Multiple sequence alignment - TraesCS7B01G327500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G327500 chr7B 100.000 4091 0 0 1 4091 581398079 581393989 0.000000e+00 7555.0
1 TraesCS7B01G327500 chr7B 85.475 179 22 4 2395 2571 580885296 580885120 2.510000e-42 183.0
2 TraesCS7B01G327500 chr7B 80.625 160 29 2 2693 2851 451148349 451148507 5.550000e-24 122.0
3 TraesCS7B01G327500 chr7B 96.226 53 2 0 257 309 740579230 740579282 2.030000e-13 87.9
4 TraesCS7B01G327500 chr7B 94.340 53 3 0 257 309 740565674 740565726 9.420000e-12 82.4
5 TraesCS7B01G327500 chr7B 94.340 53 3 0 257 309 740658941 740658993 9.420000e-12 82.4
6 TraesCS7B01G327500 chr7B 92.453 53 4 0 257 309 740209165 740209217 4.390000e-10 76.8
7 TraesCS7B01G327500 chr7D 92.252 1381 57 23 1952 3309 538895746 538894393 0.000000e+00 1912.0
8 TraesCS7B01G327500 chr7D 86.835 1466 94 38 360 1770 538897266 538895845 0.000000e+00 1546.0
9 TraesCS7B01G327500 chr7D 86.854 677 83 5 3415 4091 5930930 5930260 0.000000e+00 752.0
10 TraesCS7B01G327500 chr7D 75.676 481 87 23 2395 2867 538818445 538817987 3.200000e-51 213.0
11 TraesCS7B01G327500 chr7D 74.948 479 92 24 2395 2860 538140456 538139993 1.160000e-45 195.0
12 TraesCS7B01G327500 chr7D 86.503 163 20 2 2395 2556 538662455 538662616 1.170000e-40 178.0
13 TraesCS7B01G327500 chr7D 80.625 160 29 2 2693 2851 433724664 433724822 5.550000e-24 122.0
14 TraesCS7B01G327500 chr7D 96.154 52 2 0 1880 1931 538895783 538895732 7.290000e-13 86.1
15 TraesCS7B01G327500 chr7D 94.444 54 2 1 257 309 635511487 635511434 9.420000e-12 82.4
16 TraesCS7B01G327500 chr7A 89.228 1541 106 31 414 1930 620414417 620412913 0.000000e+00 1871.0
17 TraesCS7B01G327500 chr7A 90.538 1300 59 35 1952 3200 620412926 620411640 0.000000e+00 1661.0
18 TraesCS7B01G327500 chr7A 97.685 216 3 1 4 217 588267838 588267623 1.800000e-98 370.0
19 TraesCS7B01G327500 chr7A 98.551 207 3 0 4 210 588275502 588275296 2.320000e-97 366.0
20 TraesCS7B01G327500 chr7A 98.870 177 2 0 4 180 588281445 588281269 2.370000e-82 316.0
21 TraesCS7B01G327500 chr7A 75.468 481 94 22 2395 2867 620370835 620370371 3.200000e-51 213.0
22 TraesCS7B01G327500 chr7A 75.676 481 87 25 2395 2867 620487468 620487926 3.200000e-51 213.0
23 TraesCS7B01G327500 chr7A 85.393 178 24 2 2395 2571 619576284 619576108 2.510000e-42 183.0
24 TraesCS7B01G327500 chr7A 81.250 160 28 2 2693 2851 484395952 484396110 1.190000e-25 128.0
25 TraesCS7B01G327500 chr7A 92.453 53 4 0 257 309 730510795 730510847 4.390000e-10 76.8
26 TraesCS7B01G327500 chr7A 97.368 38 1 0 379 416 620414766 620414729 9.490000e-07 65.8
27 TraesCS7B01G327500 chr2D 87.896 694 74 8 3399 4091 72215058 72214374 0.000000e+00 808.0
28 TraesCS7B01G327500 chr2D 74.153 472 95 24 2396 2853 544259893 544260351 1.960000e-38 171.0
29 TraesCS7B01G327500 chr4D 87.213 696 75 11 3399 4091 488518207 488518891 0.000000e+00 780.0
30 TraesCS7B01G327500 chr4D 85.426 693 95 5 3399 4090 450489934 450489247 0.000000e+00 715.0
31 TraesCS7B01G327500 chr4A 87.032 694 79 8 3400 4089 291975229 291974543 0.000000e+00 773.0
32 TraesCS7B01G327500 chr1A 86.147 693 91 4 3399 4091 574733875 574733188 0.000000e+00 743.0
33 TraesCS7B01G327500 chr5D 86.167 694 86 8 3399 4091 396415879 396415195 0.000000e+00 741.0
34 TraesCS7B01G327500 chr3D 85.899 695 92 5 3398 4091 528967146 528966457 0.000000e+00 736.0
35 TraesCS7B01G327500 chr3D 87.923 207 25 0 17 223 518745931 518745725 1.140000e-60 244.0
36 TraesCS7B01G327500 chr1D 86.023 694 87 7 3404 4091 45263310 45263999 0.000000e+00 736.0
37 TraesCS7B01G327500 chr5A 99.528 212 1 0 1 212 400509261 400509472 1.780000e-103 387.0
38 TraesCS7B01G327500 chr5A 95.261 211 10 0 1 211 644924037 644923827 6.550000e-88 335.0
39 TraesCS7B01G327500 chr2B 82.589 448 34 27 918 1362 633601735 633602141 5.030000e-94 355.0
40 TraesCS7B01G327500 chr2B 95.045 222 8 3 1141 1362 391481484 391481702 3.030000e-91 346.0
41 TraesCS7B01G327500 chr2B 85.500 200 21 4 918 1112 391481295 391481491 6.930000e-48 202.0
42 TraesCS7B01G327500 chr2B 74.468 470 97 21 2396 2853 649670209 649670667 9.030000e-42 182.0
43 TraesCS7B01G327500 chr5B 83.418 392 23 28 918 1305 120539017 120538664 3.940000e-85 326.0
44 TraesCS7B01G327500 chr5B 81.099 455 35 33 918 1362 246493254 246492841 2.370000e-82 316.0
45 TraesCS7B01G327500 chr5B 92.925 212 15 0 1 212 17922587 17922376 3.970000e-80 309.0
46 TraesCS7B01G327500 chr6A 89.340 197 21 0 17 213 508355413 508355609 8.780000e-62 248.0
47 TraesCS7B01G327500 chr6A 91.429 175 15 0 37 211 474745912 474745738 1.470000e-59 241.0
48 TraesCS7B01G327500 chr2A 74.423 477 92 27 2396 2853 686797570 686798035 1.170000e-40 178.0
49 TraesCS7B01G327500 chr6D 88.043 92 9 2 218 309 329072437 329072348 1.550000e-19 108.0
50 TraesCS7B01G327500 chr3B 82.645 121 5 4 218 331 671567475 671567364 4.350000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G327500 chr7B 581393989 581398079 4090 True 7555.000000 7555 100.000 1 4091 1 chr7B.!!$R2 4090
1 TraesCS7B01G327500 chr7D 538894393 538897266 2873 True 1181.366667 1912 91.747 360 3309 3 chr7D.!!$R5 2949
2 TraesCS7B01G327500 chr7D 5930260 5930930 670 True 752.000000 752 86.854 3415 4091 1 chr7D.!!$R1 676
3 TraesCS7B01G327500 chr7A 620411640 620414766 3126 True 1199.266667 1871 92.378 379 3200 3 chr7A.!!$R6 2821
4 TraesCS7B01G327500 chr2D 72214374 72215058 684 True 808.000000 808 87.896 3399 4091 1 chr2D.!!$R1 692
5 TraesCS7B01G327500 chr4D 488518207 488518891 684 False 780.000000 780 87.213 3399 4091 1 chr4D.!!$F1 692
6 TraesCS7B01G327500 chr4D 450489247 450489934 687 True 715.000000 715 85.426 3399 4090 1 chr4D.!!$R1 691
7 TraesCS7B01G327500 chr4A 291974543 291975229 686 True 773.000000 773 87.032 3400 4089 1 chr4A.!!$R1 689
8 TraesCS7B01G327500 chr1A 574733188 574733875 687 True 743.000000 743 86.147 3399 4091 1 chr1A.!!$R1 692
9 TraesCS7B01G327500 chr5D 396415195 396415879 684 True 741.000000 741 86.167 3399 4091 1 chr5D.!!$R1 692
10 TraesCS7B01G327500 chr3D 528966457 528967146 689 True 736.000000 736 85.899 3398 4091 1 chr3D.!!$R2 693
11 TraesCS7B01G327500 chr1D 45263310 45263999 689 False 736.000000 736 86.023 3404 4091 1 chr1D.!!$F1 687

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
463 782 0.036483 TAATGCTTGCCACAGCTCGA 60.036 50.0 1.78 0.00 40.79 4.04 F
1589 1965 0.166814 GTGTGGATTCAGAAGCACGC 59.833 55.0 0.00 0.44 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1591 1967 0.107165 AACCTCCCAATCGGCTAAGC 60.107 55.0 0.0 0.0 0.0 3.09 R
3304 3750 0.032267 GTGGGCTCGGTGATAGTAGC 59.968 60.0 0.0 0.0 0.0 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.241493 TAGTGGGAAACGGCATGTG 57.759 52.632 0.00 0.00 0.00 3.21
19 20 0.322098 TAGTGGGAAACGGCATGTGG 60.322 55.000 0.00 0.00 0.00 4.17
20 21 1.602323 GTGGGAAACGGCATGTGGA 60.602 57.895 0.00 0.00 0.00 4.02
21 22 1.151679 TGGGAAACGGCATGTGGAA 59.848 52.632 0.00 0.00 0.00 3.53
22 23 0.251564 TGGGAAACGGCATGTGGAAT 60.252 50.000 0.00 0.00 0.00 3.01
23 24 1.004862 TGGGAAACGGCATGTGGAATA 59.995 47.619 0.00 0.00 0.00 1.75
24 25 2.306847 GGGAAACGGCATGTGGAATAT 58.693 47.619 0.00 0.00 0.00 1.28
25 26 2.693074 GGGAAACGGCATGTGGAATATT 59.307 45.455 0.00 0.00 0.00 1.28
26 27 3.243401 GGGAAACGGCATGTGGAATATTC 60.243 47.826 6.93 6.93 0.00 1.75
38 39 2.711542 GGAATATTCCTATGCGGGTGG 58.288 52.381 24.74 0.00 44.11 4.61
39 40 2.304761 GGAATATTCCTATGCGGGTGGA 59.695 50.000 24.74 0.00 44.11 4.02
40 41 3.600388 GAATATTCCTATGCGGGTGGAG 58.400 50.000 3.92 0.00 0.00 3.86
41 42 2.097110 TATTCCTATGCGGGTGGAGT 57.903 50.000 0.00 0.00 0.00 3.85
42 43 2.097110 ATTCCTATGCGGGTGGAGTA 57.903 50.000 0.00 0.00 0.00 2.59
43 44 1.117150 TTCCTATGCGGGTGGAGTAC 58.883 55.000 0.00 0.00 0.00 2.73
44 45 1.105167 TCCTATGCGGGTGGAGTACG 61.105 60.000 0.00 0.00 0.00 3.67
45 46 1.362717 CTATGCGGGTGGAGTACGG 59.637 63.158 0.00 0.00 0.00 4.02
46 47 1.380246 TATGCGGGTGGAGTACGGT 60.380 57.895 0.00 0.00 0.00 4.83
47 48 1.386525 TATGCGGGTGGAGTACGGTC 61.387 60.000 0.00 0.00 0.00 4.79
48 49 3.376078 GCGGGTGGAGTACGGTCA 61.376 66.667 0.00 0.00 0.00 4.02
49 50 2.882876 CGGGTGGAGTACGGTCAG 59.117 66.667 0.00 0.00 0.00 3.51
50 51 1.975407 CGGGTGGAGTACGGTCAGT 60.975 63.158 0.00 0.00 0.00 3.41
51 52 1.888736 GGGTGGAGTACGGTCAGTC 59.111 63.158 0.00 0.00 0.00 3.51
52 53 0.896940 GGGTGGAGTACGGTCAGTCA 60.897 60.000 0.00 0.00 0.00 3.41
53 54 1.183549 GGTGGAGTACGGTCAGTCAT 58.816 55.000 0.00 0.00 0.00 3.06
54 55 1.549170 GGTGGAGTACGGTCAGTCATT 59.451 52.381 0.00 0.00 0.00 2.57
55 56 2.416972 GGTGGAGTACGGTCAGTCATTC 60.417 54.545 0.00 0.00 0.00 2.67
56 57 2.492484 GTGGAGTACGGTCAGTCATTCT 59.508 50.000 0.00 0.00 0.00 2.40
57 58 3.693085 GTGGAGTACGGTCAGTCATTCTA 59.307 47.826 0.00 0.00 0.00 2.10
58 59 4.157289 GTGGAGTACGGTCAGTCATTCTAA 59.843 45.833 0.00 0.00 0.00 2.10
59 60 4.768448 TGGAGTACGGTCAGTCATTCTAAA 59.232 41.667 0.00 0.00 0.00 1.85
60 61 5.421056 TGGAGTACGGTCAGTCATTCTAAAT 59.579 40.000 0.00 0.00 0.00 1.40
61 62 6.070995 TGGAGTACGGTCAGTCATTCTAAATT 60.071 38.462 0.00 0.00 0.00 1.82
62 63 6.255887 GGAGTACGGTCAGTCATTCTAAATTG 59.744 42.308 0.00 0.00 0.00 2.32
