Multiple sequence alignment - TraesCS7B01G327200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G327200 chr7B 100.000 3065 0 0 1 3065 581332445 581335509 0.000000e+00 5661
1 TraesCS7B01G327200 chr7B 91.193 1283 65 32 827 2077 580970489 580969223 0.000000e+00 1700
2 TraesCS7B01G327200 chr7B 88.517 1376 97 32 739 2090 580885925 580884587 0.000000e+00 1609
3 TraesCS7B01G327200 chr7B 86.701 1361 106 38 739 2074 581313530 581314840 0.000000e+00 1441
4 TraesCS7B01G327200 chr7B 87.007 608 56 14 2480 3065 530021369 530021975 0.000000e+00 664
5 TraesCS7B01G327200 chr7B 87.918 538 52 10 2540 3065 88236499 88237035 3.360000e-174 621
6 TraesCS7B01G327200 chr7B 87.018 285 19 5 620 899 581326116 581326387 3.840000e-79 305
7 TraesCS7B01G327200 chr7A 84.939 2450 195 79 50 2405 620200552 620202921 0.000000e+00 2320
8 TraesCS7B01G327200 chr7A 85.761 1847 117 46 497 2273 620171133 620172903 0.000000e+00 1820
9 TraesCS7B01G327200 chr7A 86.194 1579 101 56 763 2273 619167194 619165665 0.000000e+00 1600
10 TraesCS7B01G327200 chr7A 90.385 832 45 19 763 1566 619576907 619576083 0.000000e+00 1061
11 TraesCS7B01G327200 chr7A 90.826 545 34 7 1633 2163 619576043 619575501 0.000000e+00 715
12 TraesCS7B01G327200 chr7A 90.566 318 24 3 1262 1574 620187016 620187332 1.700000e-112 416
13 TraesCS7B01G327200 chr7D 86.499 2111 163 52 392 2414 538661459 538663535 0.000000e+00 2207
14 TraesCS7B01G327200 chr7D 87.986 1465 109 46 739 2163 538141092 538139655 0.000000e+00 1668
15 TraesCS7B01G327200 chr7D 88.521 1359 87 37 242 1556 538594022 538595355 0.000000e+00 1581
16 TraesCS7B01G327200 chr7D 90.937 982 60 15 1125 2085 538333165 538332192 0.000000e+00 1293
17 TraesCS7B01G327200 chr7D 87.477 1086 92 21 998 2071 538212120 538211067 0.000000e+00 1212
18 TraesCS7B01G327200 chr7D 93.385 771 34 13 1312 2079 538602990 538603746 0.000000e+00 1125
19 TraesCS7B01G327200 chr7D 87.377 816 53 20 521 1309 538602169 538602961 0.000000e+00 891
20 TraesCS7B01G327200 chr7D 94.805 462 24 0 1607 2068 538595376 538595837 0.000000e+00 721
21 TraesCS7B01G327200 chr7D 84.800 375 28 19 597 945 538353832 538353461 1.750000e-92 350
22 TraesCS7B01G327200 chr7D 87.189 281 33 3 124 401 538660601 538660881 1.770000e-82 316
23 TraesCS7B01G327200 chr7D 88.018 217 18 4 1 214 538593829 538594040 1.820000e-62 250
24 TraesCS7B01G327200 chr7D 84.146 246 21 11 739 980 538240150 538239919 3.980000e-54 222
25 TraesCS7B01G327200 chr7D 95.238 126 6 0 1 126 538642235 538642360 1.860000e-47 200
26 TraesCS7B01G327200 chr7D 90.476 84 6 2 287 370 538601186 538601267 3.230000e-20 110
27 TraesCS7B01G327200 chr2B 89.533 535 46 7 2541 3065 333030583 333031117 0.000000e+00 669
