Multiple sequence alignment - TraesCS7B01G328400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G328400 chr7B 100.000 4798 0 0 1 4798 583381193 583385990 0.000000e+00 8861.0
1 TraesCS7B01G328400 chr7B 91.667 96 8 0 290 385 583560223 583560128 3.010000e-27 134.0
2 TraesCS7B01G328400 chr7B 90.909 55 5 0 1500 1554 216679654 216679600 1.850000e-09 75.0
3 TraesCS7B01G328400 chr7D 88.486 1598 80 42 14 1554 540370906 540369356 0.000000e+00 1836.0
4 TraesCS7B01G328400 chr7D 93.179 777 26 5 3359 4126 540367242 540366484 0.000000e+00 1116.0
5 TraesCS7B01G328400 chr7D 90.419 668 35 6 2630 3269 540367939 540367273 0.000000e+00 852.0
6 TraesCS7B01G328400 chr7D 84.014 857 41 34 1867 2636 540369029 540368182 0.000000e+00 736.0
7 TraesCS7B01G328400 chr7D 78.405 514 64 30 14 508 540409736 540409251 1.690000e-74 291.0
8 TraesCS7B01G328400 chr7D 94.937 79 2 2 4245 4323 540366457 540366381 6.520000e-24 122.0
9 TraesCS7B01G328400 chr7D 96.667 60 2 0 4479 4538 51417365 51417306 3.060000e-17 100.0
10 TraesCS7B01G328400 chr7D 95.082 61 3 0 4479 4539 7819166 7819226 3.950000e-16 97.1
11 TraesCS7B01G328400 chr7D 95.082 61 3 0 4479 4539 69478369 69478309 3.950000e-16 97.1
12 TraesCS7B01G328400 chr7D 95.082 61 3 0 4479 4539 549875289 549875349 3.950000e-16 97.1
13 TraesCS7B01G328400 chr7D 90.909 55 5 0 1500 1554 241097473 241097419 1.850000e-09 75.0
14 TraesCS7B01G328400 chr7A 91.235 1004 46 25 623 1610 621564161 621565138 0.000000e+00 1328.0
15 TraesCS7B01G328400 chr7A 90.113 799 43 12 3353 4129 621566720 621567504 0.000000e+00 1005.0
16 TraesCS7B01G328400 chr7A 82.636 645 46 31 11 621 621563276 621563888 1.190000e-140 510.0
17 TraesCS7B01G328400 chr7A 84.058 552 33 28 1655 2155 621565147 621565694 9.340000e-132 481.0
18 TraesCS7B01G328400 chr7A 87.406 397 20 10 2209 2599 621565815 621566187 3.430000e-116 429.0
19 TraesCS7B01G328400 chr7A 91.611 298 17 4 2704 2995 621566421 621566716 5.780000e-109 405.0
20 TraesCS7B01G328400 chr7A 91.923 260 17 2 4543 4798 621567724 621567983 1.270000e-95 361.0
21 TraesCS7B01G328400 chr7A 94.146 205 7 4 4245 4446 621567530 621567732 1.680000e-79 307.0
22 TraesCS7B01G328400 chr7A 90.909 55 5 0 1500 1554 257358478 257358532 1.850000e-09 75.0
23 TraesCS7B01G328400 chr2A 82.254 417 64 6 3383 3797 729982649 729983057 7.640000e-93 351.0
24 TraesCS7B01G328400 chr2A 90.756 119 9 2 4124 4241 78770248 78770365 1.790000e-34 158.0
25 TraesCS7B01G328400 chr2A 77.073 205 37 7 1350 1545 729980166 729980369 5.080000e-20 110.0
26 TraesCS7B01G328400 chr2D 81.775 417 66 5 3383 3797 596251028 596251436 1.650000e-89 340.0
27 TraesCS7B01G328400 chr2D 76.442 208 41 5 1345 1545 596248448 596248654 6.570000e-19 106.0
28 TraesCS7B01G328400 chr2D 95.082 61 3 0 4479 4539 646998642 646998702 3.950000e-16 97.1
29 TraesCS7B01G328400 chr2D 87.671 73 8 1 1202 1274 596248312 596248383 3.080000e-12 84.2
30 TraesCS7B01G328400 chr2B 81.055 417 69 5 3383 3797 725110828 725111236 1.670000e-84 324.0
31 TraesCS7B01G328400 chr2B 90.000 120 11 1 4126 4244 197600311 197600192 2.310000e-33 154.0
32 TraesCS7B01G328400 chr2B 72.853 361 67 22 1200 1545 725107525 725107869 1.420000e-15 95.3
33 TraesCS7B01G328400 chr5A 93.694 111 7 0 4126 4236 490502767 490502657 2.970000e-37 167.0
34 TraesCS7B01G328400 chr5A 76.087 184 33 11 1087 1264 593352337 593352515 8.560000e-13 86.1
35 TraesCS7B01G328400 chr6B 94.393 107 6 0 4126 4232 641046973 641047079 1.070000e-36 165.0
36 TraesCS7B01G328400 chr6B 92.920 113 8 0 4126 4238 714341457 714341345 1.070000e-36 165.0
37 TraesCS7B01G328400 chr4A 92.857 112 8 0 4126 4237 692072502 692072613 3.840000e-36 163.0
38 TraesCS7B01G328400 chr3D 90.909 121 9 2 4126 4246 565536785 565536667 1.380000e-35 161.0
39 TraesCS7B01G328400 chr5B 92.727 110 8 0 4126 4235 50231418 50231309 4.970000e-35 159.0
40 TraesCS7B01G328400 chr5B 79.231 130 21 6 1137 1264 580849422 580849547 8.560000e-13 86.1
41 TraesCS7B01G328400 chr5B 73.394 218 46 12 1070 1279 580843573 580843786 2.400000e-08 71.3
42 TraesCS7B01G328400 chr3B 90.598 117 11 0 4125 4241 680308101 680308217 6.430000e-34 156.0
43 TraesCS7B01G328400 chr3A 95.238 63 3 0 4479 4541 12482786 12482724 3.060000e-17 100.0
44 TraesCS7B01G328400 chr1D 96.667 60 2 0 4479 4538 416874984 416875043 3.060000e-17 100.0
45 TraesCS7B01G328400 chr1D 93.617 47 3 0 1223 1269 62858094 62858140 2.400000e-08 71.3
46 TraesCS7B01G328400 chr5D 95.161 62 3 0 4479 4540 118066467 118066406 1.100000e-16 99.0
47 TraesCS7B01G328400 chr5D 92.424 66 4 1 4479 4544 4328644 4328708 5.110000e-15 93.5
48 TraesCS7B01G328400 chr5D 97.778 45 1 0 1501 1545 393801764 393801720 1.430000e-10 78.7
49 TraesCS7B01G328400 chr5D 76.316 152 29 7 1131 1279 473848435 473848582 1.850000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G328400 chr7B 583381193 583385990 4797 False 8861.00 8861 100.0000 1 4798 1 chr7B.!!$F1 4797
1 TraesCS7B01G328400 chr7D 540366381 540370906 4525 True 932.40 1836 90.2070 14 4323 5 chr7D.!!$R5 4309
2 TraesCS7B01G328400 chr7A 621563276 621567983 4707 False 603.25 1328 89.1410 11 4798 8 chr7A.!!$F2 4787
3 TraesCS7B01G328400 chr2A 729980166 729983057 2891 False 230.50 351 79.6635 1350 3797 2 chr2A.!!$F2 2447
4 TraesCS7B01G328400 chr2B 725107525 725111236 3711 False 209.65 324 76.9540 1200 3797 2 chr2B.!!$F1 2597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
90 97 0.297525 CACGTACGCGATTGACATGG 59.702 55.0 15.93 0.00 42.00 3.66 F
269 289 0.314935 TGACCGGTAACCTTGTCGTC 59.685 55.0 7.34 0.00 0.00 4.20 F
391 443 0.734253 AAAGCACACGAGCTCGCTAG 60.734 55.0 34.83 25.75 45.89 3.42 F
1681 2263 0.458889 CGACGCTCGGGGTCAATTAA 60.459 55.0 16.96 0.00 44.10 1.40 F
2898 4236 0.680280 TCGCCCTCTCAGGTCAGTAC 60.680 60.0 0.00 0.00 31.93 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1605 2181 0.031994 GCTTGCTTTCAGGCCGAAAA 59.968 50.0 18.79 12.83 43.01 2.29 R
1636 2215 0.248743 ACACAAAGACGTCGCTCGAA 60.249 50.0 10.46 0.00 42.86 3.71 R
1881 2539 0.383124 GCGTCGTCACTGAAAACAGC 60.383 55.0 0.00 0.00 0.00 4.40 R
3581 6176 0.103208 GCTGCAGCGTCTGGTAGTAT 59.897 55.0 25.23 0.00 31.21 2.12 R
3812 6410 0.106335 CATGGCAGCTACTCCTCCAG 59.894 60.0 0.00 0.00 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 97 0.297525 CACGTACGCGATTGACATGG 59.702 55.000 15.93 0.00 42.00 3.66
