Multiple sequence alignment - TraesCS7B01G327700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G327700 chr7B 100.000 3097 0 0 1 3097 581895424 581892328 0.000000e+00 5720
1 TraesCS7B01G327700 chr7B 80.230 521 69 23 1058 1570 580885611 580885117 8.160000e-96 361
2 TraesCS7B01G327700 chr7B 93.119 218 15 0 2880 3097 573921968 573921751 1.390000e-83 320
3 TraesCS7B01G327700 chr7B 92.202 218 17 0 2880 3097 43884896 43885113 3.000000e-80 309
4 TraesCS7B01G327700 chr7B 91.089 202 18 0 1368 1569 580969955 580969754 1.090000e-69 274
5 TraesCS7B01G327700 chr7B 91.457 199 17 0 1368 1566 581333786 581333984 1.090000e-69 274
6 TraesCS7B01G327700 chr7B 78.169 426 63 23 1675 2085 581334090 581334500 8.580000e-61 244
7 TraesCS7B01G327700 chr7B 76.690 429 73 23 1675 2085 580969663 580969244 2.420000e-51 213
8 TraesCS7B01G327700 chr7D 91.922 1795 85 32 934 2702 539134631 539132871 0.000000e+00 2457
9 TraesCS7B01G327700 chr7D 84.156 972 69 35 1 920 539135641 539134703 0.000000e+00 863
10 TraesCS7B01G327700 chr7D 77.992 518 84 26 1053 1559 538818777 538818279 6.490000e-77 298
11 TraesCS7B01G327700 chr7D 91.457 199 17 0 1368 1566 538140479 538140281 1.090000e-69 274
12 TraesCS7B01G327700 chr7D 90.594 202 19 0 1368 1569 538595141 538595342 5.090000e-68 268
13 TraesCS7B01G327700 chr7D 78.689 427 59 27 1675 2085 538603311 538603721 3.960000e-64 255
14 TraesCS7B01G327700 chr7D 78.404 426 62 22 1675 2085 538140184 538139774 1.840000e-62 250
15 TraesCS7B01G327700 chr7D 78.454 427 60 25 1675 2085 538595415 538595825 1.840000e-62 250
16 TraesCS7B01G327700 chr7D 77.672 421 74 19 1675 2085 538662733 538663143 3.990000e-59 239
17 TraesCS7B01G327700 chr7D 77.726 431 65 27 1675 2085 538332640 538332221 5.160000e-58 235
18 TraesCS7B01G327700 chr7D 82.553 235 32 9 1034 1265 538662112 538662340 6.770000e-47 198
19 TraesCS7B01G327700 chr7A 89.586 1834 92 44 916 2702 620750529 620748748 0.000000e+00 2237
20 TraesCS7B01G327700 chr7A 83.247 579 31 21 371 920 620751113 620750572 3.620000e-129 472
21 TraesCS7B01G327700 chr7A 79.846 521 77 22 1058 1569 619576607 619576106 3.800000e-94 355
22 TraesCS7B01G327700 chr7A 78.464 534 87 27 1053 1566 620371185 620370660 1.070000e-84 324
23 TraesCS7B01G327700 chr7A 90.826 218 20 0 2880 3097 692931322 692931539 3.020000e-75 292
24 TraesCS7B01G327700 chr7A 91.133 203 18 0 1368 1570 619166620 619166418 3.040000e-70 276
25 TraesCS7B01G327700 chr7A 77.857 420 75 15 1675 2085 619166335 619165925 8.580000e-61 244
26 TraesCS7B01G327700 chr7A 77.995 409 72 16 1686 2085 619576020 619575621 1.110000e-59 241
27 TraesCS7B01G327700 chr7A 77.594 424 69 21 1675 2085 620172245 620172655 1.860000e-57 233
28 TraesCS7B01G327700 chr7A 78.723 376 21 18 1 362 620751488 620751158 2.440000e-46 196
29 TraesCS7B01G327700 chr7A 83.333 210 30 5 1058 1264 620171639 620171846 4.080000e-44 189
30 TraesCS7B01G327700 chr7A 82.629 213 32 5 1058 1267 619633979 619633769 1.900000e-42 183
31 TraesCS7B01G327700 chr7A 82.857 210 31 5 1058 1264 619907219 619907426 1.900000e-42 183
32 TraesCS7B01G327700 chr7A 82.243 214 35 3 1053 1264 620487135 620487347 6.820000e-42 182
33 TraesCS7B01G327700 chr3A 92.105 228 16 2 2872 3097 162384204 162384431 1.390000e-83 320
34 TraesCS7B01G327700 chr3B 87.719 228 21 5 2873 3097 154351652 154351875 3.060000e-65 259
35 TraesCS7B01G327700 chr5D 87.963 216 24 2 2877 3091 57071241 57071455 1.430000e-63 254
36 TraesCS7B01G327700 chr5D 86.574 216 27 2 2877 3091 91869757 91869971 1.440000e-58 237
37 TraesCS7B01G327700 chr3D 87.963 216 24 2 2877 3091 95571933 95571719 1.430000e-63 254
38 TraesCS7B01G327700 chr2D 86.916 214 26 2 2880 3091 646962693 646962906 3.990000e-59 239


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G327700 chr7B 581892328 581895424 3096 True 5720.000000 5720 100.0000 1 3097 1 chr7B.!!$R3 3096
1 TraesCS7B01G327700 chr7B 581333786 581334500 714 False 259.000000 274 84.8130 1368 2085 2 chr7B.!!$F2 717
2 TraesCS7B01G327700 chr7B 580969244 580969955 711 True 243.500000 274 83.8895 1368 2085 2 chr7B.!!$R4 717
3 TraesCS7B01G327700 chr7D 539132871 539135641 2770 True 1660.000000 2457 88.0390 1 2702 2 chr7D.!!$R4 2701
4 TraesCS7B01G327700 chr7D 538139774 538140479 705 True 262.000000 274 84.9305 1368 2085 2 chr7D.!!$R3 717
5 TraesCS7B01G327700 chr7D 538595141 538595825 684 False 259.000000 268 84.5240 1368 2085 2 chr7D.!!$F2 717
6 TraesCS7B01G327700 chr7D 538662112 538663143 1031 False 218.500000 239 80.1125 1034 2085 2 chr7D.!!$F3 1051
7 TraesCS7B01G327700 chr7A 620748748 620751488 2740 True 968.333333 2237 83.8520 1 2702 3 chr7A.!!$R5 2701
8 TraesCS7B01G327700 chr7A 620370660 620371185 525 True 324.000000 324 78.4640 1053 1566 1 chr7A.!!$R2 513
9 TraesCS7B01G327700 chr7A 619575621 619576607 986 True 298.000000 355 78.9205 1058 2085 2 chr7A.!!$R4 1027
10 TraesCS7B01G327700 chr7A 619165925 619166620 695 True 260.000000 276 84.4950 1368 2085 2 chr7A.!!$R3 717
11 TraesCS7B01G327700 chr7A 620171639 620172655 1016 False 211.000000 233 80.4635 1058 2085 2 chr7A.!!$F4 1027

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
251 278 0.319211 GCTGCACGTACACCACACTA 60.319 55.0 0.0 0.0 0.0 2.74 F
1297 1516 0.318120 TGCATTCTCAGACAGTCGCA 59.682 50.0 0.0 0.0 0.0 5.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1358 1599 0.582005 GACGACAGCTGAAACACACC 59.418 55.0 23.35 0.0 0.0 4.16 R
2407 2749 0.036294 GGCCGCCTTCTTCTTGTAGT 60.036 55.0 0.71 0.0 0.0 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.751166 GCACTGGCGGATCATATACT 57.249 50.000 0.00 0.00 0.00 2.12
25 26 2.341257 GCACTGGCGGATCATATACTG 58.659 52.381 0.00 0.00 0.00 2.74
26 27 2.289072 GCACTGGCGGATCATATACTGT 60.289 50.000 0.00 0.00 0.00 3.55
27 28 3.056821 GCACTGGCGGATCATATACTGTA 60.057 47.826 0.00 0.00 0.00 2.74
28 29 4.486090 CACTGGCGGATCATATACTGTAC 58.514 47.826 0.00 0.00 0.00 2.90
29 30 4.218635 CACTGGCGGATCATATACTGTACT 59.781 45.833 0.00 0.00 0.00 2.73
136 141 3.867857 ACACAATGCACCGTATGTATGA 58.132 40.909 0.00 0.00 33.32 2.15
137 142 3.871006 ACACAATGCACCGTATGTATGAG 59.129 43.478 0.00 0.00 33.32 2.90
138 143 3.871006 CACAATGCACCGTATGTATGAGT 59.129 43.478 0.00 0.00 33.32 3.41
139 144 4.025730 CACAATGCACCGTATGTATGAGTC 60.026 45.833 0.00 0.00 33.32 3.36
140 145 2.485266 TGCACCGTATGTATGAGTCG 57.515 50.000 0.00 0.00 0.00 4.18
141 146 1.746787 TGCACCGTATGTATGAGTCGT 59.253 47.619 0.00 0.00 0.00 4.34
142 147 2.944349 TGCACCGTATGTATGAGTCGTA 59.056 45.455 0.00 0.00 0.00 3.43