63 64 4.946784 ACGGTCAGTCATTCTAAATTGC 57.053 40.909 0.00 0.00 0.00 3.56
64 65 4.579869 ACGGTCAGTCATTCTAAATTGCT 58.420 39.130 0.00 0.00 0.00 3.91
65 66 5.730550 ACGGTCAGTCATTCTAAATTGCTA 58.269 37.500 0.00 0.00 0.00 3.49
66 67 6.170506 ACGGTCAGTCATTCTAAATTGCTAA 58.829 36.000 0.00 0.00 0.00 3.09
67 68 6.092259 ACGGTCAGTCATTCTAAATTGCTAAC 59.908 38.462 0.00 0.00 0.00 2.34
68 69 6.313905 CGGTCAGTCATTCTAAATTGCTAACT 59.686 38.462 0.00 0.00 0.00 2.24
69 70 7.491372 CGGTCAGTCATTCTAAATTGCTAACTA 59.509 37.037 0.00 0.00 0.00 2.24
70 71 8.604890 GGTCAGTCATTCTAAATTGCTAACTAC 58.395 37.037 0.00 0.00 0.00 2.73
71 72 9.151471 GTCAGTCATTCTAAATTGCTAACTACA 57.849 33.333 0.00 0.00 0.00 2.74
72 73 9.151471 TCAGTCATTCTAAATTGCTAACTACAC 57.849 33.333 0.00 0.00 0.00 2.90
73 74 8.935844 CAGTCATTCTAAATTGCTAACTACACA 58.064 33.333 0.00 0.00 0.00 3.72
74 75 8.936864 AGTCATTCTAAATTGCTAACTACACAC 58.063 33.333 0.00 0.00 0.00 3.82
75 76 8.717821 GTCATTCTAAATTGCTAACTACACACA 58.282 33.333 0.00 0.00 0.00 3.72
76 77 9.448438 TCATTCTAAATTGCTAACTACACACAT 57.552 29.630 0.00 0.00 0.00 3.21
77 78 9.494479 CATTCTAAATTGCTAACTACACACATG 57.506 33.333 0.00 0.00 0.00 3.21
78 79 8.840833 TTCTAAATTGCTAACTACACACATGA 57.159 30.769 0.00 0.00 0.00 3.07
79 80 8.251750 TCTAAATTGCTAACTACACACATGAC 57.748 34.615 0.00 0.00 0.00 3.06
80 81 8.094548 TCTAAATTGCTAACTACACACATGACT 58.905 33.333 0.00 0.00 0.00 3.41
81 82 6.727824 AATTGCTAACTACACACATGACTC 57.272 37.500 0.00 0.00 0.00 3.36
82 83 3.833442 TGCTAACTACACACATGACTCG 58.167 45.455 0.00 0.00 0.00 4.18
83 84 3.179830 GCTAACTACACACATGACTCGG 58.820 50.000 0.00 0.00 0.00 4.63
84 85 2.743636 AACTACACACATGACTCGGG 57.256 50.000 0.00 0.00 0.00 5.14
85 86 1.919240 ACTACACACATGACTCGGGA 58.081 50.000 0.00 0.00 0.00 5.14
86 87 2.457598 ACTACACACATGACTCGGGAT 58.542 47.619 0.00 0.00 0.00 3.85
87 88 2.832129 ACTACACACATGACTCGGGATT 59.168 45.455 0.00 0.00 0.00 3.01
88 89 4.021229 ACTACACACATGACTCGGGATTA 58.979 43.478 0.00 0.00 0.00 1.75
89 90 3.973206 ACACACATGACTCGGGATTAA 57.027 42.857 0.00 0.00 0.00 1.40
90 91 3.861840 ACACACATGACTCGGGATTAAG 58.138 45.455 0.00 0.00 0.00 1.85
91 92 3.260884 ACACACATGACTCGGGATTAAGT 59.739 43.478 0.00 0.00 0.00 2.24
92 93 4.253685 CACACATGACTCGGGATTAAGTT 58.746 43.478 0.00 0.00 0.00 2.66
93 94 5.046878 ACACACATGACTCGGGATTAAGTTA 60.047 40.000 0.00 0.00 0.00 2.24
94 95 5.872617 CACACATGACTCGGGATTAAGTTAA 59.127 40.000 0.00 0.00 0.00 2.01
95 96 6.538742 CACACATGACTCGGGATTAAGTTAAT 59.461 38.462 7.87 7.87 0.00 1.40
96 97 6.761714 ACACATGACTCGGGATTAAGTTAATC 59.238 38.462 22.36 22.36 42.94 1.75
97 98 6.761242 CACATGACTCGGGATTAAGTTAATCA 59.239 38.462 28.40 14.14 44.92 2.57
98 99 7.442364 CACATGACTCGGGATTAAGTTAATCAT 59.558 37.037 28.40 15.46 44.92 2.45
99 100 8.647796 ACATGACTCGGGATTAAGTTAATCATA 58.352 33.333 28.40 16.20 44.92 2.15
100 101 9.489084 CATGACTCGGGATTAAGTTAATCATAA 57.511 33.333 28.40 15.93 44.92 1.90
101 102 8.882415 TGACTCGGGATTAAGTTAATCATAAC 57.118 34.615 28.40 17.55 44.92 1.89
102 103 7.929785 TGACTCGGGATTAAGTTAATCATAACC 59.070 37.037 28.40 20.98 44.92 2.85
103 104 7.798071 ACTCGGGATTAAGTTAATCATAACCA 58.202 34.615 28.40 14.35 44.92 3.67
104 105 8.437575 ACTCGGGATTAAGTTAATCATAACCAT 58.562 33.333 28.40 11.83 44.92 3.55
105 106 9.284968 CTCGGGATTAAGTTAATCATAACCATT 57.715 33.333 28.40 0.00 44.92 3.16
123 124 9.936329 ATAACCATTAGATTTTATTCAGTGGGT 57.064 29.630 0.00 0.00 0.00 4.51
124 125 8.664669 AACCATTAGATTTTATTCAGTGGGTT 57.335 30.769 0.00 0.00 0.00 4.11
125 126 8.664669 ACCATTAGATTTTATTCAGTGGGTTT 57.335 30.769 0.00 0.00 0.00 3.27
126 127 9.762381 ACCATTAGATTTTATTCAGTGGGTTTA 57.238 29.630 0.00 0.00 0.00 2.01
133 134 9.952188 GATTTTATTCAGTGGGTTTAATCTAGC 57.048 33.333 0.00 0.00 0.00 3.42
134 135 7.548196 TTTATTCAGTGGGTTTAATCTAGCG 57.452 36.000 0.00 0.00 0.00 4.26
135 136 3.536956 TCAGTGGGTTTAATCTAGCGG 57.463 47.619 0.00 0.00 0.00 5.52
136 137 2.835764 TCAGTGGGTTTAATCTAGCGGT 59.164 45.455 0.00 0.00 0.00 5.68
137 138 2.936498 CAGTGGGTTTAATCTAGCGGTG 59.064 50.000 0.00 0.00 0.00 4.94
138 139 1.669265 GTGGGTTTAATCTAGCGGTGC 59.331 52.381 0.00 0.00 0.00 5.01
139 140 1.557832 TGGGTTTAATCTAGCGGTGCT 59.442 47.619 0.00 0.00 43.41 4.40
140 141 2.767394 TGGGTTTAATCTAGCGGTGCTA 59.233 45.455 0.00 0.00 40.44 3.49
141 142 3.198200 TGGGTTTAATCTAGCGGTGCTAA 59.802 43.478 0.00 0.00 40.82 3.09
142 143 4.141574 TGGGTTTAATCTAGCGGTGCTAAT 60.142 41.667 0.00 0.00 40.82 1.73
143 144 4.451435 GGGTTTAATCTAGCGGTGCTAATC 59.549 45.833 0.00 0.00 40.82 1.75
144 145 5.054477 GGTTTAATCTAGCGGTGCTAATCA 58.946 41.667 0.00 0.00 40.82 2.57
145 146 5.526111 GGTTTAATCTAGCGGTGCTAATCAA 59.474 40.000 0.00 0.00 40.82 2.57
146 147 6.204882 GGTTTAATCTAGCGGTGCTAATCAAT 59.795 38.462 0.00 0.00 40.82 2.57
147 148 7.291567 GTTTAATCTAGCGGTGCTAATCAATC 58.708 38.462 0.00 0.00 40.82 2.67
148 149 4.881019 ATCTAGCGGTGCTAATCAATCT 57.119 40.909 0.00 0.00 40.82 2.40
149 150 3.982475 TCTAGCGGTGCTAATCAATCTG 58.018 45.455 0.00 0.00 40.82 2.90
150 151 1.959042 AGCGGTGCTAATCAATCTGG 58.041 50.000 0.00 0.00 36.99 3.86
151 152 0.947244 GCGGTGCTAATCAATCTGGG 59.053 55.000 0.00 0.00 0.00 4.45
152 153 1.747206 GCGGTGCTAATCAATCTGGGT 60.747 52.381 0.00 0.00 0.00 4.51
153 154 2.484770 GCGGTGCTAATCAATCTGGGTA 60.485 50.000 0.00 0.00 0.00 3.69
154 155 3.131396 CGGTGCTAATCAATCTGGGTAC 58.869 50.000 0.00 0.00 0.00 3.34
155 156 3.431626 CGGTGCTAATCAATCTGGGTACA 60.432 47.826 0.00 0.00 0.00 2.90
156 157 4.523083 GGTGCTAATCAATCTGGGTACAA 58.477 43.478 0.00 0.00 0.00 2.41
157 158 5.133221 GGTGCTAATCAATCTGGGTACAAT 58.867 41.667 0.00 0.00 0.00 2.71
158 159 5.594317 GGTGCTAATCAATCTGGGTACAATT 59.406 40.000 0.00 0.00 0.00 2.32
159 160 6.460123 GGTGCTAATCAATCTGGGTACAATTG 60.460 42.308 3.24 3.24 31.87 2.32
160 161 6.095440 GTGCTAATCAATCTGGGTACAATTGT 59.905 38.462 16.68 16.68 32.20 2.71
161 162 6.663093 TGCTAATCAATCTGGGTACAATTGTT 59.337 34.615 17.78 0.95 32.20 2.83
162 163 6.974622 GCTAATCAATCTGGGTACAATTGTTG 59.025 38.462 17.78 6.35 32.20 3.33
164 165 5.703978 TCAATCTGGGTACAATTGTTGTG 57.296 39.130 17.78 3.69 45.03 3.33
165 166 5.136828 TCAATCTGGGTACAATTGTTGTGT 58.863 37.500 17.78 0.00 45.03 3.72
166 167 5.009510 TCAATCTGGGTACAATTGTTGTGTG 59.990 40.000 17.78 5.43 45.03 3.82
167 168 3.218453 TCTGGGTACAATTGTTGTGTGG 58.782 45.455 17.78 3.89 45.03 4.17
168 169 1.683917 TGGGTACAATTGTTGTGTGGC 59.316 47.619 17.78 0.00 45.03 5.01
169 170 1.335506 GGGTACAATTGTTGTGTGGCG 60.336 52.381 17.78 0.00 45.03 5.69
170 171 1.335496 GGTACAATTGTTGTGTGGCGT 59.665 47.619 17.78 0.00 45.03 5.68
171 172 2.223618 GGTACAATTGTTGTGTGGCGTT 60.224 45.455 17.78 0.00 45.03 4.84
172 173 3.003482 GGTACAATTGTTGTGTGGCGTTA 59.997 43.478 17.78 0.00 45.03 3.18
173 174 3.784701 ACAATTGTTGTGTGGCGTTAA 57.215 38.095 4.92 0.00 43.48 2.01
174 175 3.701241 ACAATTGTTGTGTGGCGTTAAG 58.299 40.909 4.92 0.00 43.48 1.85
175 176 3.378742 ACAATTGTTGTGTGGCGTTAAGA 59.621 39.130 4.92 0.00 43.48 2.10
176 177 4.142359 ACAATTGTTGTGTGGCGTTAAGAA 60.142 37.500 4.92 0.00 43.48 2.52
177 178 4.640789 ATTGTTGTGTGGCGTTAAGAAA 57.359 36.364 0.00 0.00 0.00 2.52
178 179 3.684103 TGTTGTGTGGCGTTAAGAAAG 57.316 42.857 0.00 0.00 0.00 2.62
179 180 3.271729 TGTTGTGTGGCGTTAAGAAAGA 58.728 40.909 0.00 0.00 0.00 2.52
180 181 3.690139 TGTTGTGTGGCGTTAAGAAAGAA 59.310 39.130 0.00 0.00 0.00 2.52
181 182 4.156190 TGTTGTGTGGCGTTAAGAAAGAAA 59.844 37.500 0.00 0.00 0.00 2.52
182 183 5.163602 TGTTGTGTGGCGTTAAGAAAGAAAT 60.164 36.000 0.00 0.00 0.00 2.17
183 184 5.508200 TGTGTGGCGTTAAGAAAGAAATT 57.492 34.783 0.00 0.00 0.00 1.82
184 185 5.277825 TGTGTGGCGTTAAGAAAGAAATTG 58.722 37.500 0.00 0.00 0.00 2.32
185 186 5.163602 TGTGTGGCGTTAAGAAAGAAATTGT 60.164 36.000 0.00 0.00 0.00 2.71
186 187 5.746721 GTGTGGCGTTAAGAAAGAAATTGTT 59.253 36.000 0.00 0.00 0.00 2.83
187 188 5.974751 TGTGGCGTTAAGAAAGAAATTGTTC 59.025 36.000 0.00 0.00 0.00 3.18
188 189 5.115021 GTGGCGTTAAGAAAGAAATTGTTCG 59.885 40.000 0.00 0.00 38.90 3.95
189 190 5.007823 TGGCGTTAAGAAAGAAATTGTTCGA 59.992 36.000 0.00 0.00 38.90 3.71
190 191 6.084277 GGCGTTAAGAAAGAAATTGTTCGAT 58.916 36.000 0.00 0.00 38.90 3.59
191 192 6.581166 GGCGTTAAGAAAGAAATTGTTCGATT 59.419 34.615 0.00 0.00 38.90 3.34
192 193 7.409343 GGCGTTAAGAAAGAAATTGTTCGATTG 60.409 37.037 0.00 0.00 38.90 2.67
193 194 7.112984 GCGTTAAGAAAGAAATTGTTCGATTGT 59.887 33.333 0.00 0.00 38.90 2.71
194 195 8.953990 CGTTAAGAAAGAAATTGTTCGATTGTT 58.046 29.630 0.00 0.00 38.90 2.83
241 242 8.752005 TTAATCACCTCTCTGATTTTAATGGG 57.248 34.615 0.01 0.00 40.60 4.00
242 243 5.116084 TCACCTCTCTGATTTTAATGGGG 57.884 43.478 0.00 0.00 0.00 4.96
243 244 4.540099 TCACCTCTCTGATTTTAATGGGGT 59.460 41.667 0.00 0.00 0.00 4.95
244 245 4.641989 CACCTCTCTGATTTTAATGGGGTG 59.358 45.833 0.00 0.00 35.34 4.61
245 246 4.210331 CCTCTCTGATTTTAATGGGGTGG 58.790 47.826 0.00 0.00 0.00 4.61
246 247 4.210331 CTCTCTGATTTTAATGGGGTGGG 58.790 47.826 0.00 0.00 0.00 4.61
247 248 2.695147 CTCTGATTTTAATGGGGTGGGC 59.305 50.000 0.00 0.00 0.00 5.36
248 249 1.762370 CTGATTTTAATGGGGTGGGCC 59.238 52.381 0.00 0.00 0.00 5.80
249 250 1.364328 TGATTTTAATGGGGTGGGCCT 59.636 47.619 4.53 0.00 34.45 5.19
