AutoCloner

Multiple sequence alignment - TraesCS7B01G328600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G328600	chr7B	100.000	3162	0	0	1	3162	583624345	583621184	0.000000e+00	5840.0
1	TraesCS7B01G328600	chr7B	95.978	547	20	2	1	547	548474333	548474877	0.000000e+00	887.0
2	TraesCS7B01G328600	chr7B	94.085	541	26	5	1	541	609703074	609703608	0.000000e+00	817.0
3	TraesCS7B01G328600	chr7B	83.022	536	40	26	1972	2496	583559445	583558950	3.740000e-119	438.0
4	TraesCS7B01G328600	chr7D	93.379	2356	99	23	845	3162	540507932	540505596	0.000000e+00	3434.0
5	TraesCS7B01G328600	chr7D	92.737	179	9	1	553	727	540508210	540508032	4.050000e-64	255.0
6	TraesCS7B01G328600	chr7D	76.706	425	77	14	1531	1946	540510782	540510371	1.910000e-52	217.0
7	TraesCS7B01G328600	chr7D	94.340	53	3	0	796	848	540508006	540507954	7.270000e-12	82.4
8	TraesCS7B01G328600	chr7A	92.304	2326	108	32	803	3070	621858085	621855773	0.000000e+00	3238.0
9	TraesCS7B01G328600	chr7A	85.882	170	4	2	558	727	621858240	621858091	2.520000e-36	163.0
10	TraesCS7B01G328600	chr7A	75.209	359	74	12	2705	3053	621859878	621859525	4.220000e-34	156.0
11	TraesCS7B01G328600	chr7A	95.745	47	1	1	3117	3162	621855716	621855670	1.220000e-09	75.0
12	TraesCS7B01G328600	chr5B	95.780	545	21	2	1	544	582156011	582156554	0.000000e+00	878.0
13	TraesCS7B01G328600	chr2B	95.756	542	22	1	1	542	27907058	27907598	0.000000e+00	872.0
14	TraesCS7B01G328600	chr4B	95.221	544	25	1	1	544	385646329	385645787	0.000000e+00	859.0
15	TraesCS7B01G328600	chr4B	95.336	536	25	0	1	536	495235354	495234819	0.000000e+00	852.0
16	TraesCS7B01G328600	chr3D	94.041	537	31	1	1	536	540257834	540258370	0.000000e+00	813.0
17	TraesCS7B01G328600	chrUn	93.358	542	34	2	2	542	295608844	295608304	0.000000e+00	800.0
18	TraesCS7B01G328600	chr3B	93.358	542	34	2	2	542	5743980	5743440	0.000000e+00	800.0
19	TraesCS7B01G328600	chr3B	100.000	49	0	0	728	776	399301847	399301799	1.210000e-14	91.6
20	TraesCS7B01G328600	chr6D	77.660	658	115	24	1518	2161	14288925	14288286	3.850000e-99	372.0
21	TraesCS7B01G328600	chr6D	81.592	201	30	2	1318	1518	14289456	14289263	3.260000e-35	159.0
22	TraesCS7B01G328600	chr6A	83.155	374	54	4	1785	2152	15582479	15582109	1.820000e-87	333.0
23	TraesCS7B01G328600	chr6A	82.673	202	26	4	1318	1518	15577903	15577710	1.510000e-38	171.0
24	TraesCS7B01G328600	chr6A	82.759	174	30	0	1518	1691	15577354	15577181	4.220000e-34	156.0
25	TraesCS7B01G328600	chr6A	98.214	56	0	1	722	776	104533287	104533342	2.600000e-16	97.1
26	TraesCS7B01G328600	chr6B	80.670	388	66	4	1785	2166	26077761	26078145	3.080000e-75	292.0