143 148 3.566742 TGCACCGTATGTATGAGTCGTAT 59.433 43.478 0.00 0.00 0.00 3.06
144 149 3.912563 GCACCGTATGTATGAGTCGTATG 59.087 47.826 0.00 0.00 0.00 2.39
145 150 4.319984 GCACCGTATGTATGAGTCGTATGA 60.320 45.833 0.00 0.00 0.00 2.15
177 182 1.586422 CACTCACCACTCAACCACAG 58.414 55.000 0.00 0.00 0.00 3.66
196 223 5.512921 CCACAGGTAAAAATTCAGCCCAATT 60.513 40.000 0.00 0.00 0.00 2.32
218 245 1.196766 ATGAGACCTCACCAGCTGCA 61.197 55.000 8.66 0.00 43.11 4.41
219 246 1.196766 TGAGACCTCACCAGCTGCAT 61.197 55.000 8.66 0.00 34.14 3.96
220 247 0.461693 GAGACCTCACCAGCTGCATC 60.462 60.000 8.66 0.00 0.00 3.91
221 248 1.812922 GACCTCACCAGCTGCATCG 60.813 63.158 8.66 0.00 0.00 3.84
222 249 2.513204 CCTCACCAGCTGCATCGG 60.513 66.667 8.66 1.90 0.00 4.18
223 250 3.200593 CTCACCAGCTGCATCGGC 61.201 66.667 8.66 0.00 41.68 5.54
224 251 4.783621 TCACCAGCTGCATCGGCC 62.784 66.667 8.66 0.00 40.13 6.13
226 253 4.349503 ACCAGCTGCATCGGCCAA 62.350 61.111 8.66 0.00 40.13 4.52
227 254 3.818787 CCAGCTGCATCGGCCAAC 61.819 66.667 8.66 0.00 40.13 3.77
228 255 3.818787 CAGCTGCATCGGCCAACC 61.819 66.667 2.24 0.00 40.13 3.77
251 278 0.319211 GCTGCACGTACACCACACTA 60.319 55.000 0.00 0.00 0.00 2.74
284 311 1.971695 CACCGGAAACCTTGCCCTC 60.972 63.158 9.46 0.00 0.00 4.30
287 314 1.078426 CGGAAACCTTGCCCTCGAT 60.078 57.895 0.00 0.00 0.00 3.59
355 395 2.361230 CCTTCGGCAAGGGGGAAC 60.361 66.667 7.57 0.00 45.27 3.62
397 473 1.522092 GGATCAGATCACGCACCCA 59.478 57.895 12.66 0.00 0.00 4.51
402 488 2.821366 GATCACGCACCCAGCAGG 60.821 66.667 0.00 0.00 46.13 4.85
552 638 3.873812 GCCCATCTACCCGGGTGG 61.874 72.222 36.97 33.52 45.07 4.61
553 639 3.873812 CCCATCTACCCGGGTGGC 61.874 72.222 36.97 0.00 37.70 5.01
768 899 0.741574 CGGCACCACGGCATTTACTA 60.742 55.000 0.00 0.00 41.26 1.82
770 901 0.372334 GCACCACGGCATTTACTACG 59.628 55.000 0.00 0.00 0.00 3.51
771 902 0.372334 CACCACGGCATTTACTACGC 59.628 55.000 0.00 0.00 0.00 4.42
881 1018 4.626402 CCCTCCCCCGGCCGTATA 62.626 72.222 26.12 5.42 0.00 1.47
882 1019 2.524887 CCTCCCCCGGCCGTATAA 60.525 66.667 26.12 5.85 0.00 0.98
883 1020 2.739132 CTCCCCCGGCCGTATAAC 59.261 66.667 26.12 0.00 0.00 1.89
884 1021 3.216944 CTCCCCCGGCCGTATAACG 62.217 68.421 26.12 7.18 42.11 3.18
912 1050 3.470888 CACCCCCTACTGCCCGAG 61.471 72.222 0.00 0.00 0.00 4.63
928 1126 1.452833 GAGCAATCCACCCAGCTCC 60.453 63.158 0.00 0.00 45.79 4.70
931 1129 4.115199 AATCCACCCAGCTCCGCC 62.115 66.667 0.00 0.00 0.00 6.13
966 1164 1.688735 ACACTTCACTCAGTAGCAGCA 59.311 47.619 0.00 0.00 0.00 4.41
967 1165 2.288702 ACACTTCACTCAGTAGCAGCAG 60.289 50.000 0.00 0.00 0.00 4.24
968 1166 1.337635 ACTTCACTCAGTAGCAGCAGC 60.338 52.381 0.00 0.00 42.56 5.25
971 1169 1.915266 ACTCAGTAGCAGCAGCCCA 60.915 57.895 0.00 0.00 43.56 5.36
987 1185 3.748568 CAGCCCAGTAGTGAGAAAGAAAC 59.251 47.826 0.00 0.00 0.00 2.78
1289 1508 5.658468 CATCTTCAGTAGTGCATTCTCAGA 58.342 41.667 0.00 0.00 0.00 3.27
1291 1510 4.524328 TCTTCAGTAGTGCATTCTCAGACA 59.476 41.667 0.00 0.00 0.00 3.41
1297 1516 0.318120 TGCATTCTCAGACAGTCGCA 59.682 50.000 0.00 0.00 0.00 5.10
1343 1566 2.408271 TGTGATGGAAGCTGATGGTC 57.592 50.000 0.00 0.00 0.00 4.02
1348 1580 2.479566 TGGAAGCTGATGGTCTGTTC 57.520 50.000 0.00 0.00 0.00 3.18
1349 1581 1.338105 TGGAAGCTGATGGTCTGTTCG 60.338 52.381 0.00 0.00 0.00 3.95
1356 1597 2.227968 GATGGTCTGTTCGTGTGCGC 62.228 60.000 0.00 0.00 38.14 6.09
1358 1599 4.059459 GTCTGTTCGTGTGCGCGG 62.059 66.667 8.83 0.00 38.14 6.46
1366 1612 3.883180 GTGTGCGCGGGTGTGTTT 61.883 61.111 8.83 0.00 0.00 2.83
1513 1759 3.691342 CGCCTCTGGTTCGACCCA 61.691 66.667 0.27 0.27 37.50 4.51
1574 1820 4.120244 ACGTCATGTGAGCCTCCT 57.880 55.556 0.00 0.00 0.00 3.69
1575 1821 2.366469 ACGTCATGTGAGCCTCCTT 58.634 52.632 0.00 0.00 0.00 3.36
1576 1822 0.247736 ACGTCATGTGAGCCTCCTTC 59.752 55.000 0.00 0.00 0.00 3.46
1577 1823 0.460987 CGTCATGTGAGCCTCCTTCC 60.461 60.000 0.00 0.00 0.00 3.46
1578 1824 0.908198 GTCATGTGAGCCTCCTTCCT 59.092 55.000 0.00 0.00 0.00 3.36
1579 1825 1.280421 GTCATGTGAGCCTCCTTCCTT 59.720 52.381 0.00 0.00 0.00 3.36
1580 1826 1.556911 TCATGTGAGCCTCCTTCCTTC 59.443 52.381 0.00 0.00 0.00 3.46
1581 1827 1.280133 CATGTGAGCCTCCTTCCTTCA 59.720 52.381 0.00 0.00 0.00 3.02
1582 1828 1.661463 TGTGAGCCTCCTTCCTTCAT 58.339 50.000 0.00 0.00 0.00 2.57
1583 1829 1.280133 TGTGAGCCTCCTTCCTTCATG 59.720 52.381 0.00 0.00 0.00 3.07
1584 1830 0.914644 TGAGCCTCCTTCCTTCATGG 59.085 55.000 0.00 0.00 37.10 3.66
1585 1831 1.207791 GAGCCTCCTTCCTTCATGGA 58.792 55.000 0.00 0.00 44.51 3.41
1586 1832 1.773653 GAGCCTCCTTCCTTCATGGAT 59.226 52.381 0.00 0.00 45.68 3.41
1592 1839 4.886489 CCTCCTTCCTTCATGGATTCTTTC 59.114 45.833 0.00 0.00 45.68 2.62
1597 1844 4.860022 TCCTTCATGGATTCTTTCCTTCC 58.140 43.478 0.00 0.00 45.68 3.46
1617 1876 2.036414 TCTGGAGACTGAGCCGCT 59.964 61.111 0.00 0.00 33.95 5.52
1618 1877 2.049185 TCTGGAGACTGAGCCGCTC 61.049 63.158 13.81 13.81 33.95 5.03
1619 1878 3.071206 TGGAGACTGAGCCGCTCC 61.071 66.667 17.81 9.00 46.60 4.70
1620 1879 2.757917 GGAGACTGAGCCGCTCCT 60.758 66.667 17.81 7.60 43.79 3.69
1632 1891 2.505557 GCTCCTTGCGCATGTTGC 60.506 61.111 12.75 15.71 40.69 4.17
2106 2432 0.319727 GCTCCGCTGATGAGATCCTG 60.320 60.000 0.00 0.00 31.26 3.86
2108 2434 0.758310 TCCGCTGATGAGATCCTGCT 60.758 55.000 0.00 0.00 0.00 4.24
2112 2438 1.543650 GCTGATGAGATCCTGCTGCAT 60.544 52.381 1.31 0.00 0.00 3.96
2124 2450 2.421424 CCTGCTGCATCTTACAAGAACC 59.579 50.000 1.31 0.00 38.77 3.62
2176 2509 2.900273 TCGGCTTTCGATCCCTGG 59.100 61.111 0.00 0.00 43.74 4.45
2180 2513 0.464554 GGCTTTCGATCCCTGGGAAG 60.465 60.000 21.42 16.77 34.34 3.46
2285 2627 1.090625 TGTTTCGTTGTCACACGGGG 61.091 55.000 0.00 0.00 40.74 5.73
2336 2678 2.801077 TAGCCAGTTCCTTTTAGCCC 57.199 50.000 0.00 0.00 0.00 5.19
2338 2680 2.275466 AGCCAGTTCCTTTTAGCCCTA 58.725 47.619 0.00 0.00 0.00 3.53
2340 2682 3.269643 AGCCAGTTCCTTTTAGCCCTAAT 59.730 43.478 0.00 0.00 0.00 1.73
2350 2692 5.455612 CCTTTTAGCCCTAATAATCCGGACA 60.456 44.000 6.12 0.00 0.00 4.02
2355 2697 5.030147 AGCCCTAATAATCCGGACATGATA 58.970 41.667 6.12 0.00 0.00 2.15
2364 2706 4.753516 TCCGGACATGATAGATGTGTTT 57.246 40.909 0.00 0.00 31.52 2.83
2365 2707 4.441792 TCCGGACATGATAGATGTGTTTG 58.558 43.478 0.00 0.00 31.52 2.93
2407 2749 1.274703 GGGGATGAGGAGGCACAGAA 61.275 60.000 0.00 0.00 0.00 3.02
2411 2753 2.159028 GGATGAGGAGGCACAGAACTAC 60.159 54.545 0.00 0.00 0.00 2.73
2470 2812 1.386533 CTGTGGATCTGGACCATTGC 58.613 55.000 0.00 0.00 39.69 3.56
2557 2904 1.404477 GAACAAAACAATGCCGACCG 58.596 50.000 0.00 0.00 0.00 4.79