250 270 0.765510 AGCCCGTGAGTTTCTTTCCT 59.234 50.000 0.00 0.00 0.00 3.36
264 284 2.038033 TCTTTCCTGACCGGTAACCTTG 59.962 50.000 7.34 0.00 0.00 3.61
265 285 1.426751 TTCCTGACCGGTAACCTTGT 58.573 50.000 7.34 0.00 0.00 3.16
269 289 0.314935 TGACCGGTAACCTTGTCGTC 59.685 55.000 7.34 0.00 0.00 4.20
270 290 0.314935 GACCGGTAACCTTGTCGTCA 59.685 55.000 7.34 0.00 0.00 4.35
387 439 2.171940 GCAAAGCACACGAGCTCG 59.828 61.111 33.45 33.45 45.89 5.03
388 440 2.171940 CAAAGCACACGAGCTCGC 59.828 61.111 34.83 19.04 45.89 5.03
389 441 2.029666 AAAGCACACGAGCTCGCT 59.970 55.556 34.83 21.06 45.89 4.93
390 442 1.008875 CAAAGCACACGAGCTCGCTA 61.009 55.000 34.83 0.00 45.89 4.26
391 443 0.734253 AAAGCACACGAGCTCGCTAG 60.734 55.000 34.83 25.75 45.89 3.42
427 479 1.401539 GGAAGCAAACGGTGATCAAGC 60.402 52.381 0.00 0.00 0.00 4.01
472 524 4.155280 CACCCCCAGTTTAGTTTAATCACG 59.845 45.833 0.00 0.00 0.00 4.35
508 560 2.853210 CGCACCGTGTACTGCAAG 59.147 61.111 5.76 0.00 42.29 4.01
562 614 4.023963 GGTTGCTTAGTGTTCCTCTGTTTC 60.024 45.833 0.00 0.00 0.00 2.78
568 620 6.073494 GCTTAGTGTTCCTCTGTTTCTTTCTC 60.073 42.308 0.00 0.00 0.00 2.87
570 622 5.363939 AGTGTTCCTCTGTTTCTTTCTCAG 58.636 41.667 0.00 0.00 0.00 3.35
572 624 4.068599 GTTCCTCTGTTTCTTTCTCAGGG 58.931 47.826 0.00 0.00 0.00 4.45
577 629 1.303317 TTTCTTTCTCAGGGCGGCC 60.303 57.895 22.67 22.67 0.00 6.13
671 1016 4.623932 TGCCGATGCCTTAATATTCTCT 57.376 40.909 0.00 0.00 36.33 3.10
673 1018 4.040339 TGCCGATGCCTTAATATTCTCTCA 59.960 41.667 0.00 0.00 36.33 3.27
675 1020 5.645497 GCCGATGCCTTAATATTCTCTCAAT 59.355 40.000 0.00 0.00 0.00 2.57
676 1021 6.183360 GCCGATGCCTTAATATTCTCTCAATC 60.183 42.308 0.00 0.00 0.00 2.67
678 1023 7.102346 CGATGCCTTAATATTCTCTCAATCCT 58.898 38.462 0.00 0.00 0.00 3.24
679 1024 8.253810 CGATGCCTTAATATTCTCTCAATCCTA 58.746 37.037 0.00 0.00 0.00 2.94
682 1028 6.814146 GCCTTAATATTCTCTCAATCCTACCG 59.186 42.308 0.00 0.00 0.00 4.02
931 1296 3.005539 GGTCAGGCAGGGCAGAGA 61.006 66.667 0.00 0.00 0.00 3.10
955 1324 4.702831 AGGAATAAGCAAGAAGAGCTAGC 58.297 43.478 6.62 6.62 42.53 3.42
958 1327 5.925969 GGAATAAGCAAGAAGAGCTAGCTAG 59.074 44.000 19.38 16.84 42.53 3.42
959 1328 6.462347 GGAATAAGCAAGAAGAGCTAGCTAGT 60.462 42.308 19.38 8.45 42.53 2.57
960 1329 4.817318 AAGCAAGAAGAGCTAGCTAGTT 57.183 40.909 19.38 16.41 42.53 2.24
961 1330 5.923733 AAGCAAGAAGAGCTAGCTAGTTA 57.076 39.130 19.38 0.00 42.53 2.24
972 1341 4.647399 AGCTAGCTAGTTAAGAGTCCAAGG 59.353 45.833 17.69 0.00 0.00 3.61
1291 1663 2.410053 GCGCCGCATACAAAAATCAAAA 59.590 40.909 3.15 0.00 0.00 2.44
1301 1673 7.795272 GCATACAAAAATCAAAACTTGCTTCTG 59.205 33.333 0.00 0.00 0.00 3.02
1302 1674 9.033481 CATACAAAAATCAAAACTTGCTTCTGA 57.967 29.630 0.00 0.00 0.00 3.27
1621 2200 1.652012 CGTTTTCGGCCTGAAAGCA 59.348 52.632 24.62 11.53 46.72 3.91
1652 2231 1.344942 CCCTTCGAGCGACGTCTTTG 61.345 60.000 14.70 5.95 43.13 2.77
1656 2238 0.587768 TCGAGCGACGTCTTTGTGTA 59.412 50.000 14.70 0.00 43.13 2.90
1681 2263 0.458889 CGACGCTCGGGGTCAATTAA 60.459 55.000 16.96 0.00 44.10 1.40
1725 2307 1.913419 CCTAAACCCTCACTTAGCCCA 59.087 52.381 0.00 0.00 0.00 5.36
1746 2330 3.024547 AGCTCTCCGTGTGCTTATTAGA 58.975 45.455 0.00 0.00 42.11 2.10
1780 2420 0.969149 ATCTGCACACCGAGAGACAA 59.031 50.000 0.00 0.00 0.00 3.18
1852 2498 3.397439 GAGCTCTCTGGGCAGCCA 61.397 66.667 15.19 0.00 36.17 4.75
1862 2508 2.962253 GGCAGCCATAGCGACGAC 60.962 66.667 6.55 0.00 46.67 4.34
1879 2537 2.307686 ACGACCCTTCTCTCTCTCTCTT 59.692 50.000 0.00 0.00 0.00 2.85
1880 2538 3.520317 ACGACCCTTCTCTCTCTCTCTTA 59.480 47.826 0.00 0.00 0.00 2.10
1881 2539 4.127171 CGACCCTTCTCTCTCTCTCTTAG 58.873 52.174 0.00 0.00 0.00 2.18
1882 2540 3.883489 GACCCTTCTCTCTCTCTCTTAGC 59.117 52.174 0.00 0.00 0.00 3.09
1883 2541 3.527665 ACCCTTCTCTCTCTCTCTTAGCT 59.472 47.826 0.00 0.00 0.00 3.32
1884 2542 3.885297 CCCTTCTCTCTCTCTCTTAGCTG 59.115 52.174 0.00 0.00 0.00 4.24
1885 2543 4.526970 CCTTCTCTCTCTCTCTTAGCTGT 58.473 47.826 0.00 0.00 0.00 4.40
1887 2545 5.418840 CCTTCTCTCTCTCTCTTAGCTGTTT 59.581 44.000 0.00 0.00 0.00 2.83
1975 2656 4.293626 GAGTTTGTGTGCGCGCGT 62.294 61.111 32.35 7.72 0.00 6.01
2026 2717 2.036992 CACCAGCTAGCTAGGATTGGAG 59.963 54.545 28.87 17.09 0.00 3.86
2033 2724 4.262249 GCTAGCTAGGATTGGAGTAAGTGG 60.262 50.000 22.10 0.00 0.00 4.00
2068 2759 6.309737 CCCAACAAACAACTACTCGTATACTC 59.690 42.308 0.56 0.00 0.00 2.59
2078 2769 5.925397 ACTACTCGTATACTCGTACTGGATG 59.075 44.000 0.56 0.00 0.00 3.51
2080 2771 5.363101 ACTCGTATACTCGTACTGGATGAA 58.637 41.667 0.56 0.00 0.00 2.57
2085 2776 6.347240 CGTATACTCGTACTGGATGAAGTACC 60.347 46.154 8.50 0.00 46.53 3.34
2139 2830 7.503566 AGCAGTATTAATGTCATTTGCTACCAT 59.496 33.333 16.51 0.00 38.73 3.55
2173 2913 7.661847 CCACTTGTAGGAGAGTAACATTCTTTT 59.338 37.037 0.00 0.00 0.00 2.27
2175 2915 7.661847 ACTTGTAGGAGAGTAACATTCTTTTGG 59.338 37.037 0.00 0.00 0.00 3.28
2201 2941 3.745975 TCATCGCACAGTTTTGGAGTAAG 59.254 43.478 0.00 0.00 0.00 2.34
2203 2943 4.325028 TCGCACAGTTTTGGAGTAAGTA 57.675 40.909 0.00 0.00 0.00 2.24
2207 2947 5.007332 CGCACAGTTTTGGAGTAAGTAGTTT 59.993 40.000 0.00 0.00 0.00 2.66
2607 3526 2.873170 TTATTGAGACGCGCAAGTTG 57.127 45.000 5.73 0.00 41.68 3.16
2691 3981 8.837788 TGTAATAATCTCACTGCTAATGATGG 57.162 34.615 0.00 0.00 0.00 3.51
2852 4190 0.946221 CTCAACAAGCTCTTCGCCGT 60.946 55.000 0.00 0.00 40.39 5.68
2898 4236 0.680280 TCGCCCTCTCAGGTCAGTAC 60.680 60.000 0.00 0.00 31.93 2.73
2899 4237 1.810532 GCCCTCTCAGGTCAGTACG 59.189 63.158 0.00 0.00 31.93 3.67
2900 4238 1.668101 GCCCTCTCAGGTCAGTACGG 61.668 65.000 0.00 0.00 31.93 4.02
2906 4687 2.683933 AGGTCAGTACGGGGGCTG 60.684 66.667 0.00 0.00 0.00 4.85
2934 4715 7.514721 TGATTGATTGATTGATCATCTCCTCA 58.485 34.615 0.00 0.93 36.05 3.86
2980 4775 5.071788 ACATTCCCTCTGAATTATTAGCCGA 59.928 40.000 0.00 0.00 41.85 5.54
3026 4834 2.672996 GCAAGTCCCATGCGTGGT 60.673 61.111 23.39 2.14 44.48 4.16
3102 4910 4.524714 ACTTCTCATATCCCCATCAGTACG 59.475 45.833 0.00 0.00 0.00 3.67
3108 4916 5.306937 TCATATCCCCATCAGTACGACATTT 59.693 40.000 0.00 0.00 0.00 2.32
3135 4943 1.337447 ACAAGTGTACCAACCGATCCG 60.337 52.381 0.00 0.00 0.00 4.18
3143 4951 1.951130 CAACCGATCCGATCAGGCG 60.951 63.158 15.14 6.89 40.77 5.52
3187 4995 3.722147 CCTACTGCATGCTCGTAGAAAT 58.278 45.455 31.49 8.67 34.09 2.17