27	TraesCS7B01G328600	chr6B	83.582	201	26	2	1318	1518	26082140	26082333	6.970000e-42	182.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G328600	chr7B	583621184	583624345	3161	True	5840.0	5840	100.0000	1	3162	1	chr7B.!!$R2	3161
1	TraesCS7B01G328600	chr7B	548474333	548474877	544	False	887.0	887	95.9780	1	547	1	chr7B.!!$F1	546
2	TraesCS7B01G328600	chr7B	609703074	609703608	534	False	817.0	817	94.0850	1	541	1	chr7B.!!$F2	540
3	TraesCS7B01G328600	chr7D	540505596	540510782	5186	True	997.1	3434	89.2905	553	3162	4	chr7D.!!$R1	2609
4	TraesCS7B01G328600	chr7A	621855670	621859878	4208	True	908.0	3238	87.2850	558	3162	4	chr7A.!!$R1	2604
5	TraesCS7B01G328600	chr5B	582156011	582156554	543	False	878.0	878	95.7800	1	544	1	chr5B.!!$F1	543
6	TraesCS7B01G328600	chr2B	27907058	27907598	540	False	872.0	872	95.7560	1	542	1	chr2B.!!$F1	541
7	TraesCS7B01G328600	chr4B	385645787	385646329	542	True	859.0	859	95.2210	1	544	1	chr4B.!!$R1	543
8	TraesCS7B01G328600	chr4B	495234819	495235354	535	True	852.0	852	95.3360	1	536	1	chr4B.!!$R2	535
9	TraesCS7B01G328600	chr3D	540257834	540258370	536	False	813.0	813	94.0410	1	536	1	chr3D.!!$F1	535
10	TraesCS7B01G328600	chrUn	295608304	295608844	540	True	800.0	800	93.3580	2	542	1	chrUn.!!$R1	540
11	TraesCS7B01G328600	chr3B	5743440	5743980	540	True	800.0	800	93.3580	2	542	1	chr3B.!!$R1	540
12	TraesCS7B01G328600	chr6D	14288286	14289456	1170	True	265.5	372	79.6260	1318	2161	2	chr6D.!!$R1	843
13	TraesCS7B01G328600	chr6B	26077761	26082333	4572	False	237.0	292	82.1260	1318	2166	2	chr6B.!!$F1	848

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
961	3874	0.030638	GAAGAGCACGCAAAGGCAAA	59.969	50.000	0.0	0.0	41.24	3.68	F
1734	5010	1.067084	CCATTTGCCACACACGCAA	59.933	52.632	0.0	0.0	44.21	4.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1810	5094	1.055040	ACTGGAAGAAGCTGCAGTCT	58.945	50.0	16.64	8.39	43.74	3.24	R
3045	7474	0.969149	CCTCTAGCACCGCATCCATA	59.031	55.0	0.00	0.00	0.00	2.74	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
308	310	3.665675	GATCTTCCGTGGCGCCAGT	62.666	63.158	33.73	9.89	0.00	4.00
328	330	0.661020	CGTGCCTGGTTTCGTTCTTT	59.339	50.000	0.00	0.00	0.00	2.52
430	432	4.141367	TGTGTTTCAGTTTATGGGAGTGGA	60.141	41.667	0.00	0.00	0.00	4.02
493	496	7.494625	CGTAATTAACTGGGCAATTCTCTTCTA	59.505	37.037	0.00	0.00	0.00	2.10
536	539	3.639538	TCTCTGTCTCCGTTTCGAAAAG	58.360	45.455	13.10	14.60	0.00	2.27
570	3412	4.808414	TGAGAACATCCTACTGGTTGAG	57.192	45.455	0.00	0.00	36.72	3.02
649	3491	3.698040	CTGCATAACCAATTCCTCTGCTT	59.302	43.478	0.00	0.00	0.00	3.91
668	3510	0.945265	TTGAACTTCCGGCCGTTACG	60.945	55.000	26.12	11.97	0.00	3.18
727	3573	1.608283	GCACGAGCATTATCCCCTACC	60.608	57.143	0.00	0.00	41.58	3.18