2560 2907 2.272447 AAAACAATGCCGACCGGGG 61.272 57.895 6.32 0.00 35.78 5.73
2587 2934 2.362397 ACCGACATTCATGTATCGCTCT 59.638 45.455 0.00 0.00 41.95 4.09
2634 2981 9.754382 TTTTAATTAATCGAGCGGTAACTAGAT 57.246 29.630 0.00 0.00 33.98 1.98
2639 2986 2.031314 TCGAGCGGTAACTAGATTCGTG 59.969 50.000 0.00 0.00 0.00 4.35
2677 3024 1.863662 GAGCAAGACGGTCCTCGACA 61.864 60.000 4.14 0.00 42.43 4.35
2685 3032 0.032952 CGGTCCTCGACACAAAGGAA 59.967 55.000 0.00 0.00 43.18 3.36
2693 3040 4.201851 CCTCGACACAAAGGAATGCAATAG 60.202 45.833 0.00 0.00 34.35 1.73
2694 3041 3.126858 TCGACACAAAGGAATGCAATAGC 59.873 43.478 0.00 0.00 42.57 2.97
2702 3049 1.076777 AATGCAATAGCCCGCCAGT 60.077 52.632 0.00 0.00 41.13 4.00
2703 3050 0.684153 AATGCAATAGCCCGCCAGTT 60.684 50.000 0.00 0.00 41.13 3.16
2704 3051 0.684153 ATGCAATAGCCCGCCAGTTT 60.684 50.000 0.00 0.00 41.13 2.66
2705 3052 1.312371 TGCAATAGCCCGCCAGTTTC 61.312 55.000 0.00 0.00 41.13 2.78
2706 3053 1.032114 GCAATAGCCCGCCAGTTTCT 61.032 55.000 0.00 0.00 33.58 2.52
2707 3054 1.463674 CAATAGCCCGCCAGTTTCTT 58.536 50.000 0.00 0.00 0.00 2.52
2708 3055 1.818674 CAATAGCCCGCCAGTTTCTTT 59.181 47.619 0.00 0.00 0.00 2.52
2709 3056 2.215942 ATAGCCCGCCAGTTTCTTTT 57.784 45.000 0.00 0.00 0.00 2.27
2710 3057 1.989706 TAGCCCGCCAGTTTCTTTTT 58.010 45.000 0.00 0.00 0.00 1.94
2711 3058 1.989706 AGCCCGCCAGTTTCTTTTTA 58.010 45.000 0.00 0.00 0.00 1.52
2712 3059 1.886542 AGCCCGCCAGTTTCTTTTTAG 59.113 47.619 0.00 0.00 0.00 1.85
2713 3060 1.067846 GCCCGCCAGTTTCTTTTTAGG 60.068 52.381 0.00 0.00 0.00 2.69
2714 3061 1.544246 CCCGCCAGTTTCTTTTTAGGG 59.456 52.381 0.00 0.00 0.00 3.53
2715 3062 2.510613 CCGCCAGTTTCTTTTTAGGGA 58.489 47.619 0.00 0.00 0.00 4.20
2716 3063 2.888414 CCGCCAGTTTCTTTTTAGGGAA 59.112 45.455 0.00 0.00 0.00 3.97
2717 3064 3.509967 CCGCCAGTTTCTTTTTAGGGAAT 59.490 43.478 0.00 0.00 0.00 3.01
2718 3065 4.380550 CCGCCAGTTTCTTTTTAGGGAATC 60.381 45.833 0.00 0.00 0.00 2.52
2719 3066 4.217550 CGCCAGTTTCTTTTTAGGGAATCA 59.782 41.667 0.00 0.00 0.00 2.57
2720 3067 5.105756 CGCCAGTTTCTTTTTAGGGAATCAT 60.106 40.000 0.00 0.00 0.00 2.45
2721 3068 6.101997 GCCAGTTTCTTTTTAGGGAATCATG 58.898 40.000 0.00 0.00 0.00 3.07
2722 3069 6.633856 CCAGTTTCTTTTTAGGGAATCATGG 58.366 40.000 0.00 0.00 0.00 3.66
2723 3070 6.211384 CCAGTTTCTTTTTAGGGAATCATGGT 59.789 38.462 0.00 0.00 0.00 3.55
2724 3071 7.315890 CAGTTTCTTTTTAGGGAATCATGGTC 58.684 38.462 0.00 0.00 0.00 4.02
2725 3072 7.010160 AGTTTCTTTTTAGGGAATCATGGTCA 58.990 34.615 0.00 0.00 0.00 4.02
2726 3073 6.834168 TTCTTTTTAGGGAATCATGGTCAC 57.166 37.500 0.00 0.00 0.00 3.67
2727 3074 6.139679 TCTTTTTAGGGAATCATGGTCACT 57.860 37.500 7.19 7.19 32.19 3.41
2728 3075 6.552008 TCTTTTTAGGGAATCATGGTCACTT 58.448 36.000 7.30 0.00 29.49 3.16
2729 3076 7.010160 TCTTTTTAGGGAATCATGGTCACTTT 58.990 34.615 7.30 0.00 29.49 2.66
2730 3077 8.167392 TCTTTTTAGGGAATCATGGTCACTTTA 58.833 33.333 7.30 0.00 29.49 1.85
2731 3078 8.893563 TTTTTAGGGAATCATGGTCACTTTAT 57.106 30.769 7.30 0.00 29.49 1.40
2732 3079 9.983024 TTTTTAGGGAATCATGGTCACTTTATA 57.017 29.630 7.30 0.00 29.49 0.98
2735 3082 9.573166 TTAGGGAATCATGGTCACTTTATATTG 57.427 33.333 7.30 0.00 29.49 1.90
2736 3083 7.815383 AGGGAATCATGGTCACTTTATATTGA 58.185 34.615 0.00 0.00 0.00 2.57
2737 3084 8.451245 AGGGAATCATGGTCACTTTATATTGAT 58.549 33.333 0.00 0.00 0.00 2.57
2738 3085 8.734386 GGGAATCATGGTCACTTTATATTGATC 58.266 37.037 0.00 0.00 0.00 2.92
2739 3086 9.512588 GGAATCATGGTCACTTTATATTGATCT 57.487 33.333 0.00 0.00 0.00 2.75
2767 3114 1.915141 AGGTACTTTCTTCGTCCGGA 58.085 50.000 0.00 0.00 27.25 5.14
2768 3115 2.242043 AGGTACTTTCTTCGTCCGGAA 58.758 47.619 5.23 0.00 27.25 4.30
2769 3116 2.629617 AGGTACTTTCTTCGTCCGGAAA 59.370 45.455 5.23 0.00 27.25 3.13
2770 3117 3.260128 AGGTACTTTCTTCGTCCGGAAAT 59.740 43.478 5.23 0.00 27.25 2.17
2771 3118 4.463891 AGGTACTTTCTTCGTCCGGAAATA 59.536 41.667 5.23 0.00 27.25 1.40
2772 3119 5.128335 AGGTACTTTCTTCGTCCGGAAATAT 59.872 40.000 5.23 0.00 27.25 1.28
2773 3120 5.814188 GGTACTTTCTTCGTCCGGAAATATT 59.186 40.000 5.23 0.00 33.34 1.28
2774 3121 6.314648 GGTACTTTCTTCGTCCGGAAATATTT 59.685 38.462 5.23 0.00 33.34 1.40
2775 3122 6.178239 ACTTTCTTCGTCCGGAAATATTTG 57.822 37.500 5.23 0.00 33.34 2.32
2776 3123 5.704053 ACTTTCTTCGTCCGGAAATATTTGT 59.296 36.000 5.23 0.00 33.34 2.83
2777 3124 5.789710 TTCTTCGTCCGGAAATATTTGTC 57.210 39.130 5.23 0.00 33.34 3.18
2778 3125 5.080969 TCTTCGTCCGGAAATATTTGTCT 57.919 39.130 5.23 0.00 33.34 3.41
2779 3126 5.107133 TCTTCGTCCGGAAATATTTGTCTC 58.893 41.667 5.23 0.00 33.34 3.36
2780 3127 4.459390 TCGTCCGGAAATATTTGTCTCA 57.541 40.909 5.23 0.00 0.00 3.27
2781 3128 4.823157 TCGTCCGGAAATATTTGTCTCAA 58.177 39.130 5.23 0.00 0.00 3.02
2782 3129 5.239351 TCGTCCGGAAATATTTGTCTCAAA 58.761 37.500 5.23 0.00 0.00 2.69
2783 3130 5.701750 TCGTCCGGAAATATTTGTCTCAAAA 59.298 36.000 5.23 0.00 0.00 2.44
2784 3131 6.373216 TCGTCCGGAAATATTTGTCTCAAAAT 59.627 34.615 5.23 0.00 34.24 1.82
2785 3132 7.027161 CGTCCGGAAATATTTGTCTCAAAATT 58.973 34.615 5.23 0.02 32.16 1.82
2786 3133 8.178964 CGTCCGGAAATATTTGTCTCAAAATTA 58.821 33.333 5.23 0.00 32.16 1.40
2787 3134 9.849166 GTCCGGAAATATTTGTCTCAAAATTAA 57.151 29.630 5.23 0.00 32.16 1.40
2815 3162 7.964604 AAAAAGATGACTTACACACCTAGAC 57.035 36.000 0.00 0.00 35.05 2.59
2816 3163 4.966965 AGATGACTTACACACCTAGACG 57.033 45.455 0.00 0.00 0.00 4.18
2817 3164 3.695060 AGATGACTTACACACCTAGACGG 59.305 47.826 0.00 0.00 39.35 4.79
2818 3165 3.144657 TGACTTACACACCTAGACGGA 57.855 47.619 0.00 0.00 36.31 4.69
2819 3166 3.079578 TGACTTACACACCTAGACGGAG 58.920 50.000 0.00 0.00 36.31 4.63
2820 3167 3.244665 TGACTTACACACCTAGACGGAGA 60.245 47.826 0.00 0.00 36.31 3.71
2821 3168 3.755378 GACTTACACACCTAGACGGAGAA 59.245 47.826 0.00 0.00 36.31 2.87
2822 3169 4.147321 ACTTACACACCTAGACGGAGAAA 58.853 43.478 0.00 0.00 36.31 2.52
2823 3170 4.586001 ACTTACACACCTAGACGGAGAAAA 59.414 41.667 0.00 0.00 36.31 2.29
2824 3171 5.245526 ACTTACACACCTAGACGGAGAAAAT 59.754 40.000 0.00 0.00 36.31 1.82
2825 3172 6.435277 ACTTACACACCTAGACGGAGAAAATA 59.565 38.462 0.00 0.00 36.31 1.40
2826 3173 5.934402 ACACACCTAGACGGAGAAAATAT 57.066 39.130 0.00 0.00 36.31 1.28
2827 3174 5.903810 ACACACCTAGACGGAGAAAATATC 58.096 41.667 0.00 0.00 36.31 1.63
2828 3175 5.421056 ACACACCTAGACGGAGAAAATATCA 59.579 40.000 0.00 0.00 36.31 2.15
2829 3176 6.098409 ACACACCTAGACGGAGAAAATATCAT 59.902 38.462 0.00 0.00 36.31 2.45
2830 3177 6.422100 CACACCTAGACGGAGAAAATATCATG 59.578 42.308 0.00 0.00 36.31 3.07
2831 3178 6.323996 ACACCTAGACGGAGAAAATATCATGA 59.676 38.462 0.00 0.00 36.31 3.07