3254 5096 2.254951 CGCGTGCAAGCCATTTCA 59.745 55.556 19.11 0.00 0.00 2.69
3265 5107 4.232221 CAAGCCATTTCATTGTCACTGAC 58.768 43.478 1.86 1.86 0.00 3.51
3269 5111 3.822735 CCATTTCATTGTCACTGACCAGT 59.177 43.478 6.72 0.00 43.61 4.00
3288 5219 2.675767 TGACTCGTCACGACTACAAC 57.324 50.000 0.00 0.00 34.14 3.32
3291 5222 3.162068 GACTCGTCACGACTACAACATC 58.838 50.000 0.00 0.00 0.00 3.06
3293 5224 2.909244 CTCGTCACGACTACAACATCAC 59.091 50.000 0.00 0.00 0.00 3.06
3299 5230 4.703093 TCACGACTACAACATCACATCCTA 59.297 41.667 0.00 0.00 0.00 2.94
3302 5233 5.037385 CGACTACAACATCACATCCTACTG 58.963 45.833 0.00 0.00 0.00 2.74
3305 5236 7.255139 CGACTACAACATCACATCCTACTGATA 60.255 40.741 0.00 0.00 30.56 2.15
3306 5237 8.484214 ACTACAACATCACATCCTACTGATAT 57.516 34.615 0.00 0.00 30.56 1.63
3307 5238 8.928448 ACTACAACATCACATCCTACTGATATT 58.072 33.333 0.00 0.00 30.56 1.28
3345 5276 8.213518 AGTATTGACAACTGCCAGTAATAATG 57.786 34.615 0.00 0.00 0.00 1.90
3346 5277 4.963276 TGACAACTGCCAGTAATAATGC 57.037 40.909 0.00 0.00 0.00 3.56
3347 5278 4.588899 TGACAACTGCCAGTAATAATGCT 58.411 39.130 0.00 0.00 0.00 3.79
3348 5279 4.395854 TGACAACTGCCAGTAATAATGCTG 59.604 41.667 0.00 0.00 38.83 4.41
3349 5280 4.335416 ACAACTGCCAGTAATAATGCTGT 58.665 39.130 0.00 0.00 37.56 4.40
3350 5281 4.766891 ACAACTGCCAGTAATAATGCTGTT 59.233 37.500 0.00 0.00 43.62 3.16
3526 6121 1.666553 CGTGCCCGCTCAACTACAA 60.667 57.895 0.00 0.00 0.00 2.41
3581 6176 1.292061 CCAACAAGTTCGACAACGGA 58.708 50.000 0.00 0.00 37.61 4.69
3779 6374 4.570663 GGCGAGATCCGACGGGTG 62.571 72.222 15.25 0.00 41.76 4.61
3819 6417 3.313874 GCTTGCCTAGCTGGAGGA 58.686 61.111 6.73 0.00 46.77 3.71
3820 6418 1.145819 GCTTGCCTAGCTGGAGGAG 59.854 63.158 6.73 0.00 46.77 3.69
3829 6431 2.362369 GCTGGAGGAGTAGCTGCCA 61.362 63.158 0.00 0.00 36.99 4.92
3957 6575 5.066375 GCTCACACAAGCCATATTGTCATAA 59.934 40.000 0.00 0.00 41.41 1.90
3975 6593 0.178975 AACCGATTTGTTCCAGCCCA 60.179 50.000 0.00 0.00 0.00 5.36
3989 6607 4.419282 TCCAGCCCAATTCTTTTCTTCAT 58.581 39.130 0.00 0.00 0.00 2.57
4046 6668 3.495100 GGGATAGGAGGCACAGTTACATG 60.495 52.174 0.00 0.00 0.00 3.21
4137 6762 4.411256 TGAAACAGTTACTCCCTTCGTT 57.589 40.909 0.00 0.00 0.00 3.85
4138 6763 4.374399 TGAAACAGTTACTCCCTTCGTTC 58.626 43.478 0.00 0.00 0.00 3.95
4139 6764 2.719426 ACAGTTACTCCCTTCGTTCG 57.281 50.000 0.00 0.00 0.00 3.95
4140 6765 1.271656 ACAGTTACTCCCTTCGTTCGG 59.728 52.381 0.00 0.00 0.00 4.30
4141 6766 1.542915 CAGTTACTCCCTTCGTTCGGA 59.457 52.381 0.00 0.00 0.00 4.55
4142 6767 2.029649 CAGTTACTCCCTTCGTTCGGAA 60.030 50.000 0.00 0.00 0.00 4.30
4143 6768 2.830321 AGTTACTCCCTTCGTTCGGAAT 59.170 45.455 0.00 0.00 33.26 3.01
4144 6769 3.260128 AGTTACTCCCTTCGTTCGGAATT 59.740 43.478 0.00 0.00 33.26 2.17
4145 6770 4.463891 AGTTACTCCCTTCGTTCGGAATTA 59.536 41.667 0.00 0.00 33.26 1.40
4146 6771 3.242549 ACTCCCTTCGTTCGGAATTAC 57.757 47.619 0.00 0.00 33.26 1.89
4147 6772 2.830321 ACTCCCTTCGTTCGGAATTACT 59.170 45.455 0.00 0.00 33.26 2.24
4148 6773 3.260128 ACTCCCTTCGTTCGGAATTACTT 59.740 43.478 0.00 0.00 33.26 2.24
4149 6774 3.592059 TCCCTTCGTTCGGAATTACTTG 58.408 45.455 0.00 0.00 33.26 3.16
4150 6775 3.007182 TCCCTTCGTTCGGAATTACTTGT 59.993 43.478 0.00 0.00 33.26 3.16
4151 6776 3.370061 CCCTTCGTTCGGAATTACTTGTC 59.630 47.826 0.00 0.00 33.26 3.18
4152 6777 3.060363 CCTTCGTTCGGAATTACTTGTCG 59.940 47.826 0.00 0.00 33.26 4.35
4153 6778 3.287312 TCGTTCGGAATTACTTGTCGT 57.713 42.857 0.00 0.00 0.00 4.34
4154 6779 2.981805 TCGTTCGGAATTACTTGTCGTG 59.018 45.455 0.00 0.00 0.00 4.35
4155 6780 2.981805 CGTTCGGAATTACTTGTCGTGA 59.018 45.455 0.00 0.00 0.00 4.35
4156 6781 3.426191 CGTTCGGAATTACTTGTCGTGAA 59.574 43.478 0.00 0.00 0.00 3.18
4157 6782 4.084952 CGTTCGGAATTACTTGTCGTGAAA 60.085 41.667 0.00 0.00 0.00 2.69
4158 6783 5.556758 CGTTCGGAATTACTTGTCGTGAAAA 60.557 40.000 0.00 0.00 0.00 2.29
4159 6784 6.368213 GTTCGGAATTACTTGTCGTGAAAAT 58.632 36.000 0.00 0.00 0.00 1.82
4160 6785 5.922546 TCGGAATTACTTGTCGTGAAAATG 58.077 37.500 0.00 0.00 0.00 2.32
4161 6786 5.086058 CGGAATTACTTGTCGTGAAAATGG 58.914 41.667 0.00 0.00 0.00 3.16
4162 6787 5.106869 CGGAATTACTTGTCGTGAAAATGGA 60.107 40.000 0.00 0.00 0.00 3.41
4163 6788 6.403200 CGGAATTACTTGTCGTGAAAATGGAT 60.403 38.462 0.00 0.00 0.00 3.41
4164 6789 6.747280 GGAATTACTTGTCGTGAAAATGGATG 59.253 38.462 0.00 0.00 0.00 3.51
4165 6790 6.817765 ATTACTTGTCGTGAAAATGGATGT 57.182 33.333 0.00 0.00 0.00 3.06
4166 6791 7.915293 ATTACTTGTCGTGAAAATGGATGTA 57.085 32.000 0.00 0.00 0.00 2.29
4167 6792 7.915293 TTACTTGTCGTGAAAATGGATGTAT 57.085 32.000 0.00 0.00 0.00 2.29
4168 6793 6.422776 ACTTGTCGTGAAAATGGATGTATC 57.577 37.500 0.00 0.00 0.00 2.24
4169 6794 6.173339 ACTTGTCGTGAAAATGGATGTATCT 58.827 36.000 0.00 0.00 0.00 1.98
4170 6795 7.327975 ACTTGTCGTGAAAATGGATGTATCTA 58.672 34.615 0.00 0.00 0.00 1.98
4171 6796 7.822334 ACTTGTCGTGAAAATGGATGTATCTAA 59.178 33.333 0.00 0.00 0.00 2.10
4172 6797 8.554835 TTGTCGTGAAAATGGATGTATCTAAA 57.445 30.769 0.00 0.00 0.00 1.85
4173 6798 7.970384 TGTCGTGAAAATGGATGTATCTAAAC 58.030 34.615 0.00 0.00 0.00 2.01
4174 6799 7.117454 GTCGTGAAAATGGATGTATCTAAACG 58.883 38.462 0.00 0.00 0.00 3.60
4175 6800 6.814644 TCGTGAAAATGGATGTATCTAAACGT 59.185 34.615 0.00 0.00 0.00 3.99
4176 6801 7.975058 TCGTGAAAATGGATGTATCTAAACGTA 59.025 33.333 0.00 0.00 0.00 3.57
4177 6802 8.761497 CGTGAAAATGGATGTATCTAAACGTAT 58.239 33.333 0.00 0.00 0.00 3.06
4218 6843 6.897259 TTATTTCCGAGACAAGTAATTCCG 57.103 37.500 0.00 0.00 0.00 4.30
4219 6844 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
4220 6845 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
4221 6846 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
4222 6847 2.928116 CCGAGACAAGTAATTCCGAACC 59.072 50.000 0.00 0.00 0.00 3.62
4223 6848 2.597305 CGAGACAAGTAATTCCGAACCG 59.403 50.000 0.00 0.00 0.00 4.44
4224 6849 3.671433 CGAGACAAGTAATTCCGAACCGA 60.671 47.826 0.00 0.00 0.00 4.69
4225 6850 3.846360 AGACAAGTAATTCCGAACCGAG 58.154 45.455 0.00 0.00 0.00 4.63
4226 6851 2.928116 GACAAGTAATTCCGAACCGAGG 59.072 50.000 0.00 0.00 0.00 4.63
4227 6852 2.564062 ACAAGTAATTCCGAACCGAGGA 59.436 45.455 0.00 0.00 35.69 3.71
4242 6867 6.417044 CGAACCGAGGAAGTACATGTTAATAG 59.583 42.308 2.30 0.00 0.00 1.73
4249 6874 8.012957 AGGAAGTACATGTTAATAGAGTGGAG 57.987 38.462 2.30 0.00 0.00 3.86