250 251 1.762370 GATTTTAATGGGGTGGGCCTG 59.238 52.381 4.53 0.00 34.45 4.85
251 252 0.252467 TTTTAATGGGGTGGGCCTGG 60.252 55.000 4.53 0.00 34.45 4.45
252 253 2.174876 TTTAATGGGGTGGGCCTGGG 62.175 60.000 4.53 0.00 34.45 4.45
253 254 3.605054 TAATGGGGTGGGCCTGGGA 62.605 63.158 4.53 0.00 34.45 4.37
257 258 3.672503 GGGTGGGCCTGGGACATT 61.673 66.667 4.53 0.00 38.20 2.71
258 259 2.313427 GGGTGGGCCTGGGACATTA 61.313 63.158 4.53 0.00 38.20 1.90
259 260 1.655114 GGGTGGGCCTGGGACATTAT 61.655 60.000 4.53 0.00 38.20 1.28
260 261 0.261696 GGTGGGCCTGGGACATTATT 59.738 55.000 4.53 0.00 38.20 1.40
261 262 1.342975 GGTGGGCCTGGGACATTATTT 60.343 52.381 4.53 0.00 38.20 1.40
262 263 1.756538 GTGGGCCTGGGACATTATTTG 59.243 52.381 4.53 0.00 38.20 2.32
263 264 0.752658 GGGCCTGGGACATTATTTGC 59.247 55.000 0.84 0.00 38.20 3.68
264 265 1.689258 GGGCCTGGGACATTATTTGCT 60.689 52.381 0.84 0.00 38.20 3.91
265 266 2.110578 GGCCTGGGACATTATTTGCTT 58.889 47.619 0.00 0.00 38.20 3.91
266 267 2.101415 GGCCTGGGACATTATTTGCTTC 59.899 50.000 0.00 0.00 38.20 3.86
267 268 2.101415 GCCTGGGACATTATTTGCTTCC 59.899 50.000 0.00 0.00 38.20 3.46
268 269 3.364549 CCTGGGACATTATTTGCTTCCA 58.635 45.455 0.00 0.00 38.20 3.53
269 270 3.768757 CCTGGGACATTATTTGCTTCCAA 59.231 43.478 0.00 0.00 38.20 3.53
270 271 4.381932 CCTGGGACATTATTTGCTTCCAAC 60.382 45.833 0.00 0.00 38.20 3.77
271 272 3.513515 TGGGACATTATTTGCTTCCAACC 59.486 43.478 0.00 0.00 0.00 3.77
272 273 3.513515 GGGACATTATTTGCTTCCAACCA 59.486 43.478 0.00 0.00 0.00 3.67
273 274 4.381932 GGGACATTATTTGCTTCCAACCAG 60.382 45.833 0.00 0.00 0.00 4.00
274 275 4.462483 GGACATTATTTGCTTCCAACCAGA 59.538 41.667 0.00 0.00 0.00 3.86
275 276 5.127682 GGACATTATTTGCTTCCAACCAGAT 59.872 40.000 0.00 0.00 0.00 2.90
276 277 6.212888 ACATTATTTGCTTCCAACCAGATC 57.787 37.500 0.00 0.00 0.00 2.75
277 278 5.954150 ACATTATTTGCTTCCAACCAGATCT 59.046 36.000 0.00 0.00 0.00 2.75
278 279 7.118723 ACATTATTTGCTTCCAACCAGATCTA 58.881 34.615 0.00 0.00 0.00 1.98
279 280 7.284034 ACATTATTTGCTTCCAACCAGATCTAG 59.716 37.037 0.00 0.00 0.00 2.43
280 281 2.698855 TGCTTCCAACCAGATCTAGC 57.301 50.000 0.00 0.00 0.00 3.42
281 282 1.210478 TGCTTCCAACCAGATCTAGCC 59.790 52.381 8.54 0.00 0.00 3.93
282 283 1.210478 GCTTCCAACCAGATCTAGCCA 59.790 52.381 0.00 0.00 0.00 4.75
283 284 2.911484 CTTCCAACCAGATCTAGCCAC 58.089 52.381 0.00 0.00 0.00 5.01
284 285 0.824109 TCCAACCAGATCTAGCCACG 59.176 55.000 0.00 0.00 0.00 4.94
285 286 0.537188 CCAACCAGATCTAGCCACGT 59.463 55.000 0.00 0.00 0.00 4.49
286 287 1.645034 CAACCAGATCTAGCCACGTG 58.355 55.000 9.08 9.08 0.00 4.49
287 288 1.204704 CAACCAGATCTAGCCACGTGA 59.795 52.381 19.30 0.00 0.00 4.35
288 289 1.107114 ACCAGATCTAGCCACGTGAG 58.893 55.000 19.30 6.78 0.00 3.51
289 290 0.249238 CCAGATCTAGCCACGTGAGC 60.249 60.000 19.30 18.44 0.00 4.26
290 291 0.743688 CAGATCTAGCCACGTGAGCT 59.256 55.000 27.00 27.00 44.49 4.09
291 292 1.028905 AGATCTAGCCACGTGAGCTC 58.971 55.000 27.45 16.95 41.83 4.09
292 293 0.317436 GATCTAGCCACGTGAGCTCG 60.317 60.000 27.45 22.59 41.83 5.03
293 294 1.032657 ATCTAGCCACGTGAGCTCGT 61.033 55.000 27.45 15.69 45.10 4.18
299 300 3.362262 ACGTGAGCTCGTGCCTAA 58.638 55.556 9.64 0.00 42.56 2.69
300 301 1.213013 ACGTGAGCTCGTGCCTAAG 59.787 57.895 9.64 0.72 42.56 2.18
301 302 1.213013 CGTGAGCTCGTGCCTAAGT 59.787 57.895 9.64 0.00 40.80 2.24
302 303 0.388649 CGTGAGCTCGTGCCTAAGTT 60.389 55.000 9.64 0.00 40.80 2.66
303 304 1.797025 GTGAGCTCGTGCCTAAGTTT 58.203 50.000 9.64 0.00 40.80 2.66
304 305 1.727335 GTGAGCTCGTGCCTAAGTTTC 59.273 52.381 9.64 0.00 40.80 2.78
305 306 0.992802 GAGCTCGTGCCTAAGTTTCG 59.007 55.000 5.73 0.00 40.80 3.46
306 307 0.317479 AGCTCGTGCCTAAGTTTCGT 59.683 50.000 5.73 0.00 40.80 3.85
307 308 1.542915 AGCTCGTGCCTAAGTTTCGTA 59.457 47.619 5.73 0.00 40.80 3.43
308 309 2.029649 AGCTCGTGCCTAAGTTTCGTAA 60.030 45.455 5.73 0.00 40.80 3.18
309 310 2.928116 GCTCGTGCCTAAGTTTCGTAAT 59.072 45.455 0.00 0.00 0.00 1.89
310 311 4.107622 GCTCGTGCCTAAGTTTCGTAATA 58.892 43.478 0.00 0.00 0.00 0.98
311 312 4.027050 GCTCGTGCCTAAGTTTCGTAATAC 60.027 45.833 0.00 0.00 0.00 1.89
312 313 4.097714 TCGTGCCTAAGTTTCGTAATACG 58.902 43.478 6.45 6.45 44.19 3.06
313 314 3.853671 CGTGCCTAAGTTTCGTAATACGT 59.146 43.478 12.78 0.00 43.14 3.57
314 315 5.027737 CGTGCCTAAGTTTCGTAATACGTA 58.972 41.667 12.78 0.00 43.14 3.57
315 316 5.170270 CGTGCCTAAGTTTCGTAATACGTAG 59.830 44.000 12.78 6.57 43.14 3.51
316 317 6.258160 GTGCCTAAGTTTCGTAATACGTAGA 58.742 40.000 12.78 0.00 43.14 2.59
317 318 6.914757 GTGCCTAAGTTTCGTAATACGTAGAT 59.085 38.462 12.78 0.00 43.14 1.98
318 319 6.914215 TGCCTAAGTTTCGTAATACGTAGATG 59.086 38.462 12.78 0.00 43.14 2.90
319 320 6.914757 GCCTAAGTTTCGTAATACGTAGATGT 59.085 38.462 12.78 0.00 43.14 3.06
320 321 8.070171 GCCTAAGTTTCGTAATACGTAGATGTA 58.930 37.037 12.78 0.00 43.14 2.29
321 322 9.591404 CCTAAGTTTCGTAATACGTAGATGTAG 57.409 37.037 12.78 8.40 43.14 2.74
322 323 7.905031 AAGTTTCGTAATACGTAGATGTAGC 57.095 36.000 12.78 0.00 43.14 3.58
323 324 7.019774 AGTTTCGTAATACGTAGATGTAGCA 57.980 36.000 12.78 0.00 43.14 3.49
324 325 7.475015 AGTTTCGTAATACGTAGATGTAGCAA 58.525 34.615 12.78 0.00 43.14 3.91
325 326 7.970061 AGTTTCGTAATACGTAGATGTAGCAAA 59.030 33.333 12.78 0.00 43.14 3.68
326 327 7.903452 TTCGTAATACGTAGATGTAGCAAAG 57.097 36.000 12.78 0.00 43.14 2.77
327 328 5.911280 TCGTAATACGTAGATGTAGCAAAGC 59.089 40.000 12.78 0.00 43.14 3.51
328 329 5.913514 CGTAATACGTAGATGTAGCAAAGCT 59.086 40.000 4.41 0.00 38.63 3.74
329 330 6.086502 CGTAATACGTAGATGTAGCAAAGCTC 59.913 42.308 4.41 0.00 37.15 4.09
330 331 3.868757 ACGTAGATGTAGCAAAGCTCA 57.131 42.857 0.00 0.00 40.44 4.26
331 332 4.392921 ACGTAGATGTAGCAAAGCTCAT 57.607 40.909 0.00 0.00 40.44 2.90
332 333 4.115516 ACGTAGATGTAGCAAAGCTCATG 58.884 43.478 0.00 0.00 40.44 3.07
333 334 4.115516 CGTAGATGTAGCAAAGCTCATGT 58.884 43.478 0.00 1.31 40.44 3.21
334 335 4.026228 CGTAGATGTAGCAAAGCTCATGTG 60.026 45.833 0.00 0.00 40.44 3.21
335 336 4.212143 AGATGTAGCAAAGCTCATGTGA 57.788 40.909 0.00 0.00 40.44 3.58
336 337 4.582869 AGATGTAGCAAAGCTCATGTGAA 58.417 39.130 0.00 0.00 40.44 3.18
337 338 5.005740 AGATGTAGCAAAGCTCATGTGAAA 58.994 37.500 0.00 0.00 40.44 2.69
338 339 4.754372 TGTAGCAAAGCTCATGTGAAAG 57.246 40.909 0.00 0.00 40.44 2.62
339 340 3.503363 TGTAGCAAAGCTCATGTGAAAGG 59.497 43.478 0.00 0.00 40.44 3.11
340 341 2.590821 AGCAAAGCTCATGTGAAAGGT 58.409 42.857 0.00 0.00 30.62 3.50
341 342 2.295349 AGCAAAGCTCATGTGAAAGGTG 59.705 45.455 0.00 0.00 30.62 4.00
342 343 2.669364 CAAAGCTCATGTGAAAGGTGC 58.331 47.619 0.00 0.00 0.00 5.01
343 344 1.251251 AAGCTCATGTGAAAGGTGCC 58.749 50.000 0.00 0.00 29.54 5.01
344 345 0.957395 AGCTCATGTGAAAGGTGCCG 60.957 55.000 0.00 0.00 29.54 5.69
345 346 1.237285 GCTCATGTGAAAGGTGCCGT 61.237 55.000 0.00 0.00 0.00 5.68
346 347 1.943968 GCTCATGTGAAAGGTGCCGTA 60.944 52.381 0.00 0.00 0.00 4.02
347 348 2.002586 CTCATGTGAAAGGTGCCGTAG 58.997 52.381 0.00 0.00 0.00 3.51
348 349 1.346395 TCATGTGAAAGGTGCCGTAGT 59.654 47.619 0.00 0.00 0.00 2.73
349 350 2.563620 TCATGTGAAAGGTGCCGTAGTA 59.436 45.455 0.00 0.00 0.00 1.82
350 351 2.443887 TGTGAAAGGTGCCGTAGTAC 57.556 50.000 0.00 0.00 0.00 2.73
351 352 1.965643 TGTGAAAGGTGCCGTAGTACT 59.034 47.619 0.00 0.00 0.00 2.73
352 353 3.156293 TGTGAAAGGTGCCGTAGTACTA 58.844 45.455 0.00 0.00 0.00 1.82
353 354 3.192001 TGTGAAAGGTGCCGTAGTACTAG 59.808 47.826 1.87 0.00 0.00 2.57
354 355 2.165030 TGAAAGGTGCCGTAGTACTAGC 59.835 50.000 1.87 5.00 0.00 3.42
355 356 1.843368 AAGGTGCCGTAGTACTAGCA 58.157 50.000 11.65 11.65 0.00 3.49
357 358 3.231222 GTGCCGTAGTACTAGCACG 57.769 57.895 23.58 17.26 45.28 5.34
358 359 0.449388 GTGCCGTAGTACTAGCACGT 59.551 55.000 23.58 0.00 45.28 4.49
359 360 1.665679 GTGCCGTAGTACTAGCACGTA 59.334 52.381 23.58 8.47 45.28 3.57
360 361 1.665679 TGCCGTAGTACTAGCACGTAC 59.334 52.381 11.65 6.42 39.97 3.67
361 362 1.003438 GCCGTAGTACTAGCACGTACC 60.003 57.143 13.93 1.30 40.42 3.34
362 363 2.279741 CCGTAGTACTAGCACGTACCA 58.720 52.381 13.93 0.00 40.42 3.25
363 364 2.030946 CCGTAGTACTAGCACGTACCAC 59.969 54.545 13.93 7.65 40.42 4.16
364 365 2.932614 CGTAGTACTAGCACGTACCACT 59.067 50.000 1.87 0.00 40.42 4.00
365 366 3.242220 CGTAGTACTAGCACGTACCACTG 60.242 52.174 1.87 3.29 40.42 3.66
366 367 1.471684 AGTACTAGCACGTACCACTGC 59.528 52.381 10.74 0.00 40.42 4.40
444 763 3.502990 TTCCTACACCGCGCACGTT 62.503 57.895 8.75 0.00 37.70 3.99
463 782 0.036483 TAATGCTTGCCACAGCTCGA 60.036 50.000 1.78 0.00 40.79 4.04
471 790 2.278206 CACAGCTCGATCGACCCG 60.278 66.667 15.15 6.06 0.00 5.28
496 815 4.378770 CCGGGATGATATTCGCATTCAAAG 60.379 45.833 0.00 0.00 0.00 2.77
505 824 0.798776 CGCATTCAAAGCTCCGAACT 59.201 50.000 0.18 0.00 0.00 3.01
575 897 0.389037 TGCGCACTCATCTCAGTCAC 60.389 55.000 5.66 0.00 0.00 3.67
579 901 1.626747 CACTCATCTCAGTCACGCAG 58.373 55.000 0.00 0.00 0.00 5.18
583 905 1.082679 CATCTCAGTCACGCAGCCTG 61.083 60.000 0.00 0.00 0.00 4.85
605 931 3.061848 CCCGCCCGTTTTCAGCAT 61.062 61.111 0.00 0.00 0.00 3.79
744 1070 2.203001 CACACAGCACGTCCCACA 60.203 61.111 0.00 0.00 0.00 4.17
753 1079 0.249073 CACGTCCCACAGATCCGATC 60.249 60.000 0.00 0.00 0.00 3.69