2832 3179 7.015682 ACACCTAGACGGAGAAAATATCATGAT 59.984 37.037 13.81 13.81 36.31 2.45
2833 3180 7.330454 CACCTAGACGGAGAAAATATCATGATG 59.670 40.741 18.72 0.46 36.31 3.07
2834 3181 6.312426 CCTAGACGGAGAAAATATCATGATGC 59.688 42.308 18.72 2.80 33.16 3.91
2835 3182 5.862845 AGACGGAGAAAATATCATGATGCT 58.137 37.500 18.72 7.39 0.00 3.79
2836 3183 5.699915 AGACGGAGAAAATATCATGATGCTG 59.300 40.000 18.72 6.30 0.00 4.41
2837 3184 4.214971 ACGGAGAAAATATCATGATGCTGC 59.785 41.667 18.72 10.93 0.00 5.25
2838 3185 4.214758 CGGAGAAAATATCATGATGCTGCA 59.785 41.667 18.72 4.13 0.00 4.41
2839 3186 5.106277 CGGAGAAAATATCATGATGCTGCAT 60.106 40.000 16.20 16.20 0.00 3.96
2840 3187 6.323266 GGAGAAAATATCATGATGCTGCATC 58.677 40.000 30.56 30.56 40.88 3.91
2855 3202 4.978083 CTGCATCAGCCAGTTATTTCTT 57.022 40.909 0.00 0.00 41.13 2.52
2856 3203 5.320549 CTGCATCAGCCAGTTATTTCTTT 57.679 39.130 0.00 0.00 41.13 2.52
2857 3204 5.717119 CTGCATCAGCCAGTTATTTCTTTT 58.283 37.500 0.00 0.00 41.13 2.27
2858 3205 6.100404 TGCATCAGCCAGTTATTTCTTTTT 57.900 33.333 0.00 0.00 41.13 1.94
2859 3206 7.225784 TGCATCAGCCAGTTATTTCTTTTTA 57.774 32.000 0.00 0.00 41.13 1.52
2860 3207 7.315142 TGCATCAGCCAGTTATTTCTTTTTAG 58.685 34.615 0.00 0.00 41.13 1.85
2861 3208 7.176515 TGCATCAGCCAGTTATTTCTTTTTAGA 59.823 33.333 0.00 0.00 41.13 2.10
2862 3209 8.028938 GCATCAGCCAGTTATTTCTTTTTAGAA 58.971 33.333 0.00 0.00 33.58 2.10
2863 3210 9.346725 CATCAGCCAGTTATTTCTTTTTAGAAC 57.653 33.333 0.00 0.00 0.00 3.01
2864 3211 8.691661 TCAGCCAGTTATTTCTTTTTAGAACT 57.308 30.769 0.00 0.00 0.00 3.01
2865 3212 9.787435 TCAGCCAGTTATTTCTTTTTAGAACTA 57.213 29.630 0.00 0.00 0.00 2.24
2897 3244 5.766150 TTTTGAGTCAATTACACCACTGG 57.234 39.130 6.36 0.00 0.00 4.00
2898 3245 4.431416 TTGAGTCAATTACACCACTGGT 57.569 40.909 0.08 0.00 35.62 4.00
2907 3254 3.006677 ACCACTGGTGCCACAACT 58.993 55.556 0.00 0.00 32.98 3.16
2908 3255 1.306296 ACCACTGGTGCCACAACTT 59.694 52.632 0.00 0.00 32.98 2.66
2909 3256 1.037030 ACCACTGGTGCCACAACTTG 61.037 55.000 0.00 0.00 32.98 3.16
2924 3271 6.748132 CCACAACTTGGTATGAAAAATCAGT 58.252 36.000 0.00 0.00 41.10 3.41
2925 3272 7.209475 CCACAACTTGGTATGAAAAATCAGTT 58.791 34.615 0.00 0.00 41.10 3.16
2926 3273 7.710475 CCACAACTTGGTATGAAAAATCAGTTT 59.290 33.333 0.00 0.00 41.10 2.66
2927 3274 9.743057 CACAACTTGGTATGAAAAATCAGTTTA 57.257 29.630 0.00 0.00 0.00 2.01
2928 3275 9.965824 ACAACTTGGTATGAAAAATCAGTTTAG 57.034 29.630 0.00 0.00 0.00 1.85
2929 3276 9.965824 CAACTTGGTATGAAAAATCAGTTTAGT 57.034 29.630 0.00 0.00 0.00 2.24
2930 3277 9.965824 AACTTGGTATGAAAAATCAGTTTAGTG 57.034 29.630 0.00 0.00 0.00 2.74
2931 3278 8.082242 ACTTGGTATGAAAAATCAGTTTAGTGC 58.918 33.333 0.00 0.00 0.00 4.40
2932 3279 7.759489 TGGTATGAAAAATCAGTTTAGTGCT 57.241 32.000 0.00 0.00 0.00 4.40
2933 3280 8.856153 TGGTATGAAAAATCAGTTTAGTGCTA 57.144 30.769 0.00 0.00 0.00 3.49
2934 3281 9.290988 TGGTATGAAAAATCAGTTTAGTGCTAA 57.709 29.630 0.00 0.00 0.00 3.09
2941 3288 7.930513 AAATCAGTTTAGTGCTAAAACTTGC 57.069 32.000 6.02 0.00 36.86 4.01
2942 3289 5.090652 TCAGTTTAGTGCTAAAACTTGCG 57.909 39.130 6.02 1.04 36.86 4.85
2943 3290 4.024387 TCAGTTTAGTGCTAAAACTTGCGG 60.024 41.667 6.02 0.00 36.86 5.69
2944 3291 3.881089 AGTTTAGTGCTAAAACTTGCGGT 59.119 39.130 6.02 0.00 36.86 5.68
2945 3292 5.049954 CAGTTTAGTGCTAAAACTTGCGGTA 60.050 40.000 6.02 0.00 36.86 4.02
2946 3293 5.704053 AGTTTAGTGCTAAAACTTGCGGTAT 59.296 36.000 6.02 0.00 36.86 2.73
2947 3294 6.875195 AGTTTAGTGCTAAAACTTGCGGTATA 59.125 34.615 6.02 0.00 36.86 1.47
2948 3295 6.651755 TTAGTGCTAAAACTTGCGGTATAC 57.348 37.500 0.00 0.00 0.00 1.47
2949 3296 4.571919 AGTGCTAAAACTTGCGGTATACA 58.428 39.130 5.01 0.00 0.00 2.29
2950 3297 5.183228 AGTGCTAAAACTTGCGGTATACAT 58.817 37.500 5.01 0.00 0.00 2.29
2951 3298 5.646360 AGTGCTAAAACTTGCGGTATACATT 59.354 36.000 5.01 0.00 0.00 2.71
2952 3299 5.737290 GTGCTAAAACTTGCGGTATACATTG 59.263 40.000 5.01 0.00 0.00 2.82
2953 3300 5.644206 TGCTAAAACTTGCGGTATACATTGA 59.356 36.000 5.01 0.00 0.00 2.57
2954 3301 6.149640 TGCTAAAACTTGCGGTATACATTGAA 59.850 34.615 5.01 0.00 0.00 2.69
2955 3302 6.468000 GCTAAAACTTGCGGTATACATTGAAC 59.532 38.462 5.01 0.00 0.00 3.18
2956 3303 6.569179 AAAACTTGCGGTATACATTGAACT 57.431 33.333 5.01 0.00 0.00 3.01
2957 3304 5.545658 AACTTGCGGTATACATTGAACTG 57.454 39.130 5.01 0.00 0.00 3.16
2958 3305 4.827692 ACTTGCGGTATACATTGAACTGA 58.172 39.130 5.01 0.00 0.00 3.41
2959 3306 5.428253 ACTTGCGGTATACATTGAACTGAT 58.572 37.500 5.01 0.00 0.00 2.90
2960 3307 5.294306 ACTTGCGGTATACATTGAACTGATG 59.706 40.000 5.01 0.00 0.00 3.07
2961 3308 3.559655 TGCGGTATACATTGAACTGATGC 59.440 43.478 5.01 0.00 0.00 3.91
2962 3309 3.058914 GCGGTATACATTGAACTGATGCC 60.059 47.826 5.01 0.00 0.00 4.40
2963 3310 4.126437 CGGTATACATTGAACTGATGCCA 58.874 43.478 5.01 0.00 0.00 4.92
2964 3311 4.756642 CGGTATACATTGAACTGATGCCAT 59.243 41.667 5.01 0.00 0.00 4.40
2965 3312 5.931724 CGGTATACATTGAACTGATGCCATA 59.068 40.000 5.01 0.00 0.00 2.74
2966 3313 6.426633 CGGTATACATTGAACTGATGCCATAA 59.573 38.462 5.01 0.00 0.00 1.90
2967 3314 7.571244 CGGTATACATTGAACTGATGCCATAAC 60.571 40.741 5.01 0.00 0.00 1.89
2968 3315 7.445402 GGTATACATTGAACTGATGCCATAACT 59.555 37.037 5.01 0.00 0.00 2.24
2969 3316 7.886629 ATACATTGAACTGATGCCATAACTT 57.113 32.000 0.00 0.00 0.00 2.66
2970 3317 5.957798 ACATTGAACTGATGCCATAACTTG 58.042 37.500 0.00 0.00 0.00 3.16
2982 3329 4.336532 CCATAACTTGGCTTTGACGTAC 57.663 45.455 0.00 0.00 39.09 3.67
2983 3330 3.749088 CCATAACTTGGCTTTGACGTACA 59.251 43.478 0.00 0.00 39.09 2.90
2984 3331 4.394920 CCATAACTTGGCTTTGACGTACAT 59.605 41.667 0.00 0.00 39.09 2.29
2985 3332 5.583061 CCATAACTTGGCTTTGACGTACATA 59.417 40.000 0.00 0.00 39.09 2.29
2986 3333 6.260050 CCATAACTTGGCTTTGACGTACATAT 59.740 38.462 0.00 0.00 39.09 1.78
2987 3334 7.439955 CCATAACTTGGCTTTGACGTACATATA 59.560 37.037 0.00 0.00 39.09 0.86
2988 3335 6.657836 AACTTGGCTTTGACGTACATATAC 57.342 37.500 0.00 0.00 0.00 1.47
3015 3362 8.221801 GTGCAAATCACATTTTTATACGAACA 57.778 30.769 0.00 0.00 44.98 3.18
3016 3363 8.695284 GTGCAAATCACATTTTTATACGAACAA 58.305 29.630 0.00 0.00 44.98 2.83
3017 3364 8.910666 TGCAAATCACATTTTTATACGAACAAG 58.089 29.630 0.00 0.00 0.00 3.16
3018 3365 9.123709 GCAAATCACATTTTTATACGAACAAGA 57.876 29.630 0.00 0.00 0.00 3.02
3021 3368 8.841444 ATCACATTTTTATACGAACAAGATGC 57.159 30.769 0.00 0.00 0.00 3.91
3022 3369 8.039603 TCACATTTTTATACGAACAAGATGCT 57.960 30.769 0.00 0.00 0.00 3.79
3023 3370 7.962373 TCACATTTTTATACGAACAAGATGCTG 59.038 33.333 0.00 0.00 0.00 4.41