4250 6875 7.620094 AGGAAGTACATGTTAATAGAGTGGAGT 59.380 37.037 2.30 0.00 0.00 3.85
4353 6990 4.868734 GGTCCAAGTTTCTCATAACTACGG 59.131 45.833 0.00 0.00 37.37 4.02
4384 7021 2.481795 GCTGTGAACACCTGCAACAAAT 60.482 45.455 12.39 0.00 32.62 2.32
4412 7049 7.819644 TGTGATATTTTCAGTCAAACATCCAG 58.180 34.615 0.00 0.00 34.17 3.86
4422 7059 2.373169 TCAAACATCCAGAGCTCCAAGT 59.627 45.455 10.93 0.00 0.00 3.16
4424 7061 4.041567 TCAAACATCCAGAGCTCCAAGTAA 59.958 41.667 10.93 0.00 0.00 2.24
4425 7062 4.640771 AACATCCAGAGCTCCAAGTAAA 57.359 40.909 10.93 0.00 0.00 2.01
4436 7076 5.246307 AGCTCCAAGTAAACCTCAATACAC 58.754 41.667 0.00 0.00 0.00 2.90
4446 7086 2.714250 ACCTCAATACACCCAGGAACAA 59.286 45.455 0.00 0.00 0.00 2.83
4447 7087 3.081804 CCTCAATACACCCAGGAACAAC 58.918 50.000 0.00 0.00 0.00 3.32
4448 7088 3.497763 CCTCAATACACCCAGGAACAACA 60.498 47.826 0.00 0.00 0.00 3.33
4449 7089 3.750371 TCAATACACCCAGGAACAACAG 58.250 45.455 0.00 0.00 0.00 3.16
4450 7090 3.137544 TCAATACACCCAGGAACAACAGT 59.862 43.478 0.00 0.00 0.00 3.55
4451 7091 4.348461 TCAATACACCCAGGAACAACAGTA 59.652 41.667 0.00 0.00 0.00 2.74
4452 7092 5.013704 TCAATACACCCAGGAACAACAGTAT 59.986 40.000 0.00 0.00 0.00 2.12
4453 7093 3.140325 ACACCCAGGAACAACAGTATG 57.860 47.619 0.00 0.00 46.00 2.39
4454 7094 1.812571 CACCCAGGAACAACAGTATGC 59.187 52.381 0.00 0.00 42.53 3.14
4455 7095 1.705186 ACCCAGGAACAACAGTATGCT 59.295 47.619 0.00 0.00 42.53 3.79
4468 7108 3.206150 CAGTATGCTGTCCAATACACCC 58.794 50.000 2.12 0.00 37.92 4.61
4469 7109 2.843730 AGTATGCTGTCCAATACACCCA 59.156 45.455 0.00 0.00 33.45 4.51
4470 7110 2.897271 ATGCTGTCCAATACACCCAA 57.103 45.000 0.00 0.00 33.45 4.12
4471 7111 2.198827 TGCTGTCCAATACACCCAAG 57.801 50.000 0.00 0.00 33.45 3.61
4472 7112 1.702401 TGCTGTCCAATACACCCAAGA 59.298 47.619 0.00 0.00 33.45 3.02
4473 7113 2.107378 TGCTGTCCAATACACCCAAGAA 59.893 45.455 0.00 0.00 33.45 2.52
4474 7114 2.488153 GCTGTCCAATACACCCAAGAAC 59.512 50.000 0.00 0.00 33.45 3.01
4475 7115 3.750371 CTGTCCAATACACCCAAGAACA 58.250 45.455 0.00 0.00 33.45 3.18
4476 7116 3.750371 TGTCCAATACACCCAAGAACAG 58.250 45.455 0.00 0.00 31.43 3.16
4477 7117 3.081804 GTCCAATACACCCAAGAACAGG 58.918 50.000 0.00 0.00 0.00 4.00
4478 7118 2.983192 TCCAATACACCCAAGAACAGGA 59.017 45.455 0.00 0.00 0.00 3.86
4479 7119 3.009033 TCCAATACACCCAAGAACAGGAG 59.991 47.826 0.00 0.00 0.00 3.69
4480 7120 3.244911 CCAATACACCCAAGAACAGGAGT 60.245 47.826 0.00 0.00 0.00 3.85
4481 7121 3.703001 ATACACCCAAGAACAGGAGTG 57.297 47.619 0.00 0.00 35.08 3.51
4482 7122 0.474184 ACACCCAAGAACAGGAGTGG 59.526 55.000 0.00 0.00 33.99 4.00
4483 7123 0.890996 CACCCAAGAACAGGAGTGGC 60.891 60.000 0.00 0.00 0.00 5.01
4484 7124 1.062488 ACCCAAGAACAGGAGTGGCT 61.062 55.000 0.00 0.00 0.00 4.75
4485 7125 0.607489 CCCAAGAACAGGAGTGGCTG 60.607 60.000 0.00 0.00 0.00 4.85
4486 7126 1.239968 CCAAGAACAGGAGTGGCTGC 61.240 60.000 0.00 0.00 0.00 5.25
4487 7127 0.535780 CAAGAACAGGAGTGGCTGCA 60.536 55.000 0.50 0.00 0.00 4.41
4488 7128 0.403271 AAGAACAGGAGTGGCTGCAT 59.597 50.000 0.50 0.00 0.00 3.96
4489 7129 0.322277 AGAACAGGAGTGGCTGCATG 60.322 55.000 0.50 0.00 0.00 4.06
4490 7130 1.930908 GAACAGGAGTGGCTGCATGC 61.931 60.000 11.82 11.82 41.94 4.06
4491 7131 2.360726 CAGGAGTGGCTGCATGCA 60.361 61.111 21.29 21.29 45.15 3.96
4492 7132 1.753078 CAGGAGTGGCTGCATGCAT 60.753 57.895 22.97 5.46 45.15 3.96
4493 7133 1.453379 AGGAGTGGCTGCATGCATC 60.453 57.895 22.97 17.75 45.15 3.91
4494 7134 2.713770 GAGTGGCTGCATGCATCG 59.286 61.111 22.97 12.00 45.15 3.84
4495 7135 3.465296 GAGTGGCTGCATGCATCGC 62.465 63.158 22.97 21.54 45.15 4.58
4496 7136 4.564116 GTGGCTGCATGCATCGCC 62.564 66.667 33.23 33.23 45.15 5.54
4499 7139 4.266070 GCTGCATGCATCGCCCAG 62.266 66.667 22.97 8.76 42.31 4.45
4500 7140 2.515290 CTGCATGCATCGCCCAGA 60.515 61.111 22.97 0.00 0.00 3.86
4501 7141 1.897137 CTGCATGCATCGCCCAGAT 60.897 57.895 22.97 0.00 41.01 2.90
4508 7148 4.794199 ATCGCCCAGATGCAGATG 57.206 55.556 0.00 0.00 38.36 2.90
4509 7149 1.600076 ATCGCCCAGATGCAGATGC 60.600 57.895 0.00 0.00 38.36 3.91
4510 7150 3.285215 CGCCCAGATGCAGATGCC 61.285 66.667 1.72 0.00 41.18 4.40
4511 7151 3.285215 GCCCAGATGCAGATGCCG 61.285 66.667 1.72 0.00 41.18 5.69
4512 7152 2.593725 CCCAGATGCAGATGCCGG 60.594 66.667 0.00 0.00 41.18 6.13
4513 7153 2.593725 CCAGATGCAGATGCCGGG 60.594 66.667 2.18 0.00 41.18 5.73
4514 7154 2.593725 CAGATGCAGATGCCGGGG 60.594 66.667 2.18 0.00 41.18 5.73
4515 7155 3.882326 AGATGCAGATGCCGGGGG 61.882 66.667 2.18 0.00 41.18 5.40
4516 7156 4.195334 GATGCAGATGCCGGGGGT 62.195 66.667 2.18 0.00 41.18 4.95
4517 7157 4.195334 ATGCAGATGCCGGGGGTC 62.195 66.667 2.18 0.00 41.18 4.46
4520 7160 3.866582 CAGATGCCGGGGGTCCTC 61.867 72.222 2.18 0.00 0.00 3.71
4529 7169 3.742730 GGGGTCCTCCTCCTTTCC 58.257 66.667 0.00 0.00 35.33 3.13
4530 7170 1.083141 GGGGTCCTCCTCCTTTCCT 59.917 63.158 0.00 0.00 35.33 3.36
4531 7171 0.342313 GGGGTCCTCCTCCTTTCCTA 59.658 60.000 0.00 0.00 35.33 2.94
4532 7172 1.274242 GGGGTCCTCCTCCTTTCCTAA 60.274 57.143 0.00 0.00 35.33 2.69
4533 7173 2.558974 GGGTCCTCCTCCTTTCCTAAA 58.441 52.381 0.00 0.00 0.00 1.85
4534 7174 2.917600 GGGTCCTCCTCCTTTCCTAAAA 59.082 50.000 0.00 0.00 0.00 1.52
4535 7175 3.332783 GGGTCCTCCTCCTTTCCTAAAAA 59.667 47.826 0.00 0.00 0.00 1.94
4558 7198 1.928868 AAACCAGGAGCAGGAAATGG 58.071 50.000 0.00 0.00 37.07 3.16
4562 7202 1.133976 CCAGGAGCAGGAAATGGTAGG 60.134 57.143 0.00 0.00 40.53 3.18
4568 7208 2.378547 AGCAGGAAATGGTAGGGAACAA 59.621 45.455 0.00 0.00 38.04 2.83
4593 7233 6.344500 CAGTATGCTGTCCAAGTAAAGAGAT 58.656 40.000 2.12 0.00 37.92 2.75
4629 7269 4.122776 CAACACACAAGAGCAACTCTAGT 58.877 43.478 0.00 0.00 40.28 2.57
4634 7274 4.082463 ACACAAGAGCAACTCTAGTAGAGC 60.082 45.833 24.37 13.39 46.12 4.09
4636 7276 4.157656 ACAAGAGCAACTCTAGTAGAGCTG 59.842 45.833 24.37 22.79 46.12 4.24
4637 7277 3.963129 AGAGCAACTCTAGTAGAGCTGT 58.037 45.455 24.62 15.16 46.12 4.40
4638 7278 3.945285 AGAGCAACTCTAGTAGAGCTGTC 59.055 47.826 24.62 20.35 46.12 3.51
4639 7279 2.680841 AGCAACTCTAGTAGAGCTGTCG 59.319 50.000 24.62 12.54 46.12 4.35
4640 7280 2.420722 GCAACTCTAGTAGAGCTGTCGT 59.579 50.000 24.62 6.97 46.12 4.34
4641 7281 3.729462 GCAACTCTAGTAGAGCTGTCGTG 60.729 52.174 24.62 15.34 46.12 4.35
4642 7282 3.337694 ACTCTAGTAGAGCTGTCGTGT 57.662 47.619 24.37 3.14 46.12 4.49