836 1163 1.302383 CCGTGGCCACATAAAAGCGA 61.302 55.000 34.16 0.00 0.00 4.93
848 1175 4.802051 AAGCGACGCCCATGCCAT 62.802 61.111 17.79 0.00 0.00 4.40
913 1240 0.380378 CGACGGTGCCCATAAATTGG 59.620 55.000 0.00 0.00 46.00 3.16
1088 1443 4.776322 CATGAAGACCGGCGGCCA 62.776 66.667 28.71 18.90 0.00 5.36
1350 1705 3.883744 CTCGTTTCCGCCTGCCTGT 62.884 63.158 0.00 0.00 0.00 4.00
1365 1720 0.530288 CCTGTTTAACCGGCATTGGG 59.470 55.000 0.00 0.00 0.00 4.12
1385 1740 2.161609 GGCATTTCGTTAACTGGGAGTG 59.838 50.000 3.71 0.00 0.00 3.51
1413 1769 0.972883 AGAGCTGGGACTGTTCAGAC 59.027 55.000 13.71 0.35 39.71 3.51
1414 1770 0.681733 GAGCTGGGACTGTTCAGACA 59.318 55.000 13.71 2.49 37.45 3.41
1415 1771 1.070758 GAGCTGGGACTGTTCAGACAA 59.929 52.381 13.71 0.00 37.45 3.18
1444 1808 0.387750 GTACCCACACGAGTTCGACC 60.388 60.000 8.72 0.00 43.02 4.79
1447 1811 1.366366 CCACACGAGTTCGACCCTT 59.634 57.895 8.72 0.00 43.02 3.95
1470 1834 7.362401 CCTTGTCATTCCTAGAGTGAATTTTGG 60.362 40.741 0.00 0.00 30.54 3.28
1518 1882 8.767478 ATCTCAAGCAAATTAAGGTGAAAATG 57.233 30.769 0.00 0.00 0.00 2.32
1519 1883 7.950512 TCTCAAGCAAATTAAGGTGAAAATGA 58.049 30.769 0.00 0.00 0.00 2.57
1520 1884 7.867403 TCTCAAGCAAATTAAGGTGAAAATGAC 59.133 33.333 0.00 0.00 0.00 3.06
1521 1885 7.725251 TCAAGCAAATTAAGGTGAAAATGACT 58.275 30.769 0.00 0.00 0.00 3.41
1523 1887 7.951530 AGCAAATTAAGGTGAAAATGACTTG 57.048 32.000 0.00 0.00 0.00 3.16
1524 1888 7.500141 AGCAAATTAAGGTGAAAATGACTTGT 58.500 30.769 0.00 0.00 0.00 3.16
1575 1951 4.379174 CGGAGGGAACAAGTGTGG 57.621 61.111 0.00 0.00 0.00 4.17
1586 1962 3.213206 ACAAGTGTGGATTCAGAAGCA 57.787 42.857 0.00 0.00 0.00 3.91
1588 1964 1.800805 AGTGTGGATTCAGAAGCACG 58.199 50.000 0.00 0.00 32.74 5.34
1589 1965 0.166814 GTGTGGATTCAGAAGCACGC 59.833 55.000 0.00 0.44 0.00 5.34
1590 1966 0.250252 TGTGGATTCAGAAGCACGCA 60.250 50.000 0.00 0.32 0.00 5.24
1591 1967 0.445436 GTGGATTCAGAAGCACGCAG 59.555 55.000 0.00 0.00 0.00 5.18
1592 1968 1.300971 TGGATTCAGAAGCACGCAGC 61.301 55.000 0.00 0.00 46.19 5.25
1659 2035 3.190327 TGTTCTGGTTGACGCATAAATGG 59.810 43.478 0.00 0.00 0.00 3.16
1660 2036 3.342377 TCTGGTTGACGCATAAATGGA 57.658 42.857 0.00 0.00 0.00 3.41
1661 2037 3.270027 TCTGGTTGACGCATAAATGGAG 58.730 45.455 0.00 0.00 0.00 3.86
1714 2093 1.022451 TGAATTGGGGCGCGAAGTAC 61.022 55.000 12.10 0.00 0.00 2.73
1718 2097 1.534336 TTGGGGCGCGAAGTACTACA 61.534 55.000 12.10 0.00 0.00 2.74
1725 2104 2.477525 GCGCGAAGTACTACAAGTAGCT 60.478 50.000 12.10 0.00 36.66 3.32
1726 2105 3.242543 GCGCGAAGTACTACAAGTAGCTA 60.243 47.826 12.10 0.00 36.66 3.32
1727 2106 4.554330 GCGCGAAGTACTACAAGTAGCTAT 60.554 45.833 12.10 0.00 36.66 2.97
1756 2135 3.670625 TCTGCCGTGCTACACTTAATTT 58.329 40.909 0.00 0.00 31.34 1.82
1842 2221 4.510340 TGAGAGCGTCACCTTAAGAAAAAC 59.490 41.667 3.36 0.00 0.00 2.43
1862 2246 1.334556 CAGAGAGAGCATCGTCCTCTG 59.665 57.143 0.00 0.00 45.06 3.35
1865 2249 1.670949 GAGAGCATCGTCCTCTGCCA 61.671 60.000 6.91 0.00 42.67 4.92
1874 2258 1.406069 CGTCCTCTGCCAGCAGTTAAT 60.406 52.381 18.61 0.00 43.96 1.40
1877 2261 2.159099 TCCTCTGCCAGCAGTTAATACG 60.159 50.000 18.61 1.42 43.96 3.06
1923 2307 7.801547 AGTCATGAATTGCATTAAAGAAACG 57.198 32.000 0.00 0.00 34.15 3.60
1924 2308 7.370383 AGTCATGAATTGCATTAAAGAAACGT 58.630 30.769 0.00 0.00 34.15 3.99
1925 2309 7.538678 AGTCATGAATTGCATTAAAGAAACGTC 59.461 33.333 0.00 0.00 34.15 4.34
1926 2310 6.806249 TCATGAATTGCATTAAAGAAACGTCC 59.194 34.615 0.00 0.00 34.15 4.79
1927 2311 6.078202 TGAATTGCATTAAAGAAACGTCCA 57.922 33.333 0.00 0.00 0.00 4.02
1928 2312 6.686630 TGAATTGCATTAAAGAAACGTCCAT 58.313 32.000 0.00 0.00 0.00 3.41
1929 2313 6.585702 TGAATTGCATTAAAGAAACGTCCATG 59.414 34.615 0.00 0.00 0.00 3.66
1930 2314 4.433186 TGCATTAAAGAAACGTCCATGG 57.567 40.909 4.97 4.97 0.00 3.66
1931 2315 3.823873 TGCATTAAAGAAACGTCCATGGT 59.176 39.130 12.58 0.00 0.00 3.55
1932 2316 4.279671 TGCATTAAAGAAACGTCCATGGTT 59.720 37.500 12.58 0.00 0.00 3.67
1933 2317 4.857037 GCATTAAAGAAACGTCCATGGTTC 59.143 41.667 12.58 8.18 0.00 3.62
1934 2318 5.399013 CATTAAAGAAACGTCCATGGTTCC 58.601 41.667 12.58 0.02 0.00 3.62
1935 2319 1.905637 AAGAAACGTCCATGGTTCCC 58.094 50.000 12.58 0.00 0.00 3.97
1936 2320 0.037734 AGAAACGTCCATGGTTCCCC 59.962 55.000 12.58 0.00 0.00 4.81
1937 2321 0.037734 GAAACGTCCATGGTTCCCCT 59.962 55.000 12.58 0.00 0.00 4.79
1938 2322 0.037734 AAACGTCCATGGTTCCCCTC 59.962 55.000 12.58 0.00 0.00 4.30
1939 2323 1.131303 AACGTCCATGGTTCCCCTCA 61.131 55.000 12.58 0.00 0.00 3.86
1940 2324 1.131303 ACGTCCATGGTTCCCCTCAA 61.131 55.000 12.58 0.00 0.00 3.02
1941 2325 0.037590 CGTCCATGGTTCCCCTCAAA 59.962 55.000 12.58 0.00 0.00 2.69
1942 2326 1.546773 CGTCCATGGTTCCCCTCAAAA 60.547 52.381 12.58 0.00 0.00 2.44
1943 2327 2.604139 GTCCATGGTTCCCCTCAAAAA 58.396 47.619 12.58 0.00 0.00 1.94
2043 2427 7.072961 ACCATCTGGATAATGTATTCTTCAGGT 59.927 37.037 2.55 0.00 38.94 4.00
2055 2439 7.119387 TGTATTCTTCAGGTGATAGAGTCTGA 58.881 38.462 1.86 0.00 34.84 3.27
2083 2467 5.993055 TGCATTATTCAGGAGACAGAATCA 58.007 37.500 0.00 0.00 42.19 2.57
2190 2599 1.912220 TGGATTCCACTAAGGCCGG 59.088 57.895 0.00 0.00 37.29 6.13
2243 2656 8.175925 TGAGGAGATATAATCTGAACTCTGTG 57.824 38.462 0.00 0.00 40.38 3.66
2254 2667 2.191128 AACTCTGTGTTCATCAGGCC 57.809 50.000 0.00 0.00 32.63 5.19
2286 2699 3.638627 GGAATTATTCTGCCCCTTTGAGG 59.361 47.826 4.87 0.00 34.30 3.86
2312 2729 2.341846 AGTCATGGTGTCCACGTTTT 57.658 45.000 0.00 0.00 35.80 2.43
2313 2730 2.650322 AGTCATGGTGTCCACGTTTTT 58.350 42.857 0.00 0.00 35.80 1.94
2474 2897 0.317160 ACCAACATCTTCAGCGACGA 59.683 50.000 0.00 0.00 0.00 4.20
2622 3045 4.041321 GTCAATGATCCATCTCTCCATCCA 59.959 45.833 0.00 0.00 0.00 3.41
2623 3046 4.850386 TCAATGATCCATCTCTCCATCCAT 59.150 41.667 0.00 0.00 0.00 3.41
2624 3047 5.045797 TCAATGATCCATCTCTCCATCCATC 60.046 44.000 0.00 0.00 0.00 3.51
2664 3087 7.552459 TGCATGATCTTGTTGATTGATTGATT 58.448 30.769 10.05 0.00 35.14 2.57
3093 3523 1.637338 CCATCGGGAGGATCTGATCA 58.363 55.000 18.64 0.00 35.59 2.92
3166 3602 0.933047 TGTCTCGTGACTCGTTTGCG 60.933 55.000 17.64 0.00 43.29 4.85
3200 3636 2.489329 GCTGCCAGCAGAATGTAAAGAA 59.511 45.455 23.40 0.00 46.30 2.52
3225 3670 4.002982 TCTGTGGAAAAACATGATCGGAG 58.997 43.478 0.00 0.00 0.00 4.63
3254 3699 5.570234 AGGTCGCAGTTTCTTGTTTTTAA 57.430 34.783 0.00 0.00 0.00 1.52
3259 3704 5.124138 TCGCAGTTTCTTGTTTTTAACCTGA 59.876 36.000 0.00 0.00 0.00 3.86
3272 3718 2.174685 AACCTGAGTTTGCCCCTTTT 57.825 45.000 0.00 0.00 29.61 2.27
3274 3720 0.598065 CCTGAGTTTGCCCCTTTTCG 59.402 55.000 0.00 0.00 0.00 3.46
3299 3745 4.360951 TTTTTCCCCACTCGTGACTATT 57.639 40.909 0.00 0.00 0.00 1.73
3302 3748 0.462047 CCCCACTCGTGACTATTGCC 60.462 60.000 0.00 0.00 0.00 4.52
3304 3750 0.806102 CCACTCGTGACTATTGCCGG 60.806 60.000 0.00 0.00 0.00 6.13
3305 3751 1.153628 ACTCGTGACTATTGCCGGC 60.154 57.895 22.73 22.73 0.00 6.13
3306 3752 1.141881 CTCGTGACTATTGCCGGCT 59.858 57.895 29.70 11.31 0.00 5.52
3307 3753 0.384309 CTCGTGACTATTGCCGGCTA 59.616 55.000 29.70 22.36 0.00 3.93
3308 3754 0.101759 TCGTGACTATTGCCGGCTAC 59.898 55.000 29.70 8.73 0.00 3.58
3309 3755 0.102481 CGTGACTATTGCCGGCTACT 59.898 55.000 29.70 14.45 0.00 2.57
3310 3756 1.335810 CGTGACTATTGCCGGCTACTA 59.664 52.381 29.70 14.82 0.00 1.82
3311 3757 2.030185 CGTGACTATTGCCGGCTACTAT 60.030 50.000 29.70 17.22 0.00 2.12
3312 3758 3.576648 GTGACTATTGCCGGCTACTATC 58.423 50.000 29.70 19.33 0.00 2.08
3313 3759 3.005472 GTGACTATTGCCGGCTACTATCA 59.995 47.826 29.70 21.66 0.00 2.15
3314 3760 3.005472 TGACTATTGCCGGCTACTATCAC 59.995 47.826 29.70 12.40 0.00 3.06
3315 3761 2.299297 ACTATTGCCGGCTACTATCACC 59.701 50.000 29.70 0.00 0.00 4.02
3316 3762 0.033504 ATTGCCGGCTACTATCACCG 59.966 55.000 29.70 0.00 46.50 4.94
3322 3768 2.426651 GCTACTATCACCGAGCCCA 58.573 57.895 0.00 0.00 0.00 5.36
3323 3769 0.032267 GCTACTATCACCGAGCCCAC 59.968 60.000 0.00 0.00 0.00 4.61
3324 3770 0.311165 CTACTATCACCGAGCCCACG 59.689 60.000 0.00 0.00 0.00 4.94
3332 3778 2.511600 CGAGCCCACGGATTCACC 60.512 66.667 0.00 0.00 0.00 4.02
3333 3779 2.990479 GAGCCCACGGATTCACCT 59.010 61.111 0.00 0.00 36.31 4.00
3334 3780 1.672854 CGAGCCCACGGATTCACCTA 61.673 60.000 0.00 0.00 36.31 3.08
3335 3781 0.105039 GAGCCCACGGATTCACCTAG 59.895 60.000 0.00 0.00 36.31 3.02
3336 3782 1.523938 GCCCACGGATTCACCTAGC 60.524 63.158 0.00 0.00 36.31 3.42
3337 3783 1.146263 CCCACGGATTCACCTAGCC 59.854 63.158 0.00 0.00 36.31 3.93
3338 3784 1.338136 CCCACGGATTCACCTAGCCT 61.338 60.000 0.00 0.00 36.31 4.58
3339 3785 0.105039 CCACGGATTCACCTAGCCTC 59.895 60.000 0.00 0.00 36.31 4.70
3340 3786 1.115467 CACGGATTCACCTAGCCTCT 58.885 55.000 0.00 0.00 36.31 3.69
3341 3787 1.482593 CACGGATTCACCTAGCCTCTT 59.517 52.381 0.00 0.00 36.31 2.85
3342 3788 1.757699 ACGGATTCACCTAGCCTCTTC 59.242 52.381 0.00 0.00 36.31 2.87
3343 3789 1.069358 CGGATTCACCTAGCCTCTTCC 59.931 57.143 0.00 0.00 36.31 3.46
3344 3790 2.403561 GGATTCACCTAGCCTCTTCCT 58.596 52.381 0.00 0.00 35.41 3.36
3345 3791 2.103941 GGATTCACCTAGCCTCTTCCTG 59.896 54.545 0.00 0.00 35.41 3.86
3346 3792 0.905357 TTCACCTAGCCTCTTCCTGC 59.095 55.000 0.00 0.00 0.00 4.85