728	3574	1.691976	CACGAGCATTATCCCCTACCA	59.308	52.381	0.00	0.00	0.00	3.25
729	3575	2.104111	CACGAGCATTATCCCCTACCAA	59.896	50.000	0.00	0.00	0.00	3.67
730	3576	2.775384	ACGAGCATTATCCCCTACCAAA	59.225	45.455	0.00	0.00	0.00	3.28
731	3577	3.201266	ACGAGCATTATCCCCTACCAAAA	59.799	43.478	0.00	0.00	0.00	2.44
732	3578	4.204012	CGAGCATTATCCCCTACCAAAAA	58.796	43.478	0.00	0.00	0.00	1.94
733	3579	4.827284	CGAGCATTATCCCCTACCAAAAAT	59.173	41.667	0.00	0.00	0.00	1.82
734	3580	5.278463	CGAGCATTATCCCCTACCAAAAATG	60.278	44.000	0.00	0.00	0.00	2.32
735	3581	4.344968	AGCATTATCCCCTACCAAAAATGC	59.655	41.667	8.64	8.64	44.93	3.56
736	3582	4.344968	GCATTATCCCCTACCAAAAATGCT	59.655	41.667	9.26	0.00	42.61	3.79
737	3583	5.538433	GCATTATCCCCTACCAAAAATGCTA	59.462	40.000	9.26	0.00	42.61	3.49
738	3584	6.294731	GCATTATCCCCTACCAAAAATGCTAG	60.295	42.308	9.26	0.00	42.61	3.42
739	3585	6.584471	TTATCCCCTACCAAAAATGCTAGA	57.416	37.500	0.00	0.00	0.00	2.43
740	3586	4.230745	TCCCCTACCAAAAATGCTAGAC	57.769	45.455	0.00	0.00	0.00	2.59
741	3587	3.053917	TCCCCTACCAAAAATGCTAGACC	60.054	47.826	0.00	0.00	0.00	3.85
742	3588	3.053619	CCCCTACCAAAAATGCTAGACCT	60.054	47.826	0.00	0.00	0.00	3.85
743	3589	4.165372	CCCCTACCAAAAATGCTAGACCTA	59.835	45.833	0.00	0.00	0.00	3.08
744	3590	5.123936	CCCTACCAAAAATGCTAGACCTAC	58.876	45.833	0.00	0.00	0.00	3.18
745	3591	4.809426	CCTACCAAAAATGCTAGACCTACG	59.191	45.833	0.00	0.00	0.00	3.51
746	3592	4.281898	ACCAAAAATGCTAGACCTACGT	57.718	40.909	0.00	0.00	0.00	3.57
747	3593	5.410355	ACCAAAAATGCTAGACCTACGTA	57.590	39.130	0.00	0.00	0.00	3.57
748	3594	5.797051	ACCAAAAATGCTAGACCTACGTAA	58.203	37.500	0.00	0.00	0.00	3.18
749	3595	5.640783	ACCAAAAATGCTAGACCTACGTAAC	59.359	40.000	0.00	0.00	0.00	2.50
750	3596	5.873164	CCAAAAATGCTAGACCTACGTAACT	59.127	40.000	0.00	0.00	0.00	2.24
751	3597	6.370718	CCAAAAATGCTAGACCTACGTAACTT	59.629	38.462	0.00	0.00	0.00	2.66
752	3598	6.963049	AAAATGCTAGACCTACGTAACTTG	57.037	37.500	0.00	0.00	0.00	3.16
753	3599	5.909621	AATGCTAGACCTACGTAACTTGA	57.090	39.130	0.00	0.00	0.00	3.02
754	3600	6.466885	AATGCTAGACCTACGTAACTTGAT	57.533	37.500	0.00	0.00	0.00	2.57
755	3601	7.578310	AATGCTAGACCTACGTAACTTGATA	57.422	36.000	0.00	0.00	0.00	2.15
756	3602	6.369059	TGCTAGACCTACGTAACTTGATAC	57.631	41.667	0.00	0.00	0.00	2.24
776	3622	2.950433	CGTAAAGCTACGTTCCTTCCA	58.050	47.619	0.00	0.00	44.79	3.53
777	3623	3.319755	CGTAAAGCTACGTTCCTTCCAA	58.680	45.455	0.00	0.00	44.79	3.53
778	3624	3.122445	CGTAAAGCTACGTTCCTTCCAAC	59.878	47.826	0.00	0.00	44.79	3.77
798	3644	1.876799	CGTACATGCCACTTTGACCAA	59.123	47.619	0.00	0.00	0.00	3.67
920	3800	0.526954	TCGATCGAGCTAAAACCGGC	60.527	55.000	15.15	0.00	0.00	6.13