4663 7307 4.468868 TGTCAGCCTCCATATGGATATGAG 59.531 45.833 24.73 12.44 44.46 2.90
4671 7315 6.239430 CCTCCATATGGATATGAGGATTACCG 60.239 46.154 24.73 7.78 44.46 4.02
4682 7326 1.092348 GGATTACCGAGCCAAACCAC 58.908 55.000 0.00 0.00 32.68 4.16
4716 7360 3.582208 CTCCATAAGAGCTGCCTCCTTAT 59.418 47.826 0.00 11.36 38.96 1.73
4722 7366 4.035612 AGAGCTGCCTCCTTATCGTATA 57.964 45.455 0.00 0.00 38.96 1.47
4730 7374 4.321824 GCCTCCTTATCGTATAACCCACTC 60.322 50.000 0.00 0.00 0.00 3.51
4732 7376 3.822735 TCCTTATCGTATAACCCACTCGG 59.177 47.826 0.00 0.00 37.81 4.63
4748 7392 0.323816 TCGGCAGTGAGACATCCTCT 60.324 55.000 0.00 0.00 42.44 3.69
4757 7401 4.104738 AGTGAGACATCCTCTTTTTCCCAA 59.895 41.667 0.00 0.00 42.44 4.12
4766 7410 6.401537 TCCTCTTTTTCCCAATCTCCAATA 57.598 37.500 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.532834 GTCTGGACTCTGGAACTCTAGAT 58.467 47.826 0.00 0.00 32.93 1.98
3 4 2.680841 CGTCTGGACTCTGGAACTCTAG 59.319 54.545 0.00 0.00 0.00 2.43
7 8 0.827925 TGCGTCTGGACTCTGGAACT 60.828 55.000 0.00 0.00 0.00 3.01
8 9 0.033504 TTGCGTCTGGACTCTGGAAC 59.966 55.000 0.00 0.00 0.00 3.62
9 10 0.033504 GTTGCGTCTGGACTCTGGAA 59.966 55.000 0.00 0.00 0.00 3.53
10 11 1.112916 TGTTGCGTCTGGACTCTGGA 61.113 55.000 0.00 0.00 0.00 3.86
11 12 0.036952 ATGTTGCGTCTGGACTCTGG 60.037 55.000 0.00 0.00 0.00 3.86
12 13 1.067283 AGATGTTGCGTCTGGACTCTG 60.067 52.381 0.00 0.00 0.00 3.35
13 14 1.261480 AGATGTTGCGTCTGGACTCT 58.739 50.000 0.00 0.00 0.00 3.24
14 15 2.086054 AAGATGTTGCGTCTGGACTC 57.914 50.000 0.00 0.00 29.33 3.36
15 16 2.037772 AGAAAGATGTTGCGTCTGGACT 59.962 45.455 0.00 0.00 29.33 3.85
16 17 2.158449 CAGAAAGATGTTGCGTCTGGAC 59.842 50.000 0.00 0.00 33.57 4.02
17 18 2.416747 CAGAAAGATGTTGCGTCTGGA 58.583 47.619 0.00 0.00 33.57 3.86
90 97 3.997021 ACTGTGCAATCAGTTAGCTGTAC 59.003 43.478 6.47 0.00 44.92 2.90
241 261 2.707257 AGGTTACCGGTCAGGAAAGAAA 59.293 45.455 12.40 0.00 45.00 2.52
250 270 0.314935 GACGACAAGGTTACCGGTCA 59.685 55.000 12.40 0.00 34.17 4.02
264 284 1.727213 CGAGTACCGAAACCTGACGAC 60.727 57.143 0.00 0.00 41.76 4.34
265 285 0.518636 CGAGTACCGAAACCTGACGA 59.481 55.000 0.00 0.00 41.76 4.20
295 329 2.067091 ATTTCGGCGCGACGGATAGA 62.067 55.000 36.61 12.35 34.89 1.98
396 448 4.819761 TGCTTCCGCGGCAGCTAG 62.820 66.667 41.34 23.63 42.32 3.42
397 449 3.892740 TTTGCTTCCGCGGCAGCTA 62.893 57.895 41.34 34.62 40.90 3.32
400 452 4.741781 CGTTTGCTTCCGCGGCAG 62.742 66.667 23.51 22.24 40.90 4.85
427 479 4.899239 GACGATCCCAGCGGCCAG 62.899 72.222 2.24 0.00 0.00 4.85
455 507 6.961576 TGAAACCCGTGATTAAACTAAACTG 58.038 36.000 0.00 0.00 0.00 3.16
457 509 5.854866 GCTGAAACCCGTGATTAAACTAAAC 59.145 40.000 0.00 0.00 0.00 2.01
458 510 5.531659 TGCTGAAACCCGTGATTAAACTAAA 59.468 36.000 0.00 0.00 0.00 1.85
459 511 5.064558 TGCTGAAACCCGTGATTAAACTAA 58.935 37.500 0.00 0.00 0.00 2.24
472 524 0.671472 GCAGGCATTTGCTGAAACCC 60.671 55.000 2.12 0.00 40.89 4.11
562 614 2.437359 CTGGCCGCCCTGAGAAAG 60.437 66.667 7.03 0.00 32.15 2.62
568 620 4.247380 GATCCTCTGGCCGCCCTG 62.247 72.222 7.03 0.00 0.00 4.45
570 622 4.554036 GTGATCCTCTGGCCGCCC 62.554 72.222 7.03 0.00 0.00 6.13
572 624 2.202987 CTGTGATCCTCTGGCCGC 60.203 66.667 0.00 0.00 0.00 6.53
577 629 0.742281 CCAACGGCTGTGATCCTCTG 60.742 60.000 0.00 0.00 0.00 3.35
601 673 1.040339 AAACAAGAGCCCAACGCCAA 61.040 50.000 0.00 0.00 38.78 4.52
612 684 1.079503 GGCTCCGCACTAAACAAGAG 58.920 55.000 0.00 0.00 0.00 2.85
614 686 0.669318 TCGGCTCCGCACTAAACAAG 60.669 55.000 2.96 0.00 39.59 3.16
671 1016 0.813184 GTGGACGACGGTAGGATTGA 59.187 55.000 0.00 0.00 0.00 2.57
673 1018 1.407979 GATGTGGACGACGGTAGGATT 59.592 52.381 0.00 0.00 0.00 3.01
675 1020 0.322726 TGATGTGGACGACGGTAGGA 60.323 55.000 0.00 0.00 0.00 2.94
676 1021 0.744874 ATGATGTGGACGACGGTAGG 59.255 55.000 0.00 0.00 0.00 3.18
678 1023 1.737696 GCAATGATGTGGACGACGGTA 60.738 52.381 0.00 0.00 0.00 4.02
679 1024 1.019278 GCAATGATGTGGACGACGGT 61.019 55.000 0.00 0.00 0.00 4.83
682 1028 0.097674 GCTGCAATGATGTGGACGAC 59.902 55.000 0.00 0.00 0.00 4.34
773 1121 4.521062 GATGAGCTGGGCGTCGCT 62.521 66.667 18.11 0.00 39.61 4.93
931 1296 5.453198 GCTAGCTCTTCTTGCTTATTCCTCT 60.453 44.000 7.70 0.00 41.46 3.69
955 1324 3.707102 CCCTCCCTTGGACTCTTAACTAG 59.293 52.174 0.00 0.00 0.00 2.57
958 1327 2.502130 CTCCCTCCCTTGGACTCTTAAC 59.498 54.545 0.00 0.00 0.00 2.01
959 1328 2.385765 TCTCCCTCCCTTGGACTCTTAA 59.614 50.000 0.00 0.00 0.00 1.85
960 1329 2.008400 TCTCCCTCCCTTGGACTCTTA 58.992 52.381 0.00 0.00 0.00 2.10
961 1330 0.793617 TCTCCCTCCCTTGGACTCTT 59.206 55.000 0.00 0.00 0.00 2.85
972 1341 2.686835 AGCTGCCTGTCTCCCTCC 60.687 66.667 0.00 0.00 0.00 4.30
1291 1663 4.202441 ACAGTCAAACATCAGAAGCAAGT 58.798 39.130 0.00 0.00 0.00 3.16
1301 1673 4.146961 CGATGCAAACAACAGTCAAACATC 59.853 41.667 0.00 0.00 0.00 3.06
1302 1674 4.043750 CGATGCAAACAACAGTCAAACAT 58.956 39.130 0.00 0.00 0.00 2.71
1343 1715 1.000521 CCCCTGCACACACCATCAT 60.001 57.895 0.00 0.00 0.00 2.45
1485 1864 0.036022 GAGACCTTGTTGGAGCAGCT 59.964 55.000 0.00 0.00 39.71 4.24
1570 1956 1.447314 GAGACGGGGTTTGCTACGG 60.447 63.158 0.00 0.00 0.00 4.02
1572 1958 0.896226 AGAGAGACGGGGTTTGCTAC 59.104 55.000 0.00 0.00 0.00 3.58
1577 1963 0.966370 CGGAGAGAGAGACGGGGTTT 60.966 60.000 0.00 0.00 0.00 3.27
1579 1965 2.272797 CGGAGAGAGAGACGGGGT 59.727 66.667 0.00 0.00 0.00 4.95
1605 2181 0.031994 GCTTGCTTTCAGGCCGAAAA 59.968 50.000 18.79 12.83 43.01 2.29
1635 2214 0.431233 CACAAAGACGTCGCTCGAAG 59.569 55.000 10.46 3.82 42.86 3.79
1636 2215 0.248743 ACACAAAGACGTCGCTCGAA 60.249 50.000 10.46 0.00 42.86 3.71
1652 2231 2.576317 GAGCGTCGCCGTCTACAC 60.576 66.667 14.86 0.00 36.15 2.90
1668 2250 1.557832 CCACCTCTTAATTGACCCCGA 59.442 52.381 0.00 0.00 0.00 5.14
1681 2263 3.652581 GCTTTGTTAGCCCACCTCT 57.347 52.632 0.00 0.00 44.48 3.69
1725 2307 3.024547 TCTAATAAGCACACGGAGAGCT 58.975 45.455 0.00 0.00 41.03 4.09
1738 2320 2.059541 GGCGCGGTTAGCTCTAATAAG 58.940 52.381 8.83 0.00 45.59 1.73
1780 2420 1.701847 GTCAGCCCCATCCATCATAGT 59.298 52.381 0.00 0.00 0.00 2.12
1831 2477 3.388703 CTGCCCAGAGAGCTCCAGC 62.389 68.421 10.93 7.08 42.49 4.85
1852 2498 1.134037 AGAGAGAAGGGTCGTCGCTAT 60.134 52.381 0.00 0.00 35.80 2.97
1862 2508 3.885297 CAGCTAAGAGAGAGAGAGAAGGG 59.115 52.174 0.00 0.00 0.00 3.95
1879 2537 2.390938 CGTCGTCACTGAAAACAGCTA 58.609 47.619 0.00 0.00 0.00 3.32