3024 3371 7.962373 CACATTTTTATACGAACAAGATGCTGA 59.038 33.333 0.00 0.00 0.00 4.26
3025 3372 8.677300 ACATTTTTATACGAACAAGATGCTGAT 58.323 29.630 0.00 0.00 0.00 2.90
3026 3373 9.507280 CATTTTTATACGAACAAGATGCTGATT 57.493 29.630 0.00 0.00 0.00 2.57
3029 3376 7.946655 TTATACGAACAAGATGCTGATTAGG 57.053 36.000 0.00 0.00 0.00 2.69
3030 3377 4.207891 ACGAACAAGATGCTGATTAGGT 57.792 40.909 0.00 0.00 0.00 3.08
3031 3378 5.339008 ACGAACAAGATGCTGATTAGGTA 57.661 39.130 0.00 0.00 0.00 3.08
3032 3379 5.109903 ACGAACAAGATGCTGATTAGGTAC 58.890 41.667 0.00 0.00 0.00 3.34
3033 3380 4.207224 CGAACAAGATGCTGATTAGGTACG 59.793 45.833 0.00 0.00 0.00 3.67
3034 3381 3.458189 ACAAGATGCTGATTAGGTACGC 58.542 45.455 0.00 0.00 0.00 4.42
3035 3382 2.802816 CAAGATGCTGATTAGGTACGCC 59.197 50.000 0.00 0.00 0.00 5.68
3036 3383 2.039418 AGATGCTGATTAGGTACGCCA 58.961 47.619 0.00 0.00 37.19 5.69
3037 3384 2.434336 AGATGCTGATTAGGTACGCCAA 59.566 45.455 0.00 0.00 37.19 4.52
3038 3385 2.018542 TGCTGATTAGGTACGCCAAC 57.981 50.000 0.00 0.00 37.19 3.77
3059 3406 4.687215 GCACGGAGCCTGCTGTCA 62.687 66.667 0.00 0.00 37.23 3.58
3060 3407 2.433838 CACGGAGCCTGCTGTCAG 60.434 66.667 0.00 0.00 40.02 3.51
3061 3408 4.385405 ACGGAGCCTGCTGTCAGC 62.385 66.667 18.32 18.32 42.82 4.26
3063 3410 4.074526 GGAGCCTGCTGTCAGCGA 62.075 66.667 19.68 8.35 46.26 4.93
3064 3411 2.813042 GAGCCTGCTGTCAGCGAC 60.813 66.667 19.68 11.33 46.26 5.19
3065 3412 3.293901 GAGCCTGCTGTCAGCGACT 62.294 63.158 19.68 15.72 46.26 4.18
3066 3413 1.938657 GAGCCTGCTGTCAGCGACTA 61.939 60.000 19.68 1.33 46.26 2.59
3067 3414 1.518133 GCCTGCTGTCAGCGACTAG 60.518 63.158 19.68 11.13 46.26 2.57
3068 3415 1.518133 CCTGCTGTCAGCGACTAGC 60.518 63.158 19.68 17.26 46.26 3.42
3077 3424 3.923614 GCGACTAGCGGCATAGTG 58.076 61.111 14.10 9.23 41.29 2.74
3078 3425 1.661821 GCGACTAGCGGCATAGTGG 60.662 63.158 14.10 13.64 41.29 4.00
3079 3426 2.030551 CGACTAGCGGCATAGTGGA 58.969 57.895 14.10 0.00 36.13 4.02
3080 3427 0.317938 CGACTAGCGGCATAGTGGAC 60.318 60.000 14.10 3.25 36.13 4.02
3081 3428 0.317938 GACTAGCGGCATAGTGGACG 60.318 60.000 14.10 0.00 43.80 4.79
3082 3429 1.035932 ACTAGCGGCATAGTGGACGT 61.036 55.000 1.45 0.00 42.62 4.34
3083 3430 0.595053 CTAGCGGCATAGTGGACGTG 60.595 60.000 1.45 0.00 42.62 4.49
3084 3431 1.317431 TAGCGGCATAGTGGACGTGT 61.317 55.000 1.45 0.00 42.62 4.49
3085 3432 2.452813 GCGGCATAGTGGACGTGTG 61.453 63.158 0.00 0.00 42.62 3.82
3086 3433 1.809619 CGGCATAGTGGACGTGTGG 60.810 63.158 0.00 0.00 33.69 4.17
3087 3434 2.106683 GGCATAGTGGACGTGTGGC 61.107 63.158 0.00 0.00 0.00 5.01
3088 3435 2.106683 GCATAGTGGACGTGTGGCC 61.107 63.158 0.00 0.00 0.00 5.36
3089 3436 1.596934 CATAGTGGACGTGTGGCCT 59.403 57.895 3.32 0.00 0.00 5.19
3090 3437 0.740868 CATAGTGGACGTGTGGCCTG 60.741 60.000 3.32 0.00 0.00 4.85
3091 3438 2.521958 ATAGTGGACGTGTGGCCTGC 62.522 60.000 3.32 0.00 0.00 4.85
3092 3439 4.626081 GTGGACGTGTGGCCTGCT 62.626 66.667 3.32 0.00 0.00 4.24
3093 3440 3.872603 TGGACGTGTGGCCTGCTT 61.873 61.111 3.32 0.00 0.00 3.91
3094 3441 2.594592 GGACGTGTGGCCTGCTTT 60.595 61.111 3.32 0.00 0.00 3.51
3095 3442 2.193536 GGACGTGTGGCCTGCTTTT 61.194 57.895 3.32 0.00 0.00 2.27
3096 3443 1.733526 GACGTGTGGCCTGCTTTTT 59.266 52.632 3.32 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.334759 GGCTGATGACGAGTAAGTACAGTA 59.665 45.833 0.00 0.00 0.00 2.74
22 23 3.128938 GGCTGATGACGAGTAAGTACAGT 59.871 47.826 0.00 0.00 0.00 3.55
23 24 3.378742 AGGCTGATGACGAGTAAGTACAG 59.621 47.826 0.00 0.00 0.00 2.74
24 25 3.353557 AGGCTGATGACGAGTAAGTACA 58.646 45.455 0.00 0.00 0.00 2.90
25 26 4.106197 CAAGGCTGATGACGAGTAAGTAC 58.894 47.826 0.00 0.00 0.00 2.73
26 27 4.014406 TCAAGGCTGATGACGAGTAAGTA 58.986 43.478 0.00 0.00 0.00 2.24
27 28 2.826128 TCAAGGCTGATGACGAGTAAGT 59.174 45.455 0.00 0.00 0.00 2.24
28 29 3.182967 GTCAAGGCTGATGACGAGTAAG 58.817 50.000 3.73 0.00 37.98 2.34
29 30 3.232213 GTCAAGGCTGATGACGAGTAA 57.768 47.619 3.73 0.00 37.98 2.24
91 96 7.336427 TGTTCTGTTTTTGAATTTGAAATGGCT 59.664 29.630 0.00 0.00 0.00 4.75
136 141 3.119352 GGGTTTCTTACGGTCATACGACT 60.119 47.826 0.00 0.00 42.21 4.18
137 142 3.182182 GGGTTTCTTACGGTCATACGAC 58.818 50.000 0.00 0.00 41.80 4.34
138 143 2.824936 TGGGTTTCTTACGGTCATACGA 59.175 45.455 0.00 0.00 37.61 3.43
139 144 2.925563 GTGGGTTTCTTACGGTCATACG 59.074 50.000 0.00 0.00 40.31 3.06
140 145 4.179298 GAGTGGGTTTCTTACGGTCATAC 58.821 47.826 0.00 0.00 0.00 2.39
141 146 3.833650 TGAGTGGGTTTCTTACGGTCATA 59.166 43.478 0.00 0.00 0.00 2.15
142 147 2.635915 TGAGTGGGTTTCTTACGGTCAT 59.364 45.455 0.00 0.00 0.00 3.06
143 148 2.040939 TGAGTGGGTTTCTTACGGTCA 58.959 47.619 0.00 0.00 0.00 4.02
144 149 2.410939 GTGAGTGGGTTTCTTACGGTC 58.589 52.381 0.00 0.00 0.00 4.79
145 150 1.071228 GGTGAGTGGGTTTCTTACGGT 59.929 52.381 0.00 0.00 0.00 4.83
177 182 7.781056 TCATCTAATTGGGCTGAATTTTTACC 58.219 34.615 0.00 0.00 0.00 2.85
196 223 2.382882 CAGCTGGTGAGGTCTCATCTA 58.617 52.381 5.57 1.14 41.18 1.98
224 251 3.041351 TACGTGCAGCTGCGGTTG 61.041 61.111 31.66 23.48 45.83 3.77
225 252 3.041940 GTACGTGCAGCTGCGGTT 61.042 61.111 31.66 21.58 45.83 4.44
226 253 4.293648 TGTACGTGCAGCTGCGGT 62.294 61.111 32.11 30.95 45.83 5.68
227 254 3.777925 GTGTACGTGCAGCTGCGG 61.778 66.667 32.11 27.35 45.83 5.69
228 255 3.777925 GGTGTACGTGCAGCTGCG 61.778 66.667 32.11 21.70 45.83 5.18
229 256 2.664851 TGGTGTACGTGCAGCTGC 60.665 61.111 31.89 31.89 42.50 5.25
230 257 1.594021 TGTGGTGTACGTGCAGCTG 60.594 57.895 30.71 10.11 37.70 4.24
231 258 1.594293 GTGTGGTGTACGTGCAGCT 60.594 57.895 30.71 0.00 37.70 4.24
232 259 0.319211 TAGTGTGGTGTACGTGCAGC 60.319 55.000 25.98 25.98 37.38 5.25
233 260 1.269361 TGTAGTGTGGTGTACGTGCAG 60.269 52.381 6.58 0.00 0.00 4.41
234 261 0.745468 TGTAGTGTGGTGTACGTGCA 59.255 50.000 0.82 0.82 0.00 4.57
235 262 1.269413 ACTGTAGTGTGGTGTACGTGC 60.269 52.381 0.00 0.00 0.00 5.34
236 263 2.787601 ACTGTAGTGTGGTGTACGTG 57.212 50.000 0.00 0.00 0.00 4.49
251 278 1.597027 GGTGCTTGGCGTGTACTGT 60.597 57.895 0.00 0.00 0.00 3.55
284 311 4.227134 CTGGCCGACCTCCCATCG 62.227 72.222 0.00 0.00 39.33 3.84
287 314 3.003173 CTTCTGGCCGACCTCCCA 61.003 66.667 0.00 0.00 36.63 4.37
411 497 1.749033 CCTTCTAGATCGGCACCCC 59.251 63.158 0.00 0.00 0.00 4.95
412 498 1.069935 GCCTTCTAGATCGGCACCC 59.930 63.158 22.16 0.28 43.25 4.61
413 499 1.300233 CGCCTTCTAGATCGGCACC 60.300 63.158 24.87 5.09 43.95 5.01
414 500 0.315568 ATCGCCTTCTAGATCGGCAC 59.684 55.000 24.87 5.64 43.95 5.01
485 571 2.985847 GCTTTTGCCCGCCACTCT 60.986 61.111 0.00 0.00 40.15 3.24