28 TraesCS7B01G327200 chr2B 89.286 532 46 7 2545 3065 797746185 797745654 0.000000e+00 656
29 TraesCS7B01G327200 chr2B 89.286 532 46 7 2545 3065 798005725 798005194 0.000000e+00 656
30 TraesCS7B01G327200 chr2B 85.691 608 64 14 2480 3065 686039518 686038912 1.210000e-173 619
31 TraesCS7B01G327200 chr4B 85.997 607 64 12 2480 3065 436249262 436248656 5.580000e-177 630
32 TraesCS7B01G327200 chr3D 88.082 537 53 8 2540 3065 15260956 15260420 7.210000e-176 627
33 TraesCS7B01G327200 chr1D 87.337 537 57 8 2540 3065 412796478 412795942 3.380000e-169 604


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G327200 chr7B 581332445 581335509 3064 False 5661.000000 5661 100.000000 1 3065 1 chr7B.!!$F5 3064
1 TraesCS7B01G327200 chr7B 580969223 580970489 1266 True 1700.000000 1700 91.193000 827 2077 1 chr7B.!!$R2 1250
2 TraesCS7B01G327200 chr7B 580884587 580885925 1338 True 1609.000000 1609 88.517000 739 2090 1 chr7B.!!$R1 1351
3 TraesCS7B01G327200 chr7B 581313530 581314840 1310 False 1441.000000 1441 86.701000 739 2074 1 chr7B.!!$F3 1335
4 TraesCS7B01G327200 chr7B 530021369 530021975 606 False 664.000000 664 87.007000 2480 3065 1 chr7B.!!$F2 585
5 TraesCS7B01G327200 chr7B 88236499 88237035 536 False 621.000000 621 87.918000 2540 3065 1 chr7B.!!$F1 525
6 TraesCS7B01G327200 chr7A 620200552 620202921 2369 False 2320.000000 2320 84.939000 50 2405 1 chr7A.!!$F3 2355
7 TraesCS7B01G327200 chr7A 620171133 620172903 1770 False 1820.000000 1820 85.761000 497 2273 1 chr7A.!!$F1 1776
8 TraesCS7B01G327200 chr7A 619165665 619167194 1529 True 1600.000000 1600 86.194000 763 2273 1 chr7A.!!$R1 1510
9 TraesCS7B01G327200 chr7A 619575501 619576907 1406 True 888.000000 1061 90.605500 763 2163 2 chr7A.!!$R2 1400
10 TraesCS7B01G327200 chr7D 538139655 538141092 1437 True 1668.000000 1668 87.986000 739 2163 1 chr7D.!!$R1 1424
11 TraesCS7B01G327200 chr7D 538332192 538333165 973 True 1293.000000 1293 90.937000 1125 2085 1 chr7D.!!$R4 960
12 TraesCS7B01G327200 chr7D 538660601 538663535 2934 False 1261.500000 2207 86.844000 124 2414 2 chr7D.!!$F4 2290
13 TraesCS7B01G327200 chr7D 538211067 538212120 1053 True 1212.000000 1212 87.477000 998 2071 1 chr7D.!!$R2 1073
14 TraesCS7B01G327200 chr7D 538593829 538595837 2008 False 850.666667 1581 90.448000 1 2068 3 chr7D.!!$F2 2067
15 TraesCS7B01G327200 chr7D 538601186 538603746 2560 False 708.666667 1125 90.412667 287 2079 3 chr7D.!!$F3 1792
16 TraesCS7B01G327200 chr2B 333030583 333031117 534 False 669.000000 669 89.533000 2541 3065 1 chr2B.!!$F1 524
17 TraesCS7B01G327200 chr2B 797745654 797746185 531 True 656.000000 656 89.286000 2545 3065 1 chr2B.!!$R2 520