961	3874	0.030638	GAAGAGCACGCAAAGGCAAA	59.969	50.000	0.00	0.00	41.24	3.68
1179	4100	3.792736	TCCCAAATCTCCGCGGGG	61.793	66.667	27.83	25.23	39.34	5.73
1241	4164	1.768275	ACACAACCTGATCACTGACCA	59.232	47.619	0.00	0.00	0.00	4.02
1621	4887	2.875087	TCGACTTCAACCTCGACAAA	57.125	45.000	0.00	0.00	34.04	2.83
1629	4895	1.260561	CAACCTCGACAAACTCAACGG	59.739	52.381	0.00	0.00	0.00	4.44
1733	5009	2.726909	CCATTTGCCACACACGCA	59.273	55.556	0.00	0.00	0.00	5.24
1734	5010	1.067084	CCATTTGCCACACACGCAA	59.933	52.632	0.00	0.00	44.21	4.85
1735	5011	1.214373	CCATTTGCCACACACGCAAC	61.214	55.000	0.00	0.00	45.48	4.17
1831	5115	1.001860	GACTGCAGCTTCTTCCAGTCT	59.998	52.381	15.27	0.00	46.50	3.24
2053	5343	0.961019	ACTACTACGCGTCCAACCAA	59.039	50.000	18.63	0.00	0.00	3.67
2104	5394	2.606519	ACCAAGCTCGGCAGGGTA	60.607	61.111	0.00	0.00	35.94	3.69
2435	5781	3.424703	ACTCCAGCACAAAATAGCATGT	58.575	40.909	0.00	0.00	0.00	3.21
2449	5795	1.489649	AGCATGTTGATGGCTCTAGCT	59.510	47.619	1.39	0.00	41.70	3.32
2450	5796	2.702478	AGCATGTTGATGGCTCTAGCTA	59.298	45.455	1.39	0.00	41.70	3.32
2451	5797	3.065655	GCATGTTGATGGCTCTAGCTAG	58.934	50.000	15.01	15.01	41.70	3.42
2452	5798	2.898729	TGTTGATGGCTCTAGCTAGC	57.101	50.000	16.35	6.62	41.99	3.42
2486	5832	0.318107	CGACTGGCACCAAAAGCAAG	60.318	55.000	0.00	0.00	39.01	4.01
2850	7277	5.304357	CACTTAACCACCCTCCAAAAAGATT	59.696	40.000	0.00	0.00	0.00	2.40
2914	7341	1.879380	TGGCAATCACTCAAACTTCGG	59.121	47.619	0.00	0.00	0.00	4.30
2956	7385	3.762407	AAAACCAACAAACCCCTATGC	57.238	42.857	0.00	0.00	0.00	3.14
3015	7444	2.279252	GCGCGATACCGGATGTGT	60.279	61.111	12.10	0.00	36.06	3.72
3077	7700	5.507650	CGGTGCTAGAGGAAAAGGATAGTAC	60.508	48.000	0.00	0.00	0.00	2.73
3119	7742	7.743116	TGTTCCATAGGGTGTAGATCTAAAA	57.257	36.000	3.40	0.00	34.93	1.52

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
26	27	1.779061	ATCAACCGGCACCACCTTCT	61.779	55.000	0.00	0.00	35.61	2.85
99	100	4.681978	AAGTCTGGACGCCACCGC	62.682	66.667	0.00	0.00	38.22	5.68
308	310	0.179067	AAGAACGAAACCAGGCACGA	60.179	50.000	7.39	0.00	0.00	4.35
328	330	2.610374	CCGGTTCTGACGAAAAACTCAA	59.390	45.455	0.00	0.00	0.00	3.02
430	432	1.106944	CGGAACAACAAGGGCCAAGT	61.107	55.000	6.18	0.00	0.00	3.16
461	463	5.986501	TTGCCCAGTTAATTACGGAAAAT	57.013	34.783	0.00	0.00	0.00	1.82
518	521	4.789095	TTTCTTTTCGAAACGGAGACAG	57.211	40.909	10.79	3.59	36.72	3.51
544	547	5.153950	ACCAGTAGGATGTTCTCAACTTC	57.846	43.478	0.00	0.00	38.69	3.01
545	548	5.071788	TCAACCAGTAGGATGTTCTCAACTT	59.928	40.000	0.00	0.00	38.71	2.66
546	549	4.593206	TCAACCAGTAGGATGTTCTCAACT	59.407	41.667	0.00	0.00	38.71	3.16
547	550	4.894784	TCAACCAGTAGGATGTTCTCAAC	58.105	43.478	0.00	0.00	38.71	3.18