1880 2538 1.209128 CGTCGTCACTGAAAACAGCT 58.791 50.000 0.00 0.00 0.00 4.24
1881 2539 0.383124 GCGTCGTCACTGAAAACAGC 60.383 55.000 0.00 0.00 0.00 4.40
1882 2540 0.927537 TGCGTCGTCACTGAAAACAG 59.072 50.000 0.00 0.00 0.00 3.16
1883 2541 1.360820 TTGCGTCGTCACTGAAAACA 58.639 45.000 0.00 0.00 0.00 2.83
1884 2542 2.663279 ATTGCGTCGTCACTGAAAAC 57.337 45.000 0.00 0.00 0.00 2.43
1885 2543 3.362207 CGTAATTGCGTCGTCACTGAAAA 60.362 43.478 7.86 0.00 0.00 2.29
1887 2545 1.717113 CGTAATTGCGTCGTCACTGAA 59.283 47.619 7.86 0.00 0.00 3.02
2040 2731 0.666374 AGTAGTTGTTTGTTGGGCGC 59.334 50.000 0.00 0.00 0.00 6.53
2078 2769 3.053470 AGTCCTCCTCCTACTGGTACTTC 60.053 52.174 0.00 0.00 34.23 3.01
2080 2771 2.575713 AGTCCTCCTCCTACTGGTACT 58.424 52.381 0.00 0.00 34.23 2.73
2085 2776 3.970842 AGTTGTAGTCCTCCTCCTACTG 58.029 50.000 0.00 0.00 35.62 2.74
2087 2778 5.370875 TCTAGTTGTAGTCCTCCTCCTAC 57.629 47.826 0.00 0.00 35.25 3.18
2090 2781 6.239092 GCTTAATCTAGTTGTAGTCCTCCTCC 60.239 46.154 0.00 0.00 0.00 4.30
2091 2782 6.321690 TGCTTAATCTAGTTGTAGTCCTCCTC 59.678 42.308 0.00 0.00 0.00 3.71
2129 2820 3.646162 AGTGGGATCGATATGGTAGCAAA 59.354 43.478 0.00 0.00 0.00 3.68
2139 2830 4.141228 ACTCTCCTACAAGTGGGATCGATA 60.141 45.833 5.73 0.00 39.59 2.92
2173 2913 1.686355 AAACTGTGCGATGAAACCCA 58.314 45.000 0.00 0.00 0.00 4.51
2175 2915 2.034053 TCCAAAACTGTGCGATGAAACC 59.966 45.455 0.00 0.00 0.00 3.27
2201 2941 3.562557 TCCCAACTTTTCGAGCAAACTAC 59.437 43.478 0.00 0.00 0.00 2.73
2203 2943 2.650322 TCCCAACTTTTCGAGCAAACT 58.350 42.857 0.00 0.00 0.00 2.66
2207 2947 2.859165 AGATCCCAACTTTTCGAGCA 57.141 45.000 0.00 0.00 0.00 4.26
2410 3310 0.411452 TCAGGTCAGAAGAGGAGGCT 59.589 55.000 0.00 0.00 0.00 4.58
2487 3387 1.135228 GGTTCATTTACGCGGCCAAAT 60.135 47.619 12.47 10.32 0.00 2.32
2524 3427 3.142162 TGACGGCTCGGCGGATTA 61.142 61.111 17.11 0.00 37.93 1.75
2560 3476 1.372582 TTAATTCCGCAGCAGCTCTG 58.627 50.000 0.00 8.34 45.62 3.35
2852 4190 2.525629 TCTGGGTGAGGCCGTTGA 60.526 61.111 0.00 0.00 38.44 3.18
2898 4236 0.684153 AATCAATCAACCAGCCCCCG 60.684 55.000 0.00 0.00 0.00 5.73
2899 4237 0.826062 CAATCAATCAACCAGCCCCC 59.174 55.000 0.00 0.00 0.00 5.40
2900 4238 1.851304 TCAATCAATCAACCAGCCCC 58.149 50.000 0.00 0.00 0.00 5.80
2906 4687 7.230913 AGGAGATGATCAATCAATCAATCAACC 59.769 37.037 0.00 0.00 40.69 3.77
2934 4715 2.742372 GCACGATGTTGCCGGAGT 60.742 61.111 5.05 0.00 36.42 3.85
2980 4775 6.463049 CCACCGTTCCAACTATCTATCTTGAT 60.463 42.308 0.00 0.00 0.00 2.57
3025 4833 2.046604 GCCACTCCGGTTGGGTAC 60.047 66.667 21.70 6.21 36.97 3.34
3026 4834 3.324108 GGCCACTCCGGTTGGGTA 61.324 66.667 21.70 0.00 36.97 3.69
3102 4910 4.691216 GGTACACTTGTGGAGAGAAATGTC 59.309 45.833 5.72 0.00 0.00 3.06
3108 4916 2.367567 GGTTGGTACACTTGTGGAGAGA 59.632 50.000 5.72 0.00 39.29 3.10
3245 5087 2.821969 GGTCAGTGACAATGAAATGGCT 59.178 45.455 24.20 0.00 33.68 4.75
3269 5111 1.941975 TGTTGTAGTCGTGACGAGTCA 59.058 47.619 19.55 13.64 40.22 3.41
3270 5112 2.675767 TGTTGTAGTCGTGACGAGTC 57.324 50.000 19.55 11.29 40.22 3.36
3271 5113 2.551032 TGATGTTGTAGTCGTGACGAGT 59.449 45.455 19.86 19.86 42.43 4.18
3277 5208 3.849911 AGGATGTGATGTTGTAGTCGTG 58.150 45.455 0.00 0.00 0.00 4.35
3279 5210 5.037385 CAGTAGGATGTGATGTTGTAGTCG 58.963 45.833 0.00 0.00 0.00 4.18
3280 5211 6.208988 TCAGTAGGATGTGATGTTGTAGTC 57.791 41.667 0.00 0.00 0.00 2.59
3281 5212 6.798427 ATCAGTAGGATGTGATGTTGTAGT 57.202 37.500 0.00 0.00 34.06 2.73
3282 5213 9.770097 AAATATCAGTAGGATGTGATGTTGTAG 57.230 33.333 0.00 0.00 35.44 2.74
3309 5240 7.094805 GGCAGTTGTCAATACTTGTCATCTTTA 60.095 37.037 0.00 0.00 30.19 1.85
3314 5245 4.397420 TGGCAGTTGTCAATACTTGTCAT 58.603 39.130 0.00 0.00 0.00 3.06
3315 5246 3.814625 TGGCAGTTGTCAATACTTGTCA 58.185 40.909 0.00 0.00 0.00 3.58
3316 5247 3.815401 ACTGGCAGTTGTCAATACTTGTC 59.185 43.478 15.88 0.00 0.00 3.18
3317 5248 3.820557 ACTGGCAGTTGTCAATACTTGT 58.179 40.909 15.88 0.00 0.00 3.16
3318 5249 5.940192 TTACTGGCAGTTGTCAATACTTG 57.060 39.130 27.24 0.00 0.00 3.16
3319 5250 8.677300 CATTATTACTGGCAGTTGTCAATACTT 58.323 33.333 27.24 10.26 0.00 2.24
3321 5252 6.912591 GCATTATTACTGGCAGTTGTCAATAC 59.087 38.462 27.24 11.03 0.00 1.89
3322 5253 6.828273 AGCATTATTACTGGCAGTTGTCAATA 59.172 34.615 27.24 19.20 0.00 1.90
3323 5254 5.653769 AGCATTATTACTGGCAGTTGTCAAT 59.346 36.000 27.24 20.23 0.00 2.57
3325 5256 4.395854 CAGCATTATTACTGGCAGTTGTCA 59.604 41.667 27.24 4.28 0.00 3.58
3326 5257 4.396166 ACAGCATTATTACTGGCAGTTGTC 59.604 41.667 27.24 12.82 38.25 3.18
3328 5259 4.970662 ACAGCATTATTACTGGCAGTTG 57.029 40.909 27.24 18.10 38.25 3.16
3329 5260 5.943416 TGTAACAGCATTATTACTGGCAGTT 59.057 36.000 27.24 11.55 39.01 3.16
3332 5263 7.403312 AATTGTAACAGCATTATTACTGGCA 57.597 32.000 0.00 0.00 38.25 4.92
3334 5265 9.935682 CAGTAATTGTAACAGCATTATTACTGG 57.064 33.333 18.26 6.46 44.69 4.00
3337 5268 9.632969 CGTCAGTAATTGTAACAGCATTATTAC 57.367 33.333 0.00 0.00 32.85 1.89
3339 5270 8.175069 CACGTCAGTAATTGTAACAGCATTATT 58.825 33.333 0.00 0.00 0.00 1.40
3340 5271 7.201609 CCACGTCAGTAATTGTAACAGCATTAT 60.202 37.037 0.00 0.00 0.00 1.28
3341 5272 6.091577 CCACGTCAGTAATTGTAACAGCATTA 59.908 38.462 0.00 0.00 0.00 1.90
3342 5273 5.106712 CCACGTCAGTAATTGTAACAGCATT 60.107 40.000 0.00 0.00 0.00 3.56
3343 5274 4.391830 CCACGTCAGTAATTGTAACAGCAT 59.608 41.667 0.00 0.00 0.00 3.79
3345 5276 3.991773 TCCACGTCAGTAATTGTAACAGC 59.008 43.478 0.00 0.00 0.00 4.40
3346 5277 6.533819 TTTCCACGTCAGTAATTGTAACAG 57.466 37.500 0.00 0.00 0.00 3.16
3347 5278 6.922247 TTTTCCACGTCAGTAATTGTAACA 57.078 33.333 0.00 0.00 0.00 2.41
3581 6176 0.103208 GCTGCAGCGTCTGGTAGTAT 59.897 55.000 25.23 0.00 31.21 2.12
3669 6264 2.047655 CTGGTTGGCGGCGAAGTA 60.048 61.111 12.98 0.00 0.00 2.24
3779 6374 2.884639 ACATTAGTTGACCTTGGTGCAC 59.115 45.455 8.80 8.80 0.00 4.57
3806 6404 0.469144 AGCTACTCCTCCAGCTAGGC 60.469 60.000 0.00 0.00 46.14 3.93
3807 6405 1.327303 CAGCTACTCCTCCAGCTAGG 58.673 60.000 0.00 0.00 46.26 3.02
3811 6409 1.694133 ATGGCAGCTACTCCTCCAGC 61.694 60.000 0.00 0.00 38.09 4.85
3812 6410 0.106335 CATGGCAGCTACTCCTCCAG 59.894 60.000 0.00 0.00 0.00 3.86
3813 6411 1.340399 CCATGGCAGCTACTCCTCCA 61.340 60.000 0.00 0.00 0.00 3.86
3814 6412 1.341156 ACCATGGCAGCTACTCCTCC 61.341 60.000 13.04 0.00 0.00 4.30
3815 6413 1.342819 CTACCATGGCAGCTACTCCTC 59.657 57.143 13.04 0.00 0.00 3.71