18 TraesCS7B01G327200 chr2B 798005194 798005725 531 True 656.000000 656 89.286000 2545 3065 1 chr2B.!!$R3 520
19 TraesCS7B01G327200 chr2B 686038912 686039518 606 True 619.000000 619 85.691000 2480 3065 1 chr2B.!!$R1 585
20 TraesCS7B01G327200 chr4B 436248656 436249262 606 True 630.000000 630 85.997000 2480 3065 1 chr4B.!!$R1 585
21 TraesCS7B01G327200 chr3D 15260420 15260956 536 True 627.000000 627 88.082000 2540 3065 1 chr3D.!!$R1 525
22 TraesCS7B01G327200 chr1D 412795942 412796478 536 True 604.000000 604 87.337000 2540 3065 1 chr1D.!!$R1 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
860 1810 0.03601 CCACGCTCATCTCCAAACCT 60.036 55.0 0.0 0.0 0.0 3.5 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2365 3525 0.036164 TTCCACTGACCGGGTGATTG 59.964 55.0 3.3 0.0 36.89 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.440253 AGCTAGTAGAGAGATGGGTCGT 59.560 50.000 0.00 0.00 0.00 4.34
42 43 3.367646 AGTAGAGAGATGGGTCGTTCA 57.632 47.619 0.00 0.00 0.00 3.18
129 130 5.221244 GGCACATGAATAAAGGGGTAATGAC 60.221 44.000 0.00 0.00 0.00 3.06
137 138 0.620700 AGGGGTAATGACCTTCCGCT 60.621 55.000 0.00 0.00 46.09 5.52
159 160 3.118920 TCGTTAAGGAAGCGATTGATCCA 60.119 43.478 0.00 0.00 35.62 3.41
193 199 6.146021 GCCATCATTTAAAAATATTCAGCCCG 59.854 38.462 0.00 0.00 0.00 6.13
218 224 2.514458 AGACAGCACCAAAATAGGGG 57.486 50.000 0.00 0.00 34.24 4.79
223 230 2.497273 CAGCACCAAAATAGGGGGAAAG 59.503 50.000 0.00 0.00 30.71 2.62
276 288 6.048509 ACACAAAAATCAACTGACCCAAATC 58.951 36.000 0.00 0.00 0.00 2.17
363 378 5.288804 TGAAAGAGGCACTTGCAAATAAAC 58.711 37.500 2.54 0.00 40.81 2.01
422 1296 7.553881 CCATGTGTTGGTACCTAAAGAATAG 57.446 40.000 14.36 0.00 40.99 1.73
451 1341 1.886542 GAAAAGGGATTGTCAAGCCGT 59.113 47.619 13.56 11.41 38.00 5.68
487 1377 2.279069 CCAGCTCGTCCTCCACAGT 61.279 63.158 0.00 0.00 0.00 3.55
489 1379 0.389166 CAGCTCGTCCTCCACAGTTC 60.389 60.000 0.00 0.00 0.00 3.01
491 1381 1.536943 GCTCGTCCTCCACAGTTCCT 61.537 60.000 0.00 0.00 0.00 3.36
552 1460 0.742281 CATCCCCTGCTCAAGTGTCG 60.742 60.000 0.00 0.00 0.00 4.35
617 1536 2.658285 CCATGGCTGCAAATTAGGAGA 58.342 47.619 0.00 0.00 0.00 3.71
618 1537 3.025978 CCATGGCTGCAAATTAGGAGAA 58.974 45.455 0.00 0.00 0.00 2.87
860 1810 0.036010 CCACGCTCATCTCCAAACCT 60.036 55.000 0.00 0.00 0.00 3.50
872 1823 8.798975 TCATCTCCAAACCTCTATATAAACCT 57.201 34.615 0.00 0.00 0.00 3.50
913 1864 4.142491 CCACTCACACAAACACAAAGCTTA 60.142 41.667 0.00 0.00 0.00 3.09
914 1865 5.030295 CACTCACACAAACACAAAGCTTAG 58.970 41.667 0.00 0.00 0.00 2.18
950 1916 4.442753 CCTCCTCATCAACCTTCTTCTAGC 60.443 50.000 0.00 0.00 0.00 3.42
951 1917 4.357325 TCCTCATCAACCTTCTTCTAGCT 58.643 43.478 0.00 0.00 0.00 3.32