552 638 4.971125 GGTAGATGGGCGAGCGGC 62.971 72.222 8.00 8.00 42.51 6.53
553 639 4.301027 GGGTAGATGGGCGAGCGG 62.301 72.222 0.00 0.00 0.00 5.52
556 642 3.616721 CCGGGGTAGATGGGCGAG 61.617 72.222 0.00 0.00 0.00 5.03
685 793 2.692368 TGGATCCAGCCCCTCCAC 60.692 66.667 11.44 0.00 34.17 4.02
686 794 2.367377 CTGGATCCAGCCCCTCCA 60.367 66.667 28.45 0.00 37.24 3.86
768 899 3.993584 TCTGCGGTTTACGGGCGT 61.994 61.111 0.00 0.00 44.51 5.68
770 901 3.484547 CGTCTGCGGTTTACGGGC 61.485 66.667 0.00 0.00 44.51 6.13
771 902 3.484547 GCGTCTGCGGTTTACGGG 61.485 66.667 7.29 0.00 44.51 5.28
912 1050 2.825836 CGGAGCTGGGTGGATTGC 60.826 66.667 0.00 0.00 0.00 3.56
928 1126 2.512515 GGGTAGCTGAGCTTGGCG 60.513 66.667 14.14 0.00 40.44 5.69
931 1129 0.322975 AGTGTGGGTAGCTGAGCTTG 59.677 55.000 14.14 0.00 40.44 4.01
932 1130 1.002544 GAAGTGTGGGTAGCTGAGCTT 59.997 52.381 14.14 0.00 40.44 3.74
966 1164 3.391296 TGTTTCTTTCTCACTACTGGGCT 59.609 43.478 0.00 0.00 0.00 5.19
967 1165 3.740115 TGTTTCTTTCTCACTACTGGGC 58.260 45.455 0.00 0.00 0.00 5.36
968 1166 4.627467 CGATGTTTCTTTCTCACTACTGGG 59.373 45.833 0.00 0.00 0.00 4.45
971 1169 6.153067 CACTCGATGTTTCTTTCTCACTACT 58.847 40.000 0.00 0.00 0.00 2.57
1289 1508 1.738099 GCCGATGAACTGCGACTGT 60.738 57.895 0.00 0.00 0.00 3.55
1291 1510 2.125512 GGCCGATGAACTGCGACT 60.126 61.111 0.00 0.00 0.00 4.18
1349 1581 3.800323 GAAACACACCCGCGCACAC 62.800 63.158 8.75 0.00 0.00 3.82
1356 1597 1.831389 CGACAGCTGAAACACACCCG 61.831 60.000 23.35 5.43 0.00 5.28
1358 1599 0.582005 GACGACAGCTGAAACACACC 59.418 55.000 23.35 0.00 0.00 4.16
1366 1612 4.056125 CCCTGCGACGACAGCTGA 62.056 66.667 23.35 0.00 36.29 4.26
1513 1759 1.152546 GGTGTGGAAGGCCTTGGTT 60.153 57.895 26.25 0.00 34.31 3.67
1581 1827 6.741431 CCAGAGCGGAAGGAAAGAATCCAT 62.741 50.000 0.00 0.00 44.59 3.41
1582 1828 5.507176 CCAGAGCGGAAGGAAAGAATCCA 62.507 52.174 0.00 0.00 44.59 3.41
1583 1829 3.002451 CCAGAGCGGAAGGAAAGAATCC 61.002 54.545 0.00 0.00 43.12 3.01
1584 1830 2.093447 TCCAGAGCGGAAGGAAAGAATC 60.093 50.000 0.00 0.00 42.52 2.52
1585 1831 1.909302 TCCAGAGCGGAAGGAAAGAAT 59.091 47.619 0.00 0.00 42.52 2.40
1586 1832 1.276421 CTCCAGAGCGGAAGGAAAGAA 59.724 52.381 0.00 0.00 45.75 2.52
1592 1839 0.967887 TCAGTCTCCAGAGCGGAAGG 60.968 60.000 0.00 0.00 45.75 3.46
2106 2432 2.159653 CGTGGTTCTTGTAAGATGCAGC 60.160 50.000 0.00 0.00 34.49 5.25
2108 2434 1.804151 GCGTGGTTCTTGTAAGATGCA 59.196 47.619 0.00 0.00 34.49 3.96
2112 2438 3.394674 TCATGCGTGGTTCTTGTAAGA 57.605 42.857 5.98 0.00 0.00 2.10
2124 2450 2.726691 GACGACGGGTTCATGCGTG 61.727 63.158 0.00 0.00 35.09 5.34
2173 2506 1.339151 CCTTCCTTCGTTCCTTCCCAG 60.339 57.143 0.00 0.00 0.00 4.45
2176 2509 2.038689 ACTTCCTTCCTTCGTTCCTTCC 59.961 50.000 0.00 0.00 0.00 3.46
2180 2513 1.157585 GCACTTCCTTCCTTCGTTCC 58.842 55.000 0.00 0.00 0.00 3.62
2285 2627 5.050490 ACTTGCATAAGTACATGGATCGAC 58.950 41.667 0.00 0.00 45.07 4.20
2336 2678 8.253810 ACACATCTATCATGTCCGGATTATTAG 58.746 37.037 7.81 6.26 0.00 1.73
2338 2680 7.009179 ACACATCTATCATGTCCGGATTATT 57.991 36.000 7.81 0.00 0.00 1.40
2340 2682 6.419484 AACACATCTATCATGTCCGGATTA 57.581 37.500 7.81 0.00 0.00 1.75
2350 2692 7.613022 ACATGAGGAAACAAACACATCTATCAT 59.387 33.333 0.00 0.00 0.00 2.45
2355 2697 4.889409 ACACATGAGGAAACAAACACATCT 59.111 37.500 0.00 0.00 0.00 2.90
2364 2706 4.126437 CACACAGTACACATGAGGAAACA 58.874 43.478 0.00 0.00 0.00 2.83
2365 2707 3.058914 GCACACAGTACACATGAGGAAAC 60.059 47.826 0.00 0.00 0.00 2.78
2407 2749 0.036294 GGCCGCCTTCTTCTTGTAGT 60.036 55.000 0.71 0.00 0.00 2.73
2411 2753 0.242017 CTTTGGCCGCCTTCTTCTTG 59.758 55.000 11.61 0.00 0.00 3.02
2470 2812 1.949465 CCGGATAAACTTCCCCTTCG 58.051 55.000 0.00 0.00 31.61 3.79
2560 2907 0.541863 ACATGAATGTCGGTCCTCCC 59.458 55.000 0.00 0.00 35.87 4.30
2587 2934 4.412060 AATTCCTGGGTATTTTGGGTGA 57.588 40.909 0.00 0.00 0.00 4.02
2632 2979 0.788391 AAAACCGAGCGTCACGAATC 59.212 50.000 0.00 0.00 0.00 2.52
2634 2981 0.528033 TGAAAACCGAGCGTCACGAA 60.528 50.000 0.00 0.00 0.00 3.85
2677 3024 1.750778 CGGGCTATTGCATTCCTTTGT 59.249 47.619 0.66 0.00 41.91 2.83
2685 3032 0.684153 AAACTGGCGGGCTATTGCAT 60.684 50.000 2.38 0.00 41.91 3.96
2693 3040 1.067846 CCTAAAAAGAAACTGGCGGGC 60.068 52.381 0.00 0.00 0.00 6.13
2694 3041 1.544246 CCCTAAAAAGAAACTGGCGGG 59.456 52.381 0.00 0.00 0.00 6.13
2702 3049 7.010160 AGTGACCATGATTCCCTAAAAAGAAA 58.990 34.615 0.00 0.00 0.00 2.52
2703 3050 6.552008 AGTGACCATGATTCCCTAAAAAGAA 58.448 36.000 0.00 0.00 0.00 2.52
2704 3051 6.139679 AGTGACCATGATTCCCTAAAAAGA 57.860 37.500 0.00 0.00 0.00 2.52
2705 3052 6.840780 AAGTGACCATGATTCCCTAAAAAG 57.159 37.500 0.00 0.00 0.00 2.27
2706 3053 8.893563 ATAAAGTGACCATGATTCCCTAAAAA 57.106 30.769 0.00 0.00 0.00 1.94
2709 3056 9.573166 CAATATAAAGTGACCATGATTCCCTAA 57.427 33.333 0.00 0.00 0.00 2.69
2710 3057 8.944138 TCAATATAAAGTGACCATGATTCCCTA 58.056 33.333 0.00 0.00 0.00 3.53
2711 3058 7.815383 TCAATATAAAGTGACCATGATTCCCT 58.185 34.615 0.00 0.00 0.00 4.20
2712 3059 8.641498 ATCAATATAAAGTGACCATGATTCCC 57.359 34.615 0.00 0.00 31.50 3.97
2713 3060 9.512588 AGATCAATATAAAGTGACCATGATTCC 57.487 33.333 0.00 0.00 31.50 3.01
2736 3083 9.939802 ACGAAGAAAGTACCTTACATTTTAGAT 57.060 29.630 0.00 0.00 0.00 1.98
2737 3084 9.415544 GACGAAGAAAGTACCTTACATTTTAGA 57.584 33.333 0.00 0.00 0.00 2.10
2738 3085 8.654215 GGACGAAGAAAGTACCTTACATTTTAG 58.346 37.037 0.00 0.00 0.00 1.85
2739 3086 7.329226 CGGACGAAGAAAGTACCTTACATTTTA 59.671 37.037 0.00 0.00 0.00 1.52
2740 3087 6.146673 CGGACGAAGAAAGTACCTTACATTTT 59.853 38.462 0.00 0.00 0.00 1.82
2741 3088 5.636543 CGGACGAAGAAAGTACCTTACATTT 59.363 40.000 0.00 0.00 0.00 2.32
2742 3089 5.166398 CGGACGAAGAAAGTACCTTACATT 58.834 41.667 0.00 0.00 0.00 2.71
2743 3090 4.381292 CCGGACGAAGAAAGTACCTTACAT 60.381 45.833 0.00 0.00 0.00 2.29
2744 3091 3.057315 CCGGACGAAGAAAGTACCTTACA 60.057 47.826 0.00 0.00 0.00 2.41
2745 3092 3.191371 TCCGGACGAAGAAAGTACCTTAC 59.809 47.826 0.00 0.00 0.00 2.34
2746 3093 3.420893 TCCGGACGAAGAAAGTACCTTA 58.579 45.455 0.00 0.00 0.00 2.69
2747 3094 2.242043 TCCGGACGAAGAAAGTACCTT 58.758 47.619 0.00 0.00 0.00 3.50
2748 3095 1.915141 TCCGGACGAAGAAAGTACCT 58.085 50.000 0.00 0.00 0.00 3.08
2749 3096 2.730550 TTCCGGACGAAGAAAGTACC 57.269 50.000 1.83 0.00 0.00 3.34
2750 3097 6.898912 AATATTTCCGGACGAAGAAAGTAC 57.101 37.500 1.83 0.00 35.57 2.73
2751 3098 6.875195 ACAAATATTTCCGGACGAAGAAAGTA 59.125 34.615 1.83 0.00 35.57 2.24
2752 3099 5.704053 ACAAATATTTCCGGACGAAGAAAGT 59.296 36.000 1.83 0.00 35.57 2.66