3816 6414 1.418334 CTACCATGGCAGCTACTCCT 58.582 55.000 13.04 0.00 0.00 3.69
3817 6415 0.250081 GCTACCATGGCAGCTACTCC 60.250 60.000 27.02 0.00 34.86 3.85
3818 6416 0.465705 TGCTACCATGGCAGCTACTC 59.534 55.000 32.16 8.78 38.63 2.59
3819 6417 1.071385 GATGCTACCATGGCAGCTACT 59.929 52.381 32.16 19.38 43.15 2.57
3820 6418 1.202687 TGATGCTACCATGGCAGCTAC 60.203 52.381 32.16 25.24 44.96 3.58
3829 6431 3.819564 ATGTACGTGTGATGCTACCAT 57.180 42.857 0.00 0.00 0.00 3.55
3886 6493 3.951775 AGAGGAGAGACACATGACAAC 57.048 47.619 0.00 0.00 0.00 3.32
3922 6540 1.153168 GTGTGAGCATATGGGGCGT 60.153 57.895 4.56 0.00 36.08 5.68
3957 6575 0.178975 TTGGGCTGGAACAAATCGGT 60.179 50.000 0.00 0.00 38.70 4.69
4002 6620 8.675705 TCCCACGGCATTTATATGATTATATG 57.324 34.615 0.35 0.00 33.37 1.78
4004 6622 9.996554 CTATCCCACGGCATTTATATGATTATA 57.003 33.333 0.00 0.00 33.37 0.98
4005 6623 7.939039 CCTATCCCACGGCATTTATATGATTAT 59.061 37.037 0.00 0.00 33.37 1.28
4006 6624 7.126573 TCCTATCCCACGGCATTTATATGATTA 59.873 37.037 0.00 0.00 33.37 1.75
4007 6625 6.069673 TCCTATCCCACGGCATTTATATGATT 60.070 38.462 0.00 0.00 33.37 2.57
4008 6626 5.428457 TCCTATCCCACGGCATTTATATGAT 59.572 40.000 0.00 0.00 33.37 2.45
4009 6627 4.780554 TCCTATCCCACGGCATTTATATGA 59.219 41.667 0.00 0.00 33.37 2.15
4046 6668 4.142469 GGACCCACTGTAACATTTACATGC 60.142 45.833 0.00 0.00 33.05 4.06
4062 6684 4.142038 ACTTGTTGATTAACTGGACCCAC 58.858 43.478 1.75 0.00 37.68 4.61
4064 6686 7.444487 GGATATACTTGTTGATTAACTGGACCC 59.556 40.741 1.75 0.00 37.68 4.46
4129 6754 3.332034 ACAAGTAATTCCGAACGAAGGG 58.668 45.455 0.00 0.00 32.78 3.95
4130 6755 3.060363 CGACAAGTAATTCCGAACGAAGG 59.940 47.826 0.00 0.00 32.78 3.46
4131 6756 3.671928 ACGACAAGTAATTCCGAACGAAG 59.328 43.478 0.00 0.00 32.78 3.79
4132 6757 3.426191 CACGACAAGTAATTCCGAACGAA 59.574 43.478 0.00 0.00 34.14 3.85
4133 6758 2.981805 CACGACAAGTAATTCCGAACGA 59.018 45.455 0.00 0.00 0.00 3.85
4134 6759 2.981805 TCACGACAAGTAATTCCGAACG 59.018 45.455 0.00 0.00 0.00 3.95
4137 6762 5.106869 CCATTTTCACGACAAGTAATTCCGA 60.107 40.000 0.00 0.00 0.00 4.55
4138 6763 5.086058 CCATTTTCACGACAAGTAATTCCG 58.914 41.667 0.00 0.00 0.00 4.30
4139 6764 6.249035 TCCATTTTCACGACAAGTAATTCC 57.751 37.500 0.00 0.00 0.00 3.01
4140 6765 7.305474 ACATCCATTTTCACGACAAGTAATTC 58.695 34.615 0.00 0.00 0.00 2.17
4141 6766 7.214467 ACATCCATTTTCACGACAAGTAATT 57.786 32.000 0.00 0.00 0.00 1.40
4142 6767 6.817765 ACATCCATTTTCACGACAAGTAAT 57.182 33.333 0.00 0.00 0.00 1.89
4143 6768 7.822334 AGATACATCCATTTTCACGACAAGTAA 59.178 33.333 0.00 0.00 0.00 2.24
4144 6769 7.327975 AGATACATCCATTTTCACGACAAGTA 58.672 34.615 0.00 0.00 0.00 2.24
4145 6770 6.173339 AGATACATCCATTTTCACGACAAGT 58.827 36.000 0.00 0.00 0.00 3.16
4146 6771 6.668541 AGATACATCCATTTTCACGACAAG 57.331 37.500 0.00 0.00 0.00 3.16
4147 6772 8.447833 GTTTAGATACATCCATTTTCACGACAA 58.552 33.333 0.00 0.00 0.00 3.18
4148 6773 7.201487 CGTTTAGATACATCCATTTTCACGACA 60.201 37.037 0.00 0.00 0.00 4.35
4149 6774 7.117454 CGTTTAGATACATCCATTTTCACGAC 58.883 38.462 0.00 0.00 0.00 4.34
4150 6775 6.814644 ACGTTTAGATACATCCATTTTCACGA 59.185 34.615 0.00 0.00 0.00 4.35
4151 6776 7.000575 ACGTTTAGATACATCCATTTTCACG 57.999 36.000 0.00 0.00 0.00 4.35
4192 6817 9.037737 CGGAATTACTTGTCTCGGAAATAAATA 57.962 33.333 0.00 0.00 0.00 1.40
4193 6818 7.767198 TCGGAATTACTTGTCTCGGAAATAAAT 59.233 33.333 0.00 0.00 0.00 1.40
4194 6819 7.098477 TCGGAATTACTTGTCTCGGAAATAAA 58.902 34.615 0.00 0.00 0.00 1.40
4195 6820 6.632909 TCGGAATTACTTGTCTCGGAAATAA 58.367 36.000 0.00 0.00 0.00 1.40
4196 6821 6.211587 TCGGAATTACTTGTCTCGGAAATA 57.788 37.500 0.00 0.00 0.00 1.40
4197 6822 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
4198 6823 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
4199 6824 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
4200 6825 3.367703 GGTTCGGAATTACTTGTCTCGGA 60.368 47.826 0.00 0.00 0.00 4.55
4201 6826 2.928116 GGTTCGGAATTACTTGTCTCGG 59.072 50.000 0.00 0.00 0.00 4.63
4202 6827 2.597305 CGGTTCGGAATTACTTGTCTCG 59.403 50.000 0.00 0.00 0.00 4.04
4203 6828 3.841643 TCGGTTCGGAATTACTTGTCTC 58.158 45.455 0.00 0.00 0.00 3.36
4204 6829 3.368116 CCTCGGTTCGGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
4205 6830 2.928116 CCTCGGTTCGGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
4206 6831 2.564062 TCCTCGGTTCGGAATTACTTGT 59.436 45.455 0.00 0.00 0.00 3.16
4207 6832 3.241067 TCCTCGGTTCGGAATTACTTG 57.759 47.619 0.00 0.00 0.00 3.16
4208 6833 3.260128 ACTTCCTCGGTTCGGAATTACTT 59.740 43.478 0.00 0.00 39.64 2.24
4209 6834 2.830321 ACTTCCTCGGTTCGGAATTACT 59.170 45.455 0.00 0.00 39.64 2.24
4210 6835 3.242549 ACTTCCTCGGTTCGGAATTAC 57.757 47.619 0.00 0.00 39.64 1.89
4211 6836 3.763360 TGTACTTCCTCGGTTCGGAATTA 59.237 43.478 0.00 0.00 39.64 1.40
4212 6837 2.564062 TGTACTTCCTCGGTTCGGAATT 59.436 45.455 0.00 0.00 39.64 2.17
4213 6838 2.173519 TGTACTTCCTCGGTTCGGAAT 58.826 47.619 0.00 0.00 39.64 3.01
4214 6839 1.619654 TGTACTTCCTCGGTTCGGAA 58.380 50.000 0.00 0.00 38.18 4.30
4215 6840 1.475280 CATGTACTTCCTCGGTTCGGA 59.525 52.381 0.00 0.00 0.00 4.55
4216 6841 1.203994 ACATGTACTTCCTCGGTTCGG 59.796 52.381 0.00 0.00 0.00 4.30
4217 6842 2.649331 ACATGTACTTCCTCGGTTCG 57.351 50.000 0.00 0.00 0.00 3.95
4218 6843 7.486647 TCTATTAACATGTACTTCCTCGGTTC 58.513 38.462 0.00 0.00 0.00 3.62
4219 6844 7.123847 ACTCTATTAACATGTACTTCCTCGGTT 59.876 37.037 0.00 0.00 0.00 4.44
4220 6845 6.606395 ACTCTATTAACATGTACTTCCTCGGT 59.394 38.462 0.00 0.00 0.00 4.69
4221 6846 6.918569 CACTCTATTAACATGTACTTCCTCGG 59.081 42.308 0.00 0.00 0.00 4.63
4222 6847 6.918569 CCACTCTATTAACATGTACTTCCTCG 59.081 42.308 0.00 0.00 0.00 4.63
4223 6848 8.008513 TCCACTCTATTAACATGTACTTCCTC 57.991 38.462 0.00 0.00 0.00 3.71
4224 6849 7.620094 ACTCCACTCTATTAACATGTACTTCCT 59.380 37.037 0.00 0.00 0.00 3.36
4225 6850 7.783042 ACTCCACTCTATTAACATGTACTTCC 58.217 38.462 0.00 0.00 0.00 3.46
4226 6851 9.654663 AAACTCCACTCTATTAACATGTACTTC 57.345 33.333 0.00 0.00 0.00 3.01
4227 6852 9.436957 CAAACTCCACTCTATTAACATGTACTT 57.563 33.333 0.00 0.00 0.00 2.24
4228 6853 8.812972 TCAAACTCCACTCTATTAACATGTACT 58.187 33.333 0.00 0.00 0.00 2.73
4229 6854 8.997621 TCAAACTCCACTCTATTAACATGTAC 57.002 34.615 0.00 0.00 0.00 2.90
4231 6856 8.950210 CATTCAAACTCCACTCTATTAACATGT 58.050 33.333 0.00 0.00 0.00 3.21