953 1919 5.596361 TCCTCATCAACCTTCTTCTAGCTAG 59.404 44.000 15.01 15.01 0.00 3.42
954 1920 5.269505 TCATCAACCTTCTTCTAGCTAGC 57.730 43.478 16.35 6.62 0.00 3.42
955 1921 4.959210 TCATCAACCTTCTTCTAGCTAGCT 59.041 41.667 23.12 23.12 0.00 3.32
956 1922 6.129874 TCATCAACCTTCTTCTAGCTAGCTA 58.870 40.000 22.85 22.85 0.00 3.32
985 1961 4.345257 TCCAGTTGAGTGAGCTTACTTTCT 59.655 41.667 13.01 8.62 0.00 2.52
1995 3072 0.035056 GGTGGGTGCAGAGCAACTAT 60.035 55.000 7.01 0.00 46.64 2.12
2090 3169 1.571955 TGTCCATCCAGCAAGCTAGA 58.428 50.000 0.00 0.00 0.00 2.43
2109 3201 2.100749 AGACCATGCATACGTTGATCGA 59.899 45.455 0.00 0.00 42.86 3.59
2110 3202 3.059884 GACCATGCATACGTTGATCGAT 58.940 45.455 0.00 0.00 42.86 3.59
2111 3203 4.022329 AGACCATGCATACGTTGATCGATA 60.022 41.667 0.00 0.00 42.86 2.92
2129 3251 0.653397 TAGATGGGGAAGATGGGGGT 59.347 55.000 0.00 0.00 0.00 4.95
2146 3268 4.102524 TGGGGGTGTCTGTATTGTATGATC 59.897 45.833 0.00 0.00 0.00 2.92
2148 3270 5.300752 GGGGTGTCTGTATTGTATGATCAG 58.699 45.833 0.09 0.00 0.00 2.90
2206 3350 2.869801 CTGTTTGCTCCTTGTCACGTTA 59.130 45.455 0.00 0.00 0.00 3.18
2209 3353 3.955771 TTGCTCCTTGTCACGTTAAAC 57.044 42.857 0.00 0.00 0.00 2.01
2243 3396 2.440539 TGCCTCGTCTTGTTCTCTTC 57.559 50.000 0.00 0.00 0.00 2.87
2263 3416 6.054941 TCTTCTTCATGTGTTTGTTGCTCTA 58.945 36.000 0.00 0.00 0.00 2.43
2264 3417 5.673337 TCTTCATGTGTTTGTTGCTCTAC 57.327 39.130 0.00 0.00 0.00 2.59
2265 3418 5.368145 TCTTCATGTGTTTGTTGCTCTACT 58.632 37.500 0.00 0.00 0.00 2.57
2268 3421 5.820131 TCATGTGTTTGTTGCTCTACTTTG 58.180 37.500 0.00 0.00 0.00 2.77
2270 3423 3.181491 TGTGTTTGTTGCTCTACTTTGCC 60.181 43.478 0.00 0.00 0.00 4.52
2271 3424 3.020274 TGTTTGTTGCTCTACTTTGCCA 58.980 40.909 0.00 0.00 0.00 4.92
2272 3425 3.181491 TGTTTGTTGCTCTACTTTGCCAC 60.181 43.478 0.00 0.00 0.00 5.01
2273 3426 1.604604 TGTTGCTCTACTTTGCCACC 58.395 50.000 0.00 0.00 0.00 4.61
2275 3428 0.394938 TTGCTCTACTTTGCCACCGA 59.605 50.000 0.00 0.00 0.00 4.69
2301 3461 3.927854 TGGTTGGATTATTCGTTCGTGA 58.072 40.909 0.00 0.00 0.00 4.35
2306 3466 3.732219 TGGATTATTCGTTCGTGATACGC 59.268 43.478 0.00 0.00 42.21 4.42
2308 3468 4.088213 GGATTATTCGTTCGTGATACGCTC 59.912 45.833 0.00 0.00 42.21 5.03
2319 3479 0.994995 GATACGCTCACTGTGTGCTG 59.005 55.000 26.24 21.78 40.02 4.41
2321 3481 0.039165 TACGCTCACTGTGTGCTGAG 60.039 55.000 26.24 16.42 40.02 3.35
2324 3484 3.302375 CTCACTGTGTGCTGAGCTT 57.698 52.632 5.83 0.00 32.98 3.74
2333 3493 2.098280 GTGTGCTGAGCTTATCTCGAGA 59.902 50.000 19.19 19.19 44.86 4.04
2350 3510 1.072159 GACCTTGACCAGCAGCTGT 59.928 57.895 21.26 9.30 0.00 4.40
2355 3515 2.421424 CCTTGACCAGCAGCTGTTAATC 59.579 50.000 21.26 12.77 0.00 1.75