548	551	4.020218	CCTCAACCAGTAGGATGTTCTCAA	60.020	45.833	0.00	0.00	38.71	3.02
549	552	3.515502	CCTCAACCAGTAGGATGTTCTCA	59.484	47.826	0.00	0.00	38.71	3.27
550	553	3.118592	CCCTCAACCAGTAGGATGTTCTC	60.119	52.174	0.00	0.00	38.71	2.87
551	554	2.840651	CCCTCAACCAGTAGGATGTTCT	59.159	50.000	0.00	0.00	38.71	3.01
552	555	2.838202	TCCCTCAACCAGTAGGATGTTC	59.162	50.000	0.00	0.00	38.71	3.18
553	556	2.840651	CTCCCTCAACCAGTAGGATGTT	59.159	50.000	0.00	0.00	38.71	2.71
554	557	2.472029	CTCCCTCAACCAGTAGGATGT	58.528	52.381	0.00	0.00	38.71	3.06
555	558	1.765314	CCTCCCTCAACCAGTAGGATG	59.235	57.143	0.00	0.00	38.94	3.51
556	559	1.651770	TCCTCCCTCAACCAGTAGGAT	59.348	52.381	0.00	0.00	38.69	3.24
557	560	1.089978	TCCTCCCTCAACCAGTAGGA	58.910	55.000	0.00	0.00	38.69	2.94
558	561	1.555533	GTTCCTCCCTCAACCAGTAGG	59.444	57.143	0.00	0.00	42.21	3.18
559	562	2.234908	CTGTTCCTCCCTCAACCAGTAG	59.765	54.545	0.00	0.00	0.00	2.57
560	563	2.257207	CTGTTCCTCCCTCAACCAGTA	58.743	52.381	0.00	0.00	0.00	2.74
561	564	1.059913	CTGTTCCTCCCTCAACCAGT	58.940	55.000	0.00	0.00	0.00	4.00
649	3491	0.945265	CGTAACGGCCGGAAGTTCAA	60.945	55.000	31.76	1.78	0.00	2.69
668	3510	3.744426	AGCTCATTTAACACGGTGTGTAC	59.256	43.478	15.53	0.00	46.79	2.90
727	3573	6.963049	AGTTACGTAGGTCTAGCATTTTTG	57.037	37.500	0.00	0.00	0.00	2.44
728	3574	7.156673	TCAAGTTACGTAGGTCTAGCATTTTT	58.843	34.615	0.00	0.00	0.00	1.94
729	3575	6.694447	TCAAGTTACGTAGGTCTAGCATTTT	58.306	36.000	0.00	0.00	0.00	1.82
730	3576	6.276832	TCAAGTTACGTAGGTCTAGCATTT	57.723	37.500	0.00	0.00	0.00	2.32
731	3577	5.909621	TCAAGTTACGTAGGTCTAGCATT	57.090	39.130	0.00	0.00	0.00	3.56
732	3578	6.293298	CGTATCAAGTTACGTAGGTCTAGCAT	60.293	42.308	0.00	0.00	39.98	3.79
733	3579	5.007039	CGTATCAAGTTACGTAGGTCTAGCA	59.993	44.000	0.00	0.00	39.98	3.49
734	3580	5.438972	CGTATCAAGTTACGTAGGTCTAGC	58.561	45.833	0.00	0.00	39.98	3.42
744	3590	6.165620	CGTAGCTTTACGTATCAAGTTACG	57.834	41.667	26.94	26.94	46.54	3.18
757	3603	3.122445	CGTTGGAAGGAACGTAGCTTTAC	59.878	47.826	0.00	0.00	42.99	2.01
758	3604	3.319755	CGTTGGAAGGAACGTAGCTTTA	58.680	45.455	0.00	0.00	42.99	1.85
759	3605	2.140717	CGTTGGAAGGAACGTAGCTTT	58.859	47.619	0.00	0.00	42.99	3.51
760	3606	1.792006	CGTTGGAAGGAACGTAGCTT	58.208	50.000	0.00	0.00	42.99	3.74
761	3607	3.509388	CGTTGGAAGGAACGTAGCT	57.491	52.632	0.00	0.00	42.99	3.32
767	3613	1.467342	GGCATGTACGTTGGAAGGAAC	59.533	52.381	0.00	0.00	0.00	3.62
768	3614	1.072489	TGGCATGTACGTTGGAAGGAA	59.928	47.619	0.00	0.00	0.00	3.36
769	3615	0.687920	TGGCATGTACGTTGGAAGGA	59.312	50.000	0.00	0.00	0.00	3.36
770	3616	0.802494	GTGGCATGTACGTTGGAAGG	59.198	55.000	0.00	0.00	0.00	3.46