2753 3100 6.092259 AGACAAATATTTCCGGACGAAGAAAG 59.908 38.462 1.83 0.00 35.57 2.62
2754 3101 5.935789 AGACAAATATTTCCGGACGAAGAAA 59.064 36.000 1.83 0.00 36.48 2.52
2755 3102 5.484715 AGACAAATATTTCCGGACGAAGAA 58.515 37.500 1.83 0.00 0.00 2.52
2756 3103 5.080969 AGACAAATATTTCCGGACGAAGA 57.919 39.130 1.83 0.00 0.00 2.87
2757 3104 4.868171 TGAGACAAATATTTCCGGACGAAG 59.132 41.667 1.83 0.00 0.00 3.79
2758 3105 4.823157 TGAGACAAATATTTCCGGACGAA 58.177 39.130 1.83 0.00 0.00 3.85
2759 3106 4.459390 TGAGACAAATATTTCCGGACGA 57.541 40.909 1.83 0.00 0.00 4.20
2760 3107 5.539582 TTTGAGACAAATATTTCCGGACG 57.460 39.130 1.83 0.00 0.00 4.79
2761 3108 9.849166 TTAATTTTGAGACAAATATTTCCGGAC 57.151 29.630 1.83 0.00 0.00 4.79
2791 3138 6.645415 CGTCTAGGTGTGTAAGTCATCTTTTT 59.355 38.462 0.00 0.00 35.36 1.94
2792 3139 6.157211 CGTCTAGGTGTGTAAGTCATCTTTT 58.843 40.000 0.00 0.00 35.36 2.27
2793 3140 5.336531 CCGTCTAGGTGTGTAAGTCATCTTT 60.337 44.000 0.00 0.00 33.66 2.52
2794 3141 4.158025 CCGTCTAGGTGTGTAAGTCATCTT 59.842 45.833 0.00 0.00 35.02 2.40
2795 3142 3.695060 CCGTCTAGGTGTGTAAGTCATCT 59.305 47.826 0.00 0.00 34.51 2.90
2796 3143 3.693085 TCCGTCTAGGTGTGTAAGTCATC 59.307 47.826 0.00 0.00 41.99 2.92
2797 3144 3.693807 TCCGTCTAGGTGTGTAAGTCAT 58.306 45.455 0.00 0.00 41.99 3.06
2798 3145 3.079578 CTCCGTCTAGGTGTGTAAGTCA 58.920 50.000 0.00 0.00 41.99 3.41
2799 3146 3.341823 TCTCCGTCTAGGTGTGTAAGTC 58.658 50.000 0.00 0.00 41.99 3.01
2800 3147 3.430042 TCTCCGTCTAGGTGTGTAAGT 57.570 47.619 0.00 0.00 41.99 2.24
2801 3148 4.778534 TTTCTCCGTCTAGGTGTGTAAG 57.221 45.455 0.00 0.00 41.99 2.34
2802 3149 5.733620 ATTTTCTCCGTCTAGGTGTGTAA 57.266 39.130 0.00 0.00 41.99 2.41
2803 3150 6.604396 TGATATTTTCTCCGTCTAGGTGTGTA 59.396 38.462 0.00 0.00 41.99 2.90
2804 3151 5.421056 TGATATTTTCTCCGTCTAGGTGTGT 59.579 40.000 0.00 0.00 41.99 3.72
2805 3152 5.902681 TGATATTTTCTCCGTCTAGGTGTG 58.097 41.667 0.00 0.00 41.99 3.82
2806 3153 6.323996 TCATGATATTTTCTCCGTCTAGGTGT 59.676 38.462 0.00 0.00 41.99 4.16
2807 3154 6.749139 TCATGATATTTTCTCCGTCTAGGTG 58.251 40.000 0.00 0.00 41.99 4.00
2808 3155 6.978674 TCATGATATTTTCTCCGTCTAGGT 57.021 37.500 0.00 0.00 41.99 3.08
2809 3156 6.312426 GCATCATGATATTTTCTCCGTCTAGG 59.688 42.308 8.15 0.00 42.97 3.02
2810 3157 7.063191 CAGCATCATGATATTTTCTCCGTCTAG 59.937 40.741 8.15 0.00 0.00 2.43
2811 3158 6.870439 CAGCATCATGATATTTTCTCCGTCTA 59.130 38.462 8.15 0.00 0.00 2.59
2812 3159 5.699915 CAGCATCATGATATTTTCTCCGTCT 59.300 40.000 8.15 0.00 0.00 4.18
2813 3160 5.616424 GCAGCATCATGATATTTTCTCCGTC 60.616 44.000 8.15 0.00 0.00 4.79
2814 3161 4.214971 GCAGCATCATGATATTTTCTCCGT 59.785 41.667 8.15 0.00 0.00 4.69
2815 3162 4.214758 TGCAGCATCATGATATTTTCTCCG 59.785 41.667 8.15 0.00 0.00 4.63
2816 3163 5.700722 TGCAGCATCATGATATTTTCTCC 57.299 39.130 8.15 0.00 0.00 3.71
2817 3164 6.909909 TGATGCAGCATCATGATATTTTCTC 58.090 36.000 30.67 5.02 44.60 2.87
2818 3165 6.894339 TGATGCAGCATCATGATATTTTCT 57.106 33.333 30.67 0.00 44.60 2.52
2834 3181 4.978083 AAGAAATAACTGGCTGATGCAG 57.022 40.909 0.00 0.00 41.91 4.41
2835 3182 5.726980 AAAAGAAATAACTGGCTGATGCA 57.273 34.783 0.00 0.00 41.91 3.96
2836 3183 7.538575 TCTAAAAAGAAATAACTGGCTGATGC 58.461 34.615 0.00 0.00 38.76 3.91
2837 3184 9.346725 GTTCTAAAAAGAAATAACTGGCTGATG 57.653 33.333 0.00 0.00 0.00 3.07
2838 3185 9.301897 AGTTCTAAAAAGAAATAACTGGCTGAT 57.698 29.630 0.00 0.00 0.00 2.90
2839 3186 8.691661 AGTTCTAAAAAGAAATAACTGGCTGA 57.308 30.769 0.00 0.00 0.00 4.26
2874 3221 5.654650 ACCAGTGGTGTAATTGACTCAAAAA 59.345 36.000 15.86 0.00 32.98 1.94
2875 3222 5.197451 ACCAGTGGTGTAATTGACTCAAAA 58.803 37.500 15.86 0.00 32.98 2.44
2876 3223 4.787551 ACCAGTGGTGTAATTGACTCAAA 58.212 39.130 15.86 0.00 32.98 2.69
2877 3224 4.431416 ACCAGTGGTGTAATTGACTCAA 57.569 40.909 15.86 0.00 32.98 3.02
2890 3237 1.037030 CAAGTTGTGGCACCAGTGGT 61.037 55.000 16.26 9.70 35.62 4.16
2891 3238 1.735360 CAAGTTGTGGCACCAGTGG 59.265 57.895 16.26 7.91 0.00 4.00
2892 3239 1.735360 CCAAGTTGTGGCACCAGTG 59.265 57.895 16.26 7.86 41.72 3.66
2893 3240 4.258206 CCAAGTTGTGGCACCAGT 57.742 55.556 16.26 3.84 41.72 4.00
2901 3248 8.647143 AAACTGATTTTTCATACCAAGTTGTG 57.353 30.769 1.45 0.00 0.00 3.33
2902 3249 9.965824 CTAAACTGATTTTTCATACCAAGTTGT 57.034 29.630 1.45 0.00 0.00 3.32
2903 3250 9.965824 ACTAAACTGATTTTTCATACCAAGTTG 57.034 29.630 0.00 0.00 0.00 3.16
2904 3251 9.965824 CACTAAACTGATTTTTCATACCAAGTT 57.034 29.630 0.00 0.00 0.00 2.66
2905 3252 8.082242 GCACTAAACTGATTTTTCATACCAAGT 58.918 33.333 0.00 0.00 0.00 3.16
2906 3253 8.299570 AGCACTAAACTGATTTTTCATACCAAG 58.700 33.333 0.00 0.00 0.00 3.61
2907 3254 8.177119 AGCACTAAACTGATTTTTCATACCAA 57.823 30.769 0.00 0.00 0.00 3.67
2908 3255 7.759489 AGCACTAAACTGATTTTTCATACCA 57.241 32.000 0.00 0.00 0.00 3.25
2915 3262 8.817100 GCAAGTTTTAGCACTAAACTGATTTTT 58.183 29.630 10.38 0.00 35.05 1.94
2916 3263 7.167468 CGCAAGTTTTAGCACTAAACTGATTTT 59.833 33.333 10.38 0.00 35.05 1.82
2917 3264 6.636850 CGCAAGTTTTAGCACTAAACTGATTT 59.363 34.615 10.38 0.00 35.05 2.17
2918 3265 6.142817 CGCAAGTTTTAGCACTAAACTGATT 58.857 36.000 10.38 0.00 35.05 2.57
2919 3266 5.334879 CCGCAAGTTTTAGCACTAAACTGAT 60.335 40.000 10.38 0.00 35.05 2.90
2920 3267 4.024387 CCGCAAGTTTTAGCACTAAACTGA 60.024 41.667 10.38 0.00 35.05 3.41
2921 3268 4.219033 CCGCAAGTTTTAGCACTAAACTG 58.781 43.478 10.38 2.99 35.05 3.16
2922 3269 3.881089 ACCGCAAGTTTTAGCACTAAACT 59.119 39.130 2.36 5.38 35.05 2.66
2923 3270 4.219143 ACCGCAAGTTTTAGCACTAAAC 57.781 40.909 2.36 0.00 35.05 2.01
2924 3271 6.649973 TGTATACCGCAAGTTTTAGCACTAAA 59.350 34.615 0.00 0.00 33.63 1.85
2925 3272 6.164876 TGTATACCGCAAGTTTTAGCACTAA 58.835 36.000 0.00 0.00 0.00 2.24
2926 3273 5.722263 TGTATACCGCAAGTTTTAGCACTA 58.278 37.500 0.00 0.00 0.00 2.74
2927 3274 4.571919 TGTATACCGCAAGTTTTAGCACT 58.428 39.130 0.00 0.00 0.00 4.40
2928 3275 4.932268 TGTATACCGCAAGTTTTAGCAC 57.068 40.909 0.00 0.00 0.00 4.40
2929 3276 5.644206 TCAATGTATACCGCAAGTTTTAGCA 59.356 36.000 0.00 0.00 0.00 3.49
2930 3277 6.114221 TCAATGTATACCGCAAGTTTTAGC 57.886 37.500 0.00 0.00 0.00 3.09
2931 3278 7.692291 CAGTTCAATGTATACCGCAAGTTTTAG 59.308 37.037 0.00 0.00 0.00 1.85
2932 3279 7.388224 TCAGTTCAATGTATACCGCAAGTTTTA 59.612 33.333 0.00 0.00 0.00 1.52
2933 3280 6.205853 TCAGTTCAATGTATACCGCAAGTTTT 59.794 34.615 0.00 0.00 0.00 2.43
2934 3281 5.703592 TCAGTTCAATGTATACCGCAAGTTT 59.296 36.000 0.00 0.00 0.00 2.66
2935 3282 5.242434 TCAGTTCAATGTATACCGCAAGTT 58.758 37.500 0.00 0.00 0.00 2.66
2936 3283 4.827692 TCAGTTCAATGTATACCGCAAGT 58.172 39.130 0.00 0.00 0.00 3.16