2357 3517 3.354948 TGACCAGCAGCTGTTAATCAT 57.645 42.857 21.26 0.00 0.00 2.45
2358 3518 3.273434 TGACCAGCAGCTGTTAATCATC 58.727 45.455 21.26 7.31 0.00 2.92
2360 3520 3.276857 ACCAGCAGCTGTTAATCATCTG 58.723 45.455 21.26 10.82 41.53 2.90
2361 3521 2.617308 CCAGCAGCTGTTAATCATCTGG 59.383 50.000 21.26 15.91 39.72 3.86
2362 3522 3.538591 CAGCAGCTGTTAATCATCTGGA 58.461 45.455 16.64 0.00 39.72 3.86
2364 3524 2.290093 GCAGCTGTTAATCATCTGGAGC 59.710 50.000 16.64 0.00 39.72 4.70
2365 3525 2.877168 CAGCTGTTAATCATCTGGAGCC 59.123 50.000 5.25 0.00 36.85 4.70
2367 3527 3.054139 AGCTGTTAATCATCTGGAGCCAA 60.054 43.478 0.00 0.00 0.00 4.52
2368 3528 3.887716 GCTGTTAATCATCTGGAGCCAAT 59.112 43.478 0.00 0.00 0.00 3.16
2370 3530 5.114764 TGTTAATCATCTGGAGCCAATCA 57.885 39.130 0.00 0.00 0.00 2.57
2373 3550 0.548031 TCATCTGGAGCCAATCACCC 59.452 55.000 0.00 0.00 0.00 4.61
2379 3556 1.450312 GAGCCAATCACCCGGTCAG 60.450 63.158 0.00 0.00 0.00 3.51
2381 3558 2.040544 GCCAATCACCCGGTCAGTG 61.041 63.158 0.00 1.12 36.54 3.66
2393 3570 2.094597 CCGGTCAGTGGAAACGTATGTA 60.095 50.000 0.00 0.00 0.00 2.29
2397 3574 5.232463 GGTCAGTGGAAACGTATGTAGAAA 58.768 41.667 0.00 0.00 0.00 2.52
2414 3591 4.592485 AGAAACTGATAGTGATAGGCCG 57.408 45.455 0.00 0.00 0.00 6.13
2415 3592 4.215908 AGAAACTGATAGTGATAGGCCGA 58.784 43.478 0.00 0.00 0.00 5.54
2416 3593 4.279671 AGAAACTGATAGTGATAGGCCGAG 59.720 45.833 0.00 0.00 0.00 4.63
2417 3594 1.889829 ACTGATAGTGATAGGCCGAGC 59.110 52.381 0.00 0.00 0.00 5.03
2427 3604 4.840005 GGCCGAGCCTACACTGCC 62.840 72.222 7.58 0.00 46.69 4.85
2428 3605 4.082523 GCCGAGCCTACACTGCCA 62.083 66.667 0.00 0.00 0.00 4.92
2429 3606 2.662596 CCGAGCCTACACTGCCAA 59.337 61.111 0.00 0.00 0.00 4.52
2430 3607 1.221840 CCGAGCCTACACTGCCAAT 59.778 57.895 0.00 0.00 0.00 3.16
2431 3608 0.464036 CCGAGCCTACACTGCCAATA 59.536 55.000 0.00 0.00 0.00 1.90
2432 3609 1.134521 CCGAGCCTACACTGCCAATAA 60.135 52.381 0.00 0.00 0.00 1.40
2433 3610 2.485479 CCGAGCCTACACTGCCAATAAT 60.485 50.000 0.00 0.00 0.00 1.28
2434 3611 3.206150 CGAGCCTACACTGCCAATAATT 58.794 45.455 0.00 0.00 0.00 1.40
2435 3612 4.377021 CGAGCCTACACTGCCAATAATTA 58.623 43.478 0.00 0.00 0.00 1.40
2436 3613 4.814234 CGAGCCTACACTGCCAATAATTAA 59.186 41.667 0.00 0.00 0.00 1.40
2437 3614 5.277345 CGAGCCTACACTGCCAATAATTAAC 60.277 44.000 0.00 0.00 0.00 2.01
2438 3615 4.887655 AGCCTACACTGCCAATAATTAACC 59.112 41.667 0.00 0.00 0.00 2.85
2439 3616 4.261031 GCCTACACTGCCAATAATTAACCG 60.261 45.833 0.00 0.00 0.00 4.44
2440 3617 4.274950 CCTACACTGCCAATAATTAACCGG 59.725 45.833 0.00 0.00 0.00 5.28
2441 3618 2.425668 ACACTGCCAATAATTAACCGGC 59.574 45.455 0.00 13.52 43.28 6.13
2442 3619 2.687935 CACTGCCAATAATTAACCGGCT 59.312 45.455 18.55 0.00 43.38 5.52