4242 6867 4.555511 GCACAGAACATTCAAACTCCACTC 60.556 45.833 0.00 0.00 0.00 3.51
4249 6874 2.791004 GCAGTGCACAGAACATTCAAAC 59.209 45.455 21.04 0.00 0.00 2.93
4250 6875 2.426381 TGCAGTGCACAGAACATTCAAA 59.574 40.909 21.04 0.00 31.71 2.69
4353 6990 0.819259 TGTTCACAGCTCACCTTGGC 60.819 55.000 0.00 0.00 0.00 4.52
4384 7021 8.461222 GGATGTTTGACTGAAAATATCACATGA 58.539 33.333 0.00 0.00 38.63 3.07
4412 7049 5.351740 GTGTATTGAGGTTTACTTGGAGCTC 59.648 44.000 4.71 4.71 40.02 4.09
4422 7059 4.351407 TGTTCCTGGGTGTATTGAGGTTTA 59.649 41.667 0.00 0.00 0.00 2.01
4424 7061 2.714250 TGTTCCTGGGTGTATTGAGGTT 59.286 45.455 0.00 0.00 0.00 3.50
4425 7062 2.344592 TGTTCCTGGGTGTATTGAGGT 58.655 47.619 0.00 0.00 0.00 3.85
4436 7076 2.086869 CAGCATACTGTTGTTCCTGGG 58.913 52.381 0.00 0.00 39.22 4.45
4454 7094 3.750371 TGTTCTTGGGTGTATTGGACAG 58.250 45.455 0.00 0.00 39.29 3.51
4455 7095 3.497763 CCTGTTCTTGGGTGTATTGGACA 60.498 47.826 0.00 0.00 34.94 4.02
4456 7096 3.081804 CCTGTTCTTGGGTGTATTGGAC 58.918 50.000 0.00 0.00 0.00 4.02
4457 7097 2.983192 TCCTGTTCTTGGGTGTATTGGA 59.017 45.455 0.00 0.00 0.00 3.53
4458 7098 3.244911 ACTCCTGTTCTTGGGTGTATTGG 60.245 47.826 0.00 0.00 0.00 3.16
4459 7099 3.753272 CACTCCTGTTCTTGGGTGTATTG 59.247 47.826 0.00 0.00 0.00 1.90
4460 7100 3.244911 CCACTCCTGTTCTTGGGTGTATT 60.245 47.826 0.00 0.00 0.00 1.89
4461 7101 2.305927 CCACTCCTGTTCTTGGGTGTAT 59.694 50.000 0.00 0.00 0.00 2.29
4462 7102 1.697432 CCACTCCTGTTCTTGGGTGTA 59.303 52.381 0.00 0.00 0.00 2.90
4463 7103 0.474184 CCACTCCTGTTCTTGGGTGT 59.526 55.000 0.00 0.00 0.00 4.16
4464 7104 0.890996 GCCACTCCTGTTCTTGGGTG 60.891 60.000 0.00 0.00 0.00 4.61
4465 7105 1.062488 AGCCACTCCTGTTCTTGGGT 61.062 55.000 0.00 0.00 34.99 4.51
4466 7106 0.607489 CAGCCACTCCTGTTCTTGGG 60.607 60.000 0.00 0.00 0.00 4.12
4467 7107 1.239968 GCAGCCACTCCTGTTCTTGG 61.240 60.000 0.00 0.00 35.28 3.61
4468 7108 0.535780 TGCAGCCACTCCTGTTCTTG 60.536 55.000 0.00 0.00 35.28 3.02
4469 7109 0.403271 ATGCAGCCACTCCTGTTCTT 59.597 50.000 0.00 0.00 35.28 2.52
4470 7110 0.322277 CATGCAGCCACTCCTGTTCT 60.322 55.000 0.00 0.00 35.28 3.01
4471 7111 1.930908 GCATGCAGCCACTCCTGTTC 61.931 60.000 14.21 0.00 37.23 3.18
4472 7112 1.975407 GCATGCAGCCACTCCTGTT 60.975 57.895 14.21 0.00 37.23 3.16
4473 7113 2.360852 GCATGCAGCCACTCCTGT 60.361 61.111 14.21 0.00 37.23 4.00
4474 7114 1.725557 GATGCATGCAGCCACTCCTG 61.726 60.000 25.21 0.00 44.83 3.86
4475 7115 1.453379 GATGCATGCAGCCACTCCT 60.453 57.895 25.21 5.12 44.83 3.69
4476 7116 2.831366 CGATGCATGCAGCCACTCC 61.831 63.158 28.76 9.21 44.83 3.85
4477 7117 2.713770 CGATGCATGCAGCCACTC 59.286 61.111 28.76 18.01 44.83 3.51
4478 7118 3.515286 GCGATGCATGCAGCCACT 61.515 61.111 28.76 10.64 44.83 4.00
4482 7122 4.266070 CTGGGCGATGCATGCAGC 62.266 66.667 25.69 25.69 45.96 5.25
4483 7123 1.897137 ATCTGGGCGATGCATGCAG 60.897 57.895 26.69 14.50 0.00 4.41
4484 7124 2.190841 CATCTGGGCGATGCATGCA 61.191 57.895 25.04 25.04 42.75 3.96
4485 7125 2.643272 CATCTGGGCGATGCATGC 59.357 61.111 11.82 11.82 42.75 4.06
4491 7131 1.600076 GCATCTGCATCTGGGCGAT 60.600 57.895 0.00 0.00 41.59 4.58
4492 7132 2.203112 GCATCTGCATCTGGGCGA 60.203 61.111 0.00 0.00 41.59 5.54
4493 7133 3.285215 GGCATCTGCATCTGGGCG 61.285 66.667 4.33 0.00 44.36 6.13
4494 7134 3.285215 CGGCATCTGCATCTGGGC 61.285 66.667 4.33 0.00 44.36 5.36
4495 7135 2.593725 CCGGCATCTGCATCTGGG 60.594 66.667 4.33 0.00 44.36 4.45
4496 7136 2.593725 CCCGGCATCTGCATCTGG 60.594 66.667 0.00 0.37 44.36 3.86
4497 7137 2.593725 CCCCGGCATCTGCATCTG 60.594 66.667 0.00 0.00 44.36 2.90
4498 7138 3.882326 CCCCCGGCATCTGCATCT 61.882 66.667 0.00 0.00 44.36 2.90
4499 7139 4.195334 ACCCCCGGCATCTGCATC 62.195 66.667 0.00 0.00 44.36 3.91
4500 7140 4.195334 GACCCCCGGCATCTGCAT 62.195 66.667 0.00 0.00 44.36 3.96
4503 7143 3.866582 GAGGACCCCCGGCATCTG 61.867 72.222 0.00 0.00 37.58 2.90
4509 7149 3.945064 AAAGGAGGAGGACCCCCGG 62.945 68.421 0.00 0.00 37.58 5.73
4510 7150 2.285442 AAAGGAGGAGGACCCCCG 60.285 66.667 0.00 0.00 37.58 5.73
4511 7151 2.001838 GGAAAGGAGGAGGACCCCC 61.002 68.421 0.00 0.00 36.73 5.40
4512 7152 0.342313 TAGGAAAGGAGGAGGACCCC 59.658 60.000 0.00 0.00 36.73 4.95
4513 7153 2.265526 TTAGGAAAGGAGGAGGACCC 57.734 55.000 0.00 0.00 36.73 4.46
4514 7154 4.652679 TTTTTAGGAAAGGAGGAGGACC 57.347 45.455 0.00 0.00 0.00 4.46
4537 7177 2.634453 CCATTTCCTGCTCCTGGTTTTT 59.366 45.455 0.00 0.00 0.00 1.94
4538 7178 2.250924 CCATTTCCTGCTCCTGGTTTT 58.749 47.619 0.00 0.00 0.00 2.43
4539 7179 1.147817 ACCATTTCCTGCTCCTGGTTT 59.852 47.619 0.00 0.00 36.86 3.27
4540 7180 0.779997 ACCATTTCCTGCTCCTGGTT 59.220 50.000 0.00 0.00 36.86 3.67
4541 7181 1.561542 CTACCATTTCCTGCTCCTGGT 59.438 52.381 0.00 0.00 42.62 4.00
4542 7182 1.133976 CCTACCATTTCCTGCTCCTGG 60.134 57.143 0.00 0.00 0.00 4.45
4543 7183 1.133976 CCCTACCATTTCCTGCTCCTG 60.134 57.143 0.00 0.00 0.00 3.86
4544 7184 1.216990 CCCTACCATTTCCTGCTCCT 58.783 55.000 0.00 0.00 0.00 3.69
4545 7185 1.213296 TCCCTACCATTTCCTGCTCC 58.787 55.000 0.00 0.00 0.00 4.70
4546 7186 2.026262 TGTTCCCTACCATTTCCTGCTC 60.026 50.000 0.00 0.00 0.00 4.26
4547 7187 1.992557 TGTTCCCTACCATTTCCTGCT 59.007 47.619 0.00 0.00 0.00 4.24
4548 7188 2.492088 GTTGTTCCCTACCATTTCCTGC 59.508 50.000 0.00 0.00 0.00 4.85
4549 7189 3.758554 CTGTTGTTCCCTACCATTTCCTG 59.241 47.826 0.00 0.00 0.00 3.86
4550 7190 3.397955 ACTGTTGTTCCCTACCATTTCCT 59.602 43.478 0.00 0.00 0.00 3.36
4593 7233 4.522114 TGTGTGTTGAGAAACCTTGATCA 58.478 39.130 0.00 0.00 0.00 2.92
4634 7274 0.817654 TATGGAGGCTGACACGACAG 59.182 55.000 0.00 0.00 40.43 3.51
4636 7276 1.539065 CCATATGGAGGCTGACACGAC 60.539 57.143 17.49 0.00 37.39 4.34
4637 7277 0.752658 CCATATGGAGGCTGACACGA 59.247 55.000 17.49 0.00 37.39 4.35
4638 7278 0.752658 TCCATATGGAGGCTGACACG 59.247 55.000 20.98 0.00 39.78 4.49
4663 7307 1.092348 GTGGTTTGGCTCGGTAATCC 58.908 55.000 0.00 0.00 0.00 3.01
4671 7315 2.888834 ATGTGTTTGTGGTTTGGCTC 57.111 45.000 0.00 0.00 0.00 4.70
4682 7326 7.637229 CAGCTCTTATGGAGATTATGTGTTTG 58.363 38.462 0.00 0.00 44.45 2.93
4716 7360 0.742505 CTGCCGAGTGGGTTATACGA 59.257 55.000 0.00 0.00 38.44 3.43
4730 7374 0.534412 AAGAGGATGTCTCACTGCCG 59.466 55.000 0.00 0.00 44.81 5.69
4732 7376 3.438434 GGAAAAAGAGGATGTCTCACTGC 59.562 47.826 0.00 0.00 44.81 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.