2937 3284 5.741425 CATCAGTTCAATGTATACCGCAAG 58.259 41.667 0.00 0.00 0.00 4.01
2938 3285 4.035091 GCATCAGTTCAATGTATACCGCAA 59.965 41.667 0.00 0.00 0.00 4.85
2939 3286 3.559655 GCATCAGTTCAATGTATACCGCA 59.440 43.478 0.00 0.00 0.00 5.69
2940 3287 3.058914 GGCATCAGTTCAATGTATACCGC 60.059 47.826 0.00 0.00 0.00 5.68
2941 3288 4.126437 TGGCATCAGTTCAATGTATACCG 58.874 43.478 0.00 0.00 0.00 4.02
2942 3289 7.445402 AGTTATGGCATCAGTTCAATGTATACC 59.555 37.037 1.65 0.00 0.00 2.73
2943 3290 8.383318 AGTTATGGCATCAGTTCAATGTATAC 57.617 34.615 1.65 0.00 0.00 1.47
2944 3291 8.839343 CAAGTTATGGCATCAGTTCAATGTATA 58.161 33.333 1.65 0.00 0.00 1.47
2945 3292 7.201848 CCAAGTTATGGCATCAGTTCAATGTAT 60.202 37.037 1.65 0.00 43.80 2.29
2946 3293 6.095300 CCAAGTTATGGCATCAGTTCAATGTA 59.905 38.462 1.65 0.00 43.80 2.29
2947 3294 5.105635 CCAAGTTATGGCATCAGTTCAATGT 60.106 40.000 1.65 0.00 43.80 2.71
2948 3295 5.345702 CCAAGTTATGGCATCAGTTCAATG 58.654 41.667 1.65 0.00 43.80 2.82
2949 3296 5.587388 CCAAGTTATGGCATCAGTTCAAT 57.413 39.130 1.65 0.00 43.80 2.57
2962 3309 5.545658 ATGTACGTCAAAGCCAAGTTATG 57.454 39.130 0.00 0.00 0.00 1.90
2963 3310 7.168637 CGTATATGTACGTCAAAGCCAAGTTAT 59.831 37.037 13.29 0.00 46.51 1.89
2964 3311 6.473131 CGTATATGTACGTCAAAGCCAAGTTA 59.527 38.462 13.29 0.00 46.51 2.24
2965 3312 5.290158 CGTATATGTACGTCAAAGCCAAGTT 59.710 40.000 13.29 0.00 46.51 2.66
2966 3313 4.802039 CGTATATGTACGTCAAAGCCAAGT 59.198 41.667 13.29 0.00 46.51 3.16
2967 3314 5.311016 CGTATATGTACGTCAAAGCCAAG 57.689 43.478 13.29 0.00 46.51 3.61
2991 3338 8.803201 TTGTTCGTATAAAAATGTGATTTGCA 57.197 26.923 0.00 0.00 31.77 4.08
2992 3339 9.123709 TCTTGTTCGTATAAAAATGTGATTTGC 57.876 29.630 0.00 0.00 31.77 3.68
2995 3342 9.289303 GCATCTTGTTCGTATAAAAATGTGATT 57.711 29.630 0.00 0.00 0.00 2.57
2996 3343 8.677300 AGCATCTTGTTCGTATAAAAATGTGAT 58.323 29.630 0.00 0.00 0.00 3.06
2997 3344 7.962373 CAGCATCTTGTTCGTATAAAAATGTGA 59.038 33.333 0.00 0.00 0.00 3.58
2998 3345 7.962373 TCAGCATCTTGTTCGTATAAAAATGTG 59.038 33.333 0.00 0.00 0.00 3.21
2999 3346 8.039603 TCAGCATCTTGTTCGTATAAAAATGT 57.960 30.769 0.00 0.00 0.00 2.71
3000 3347 9.507280 AATCAGCATCTTGTTCGTATAAAAATG 57.493 29.630 0.00 0.00 0.00 2.32
3003 3350 8.826710 CCTAATCAGCATCTTGTTCGTATAAAA 58.173 33.333 0.00 0.00 0.00 1.52
3004 3351 7.985184 ACCTAATCAGCATCTTGTTCGTATAAA 59.015 33.333 0.00 0.00 0.00 1.40
3005 3352 7.497595 ACCTAATCAGCATCTTGTTCGTATAA 58.502 34.615 0.00 0.00 0.00 0.98
3006 3353 7.050970 ACCTAATCAGCATCTTGTTCGTATA 57.949 36.000 0.00 0.00 0.00 1.47
3007 3354 5.918608 ACCTAATCAGCATCTTGTTCGTAT 58.081 37.500 0.00 0.00 0.00 3.06
3008 3355 5.339008 ACCTAATCAGCATCTTGTTCGTA 57.661 39.130 0.00 0.00 0.00 3.43
3009 3356 4.207891 ACCTAATCAGCATCTTGTTCGT 57.792 40.909 0.00 0.00 0.00 3.85
3010 3357 4.207224 CGTACCTAATCAGCATCTTGTTCG 59.793 45.833 0.00 0.00 0.00 3.95
3011 3358 4.025647 GCGTACCTAATCAGCATCTTGTTC 60.026 45.833 0.00 0.00 0.00 3.18
3012 3359 3.871594 GCGTACCTAATCAGCATCTTGTT 59.128 43.478 0.00 0.00 0.00 2.83
3013 3360 3.458189 GCGTACCTAATCAGCATCTTGT 58.542 45.455 0.00 0.00 0.00 3.16
3014 3361 2.802816 GGCGTACCTAATCAGCATCTTG 59.197 50.000 0.00 0.00 0.00 3.02
3015 3362 2.434336 TGGCGTACCTAATCAGCATCTT 59.566 45.455 0.00 0.00 36.63 2.40
3016 3363 2.039418 TGGCGTACCTAATCAGCATCT 58.961 47.619 0.00 0.00 36.63 2.90
3017 3364 2.526304 TGGCGTACCTAATCAGCATC 57.474 50.000 0.00 0.00 36.63 3.91
3018 3365 2.561569 GTTGGCGTACCTAATCAGCAT 58.438 47.619 0.00 0.00 36.63 3.79
3019 3366 1.737696 CGTTGGCGTACCTAATCAGCA 60.738 52.381 0.00 0.00 36.63 4.41
3020 3367 0.928229 CGTTGGCGTACCTAATCAGC 59.072 55.000 0.00 0.00 36.63 4.26
3042 3389 4.687215 TGACAGCAGGCTCCGTGC 62.687 66.667 1.98 1.98 41.54 5.34
3043 3390 2.433838 CTGACAGCAGGCTCCGTG 60.434 66.667 0.00 0.00 38.51 4.94
3044 3391 4.385405 GCTGACAGCAGGCTCCGT 62.385 66.667 22.62 0.00 41.89 4.69
3046 3393 4.074526 TCGCTGACAGCAGGCTCC 62.075 66.667 26.32 0.00 42.58 4.70
3047 3394 1.938657 TAGTCGCTGACAGCAGGCTC 61.939 60.000 26.32 11.25 42.58 4.70
3048 3395 1.943116 CTAGTCGCTGACAGCAGGCT 61.943 60.000 26.32 24.45 42.58 4.58
3049 3396 1.518133 CTAGTCGCTGACAGCAGGC 60.518 63.158 26.32 19.41 42.58 4.85
3050 3397 1.518133 GCTAGTCGCTGACAGCAGG 60.518 63.158 26.32 11.78 42.58 4.85
3051 3398 1.871345 CGCTAGTCGCTGACAGCAG 60.871 63.158 26.32 16.72 42.58 4.24
3052 3399 2.179267 CGCTAGTCGCTGACAGCA 59.821 61.111 26.32 11.38 42.58 4.41
3053 3400 2.580867 CCGCTAGTCGCTGACAGC 60.581 66.667 17.84 17.84 38.02 4.40
3054 3401 2.580867 GCCGCTAGTCGCTGACAG 60.581 66.667 10.52 0.00 34.60 3.51
3055 3402 1.381165 TATGCCGCTAGTCGCTGACA 61.381 55.000 10.52 0.60 34.60 3.58
3056 3403 0.661780 CTATGCCGCTAGTCGCTGAC 60.662 60.000 5.04 1.15 36.73 3.51
3057 3404 1.101635 ACTATGCCGCTAGTCGCTGA 61.102 55.000 5.04 0.00 36.73 4.26
3058 3405 0.936764 CACTATGCCGCTAGTCGCTG 60.937 60.000 5.04 0.00 36.73 5.18
3059 3406 1.360551 CACTATGCCGCTAGTCGCT 59.639 57.895 5.04 0.00 36.73 4.93
3060 3407 1.661821 CCACTATGCCGCTAGTCGC 60.662 63.158 0.00 0.00 36.73 5.19
3061 3408 0.317938 GTCCACTATGCCGCTAGTCG 60.318 60.000 0.00 0.00 38.08 4.18
3062 3409 0.317938 CGTCCACTATGCCGCTAGTC 60.318 60.000 0.00 0.00 29.41 2.59
3063 3410 1.035932 ACGTCCACTATGCCGCTAGT 61.036 55.000 0.00 0.00 32.10 2.57
3064 3411 0.595053 CACGTCCACTATGCCGCTAG 60.595 60.000 0.00 0.00 0.00 3.42
3065 3412 1.317431 ACACGTCCACTATGCCGCTA 61.317 55.000 0.00 0.00 0.00 4.26
3066 3413 2.184322 CACGTCCACTATGCCGCT 59.816 61.111 0.00 0.00 0.00 5.52
3067 3414 2.125673 ACACGTCCACTATGCCGC 60.126 61.111 0.00 0.00 0.00 6.53
3068 3415 1.809619 CCACACGTCCACTATGCCG 60.810 63.158 0.00 0.00 0.00 5.69
3069 3416 2.106683 GCCACACGTCCACTATGCC 61.107 63.158 0.00 0.00 0.00 4.40
3070 3417 2.106683 GGCCACACGTCCACTATGC 61.107 63.158 0.00 0.00 0.00 3.14
3071 3418 0.740868 CAGGCCACACGTCCACTATG 60.741 60.000 5.01 0.00 0.00 2.23
3072 3419 1.596934 CAGGCCACACGTCCACTAT 59.403 57.895 5.01 0.00 0.00 2.12
3073 3420 3.056458 CAGGCCACACGTCCACTA 58.944 61.111 5.01 0.00 0.00 2.74
3074 3421 4.626081 GCAGGCCACACGTCCACT 62.626 66.667 5.01 0.00 0.00 4.00
3075 3422 4.626081 AGCAGGCCACACGTCCAC 62.626 66.667 5.01 0.00 0.00 4.02
3076 3423 2.902423 AAAAGCAGGCCACACGTCCA 62.902 55.000 5.01 0.00 0.00 4.02
3077 3424 1.734388 AAAAAGCAGGCCACACGTCC 61.734 55.000 5.01 0.00 0.00 4.79
3078 3425 1.733526 AAAAAGCAGGCCACACGTC 59.266 52.632 5.01 0.00 0.00 4.34
3079 3426 3.933515 AAAAAGCAGGCCACACGT 58.066 50.000 5.01 0.00 0.00 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.