2443 3620 2.687935 ACTGCCAATAATTAACCGGCTG 59.312 45.455 19.56 19.56 43.38 4.85
2444 3621 2.028130 TGCCAATAATTAACCGGCTGG 58.972 47.619 11.02 11.02 43.38 4.85
2445 3622 2.303175 GCCAATAATTAACCGGCTGGA 58.697 47.619 21.41 0.00 39.73 3.86
2446 3623 2.034179 GCCAATAATTAACCGGCTGGAC 59.966 50.000 21.41 0.00 39.73 4.02
2447 3624 3.283751 CCAATAATTAACCGGCTGGACA 58.716 45.455 21.41 1.47 39.21 4.02
2448 3625 3.888930 CCAATAATTAACCGGCTGGACAT 59.111 43.478 21.41 6.54 39.21 3.06
2449 3626 4.261572 CCAATAATTAACCGGCTGGACATG 60.262 45.833 21.41 5.34 39.21 3.21
2450 3627 2.507407 AATTAACCGGCTGGACATGT 57.493 45.000 21.41 0.00 39.21 3.21
2451 3628 3.637911 AATTAACCGGCTGGACATGTA 57.362 42.857 21.41 0.00 39.21 2.29
2452 3629 3.637911 ATTAACCGGCTGGACATGTAA 57.362 42.857 21.41 8.53 39.21 2.41
2453 3630 2.389962 TAACCGGCTGGACATGTAAC 57.610 50.000 21.41 0.00 39.21 2.50
2454 3631 0.672401 AACCGGCTGGACATGTAACG 60.672 55.000 21.41 0.00 39.21 3.18
2455 3632 1.216977 CCGGCTGGACATGTAACGA 59.783 57.895 5.28 0.00 37.49 3.85
2456 3633 1.082117 CCGGCTGGACATGTAACGAC 61.082 60.000 5.28 0.00 37.49 4.34
2457 3634 0.389296 CGGCTGGACATGTAACGACA 60.389 55.000 0.00 0.00 40.72 4.35
2458 3635 1.803334 GGCTGGACATGTAACGACAA 58.197 50.000 0.00 0.00 39.59 3.18
2459 3636 1.732259 GGCTGGACATGTAACGACAAG 59.268 52.381 0.00 0.00 39.59 3.16
2460 3637 2.611971 GGCTGGACATGTAACGACAAGA 60.612 50.000 0.00 0.00 39.59 3.02
2461 3638 3.064207 GCTGGACATGTAACGACAAGAA 58.936 45.455 0.00 0.00 39.59 2.52
2462 3639 3.496884 GCTGGACATGTAACGACAAGAAA 59.503 43.478 0.00 0.00 39.59 2.52
2463 3640 4.610680 GCTGGACATGTAACGACAAGAAAC 60.611 45.833 0.00 0.00 39.59 2.78
2464 3641 4.699637 TGGACATGTAACGACAAGAAACT 58.300 39.130 0.00 0.00 39.59 2.66
2465 3642 4.748102 TGGACATGTAACGACAAGAAACTC 59.252 41.667 0.00 0.00 39.59 3.01
2466 3643 4.143389 GGACATGTAACGACAAGAAACTCG 60.143 45.833 0.00 0.00 39.59 4.18
2467 3644 3.739300 ACATGTAACGACAAGAAACTCGG 59.261 43.478 0.00 0.00 39.59 4.63
2468 3645 3.441496 TGTAACGACAAGAAACTCGGT 57.559 42.857 0.00 0.00 34.07 4.69
2469 3646 3.374745 TGTAACGACAAGAAACTCGGTC 58.625 45.455 0.00 0.00 34.07 4.79
2470 3647 2.589798 AACGACAAGAAACTCGGTCA 57.410 45.000 0.00 0.00 34.07 4.02
2471 3648 1.849097 ACGACAAGAAACTCGGTCAC 58.151 50.000 0.00 0.00 34.07 3.67
2472 3649 1.135527 ACGACAAGAAACTCGGTCACA 59.864 47.619 0.00 0.00 34.07 3.58
2473 3650 1.787155 CGACAAGAAACTCGGTCACAG 59.213 52.381 0.00 0.00 0.00 3.66
2474 3651 2.135933 GACAAGAAACTCGGTCACAGG 58.864 52.381 0.00 0.00 0.00 4.00
2475 3652 1.760613 ACAAGAAACTCGGTCACAGGA 59.239 47.619 0.00 0.00 0.00 3.86
2476 3653 2.135933 CAAGAAACTCGGTCACAGGAC 58.864 52.381 0.00 0.00 43.55 3.85
