCTCCCTCAGTCCCT 59.219 66.667 0.00 0.00 45.76 4.20
1668 4231 3.819564 ACGCTGCATAATAAGTGAGGA 57.180 42.857 0.00 0.00 0.00 3.71
1670 4233 4.094887 ACCAAACGCTGCATAATAAGTGAG 59.905 41.667 0.00 0.00 0.00 3.51
1674 4237 4.094887 ACAGACCAAACGCTGCATAATAAG 59.905 41.667 0.00 0.00 35.57 1.73
1701 4264 0.250727 TTAGCAGCAACTCCACCACC 60.251 55.000 0.00 0.00 0.00 4.61
1877 4445 4.502645 CAGGTTTTCTTTTAACCAACTGCG 59.497 41.667 7.44 0.00 46.01 5.18
1888 4456 5.793817 AGTTCTTTGTGCAGGTTTTCTTTT 58.206 33.333 0.00 0.00 0.00 2.27
1897 4465 3.781079 TTTGTGAGTTCTTTGTGCAGG 57.219 42.857 0.00 0.00 0.00 4.85
1979 4547 2.674033 TGACTGCACATGCCTGGC 60.674 61.111 12.87 12.87 41.18 4.85
1984 4552 0.945743 TGTCGTCTGACTGCACATGC 60.946 55.000 6.21 0.00 45.70 4.06
1992 4560 1.649390 CCTAGCGCTGTCGTCTGACT 61.649 60.000 22.90 0.00 45.70 3.41
1998 4566 2.442272 ATCCCCTAGCGCTGTCGT 60.442 61.111 22.90 0.00 38.14 4.34
1999 4567 1.810606 ATGATCCCCTAGCGCTGTCG 61.811 60.000 22.90 8.25 39.07 4.35
2000 4568 0.320247 CATGATCCCCTAGCGCTGTC 60.320 60.000 22.90 8.79 0.00 3.51
2045 4613 2.736721 ACAATTTCGACCAGACATCACG 59.263 45.455 0.00 0.00 0.00 4.35
2093 4662 9.410556 CAGAAATTTTATTTCACGAATGTTCCT 57.589 29.630 13.00 0.00 0.00 3.36
2137 4707 7.179076 TCTCTTATCTAGGCCGTAAAAGTTT 57.821 36.000 0.00 0.00 0.00 2.66
2172 4744 3.058224 GGTCGCCTGGCATGAATTATTAC 60.058 47.826 20.29 0.58 0.00 1.89
2187 4759 2.064581 AATTCCTAGCCGGTCGCCT 61.065 57.895 1.90 0.00 38.78 5.52
2189 4761 1.887707 CCAATTCCTAGCCGGTCGC 60.888 63.158 1.90 0.00 37.98 5.19
2236 4808 2.099263 TGAGAAAGGATAAGGACGAGCG 59.901 50.000 0.00 0.00 0.00 5.03
2250 4879 1.196354 CAAGGAGTTGCGCTGAGAAAG 59.804 52.381 9.73 0.00 0.00 2.62
2258 4887 1.154150 GATGCACAAGGAGTTGCGC 60.154 57.895 0.00 0.00 41.33 6.09
2259 4888 0.167470 CAGATGCACAAGGAGTTGCG 59.833 55.000 0.00 0.00 37.14 4.85
2260 4889 1.527034 TCAGATGCACAAGGAGTTGC 58.473 50.000 0.00 0.00 37.14 4.17
2270 5174 1.146637 GATGCGAGGATCAGATGCAC 58.853 55.000 4.52 0.00 38.54 4.57
2279 5183 2.026734 CAGCGACGATGCGAGGAT 59.973 61.111 0.00 0.00 40.67 3.24
2298 5202 2.818132 CCCAGCATCGTCTCCTCC 59.182 66.667 0.00 0.00 0.00 4.30
2423 5387 7.227910 GTGAGGGATTATTCGCCAAGTAAAATA 59.772 37.037 0.00 0.00 35.48 1.40
2430 5394 2.222027 GGTGAGGGATTATTCGCCAAG 58.778 52.381 0.00 0.00 42.28 3.61
2440 5404 0.999712 AACGATTGGGGTGAGGGATT 59.000 50.000 0.00 0.00 0.00 3.01
2465 5433 2.799126 TGTCTGGTCAAAGTTGTGGT 57.201 45.000 0.00 0.00 0.00 4.16
2472 5440 2.849942 TGGTGTGATGTCTGGTCAAAG 58.150 47.619 0.00 0.00 0.00 2.77
2561 5542 0.946528 GATGCTCATATGCCGCAACA 59.053 50.000 18.94 3.50 37.20 3.33
2564 5545 0.975887 TAGGATGCTCATATGCCGCA 59.024 50.000 17.84 17.84 38.14 5.69
2570 5557 8.212259 ACCAGATAAGTTTAGGATGCTCATAT 57.788 34.615 0.00 0.00 0.00 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.