3347 3793 0.978146 TCACCTAGCCTCTTCCTGCC 60.978 60.000 0.00 0.00 0.00 4.85
3348 3794 2.060980 ACCTAGCCTCTTCCTGCCG 61.061 63.158 0.00 0.00 0.00 5.69
3349 3795 2.107953 CTAGCCTCTTCCTGCCGC 59.892 66.667 0.00 0.00 0.00 6.53
3350 3796 2.364317 TAGCCTCTTCCTGCCGCT 60.364 61.111 0.00 0.00 0.00 5.52
3351 3797 2.362329 CTAGCCTCTTCCTGCCGCTC 62.362 65.000 0.00 0.00 0.00 5.03
3352 3798 4.087892 GCCTCTTCCTGCCGCTCA 62.088 66.667 0.00 0.00 0.00 4.26
3353 3799 2.186384 CCTCTTCCTGCCGCTCAG 59.814 66.667 0.00 0.00 42.49 3.35
3377 3823 4.754667 GTTGGCGGGGAGGACGAC 62.755 72.222 0.00 0.00 40.49 4.34
3382 3828 3.760035 CGGGGAGGACGACCACAG 61.760 72.222 6.71 0.00 38.94 3.66
3383 3829 2.603776 GGGGAGGACGACCACAGT 60.604 66.667 6.71 0.00 38.94 3.55
3384 3830 2.657237 GGGAGGACGACCACAGTG 59.343 66.667 6.71 0.00 38.94 3.66
3385 3831 2.048127 GGAGGACGACCACAGTGC 60.048 66.667 6.71 0.00 38.94 4.40
3386 3832 2.574955 GGAGGACGACCACAGTGCT 61.575 63.158 6.71 0.00 42.95 4.40
3387 3833 1.367840 GAGGACGACCACAGTGCTT 59.632 57.895 6.71 0.00 40.36 3.91
3388 3834 0.667792 GAGGACGACCACAGTGCTTC 60.668 60.000 6.71 0.00 40.36 3.86
3389 3835 1.069090 GGACGACCACAGTGCTTCA 59.931 57.895 0.00 0.00 35.97 3.02
3390 3836 1.222115 GGACGACCACAGTGCTTCAC 61.222 60.000 0.00 0.00 35.97 3.18
3391 3837 1.222115 GACGACCACAGTGCTTCACC 61.222 60.000 0.00 0.00 34.49 4.02
3392 3838 1.069765 CGACCACAGTGCTTCACCT 59.930 57.895 0.00 0.00 34.49 4.00
3393 3839 0.946221 CGACCACAGTGCTTCACCTC 60.946 60.000 0.00 0.00 34.49 3.85
3394 3840 0.603975 GACCACAGTGCTTCACCTCC 60.604 60.000 0.00 0.00 34.49 4.30
3395 3841 1.344953 ACCACAGTGCTTCACCTCCA 61.345 55.000 0.00 0.00 34.49 3.86
3396 3842 0.604780 CCACAGTGCTTCACCTCCAG 60.605 60.000 0.00 0.00 34.49 3.86
3409 3855 2.036346 CACCTCCAGCTTTTCTTTTGGG 59.964 50.000 0.00 0.00 0.00 4.12
3444 3890 1.305219 CCGGCCTCTGCATTCGAAAA 61.305 55.000 0.00 0.00 40.13 2.29
3519 3968 3.648339 TTACAACTCGTAAACGGAGCT 57.352 42.857 2.24 0.00 37.14 4.09
3523 3979 3.985925 ACAACTCGTAAACGGAGCTAAAG 59.014 43.478 2.24 0.00 40.29 1.85
3577 4035 4.486090 CGGGATAATAGGACAAGATCACG 58.514 47.826 0.00 0.00 37.13 4.35
3581 4039 6.015350 GGGATAATAGGACAAGATCACGAGAA 60.015 42.308 0.00 0.00 0.00 2.87
3584 4042 1.895798 AGGACAAGATCACGAGAAGCA 59.104 47.619 0.00 0.00 0.00 3.91
3585 4043 1.996191 GGACAAGATCACGAGAAGCAC 59.004 52.381 0.00 0.00 0.00 4.40
3589 4047 3.056250 ACAAGATCACGAGAAGCACATCT 60.056 43.478 0.00 0.00 0.00 2.90
3615 4073 0.245539 GAGACCGTCATCCAAACCGA 59.754 55.000 0.40 0.00 0.00 4.69
3629 4087 4.141287 CCAAACCGATTGAATATAGCCCA 58.859 43.478 2.89 0.00 41.85 5.36
3671 4129 4.627284 TGCACTTAGTAACCAAAGGCTA 57.373 40.909 0.00 0.00 0.00 3.93
3676 4134 4.842380 ACTTAGTAACCAAAGGCTACCTGA 59.158 41.667 0.00 0.00 32.13 3.86
3680 4138 3.595190 AACCAAAGGCTACCTGAAGTT 57.405 42.857 0.00 0.00 32.13 2.66
3731 4190 2.423892 TCCATGTCGTAGCTCTGAAGAC 59.576 50.000 0.00 0.00 0.00 3.01
3755 4214 9.476202 GACAACCTGCAAGAAAGTTAAAATATT 57.524 29.630 0.00 0.00 34.07 1.28
3825 4288 0.944386 GCGCACATATTCCAATCCGT 59.056 50.000 0.30 0.00 0.00 4.69
3836 4299 1.758280 TCCAATCCGTATACAAGCCGT 59.242 47.619 3.32 0.00 0.00 5.68
3877 4340 2.937873 GCTAGCCACGTCCCAAATAACA 60.938 50.000 2.29 0.00 0.00 2.41
3878 4341 1.530323 AGCCACGTCCCAAATAACAC 58.470 50.000 0.00 0.00 0.00 3.32
3895 4358 1.338105 ACACGCTTCAATGCTAGCTGA 60.338 47.619 17.23 9.52 35.25 4.26
3919 4382 9.173231 TGAAGGGGTAATGTTAAAGGCTATATA 57.827 33.333 0.00 0.00 0.00 0.86
4004 4469 6.129378 CGTCATGATCACAAAAACAACATCAC 60.129 38.462 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.603455 CCACATGCCGTTTCCCACT 60.603 57.895 0.00 0.00 0.00 4.00
2 3 1.175983 TTCCACATGCCGTTTCCCAC 61.176 55.000 0.00 0.00 0.00 4.61
4 5 1.757682 TATTCCACATGCCGTTTCCC 58.242 50.000 0.00 0.00 0.00 3.97
6 7 3.964909 GGAATATTCCACATGCCGTTTC 58.035 45.455 26.61 0.00 46.76 2.78
19 20 3.008049 ACTCCACCCGCATAGGAATATTC 59.992 47.826 6.93 6.93 45.00 1.75
20 21 2.979678 ACTCCACCCGCATAGGAATATT 59.020 45.455 0.00 0.00 45.00 1.28
21 22 2.621070 ACTCCACCCGCATAGGAATAT 58.379 47.619 0.00 0.00 45.00 1.28
22 23 2.097110 ACTCCACCCGCATAGGAATA 57.903 50.000 0.00 0.00 45.00 1.75
23 24 1.692519 GTACTCCACCCGCATAGGAAT 59.307 52.381 0.00 0.00 45.00 3.01
24 25 1.117150 GTACTCCACCCGCATAGGAA 58.883 55.000 0.00 0.00 45.00 3.36
25 26 1.105167 CGTACTCCACCCGCATAGGA 61.105 60.000 0.00 0.00 45.00 2.94
26 27 1.362717 CGTACTCCACCCGCATAGG 59.637 63.158 0.00 0.00 40.63 2.57
27 28 1.362717 CCGTACTCCACCCGCATAG 59.637 63.158 0.00 0.00 0.00 2.23
28 29 1.380246 ACCGTACTCCACCCGCATA 60.380 57.895 0.00 0.00 0.00 3.14
29 30 2.682494 ACCGTACTCCACCCGCAT 60.682 61.111 0.00 0.00 0.00 4.73
30 31 3.376078 GACCGTACTCCACCCGCA 61.376 66.667 0.00 0.00 0.00 5.69
31 32 3.352338 CTGACCGTACTCCACCCGC 62.352 68.421 0.00 0.00 0.00 6.13
32 33 1.930908 GACTGACCGTACTCCACCCG 61.931 65.000 0.00 0.00 0.00 5.28
33 34 0.896940 TGACTGACCGTACTCCACCC 60.897 60.000 0.00 0.00 0.00 4.61
34 35 1.183549 ATGACTGACCGTACTCCACC 58.816 55.000 0.00 0.00 0.00 4.61
35 36 2.492484 AGAATGACTGACCGTACTCCAC 59.508 50.000 0.00 0.00 0.00 4.02
36 37 2.803956 AGAATGACTGACCGTACTCCA 58.196 47.619 0.00 0.00 0.00 3.86
37 38 4.978083 TTAGAATGACTGACCGTACTCC 57.022 45.455 0.00 0.00 0.00 3.85
38 39 6.237861 GCAATTTAGAATGACTGACCGTACTC 60.238 42.308 0.00 0.00 0.00 2.59
39 40 5.581085 GCAATTTAGAATGACTGACCGTACT 59.419 40.000 0.00 0.00 0.00 2.73
40 41 5.581085 AGCAATTTAGAATGACTGACCGTAC 59.419 40.000 0.00 0.00 0.00 3.67
41 42 5.730550 AGCAATTTAGAATGACTGACCGTA 58.269 37.500 0.00 0.00 0.00 4.02
42 43 4.579869 AGCAATTTAGAATGACTGACCGT 58.420 39.130 0.00 0.00 0.00 4.83
43 44 6.313905 AGTTAGCAATTTAGAATGACTGACCG 59.686 38.462 0.00 0.00 0.00 4.79
44 45 7.617041 AGTTAGCAATTTAGAATGACTGACC 57.383 36.000 0.00 0.00 0.00 4.02
45 46 9.151471 TGTAGTTAGCAATTTAGAATGACTGAC 57.849 33.333 0.00 0.00 0.00 3.51
46 47 9.151471 GTGTAGTTAGCAATTTAGAATGACTGA 57.849 33.333 0.00 0.00 0.00 3.41
47 48 8.935844 TGTGTAGTTAGCAATTTAGAATGACTG 58.064 33.333 0.00 0.00 0.00 3.51
48 49 8.936864 GTGTGTAGTTAGCAATTTAGAATGACT 58.063 33.333 0.00 0.00 0.00 3.41
49 50 8.717821 TGTGTGTAGTTAGCAATTTAGAATGAC 58.282 33.333 0.00 0.00 0.00 3.06
50 51 8.840833 TGTGTGTAGTTAGCAATTTAGAATGA 57.159 30.769 0.00 0.00 0.00 2.57
51 52 9.494479 CATGTGTGTAGTTAGCAATTTAGAATG 57.506 33.333 0.00 0.00 0.00 2.67
52 53 9.448438 TCATGTGTGTAGTTAGCAATTTAGAAT 57.552 29.630 0.00 0.00 0.00 2.40
53 54 8.717821 GTCATGTGTGTAGTTAGCAATTTAGAA 58.282 33.333 0.00 0.00 0.00 2.10
54 55 8.094548 AGTCATGTGTGTAGTTAGCAATTTAGA 58.905 33.333 0.00 0.00 0.00 2.10
55 56 8.256611 AGTCATGTGTGTAGTTAGCAATTTAG 57.743 34.615 0.00 0.00 0.00 1.85
56 57 7.062956 CGAGTCATGTGTGTAGTTAGCAATTTA 59.937 37.037 0.00 0.00 0.00 1.40
57 58 6.128553 CGAGTCATGTGTGTAGTTAGCAATTT 60.129 38.462 0.00 0.00 0.00 1.82
58 59 5.348724 CGAGTCATGTGTGTAGTTAGCAATT 59.651 40.000 0.00 0.00 0.00 2.32
59 60 4.864806 CGAGTCATGTGTGTAGTTAGCAAT 59.135 41.667 0.00 0.00 0.00 3.56
60 61 4.234574 CGAGTCATGTGTGTAGTTAGCAA 58.765 43.478 0.00 0.00 0.00 3.91
61 62 3.366985 CCGAGTCATGTGTGTAGTTAGCA 60.367 47.826 0.00 0.00 0.00 3.49
62 63 3.179830 CCGAGTCATGTGTGTAGTTAGC 58.820 50.000 0.00 0.00 0.00 3.09
63 64 3.442625 TCCCGAGTCATGTGTGTAGTTAG 59.557 47.826 0.00 0.00 0.00 2.34
64 65 3.423749 TCCCGAGTCATGTGTGTAGTTA 58.576 45.455 0.00 0.00 0.00 2.24
65 66 2.244695 TCCCGAGTCATGTGTGTAGTT 58.755 47.619 0.00 0.00 0.00 2.24
66 67 1.919240 TCCCGAGTCATGTGTGTAGT 58.081 50.000 0.00 0.00 0.00 2.73
67 68 3.526931 AATCCCGAGTCATGTGTGTAG 57.473 47.619 0.00 0.00 0.00 2.74
68 69 4.464951 ACTTAATCCCGAGTCATGTGTGTA 59.535 41.667 0.00 0.00 0.00 2.90
69 70 3.260884 ACTTAATCCCGAGTCATGTGTGT 59.739 43.478 0.00 0.00 0.00 3.72
70 71 3.861840 ACTTAATCCCGAGTCATGTGTG 58.138 45.455 0.00 0.00 0.00 3.82
71 72 4.553330 AACTTAATCCCGAGTCATGTGT 57.447 40.909 0.00 0.00 0.00 3.72
72 73 6.761242 TGATTAACTTAATCCCGAGTCATGTG 59.239 38.462 15.89 0.00 43.00 3.21
73 74 6.884832 TGATTAACTTAATCCCGAGTCATGT 58.115 36.000 15.89 0.00 43.00 3.21
74 75 7.969536 ATGATTAACTTAATCCCGAGTCATG 57.030 36.000 15.89 0.00 43.00 3.07
75 76 9.490379 GTTATGATTAACTTAATCCCGAGTCAT 57.510 33.333 15.89 7.54 43.00 3.06
76 77 7.929785 GGTTATGATTAACTTAATCCCGAGTCA 59.070 37.037 15.89 1.47 43.00 3.41
77 78 7.929785 TGGTTATGATTAACTTAATCCCGAGTC 59.070 37.037 15.89 5.52 43.00 3.36
78 79 7.798071 TGGTTATGATTAACTTAATCCCGAGT 58.202 34.615 15.89 3.72 43.00 4.18
79 80 8.848474 ATGGTTATGATTAACTTAATCCCGAG 57.152 34.615 15.89 0.00 43.00 4.63
97 98 9.936329 ACCCACTGAATAAAATCTAATGGTTAT 57.064 29.630 0.00 0.00 0.00 1.89
98 99 9.762381 AACCCACTGAATAAAATCTAATGGTTA 57.238 29.630 0.00 0.00 0.00 2.85
99 100 8.664669 AACCCACTGAATAAAATCTAATGGTT 57.335 30.769 0.00 0.00 0.00 3.67
100 101 8.664669 AAACCCACTGAATAAAATCTAATGGT 57.335 30.769 0.00 0.00 0.00 3.55
107 108 9.952188 GCTAGATTAAACCCACTGAATAAAATC 57.048 33.333 0.00 0.00 0.00 2.17
108 109 8.621286 CGCTAGATTAAACCCACTGAATAAAAT 58.379 33.333 0.00 0.00 0.00 1.82
109 110 7.066525 CCGCTAGATTAAACCCACTGAATAAAA 59.933 37.037 0.00 0.00 0.00 1.52
110 111 6.540914 CCGCTAGATTAAACCCACTGAATAAA 59.459 38.462 0.00 0.00 0.00 1.40