771	3617	1.808411	AGTGGCATGTACGTTGGAAG	58.192	50.000	0.00	0.00	0.00	3.46
772	3618	2.264005	AAGTGGCATGTACGTTGGAA	57.736	45.000	0.00	0.00	0.00	3.53
773	3619	1.876799	CAAAGTGGCATGTACGTTGGA	59.123	47.619	16.80	0.00	35.05	3.53
774	3620	1.876799	TCAAAGTGGCATGTACGTTGG	59.123	47.619	20.97	10.08	37.85	3.77
775	3621	2.350388	GGTCAAAGTGGCATGTACGTTG	60.350	50.000	17.78	17.78	38.37	4.10
776	3622	1.877443	GGTCAAAGTGGCATGTACGTT	59.123	47.619	0.00	0.00	0.00	3.99
777	3623	1.202710	TGGTCAAAGTGGCATGTACGT	60.203	47.619	0.00	0.00	0.00	3.57
778	3624	1.518325	TGGTCAAAGTGGCATGTACG	58.482	50.000	0.00	0.00	0.00	3.67
798	3644	3.473113	AGATATTTGCCACTTGGGGTT	57.527	42.857	0.00	0.00	37.04	4.11
961	3874	1.461127	GAATTGCTTCGCGAAGACTGT	59.539	47.619	43.98	28.15	40.79	3.55
981	3894	2.513897	GGTCGATCGGCCCCTTTG	60.514	66.667	28.46	0.00	32.85	2.77
1241	4164	3.876274	TCTACAAGAGCGAGCTCAATT	57.124	42.857	24.70	10.29	44.99	2.32
1621	4887	1.001406	CCTGAGAAGAAGCCGTTGAGT	59.999	52.381	0.00	0.00	0.00	3.41
1629	4895	1.311651	GCCCAAGCCTGAGAAGAAGC	61.312	60.000	0.00	0.00	0.00	3.86
1733	5009	2.146342	CAGCGAGATTGTCAACAGGTT	58.854	47.619	0.00	0.00	0.00	3.50
1734	5010	1.609061	CCAGCGAGATTGTCAACAGGT	60.609	52.381	0.00	0.00	0.00	4.00
1735	5011	1.081892	CCAGCGAGATTGTCAACAGG	58.918	55.000	0.00	0.00	0.00	4.00
1810	5094	1.055040	ACTGGAAGAAGCTGCAGTCT	58.945	50.000	16.64	8.39	43.74	3.24
1912	5199	4.493747	GGCGTCGGGTCGAGGAAG	62.494	72.222	13.08	0.00	43.12	3.46
2053	5343	1.926108	AGTCGTAGAAGAAGGTGCCT	58.074	50.000	0.00	0.00	39.69	4.75
2452	5798	2.978565	TCGCGGCCTAGATCGAGG	60.979	66.667	17.01	17.01	39.88	4.63
2453	5799	2.252855	GTCGCGGCCTAGATCGAG	59.747	66.667	6.13	0.00	0.00	4.04
2456	5802	2.336809	CCAGTCGCGGCCTAGATC	59.663	66.667	7.31	0.00	0.00	2.75
2486	5832	7.168302	CGTTGATGAAGTTAGGTCTGATATGAC	59.832	40.741	0.00	0.00	36.31	3.06
2544	5890	2.565391	TGCTCCATTTCAGAGGTCGTTA	59.435	45.455	0.00	0.00	0.00	3.18
2592	5938	2.287909	TGGGAATTGCTTGTTAACGCAC	60.288	45.455	7.57	0.00	35.60	5.34
2850	7277	7.704472	CCAAGACTTGTTAGTAAAACATGCAAA	59.296	33.333	14.03	0.00	33.84	3.68
2869	7296	4.021016	GTCACCTTAGACATCACCAAGACT	60.021	45.833	0.00	0.00	38.40	3.24
2956	7385	4.654915	TGCCCACTATGTATCAATCCATG	58.345	43.478	0.00	0.00	0.00	3.66
2992	7421	4.524318	CCGGTATCGCGCCACCTT	62.524	66.667	21.60	0.00	32.29	3.50
3015	7444	2.906389	ACCTTGTCTCCATCAGCACTAA	59.094	45.455	0.00	0.00	0.00	2.24
3032	7461	3.822735	CGCATCCATATCAATCCAACCTT	59.177	43.478	0.00	0.00	0.00	3.50
3045	7474	0.969149	CCTCTAGCACCGCATCCATA	59.031	55.000	0.00	0.00	0.00	2.74
3077	7700	7.466746	TGGAACATCCTATTTTCTTTTCCTG	57.533	36.000	0.00	0.00	37.46	3.86

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.