111 112 6.053005 CCGCTAGATTAAACCCACTGAATAA 58.947 40.000 0.00 0.00 0.00 1.40
112 113 5.129815 ACCGCTAGATTAAACCCACTGAATA 59.870 40.000 0.00 0.00 0.00 1.75
113 114 4.080526 ACCGCTAGATTAAACCCACTGAAT 60.081 41.667 0.00 0.00 0.00 2.57
114 115 3.262405 ACCGCTAGATTAAACCCACTGAA 59.738 43.478 0.00 0.00 0.00 3.02
115 116 2.835764 ACCGCTAGATTAAACCCACTGA 59.164 45.455 0.00 0.00 0.00 3.41
116 117 2.936498 CACCGCTAGATTAAACCCACTG 59.064 50.000 0.00 0.00 0.00 3.66
117 118 2.679930 GCACCGCTAGATTAAACCCACT 60.680 50.000 0.00 0.00 0.00 4.00
118 119 1.669265 GCACCGCTAGATTAAACCCAC 59.331 52.381 0.00 0.00 0.00 4.61
119 120 1.557832 AGCACCGCTAGATTAAACCCA 59.442 47.619 0.00 0.00 36.99 4.51
120 121 2.327200 AGCACCGCTAGATTAAACCC 57.673 50.000 0.00 0.00 36.99 4.11
121 122 5.054477 TGATTAGCACCGCTAGATTAAACC 58.946 41.667 0.00 0.00 42.34 3.27
122 123 6.598753 TTGATTAGCACCGCTAGATTAAAC 57.401 37.500 0.00 0.00 42.34 2.01
123 124 7.171508 CAGATTGATTAGCACCGCTAGATTAAA 59.828 37.037 0.00 0.00 42.34 1.52
124 125 6.646653 CAGATTGATTAGCACCGCTAGATTAA 59.353 38.462 0.00 0.00 42.34 1.40
125 126 6.159293 CAGATTGATTAGCACCGCTAGATTA 58.841 40.000 0.00 0.00 42.34 1.75
126 127 4.993584 CAGATTGATTAGCACCGCTAGATT 59.006 41.667 0.00 0.00 42.34 2.40
127 128 4.562347 CCAGATTGATTAGCACCGCTAGAT 60.562 45.833 0.00 0.00 42.34 1.98
128 129 3.243873 CCAGATTGATTAGCACCGCTAGA 60.244 47.826 0.00 0.00 42.34 2.43
129 130 3.062763 CCAGATTGATTAGCACCGCTAG 58.937 50.000 0.00 0.00 42.34 3.42
130 131 2.224281 CCCAGATTGATTAGCACCGCTA 60.224 50.000 0.00 0.00 40.44 4.26
131 132 1.475751 CCCAGATTGATTAGCACCGCT 60.476 52.381 0.00 0.00 43.41 5.52
132 133 0.947244 CCCAGATTGATTAGCACCGC 59.053 55.000 0.00 0.00 0.00 5.68
133 134 2.332063 ACCCAGATTGATTAGCACCG 57.668 50.000 0.00 0.00 0.00 4.94
134 135 4.150897 TGTACCCAGATTGATTAGCACC 57.849 45.455 0.00 0.00 0.00 5.01
135 136 6.095440 ACAATTGTACCCAGATTGATTAGCAC 59.905 38.462 9.97 0.00 35.36 4.40
136 137 6.186957 ACAATTGTACCCAGATTGATTAGCA 58.813 36.000 9.97 0.00 35.36 3.49
137 138 6.699575 ACAATTGTACCCAGATTGATTAGC 57.300 37.500 9.97 0.00 35.36 3.09
138 139 7.970061 CACAACAATTGTACCCAGATTGATTAG 59.030 37.037 12.39 0.00 43.23 1.73
139 140 7.450014 ACACAACAATTGTACCCAGATTGATTA 59.550 33.333 12.39 0.00 43.23 1.75
140 141 6.267471 ACACAACAATTGTACCCAGATTGATT 59.733 34.615 12.39 0.00 43.23 2.57
141 142 5.774690 ACACAACAATTGTACCCAGATTGAT 59.225 36.000 12.39 0.00 43.23 2.57
142 143 5.009510 CACACAACAATTGTACCCAGATTGA 59.990 40.000 12.39 0.00 43.23 2.57
143 144 5.221880 CACACAACAATTGTACCCAGATTG 58.778 41.667 12.39 6.31 43.23 2.67
144 145 4.280677 CCACACAACAATTGTACCCAGATT 59.719 41.667 12.39 0.00 43.23 2.40
145 146 3.826157 CCACACAACAATTGTACCCAGAT 59.174 43.478 12.39 0.00 43.23 2.90
146 147 3.218453 CCACACAACAATTGTACCCAGA 58.782 45.455 12.39 0.00 43.23 3.86
147 148 2.288152 GCCACACAACAATTGTACCCAG 60.288 50.000 12.39 3.43 43.23 4.45
148 149 1.683917 GCCACACAACAATTGTACCCA 59.316 47.619 12.39 0.00 43.23 4.51
149 150 1.335506 CGCCACACAACAATTGTACCC 60.336 52.381 12.39 0.00 43.23 3.69
150 151 1.335496 ACGCCACACAACAATTGTACC 59.665 47.619 12.39 0.00 43.23 3.34
151 152 2.766970 ACGCCACACAACAATTGTAC 57.233 45.000 12.39 0.00 43.23 2.90
152 153 4.575236 TCTTAACGCCACACAACAATTGTA 59.425 37.500 12.39 0.00 43.23 2.41
153 154 3.378742 TCTTAACGCCACACAACAATTGT 59.621 39.130 4.92 4.92 46.75 2.71
154 155 3.958704 TCTTAACGCCACACAACAATTG 58.041 40.909 3.24 3.24 0.00 2.32
155 156 4.640789 TTCTTAACGCCACACAACAATT 57.359 36.364 0.00 0.00 0.00 2.32
156 157 4.336993 TCTTTCTTAACGCCACACAACAAT 59.663 37.500 0.00 0.00 0.00 2.71
157 158 3.690139 TCTTTCTTAACGCCACACAACAA 59.310 39.130 0.00 0.00 0.00 2.83
158 159 3.271729 TCTTTCTTAACGCCACACAACA 58.728 40.909 0.00 0.00 0.00 3.33
159 160 3.955771 TCTTTCTTAACGCCACACAAC 57.044 42.857 0.00 0.00 0.00 3.32
160 161 4.966965 TTTCTTTCTTAACGCCACACAA 57.033 36.364 0.00 0.00 0.00 3.33
161 162 5.163602 ACAATTTCTTTCTTAACGCCACACA 60.164 36.000 0.00 0.00 0.00 3.72
162 163 5.278604 ACAATTTCTTTCTTAACGCCACAC 58.721 37.500 0.00 0.00 0.00 3.82
163 164 5.508200 ACAATTTCTTTCTTAACGCCACA 57.492 34.783 0.00 0.00 0.00 4.17
164 165 5.115021 CGAACAATTTCTTTCTTAACGCCAC 59.885 40.000 0.00 0.00 0.00 5.01
165 166 5.007823 TCGAACAATTTCTTTCTTAACGCCA 59.992 36.000 0.00 0.00 0.00 5.69
166 167 5.445845 TCGAACAATTTCTTTCTTAACGCC 58.554 37.500 0.00 0.00 0.00 5.68
167 168 7.112984 ACAATCGAACAATTTCTTTCTTAACGC 59.887 33.333 0.00 0.00 0.00 4.84
168 169 8.488979 ACAATCGAACAATTTCTTTCTTAACG 57.511 30.769 0.00 0.00 0.00 3.18
215 216 9.359653 CCCATTAAAATCAGAGAGGTGATTAAT 57.640 33.333 0.00 0.00 44.72 1.40
216 217 7.779798 CCCCATTAAAATCAGAGAGGTGATTAA 59.220 37.037 0.00 0.00 44.72 1.40
217 218 7.091993 ACCCCATTAAAATCAGAGAGGTGATTA 60.092 37.037 0.00 0.00 44.72 1.75
218 219 6.131961 CCCCATTAAAATCAGAGAGGTGATT 58.868 40.000 0.00 0.00 46.94 2.57
219 220 5.194537 ACCCCATTAAAATCAGAGAGGTGAT 59.805 40.000 0.00 0.00 38.91 3.06
220 221 4.540099 ACCCCATTAAAATCAGAGAGGTGA 59.460 41.667 0.00 0.00 0.00 4.02
221 222 4.641989 CACCCCATTAAAATCAGAGAGGTG 59.358 45.833 0.00 0.00 35.54 4.00
222 223 4.325344 CCACCCCATTAAAATCAGAGAGGT 60.325 45.833 0.00 0.00 0.00 3.85
223 224 4.210331 CCACCCCATTAAAATCAGAGAGG 58.790 47.826 0.00 0.00 0.00 3.69
224 225 4.210331 CCCACCCCATTAAAATCAGAGAG 58.790 47.826 0.00 0.00 0.00 3.20
225 226 3.627237 GCCCACCCCATTAAAATCAGAGA 60.627 47.826 0.00 0.00 0.00 3.10
226 227 2.695147 GCCCACCCCATTAAAATCAGAG 59.305 50.000 0.00 0.00 0.00 3.35
227 228 2.625617 GGCCCACCCCATTAAAATCAGA 60.626 50.000 0.00 0.00 0.00 3.27
228 229 1.762370 GGCCCACCCCATTAAAATCAG 59.238 52.381 0.00 0.00 0.00 2.90
229 230 1.364328 AGGCCCACCCCATTAAAATCA 59.636 47.619 0.00 0.00 36.11 2.57
230 231 1.762370 CAGGCCCACCCCATTAAAATC 59.238 52.381 0.00 0.00 36.11 2.17
231 232 1.624949 CCAGGCCCACCCCATTAAAAT 60.625 52.381 0.00 0.00 36.11 1.82
232 233 0.252467 CCAGGCCCACCCCATTAAAA 60.252 55.000 0.00 0.00 36.11 1.52
233 234 1.390125 CCAGGCCCACCCCATTAAA 59.610 57.895 0.00 0.00 36.11 1.52
234 235 2.631525 CCCAGGCCCACCCCATTAA 61.632 63.158 0.00 0.00 36.11 1.40
235 236 3.026847 CCCAGGCCCACCCCATTA 61.027 66.667 0.00 0.00 36.11 1.90
240 241 1.655114 ATAATGTCCCAGGCCCACCC 61.655 60.000 0.00 0.00 36.11 4.61
241 242 0.261696 AATAATGTCCCAGGCCCACC 59.738 55.000 0.00 0.00 0.00 4.61
242 243 1.756538 CAAATAATGTCCCAGGCCCAC 59.243 52.381 0.00 0.00 0.00 4.61
243 244 1.964344 GCAAATAATGTCCCAGGCCCA 60.964 52.381 0.00 0.00 0.00 5.36
244 245 0.752658 GCAAATAATGTCCCAGGCCC 59.247 55.000 0.00 0.00 0.00 5.80
245 246 1.780503 AGCAAATAATGTCCCAGGCC 58.219 50.000 0.00 0.00 0.00 5.19
246 247 2.101415 GGAAGCAAATAATGTCCCAGGC 59.899 50.000 0.00 0.00 0.00 4.85
247 248 3.364549 TGGAAGCAAATAATGTCCCAGG 58.635 45.455 0.00 0.00 0.00 4.45
248 249 4.381932 GGTTGGAAGCAAATAATGTCCCAG 60.382 45.833 0.00 0.00 0.00 4.45
249 250 3.513515 GGTTGGAAGCAAATAATGTCCCA 59.486 43.478 0.00 0.00 0.00 4.37
250 251 3.513515 TGGTTGGAAGCAAATAATGTCCC 59.486 43.478 0.00 0.00 32.80 4.46
251 252 4.462483 TCTGGTTGGAAGCAAATAATGTCC 59.538 41.667 0.00 0.00 35.79 4.02
252 253 5.643379 TCTGGTTGGAAGCAAATAATGTC 57.357 39.130 0.00 0.00 35.79 3.06
253 254 5.954150 AGATCTGGTTGGAAGCAAATAATGT 59.046 36.000 0.00 0.00 35.79 2.71
254 255 6.461110 AGATCTGGTTGGAAGCAAATAATG 57.539 37.500 0.00 0.00 35.79 1.90
255 256 6.264067 GCTAGATCTGGTTGGAAGCAAATAAT 59.736 38.462 5.18 0.00 35.79 1.28
256 257 5.590259 GCTAGATCTGGTTGGAAGCAAATAA 59.410 40.000 5.18 0.00 35.79 1.40
257 258 5.126067 GCTAGATCTGGTTGGAAGCAAATA 58.874 41.667 5.18 0.00 35.79 1.40
258 259 3.950395 GCTAGATCTGGTTGGAAGCAAAT 59.050 43.478 5.18 0.00 35.79 2.32
259 260 3.347216 GCTAGATCTGGTTGGAAGCAAA 58.653 45.455 5.18 0.00 35.79 3.68
260 261 2.356125 GGCTAGATCTGGTTGGAAGCAA 60.356 50.000 5.18 0.00 35.79 3.91
261 262 1.210478 GGCTAGATCTGGTTGGAAGCA 59.790 52.381 5.18 0.00 34.85 3.91
262 263 1.210478 TGGCTAGATCTGGTTGGAAGC 59.790 52.381 5.18 4.05 0.00 3.86
263 264 2.739932 CGTGGCTAGATCTGGTTGGAAG 60.740 54.545 5.18 0.00 0.00 3.46
264 265 1.207089 CGTGGCTAGATCTGGTTGGAA 59.793 52.381 5.18 0.00 0.00 3.53
265 266 0.824109 CGTGGCTAGATCTGGTTGGA 59.176 55.000 5.18 0.00 0.00 3.53
266 267 0.537188 ACGTGGCTAGATCTGGTTGG 59.463 55.000 5.18 0.00 0.00 3.77
267 268 1.204704 TCACGTGGCTAGATCTGGTTG 59.795 52.381 17.00 0.00 0.00 3.77
268 269 1.478510 CTCACGTGGCTAGATCTGGTT 59.521 52.381 17.00 0.00 0.00 3.67
269 270 1.107114 CTCACGTGGCTAGATCTGGT 58.893 55.000 17.00 0.00 0.00 4.00
270 271 0.249238 GCTCACGTGGCTAGATCTGG 60.249 60.000 17.00 2.94 0.00 3.86
271 272 0.743688 AGCTCACGTGGCTAGATCTG 59.256 55.000 24.18 0.00 38.36 2.90
272 273 1.028905 GAGCTCACGTGGCTAGATCT 58.971 55.000 25.06 0.00 40.40 2.75
273 274 0.317436 CGAGCTCACGTGGCTAGATC 60.317 60.000 25.06 17.93 40.40 2.75
274 275 1.032657 ACGAGCTCACGTGGCTAGAT 61.033 55.000 30.46 16.85 44.84 1.98
275 276 1.674651 ACGAGCTCACGTGGCTAGA 60.675 57.895 30.46 9.34 44.84 2.43
276 277 2.878429 ACGAGCTCACGTGGCTAG 59.122 61.111 25.06 25.40 44.84 3.42
283 284 0.388649 AACTTAGGCACGAGCTCACG 60.389 55.000 15.40 3.56 41.70 4.35
284 285 1.727335 GAAACTTAGGCACGAGCTCAC 59.273 52.381 15.40 1.92 41.70 3.51
285 286 1.668919 CGAAACTTAGGCACGAGCTCA 60.669 52.381 15.40 0.00 41.70 4.26
286 287 0.992802 CGAAACTTAGGCACGAGCTC 59.007 55.000 2.73 2.73 41.70 4.09
287 288 0.317479 ACGAAACTTAGGCACGAGCT 59.683 50.000 4.48 0.00 41.70 4.09
288 289 1.986698 TACGAAACTTAGGCACGAGC 58.013 50.000 0.00 0.00 41.10 5.03
289 290 4.203764 CGTATTACGAAACTTAGGCACGAG 59.796 45.833 10.70 0.00 46.05 4.18
290 291 4.097714 CGTATTACGAAACTTAGGCACGA 58.902 43.478 10.70 0.00 46.05 4.35
291 292 3.853671 ACGTATTACGAAACTTAGGCACG 59.146 43.478 22.18 0.00 46.05 5.34
292 293 6.258160 TCTACGTATTACGAAACTTAGGCAC 58.742 40.000 22.18 0.00 46.05 5.01
293 294 6.435430 TCTACGTATTACGAAACTTAGGCA 57.565 37.500 22.18 0.00 46.05 4.75
294 295 6.914757 ACATCTACGTATTACGAAACTTAGGC 59.085 38.462 22.18 0.00 46.05 3.93
295 296 9.591404 CTACATCTACGTATTACGAAACTTAGG 57.409 37.037 22.18 6.17 46.05 2.69
296 297 9.100895 GCTACATCTACGTATTACGAAACTTAG 57.899 37.037 22.18 12.51 46.05 2.18
297 298 8.611757 TGCTACATCTACGTATTACGAAACTTA 58.388 33.333 22.18 3.62 46.05 2.24
298 299 7.475015 TGCTACATCTACGTATTACGAAACTT 58.525 34.615 22.18 2.58 46.05 2.66
299 300 7.019774 TGCTACATCTACGTATTACGAAACT 57.980 36.000 22.18 2.95 46.05 2.66
300 301 7.669438 TTGCTACATCTACGTATTACGAAAC 57.331 36.000 22.18 2.77 46.05 2.78
301 302 7.043854 GCTTTGCTACATCTACGTATTACGAAA 60.044 37.037 22.18 9.10 46.05 3.46
302 303 6.415867 GCTTTGCTACATCTACGTATTACGAA 59.584 38.462 22.18 7.98 46.05 3.85
303 304 5.911280 GCTTTGCTACATCTACGTATTACGA 59.089 40.000 22.18 5.83 46.05 3.43
304 305 5.913514 AGCTTTGCTACATCTACGTATTACG 59.086 40.000 14.41 14.41 42.16 3.18
305 306 6.916387 TGAGCTTTGCTACATCTACGTATTAC 59.084 38.462 0.00 0.00 39.88 1.89
306 307 7.034685 TGAGCTTTGCTACATCTACGTATTA 57.965 36.000 0.00 0.00 39.88 0.98
307 308 5.902681 TGAGCTTTGCTACATCTACGTATT 58.097 37.500 0.00 0.00 39.88 1.89
308 309 5.515797 TGAGCTTTGCTACATCTACGTAT 57.484 39.130 0.00 0.00 39.88 3.06
309 310 4.976224 TGAGCTTTGCTACATCTACGTA 57.024 40.909 0.00 0.00 39.88 3.57
310 311 3.868757 TGAGCTTTGCTACATCTACGT 57.131 42.857 0.00 0.00 39.88 3.57
311 312 4.026228 CACATGAGCTTTGCTACATCTACG 60.026 45.833 0.00 0.00 39.88 3.51
312 313 5.111989 TCACATGAGCTTTGCTACATCTAC 58.888 41.667 0.00 0.00 39.88 2.59
313 314 5.343307 TCACATGAGCTTTGCTACATCTA 57.657 39.130 0.00 0.00 39.88 1.98
314 315 4.212143 TCACATGAGCTTTGCTACATCT 57.788 40.909 0.00 0.00 39.88 2.90
315 316 4.952262 TTCACATGAGCTTTGCTACATC 57.048 40.909 0.00 0.00 39.88 3.06
316 317 4.157289 CCTTTCACATGAGCTTTGCTACAT 59.843 41.667 0.00 0.00 39.88 2.29
317 318 3.503363 CCTTTCACATGAGCTTTGCTACA 59.497 43.478 0.00 0.00 39.88 2.74
318 319 3.503748 ACCTTTCACATGAGCTTTGCTAC 59.496 43.478 0.00 0.00 39.88 3.58
319 320 3.503363 CACCTTTCACATGAGCTTTGCTA 59.497 43.478 0.00 0.00 39.88 3.49
320 321 2.295349 CACCTTTCACATGAGCTTTGCT 59.705 45.455 0.00 0.00 43.88 3.91
321 322 2.669364 CACCTTTCACATGAGCTTTGC 58.331 47.619 0.00 0.00 0.00 3.68
322 323 2.608752 GGCACCTTTCACATGAGCTTTG 60.609 50.000 0.00 0.00 0.00 2.77
323 324 1.615392 GGCACCTTTCACATGAGCTTT 59.385 47.619 0.00 0.00 0.00 3.51
324 325 1.251251 GGCACCTTTCACATGAGCTT 58.749 50.000 0.00 0.00 0.00 3.74
325 326 0.957395 CGGCACCTTTCACATGAGCT 60.957 55.000 0.00 0.00 0.00 4.09
326 327 1.237285 ACGGCACCTTTCACATGAGC 61.237 55.000 0.00 0.00 0.00 4.26
327 328 2.002586 CTACGGCACCTTTCACATGAG 58.997 52.381 0.00 0.00 0.00 2.90
328 329 1.346395 ACTACGGCACCTTTCACATGA 59.654 47.619 0.00 0.00 0.00 3.07
329 330 1.808411 ACTACGGCACCTTTCACATG 58.192 50.000 0.00 0.00 0.00 3.21
330 331 2.565834 AGTACTACGGCACCTTTCACAT 59.434 45.455 0.00 0.00 0.00 3.21
331 332 1.965643 AGTACTACGGCACCTTTCACA 59.034 47.619 0.00 0.00 0.00 3.58
332 333 2.738013 AGTACTACGGCACCTTTCAC 57.262 50.000 0.00 0.00 0.00 3.18
333 334 2.165030 GCTAGTACTACGGCACCTTTCA 59.835 50.000 8.79 0.00 0.00 2.69
334 335 2.165030 TGCTAGTACTACGGCACCTTTC 59.835 50.000 11.65 0.00 30.01 2.62
335 336 2.094338 GTGCTAGTACTACGGCACCTTT 60.094 50.000 25.81 0.00 42.29 3.11
336 337 1.475682 GTGCTAGTACTACGGCACCTT 59.524 52.381 25.81 0.00 42.29 3.50
337 338 1.101331 GTGCTAGTACTACGGCACCT 58.899 55.000 25.81 0.00 42.29 4.00
338 339 0.248377 CGTGCTAGTACTACGGCACC 60.248 60.000 28.11 17.22 43.79 5.01
339 340 0.449388 ACGTGCTAGTACTACGGCAC 59.551 55.000 26.11 26.11 43.51 5.01
340 341 1.665679 GTACGTGCTAGTACTACGGCA 59.334 52.381 18.21 15.04 42.58 5.69
341 342 1.003438 GGTACGTGCTAGTACTACGGC 60.003 57.143 18.21 12.88 44.59 5.68
342 343 2.030946 GTGGTACGTGCTAGTACTACGG 59.969 54.545 18.21 3.62 44.74 4.02
343 344 3.310303 GTGGTACGTGCTAGTACTACG 57.690 52.381 13.71 13.71 44.74 3.51
345 346 2.679837 GCAGTGGTACGTGCTAGTACTA 59.320 50.000 17.33 1.89 44.59 1.82
346 347 1.471684 GCAGTGGTACGTGCTAGTACT 59.528 52.381 17.33 0.00 44.59 2.73
347 348 1.468736 GGCAGTGGTACGTGCTAGTAC 60.469 57.143 3.01 11.97 44.50 2.73
348 349 0.813184 GGCAGTGGTACGTGCTAGTA 59.187 55.000 3.01 0.00 39.76 1.82
349 350 1.183030 TGGCAGTGGTACGTGCTAGT 61.183 55.000 3.01 0.00 39.76 2.57
350 351 0.736325 GTGGCAGTGGTACGTGCTAG 60.736 60.000 3.01 0.00 39.76 3.42
351 352 1.290955 GTGGCAGTGGTACGTGCTA 59.709 57.895 3.01 0.00 39.76 3.49
352 353 2.030562 GTGGCAGTGGTACGTGCT 59.969 61.111 3.01 0.00 39.76 4.40
353 354 3.411351 CGTGGCAGTGGTACGTGC 61.411 66.667 0.00 0.00 39.08 5.34
354 355 3.411351 GCGTGGCAGTGGTACGTG 61.411 66.667 0.00 0.00 39.79 4.49
356 357 4.710695 TCGCGTGGCAGTGGTACG 62.711 66.667 5.77 0.00 40.52 3.67
357 358 2.809601 CTCGCGTGGCAGTGGTAC 60.810 66.667 5.77 0.00 0.00 3.34
358 359 4.063967 CCTCGCGTGGCAGTGGTA 62.064 66.667 15.08 0.00 0.00 3.25
425 744 3.179265 CGTGCGCGGTGTAGGAAG 61.179 66.667 12.87 0.00 0.00 3.46
426 745 2.139888 TAACGTGCGCGGTGTAGGAA 62.140 55.000 22.57 0.00 43.45 3.36
444 763 0.036483 TCGAGCTGTGGCAAGCATTA 60.036 50.000 19.03 5.55 46.08 1.90
471 790 0.392998 ATGCGAATATCATCCCGGCC 60.393 55.000 0.00 0.00 0.00 6.13
556 878 0.389037 GTGACTGAGATGAGTGCGCA 60.389 55.000 5.66 5.66 0.00 6.09
590 916 2.504681 GCATGCTGAAAACGGGCG 60.505 61.111 11.37 0.00 0.00 6.13
605 931 0.604073 TCGTATCTTTCACGGTGGCA 59.396 50.000 8.50 0.00 39.82 4.92
744 1070 2.919856 CAGCGGGGGATCGGATCT 60.920 66.667 16.96 0.00 0.00 2.75
1072 1424 4.473520 CTGGCCGCCGGTCTTCAT 62.474 66.667 10.05 0.00 0.00 2.57
1350 1705 1.270907 AATGCCCAATGCCGGTTAAA 58.729 45.000 1.90 0.00 40.16 1.52
1365 1720 2.161609 CCACTCCCAGTTAACGAAATGC 59.838 50.000 0.00 0.00 29.12 3.56
1398 1754 2.487934 CTGTTGTCTGAACAGTCCCAG 58.512 52.381 6.42 0.00 41.90 4.45
1413 1769 1.346395 TGTGGGTACTGGTAGCTGTTG 59.654 52.381 9.83 0.00 34.26 3.33
1414 1770 1.346722 GTGTGGGTACTGGTAGCTGTT 59.653 52.381 9.83 0.00 34.26 3.16
1415 1771 0.974383 GTGTGGGTACTGGTAGCTGT 59.026 55.000 9.49 9.49 34.26 4.40
1419 1775 1.542492 ACTCGTGTGGGTACTGGTAG 58.458 55.000 0.00 0.00 0.00 3.18
1420 1776 1.888512 GAACTCGTGTGGGTACTGGTA 59.111 52.381 0.00 0.00 0.00 3.25
1444 1808 7.362401 CCAAAATTCACTCTAGGAATGACAAGG 60.362 40.741 0.00 0.00 35.28 3.61
1447 1811 6.542821 ACCAAAATTCACTCTAGGAATGACA 58.457 36.000 0.00 0.00 35.28 3.58
1470 1834 3.974871 TTTACCCGTTGCTTTCTGAAC 57.025 42.857 0.00 0.00 0.00 3.18
1498 1862 7.986889 ACAAGTCATTTTCACCTTAATTTGCTT 59.013 29.630 0.00 0.00 0.00 3.91
1503 1867 8.264347 ACCAAACAAGTCATTTTCACCTTAATT 58.736 29.630 0.00 0.00 0.00 1.40
1564 1940 3.565482 TGCTTCTGAATCCACACTTGTTC 59.435 43.478 0.00 0.00 0.00 3.18
1586 1962 1.815421 CCAATCGGCTAAGCTGCGT 60.815 57.895 0.00 0.00 34.49 5.24
1588 1964 1.153168 TCCCAATCGGCTAAGCTGC 60.153 57.895 0.00 0.00 34.49 5.25
1589 1965 0.533755 CCTCCCAATCGGCTAAGCTG 60.534 60.000 0.00 0.00 36.06 4.24
1590 1966 0.983378 ACCTCCCAATCGGCTAAGCT 60.983 55.000 0.00 0.00 0.00 3.74
1591 1967 0.107165 AACCTCCCAATCGGCTAAGC 60.107 55.000 0.00 0.00 0.00 3.09
1592 1968 3.118371 AGTTAACCTCCCAATCGGCTAAG 60.118 47.826 0.88 0.00 0.00 2.18
1593 1969 2.841881 AGTTAACCTCCCAATCGGCTAA 59.158 45.455 0.88 0.00 0.00 3.09
1594 1970 2.169769 CAGTTAACCTCCCAATCGGCTA 59.830 50.000 0.88 0.00 0.00 3.93
1595 1971 1.065418 CAGTTAACCTCCCAATCGGCT 60.065 52.381 0.88 0.00 0.00 5.52
1660 2036 9.975218 ACCCAGTTTAATTCATCAATTACTACT 57.025 29.630 0.00 0.00 34.73 2.57
1681 2057 3.592059 CCAATTCATTGCAGAAACCCAG 58.408 45.455 0.00 0.00 36.48 4.45
1689 2065 1.519898 GCGCCCCAATTCATTGCAG 60.520 57.895 0.00 0.00 36.48 4.41
1714 2093 7.081349 GCAGATCTGTGTATAGCTACTTGTAG 58.919 42.308 23.38 3.60 0.00 2.74
1718 2097 4.022762 CGGCAGATCTGTGTATAGCTACTT 60.023 45.833 23.38 0.00 0.00 2.24
1756 2135 6.468543 TGCTTTAGGACATGTACATACACAA 58.531 36.000 11.55 1.77 39.30 3.33
1832 2211 6.223852 ACGATGCTCTCTCTGTTTTTCTTAA 58.776 36.000 0.00 0.00 0.00 1.85
1836 2215 3.369451 GGACGATGCTCTCTCTGTTTTTC 59.631 47.826 0.00 0.00 0.00 2.29
1842 2221 1.334556 CAGAGGACGATGCTCTCTCTG 59.665 57.143 6.16 0.00 41.57 3.35
1862 2246 2.936498 ACATCACGTATTAACTGCTGGC 59.064 45.455 0.00 0.00 0.00 4.85
1865 2249 5.805486 CACTGTACATCACGTATTAACTGCT 59.195 40.000 0.00 0.00 31.20 4.24
1874 2258 4.787260 TTAAGCCACTGTACATCACGTA 57.213 40.909 0.00 0.00 0.00 3.57
1877 2261 7.333423 TGACTTAATTAAGCCACTGTACATCAC 59.667 37.037 22.45 0.00 36.79 3.06
1942 2326 6.751888 CACCATGAACGTTTCTTCTTCTTTTT 59.248 34.615 0.46 0.00 0.00 1.94
1943 2327 6.094881 TCACCATGAACGTTTCTTCTTCTTTT 59.905 34.615 0.46 0.00 0.00 2.27
1944 2328 5.588648 TCACCATGAACGTTTCTTCTTCTTT 59.411 36.000 0.46 0.00 0.00 2.52
1945 2329 5.123227 TCACCATGAACGTTTCTTCTTCTT 58.877 37.500 0.46 0.00 0.00 2.52
1946 2330 4.703897 TCACCATGAACGTTTCTTCTTCT 58.296 39.130 0.46 0.00 0.00 2.85
1947 2331 5.205565 GTTCACCATGAACGTTTCTTCTTC 58.794 41.667 0.46 0.00 45.88 2.87
1948 2332 5.169836 GTTCACCATGAACGTTTCTTCTT 57.830 39.130 0.46 0.00 45.88 2.52
1949 2333 4.813296 GTTCACCATGAACGTTTCTTCT 57.187 40.909 0.46 0.00 45.88 2.85
2043 2427 9.486497 GAATAATGCAGAATTCAGACTCTATCA 57.514 33.333 15.44 0.00 33.26 2.15
2055 2439 6.656902 TCTGTCTCCTGAATAATGCAGAATT 58.343 36.000 0.00 0.00 35.39 2.17
2083 2467 5.710099 TCCTCAAAACGGCAGAATAATTTCT 59.290 36.000 0.00 0.00 43.09 2.52
2127 2511 9.356433 CTAGTTCACATGATTAGATATGCTCAG 57.644 37.037 0.00 0.00 0.00 3.35
2128 2512 7.816513 GCTAGTTCACATGATTAGATATGCTCA 59.183 37.037 0.00 0.00 0.00 4.26
2190 2599 8.438676 AATACAGTATTCAGATGGTGTTTAGC 57.561 34.615 0.00 0.00 0.00 3.09
2237 2650 1.271001 TGTGGCCTGATGAACACAGAG 60.271 52.381 3.32 0.00 38.76 3.35
2243 2656 2.681848 CAGATTCTGTGGCCTGATGAAC 59.318 50.000 3.32 0.00 0.00 3.18
2247 2660 1.588239 TCCAGATTCTGTGGCCTGAT 58.412 50.000 12.54 0.00 34.77 2.90
2286 2699 4.202121 ACGTGGACACCATGACTACATATC 60.202 45.833 15.60 0.00 42.73 1.63
2622 3045 1.848388 TGCATGTCAGGAAGGATGGAT 59.152 47.619 0.00 0.00 0.00 3.41
2623 3046 1.288188 TGCATGTCAGGAAGGATGGA 58.712 50.000 0.00 0.00 0.00 3.41
2624 3047 1.954382 CATGCATGTCAGGAAGGATGG 59.046 52.381 18.91 0.00 0.00 3.51
2664 3087 1.206849 TCGATGTACAGGCTGCATTCA 59.793 47.619 15.89 9.04 0.00 2.57
3081 3506 1.617850 ACGCCATCTGATCAGATCCTC 59.382 52.381 31.15 21.38 45.78 3.71
3125 3555 1.145325 AGCGTACCCTCTACAGCCTAT 59.855 52.381 0.00 0.00 0.00 2.57
3131 3561 2.490903 GAGACAAAGCGTACCCTCTACA 59.509 50.000 0.00 0.00 0.00 2.74
3138 3568 1.058404 GTCACGAGACAAAGCGTACC 58.942 55.000 8.20 0.00 44.34 3.34
3166 3602 0.977108 TGGCAGCAAATCCAATCCCC 60.977 55.000 0.00 0.00 0.00 4.81
3200 3636 4.216257 CCGATCATGTTTTTCCACAGAAGT 59.784 41.667 0.00 0.00 32.35 3.01
3225 3670 4.213482 ACAAGAAACTGCGACCTACAATTC 59.787 41.667 0.00 0.00 0.00 2.17
3254 3699 1.704641 GAAAAGGGGCAAACTCAGGT 58.295 50.000 0.00 0.00 0.00 4.00
3259 3704 3.620427 AAAAACGAAAAGGGGCAAACT 57.380 38.095 0.00 0.00 0.00 2.66
3280 3726 2.614481 GCAATAGTCACGAGTGGGGAAA 60.614 50.000 3.19 0.00 0.00 3.13
3283 3729 0.462047 GGCAATAGTCACGAGTGGGG 60.462 60.000 3.19 0.00 0.00 4.96
3298 3744 1.038681 TCGGTGATAGTAGCCGGCAA 61.039 55.000 31.54 11.54 44.97 4.52
3299 3745 1.452953 CTCGGTGATAGTAGCCGGCA 61.453 60.000 31.54 12.31 44.97 5.69
3302 3748 1.286260 GGCTCGGTGATAGTAGCCG 59.714 63.158 0.00 0.00 44.63 5.52
3304 3750 0.032267 GTGGGCTCGGTGATAGTAGC 59.968 60.000 0.00 0.00 0.00 3.58
3305 3751 0.311165 CGTGGGCTCGGTGATAGTAG 59.689 60.000 0.00 0.00 0.00 2.57
3306 3752 1.105167 CCGTGGGCTCGGTGATAGTA 61.105 60.000 12.02 0.00 44.77 1.82
3307 3753 2.423898 CCGTGGGCTCGGTGATAGT 61.424 63.158 12.02 0.00 44.77 2.12
3308 3754 2.417516 CCGTGGGCTCGGTGATAG 59.582 66.667 12.02 0.00 44.77 2.08
3315 3761 1.672854 TAGGTGAATCCGTGGGCTCG 61.673 60.000 0.00 0.00 41.99 5.03
3316 3762 0.105039 CTAGGTGAATCCGTGGGCTC 59.895 60.000 0.00 0.00 41.99 4.70
3317 3763 1.972660 GCTAGGTGAATCCGTGGGCT 61.973 60.000 0.00 0.00 41.99 5.19
3318 3764 1.523938 GCTAGGTGAATCCGTGGGC 60.524 63.158 0.00 0.00 41.99 5.36
3319 3765 1.146263 GGCTAGGTGAATCCGTGGG 59.854 63.158 0.00 0.00 41.99 4.61
3320 3766 0.105039 GAGGCTAGGTGAATCCGTGG 59.895 60.000 0.00 0.00 41.99 4.94
3321 3767 1.115467 AGAGGCTAGGTGAATCCGTG 58.885 55.000 0.00 0.00 41.99 4.94
3322 3768 1.757699 GAAGAGGCTAGGTGAATCCGT 59.242 52.381 0.00 0.00 41.99 4.69
3323 3769 1.069358 GGAAGAGGCTAGGTGAATCCG 59.931 57.143 0.00 0.00 41.99 4.18
3324 3770 2.103941 CAGGAAGAGGCTAGGTGAATCC 59.896 54.545 0.00 0.00 0.00 3.01
3325 3771 2.484594 GCAGGAAGAGGCTAGGTGAATC 60.485 54.545 0.00 0.00 0.00 2.52
3326 3772 1.488393 GCAGGAAGAGGCTAGGTGAAT 59.512 52.381 0.00 0.00 0.00 2.57
3327 3773 0.905357 GCAGGAAGAGGCTAGGTGAA 59.095 55.000 0.00 0.00 0.00 3.18
3328 3774 0.978146 GGCAGGAAGAGGCTAGGTGA 60.978 60.000 0.00 0.00 0.00 4.02
3329 3775 1.524482 GGCAGGAAGAGGCTAGGTG 59.476 63.158 0.00 0.00 0.00 4.00
3330 3776 2.060980 CGGCAGGAAGAGGCTAGGT 61.061 63.158 0.00 0.00 0.00 3.08
3331 3777 2.818132 CGGCAGGAAGAGGCTAGG 59.182 66.667 0.00 0.00 0.00 3.02
3332 3778 2.107953 GCGGCAGGAAGAGGCTAG 59.892 66.667 0.00 0.00 0.00 3.42
3333 3779 2.364317 AGCGGCAGGAAGAGGCTA 60.364 61.111 1.45 0.00 31.03 3.93
3334 3780 3.780173 GAGCGGCAGGAAGAGGCT 61.780 66.667 1.45 0.00 36.51 4.58
3335 3781 4.087892 TGAGCGGCAGGAAGAGGC 62.088 66.667 1.45 0.00 0.00 4.70
3336 3782 2.186384 CTGAGCGGCAGGAAGAGG 59.814 66.667 1.45 0.00 41.07 3.69
3360 3806 4.754667 GTCGTCCTCCCCGCCAAC 62.755 72.222 0.00 0.00 0.00 3.77
3365 3811 3.760035 CTGTGGTCGTCCTCCCCG 61.760 72.222 0.00 0.00 34.23 5.73
3366 3812 2.603776 ACTGTGGTCGTCCTCCCC 60.604 66.667 0.00 0.00 34.23 4.81
3367 3813 2.657237 CACTGTGGTCGTCCTCCC 59.343 66.667 0.00 0.00 34.23 4.30
3368 3814 2.048127 GCACTGTGGTCGTCCTCC 60.048 66.667 10.21 0.00 34.23 4.30
3369 3815 0.667792 GAAGCACTGTGGTCGTCCTC 60.668 60.000 13.45 2.96 34.23 3.71
3370 3816 1.367840 GAAGCACTGTGGTCGTCCT 59.632 57.895 13.45 0.00 34.23 3.85
3371 3817 1.069090 TGAAGCACTGTGGTCGTCC 59.931 57.895 13.45 4.18 0.00 4.79
3372 3818 1.222115 GGTGAAGCACTGTGGTCGTC 61.222 60.000 13.45 8.70 34.40 4.20
3373 3819 1.227556 GGTGAAGCACTGTGGTCGT 60.228 57.895 13.45 0.00 34.40 4.34
3374 3820 0.946221 GAGGTGAAGCACTGTGGTCG 60.946 60.000 13.45 0.00 34.40 4.79
3375 3821 0.603975 GGAGGTGAAGCACTGTGGTC 60.604 60.000 13.45 7.59 34.40 4.02
3376 3822 1.344953 TGGAGGTGAAGCACTGTGGT 61.345 55.000 6.68 6.68 34.40 4.16
3377 3823 0.604780 CTGGAGGTGAAGCACTGTGG 60.605 60.000 10.21 0.00 34.40 4.17
3378 3824 1.233285 GCTGGAGGTGAAGCACTGTG 61.233 60.000 2.76 2.76 39.31 3.66
3379 3825 1.072159 GCTGGAGGTGAAGCACTGT 59.928 57.895 0.00 0.00 39.31 3.55
3380 3826 0.250640 AAGCTGGAGGTGAAGCACTG 60.251 55.000 0.00 0.00 42.06 3.66
3381 3827 0.475906 AAAGCTGGAGGTGAAGCACT 59.524 50.000 0.00 0.00 42.06 4.40
3382 3828 1.268079 GAAAAGCTGGAGGTGAAGCAC 59.732 52.381 0.00 0.00 42.06 4.40
3383 3829 1.143684 AGAAAAGCTGGAGGTGAAGCA 59.856 47.619 0.00 0.00 42.06 3.91
3384 3830 1.902938 AGAAAAGCTGGAGGTGAAGC 58.097 50.000 0.00 0.00 39.82 3.86
3385 3831 4.500375 CCAAAAGAAAAGCTGGAGGTGAAG 60.500 45.833 0.00 0.00 0.00 3.02
3386 3832 3.384467 CCAAAAGAAAAGCTGGAGGTGAA 59.616 43.478 0.00 0.00 0.00 3.18
3387 3833 2.958355 CCAAAAGAAAAGCTGGAGGTGA 59.042 45.455 0.00 0.00 0.00 4.02
3388 3834 2.036346 CCCAAAAGAAAAGCTGGAGGTG 59.964 50.000 0.00 0.00 0.00 4.00
3389 3835 2.091333 TCCCAAAAGAAAAGCTGGAGGT 60.091 45.455 0.00 0.00 0.00 3.85
3390 3836 2.597455 TCCCAAAAGAAAAGCTGGAGG 58.403 47.619 0.00 0.00 0.00 4.30
3391 3837 4.502087 CCTTTCCCAAAAGAAAAGCTGGAG 60.502 45.833 0.00 0.00 43.90 3.86
3392 3838 3.387699 CCTTTCCCAAAAGAAAAGCTGGA 59.612 43.478 0.00 0.00 43.90 3.86
3393 3839 3.387699 TCCTTTCCCAAAAGAAAAGCTGG 59.612 43.478 0.00 0.00 43.90 4.85
3394 3840 4.502087 CCTCCTTTCCCAAAAGAAAAGCTG 60.502 45.833 0.00 0.00 43.90 4.24
3395 3841 3.643320 CCTCCTTTCCCAAAAGAAAAGCT 59.357 43.478 0.00 0.00 43.90 3.74
3396 3842 3.803715 GCCTCCTTTCCCAAAAGAAAAGC 60.804 47.826 0.00 0.00 43.90 3.51
3438 3884 1.153862 GGCCGCATGCATTTTTCGA 60.154 52.632 19.57 0.00 43.89 3.71
3444 3890 5.657826 TTAATAATATGGCCGCATGCATT 57.342 34.783 19.57 10.95 43.89 3.56
3486 3935 9.917129 TTTACGAGTTGTAATGAATCTAAGACA 57.083 29.630 3.75 0.00 42.45 3.41
3504 3953 4.510038 TTCTTTAGCTCCGTTTACGAGT 57.490 40.909 3.46 0.00 43.02 4.18
3533 3989 2.294791 CCGGTTGTGGCAATGAGTTTTA 59.705 45.455 0.00 0.00 0.00 1.52
3556 4012 5.477291 TCTCGTGATCTTGTCCTATTATCCC 59.523 44.000 0.00 0.00 0.00 3.85
3589 4047 5.116180 GTTTGGATGACGGTCTCATAATGA 58.884 41.667 9.88 0.00 39.96 2.57
3629 4087 2.769209 ACCAGTGGAAGAGGATAGCAT 58.231 47.619 18.40 0.00 0.00 3.79
3635 4093 0.108585 GTGCAACCAGTGGAAGAGGA 59.891 55.000 18.40 0.34 0.00 3.71
3637 4095 1.972872 AAGTGCAACCAGTGGAAGAG 58.027 50.000 18.40 3.34 37.80 2.85
3671 4129 2.820787 CTCACTCCTACGAACTTCAGGT 59.179 50.000 0.00 0.00 0.00 4.00
3676 4134 4.458642 GTCCTTACTCACTCCTACGAACTT 59.541 45.833 0.00 0.00 0.00 2.66
3680 4138 2.306805 TGGTCCTTACTCACTCCTACGA 59.693 50.000 0.00 0.00 0.00 3.43
3755 4214 7.062605 GGAACGATACGATCTTTAACAGACAAA 59.937 37.037 0.00 0.00 32.83 2.83
3772 4235 6.183360 GCTATATGGAATTGCAGGAACGATAC 60.183 42.308 5.69 0.00 0.00 2.24
3825 4288 9.956720 GTAGATCTTTTTACTACGGCTTGTATA 57.043 33.333 0.00 0.00 31.20 1.47
3836 4299 7.014422 GGCTAGCTGGAGTAGATCTTTTTACTA 59.986 40.741 15.72 0.00 30.58 1.82
3877 4340 2.005451 CTTCAGCTAGCATTGAAGCGT 58.995 47.619 25.19 0.00 42.48 5.07
3878 4341 1.329906 CCTTCAGCTAGCATTGAAGCG 59.670 52.381 28.65 21.33 45.60 4.68
3919 4382 4.670735 CGGAATTACTTTGGCGAACGATTT 60.671 41.667 0.00 0.00 0.00 2.17
4004 4469 0.950116 GACGATGGGTAGGTAGTCCG 59.050 60.000 0.00 0.00 39.05 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.