2477 3654 1.410004 AGAAACTCGGTCACAGGACA 58.590 50.000 0.00 0.00 46.17 4.02
2478 3655 1.068741 AGAAACTCGGTCACAGGACAC 59.931 52.381 0.00 0.00 46.17 3.67
2493 3670 2.022195 GGACACAGCCGTCATCTACTA 58.978 52.381 1.50 0.00 37.66 1.82
2499 3676 3.961408 ACAGCCGTCATCTACTATTCCTT 59.039 43.478 0.00 0.00 0.00 3.36
2519 3696 3.064324 ATTGTGCTGCTTCCGGCC 61.064 61.111 0.00 0.00 42.87 6.13
2576 3763 1.532316 TCCGGAACCCTGTCGTTCT 60.532 57.895 0.00 0.00 41.58 3.01
2588 3775 1.342076 TGTCGTTCTAGATCCTGCCCT 60.342 52.381 0.00 0.00 0.00 5.19
2666 3854 1.480219 CGTCTTCGTCCGCTTATGCC 61.480 60.000 0.00 0.00 35.36 4.40
2672 3860 1.883084 GTCCGCTTATGCCTCCACG 60.883 63.158 0.00 0.00 35.36 4.94
2691 3879 3.127203 CACGACTTCCTCTACATCGACTT 59.873 47.826 0.00 0.00 36.64 3.01
2826 4014 2.741985 CGTTCATGTGCTGGCCGA 60.742 61.111 0.00 0.00 0.00 5.54
2847 4039 5.065090 CCGAATGCTGTTCATAGATGTTTCA 59.935 40.000 3.87 0.00 34.33 2.69
2948 4145 9.605275 CATGGATTAGATTAGTCAGAAAAGTGA 57.395 33.333 0.00 0.00 0.00 3.41
2990 4187 6.183360 CCAAAAACCTTGTTTTAGGCACTTTC 60.183 38.462 5.46 0.00 41.75 2.62
3005 4203 1.000955 ACTTTCCGACTCATGCTTCGT 59.999 47.619 12.88 0.00 33.23 3.85
3015 4213 2.285977 TCATGCTTCGTCGCTACTCTA 58.714 47.619 0.00 0.00 0.00 2.43
3032 4230 7.307337 CGCTACTCTAAAACCGGAAAAGTTTAA 60.307 37.037 9.46 0.00 36.44 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.512485 TCTCTCTACTAGCTCGTCCG 57.488 55.000 0.00 0.00 0.00 4.79
39 40 4.160329 TCCCTCTCTTTTAGCTCAGTGAA 58.840 43.478 0.00 0.00 0.00 3.18
42 43 4.023291 CTCTCCCTCTCTTTTAGCTCAGT 58.977 47.826 0.00 0.00 0.00 3.41
129 130 1.641577 CTTCCTTAACGAGCGGAAGG 58.358 55.000 15.56 15.56 46.33 3.46
137 138 3.118920 TGGATCAATCGCTTCCTTAACGA 60.119 43.478 0.00 0.00 40.53 3.85
202 208 2.230130 TTCCCCCTATTTTGGTGCTG 57.770 50.000 0.00 0.00 0.00 4.41
218 224 2.979240 AGATTCGTGCTCCTTCTTTCC 58.021 47.619 0.00 0.00 0.00 3.13
223 230 2.095053 GCTTCAAGATTCGTGCTCCTTC 59.905 50.000 0.00 0.00 0.00 3.46
310 325 9.600646 GAAAATCTCAAGTGTAGAAACTTAAGC 57.399 33.333 1.29 0.00 38.34 3.09
363 378 1.072666 GCGCTTCCAATCCTTTTGCG 61.073 55.000 0.00 0.00 43.91 4.85
417 1125 5.422214 TCCCTTTTCAGTCTGGACTATTC 57.578 43.478 2.75 0.00 40.20 1.75
422 1296 3.753797 GACAATCCCTTTTCAGTCTGGAC 59.246 47.826 0.00 0.00 0.00 4.02
451 1341 1.225855 GGTTCTGTCATTGCGTGTCA 58.774 50.000 0.00 0.00 0.00 3.58
457 1347 0.445436 CGAGCTGGTTCTGTCATTGC 59.555 55.000 0.00 0.00 0.00 3.56
458 1348 1.728971 GACGAGCTGGTTCTGTCATTG 59.271 52.381 1.83 0.00 0.00 2.82
487 1377 3.325425 TCCGGTATGTGAAGTTTCAGGAA 59.675 43.478 0.00 0.00 37.98 3.36
489 1379 3.262420 CTCCGGTATGTGAAGTTTCAGG 58.738 50.000 0.00 0.00 37.98 3.86
491 1381 2.901192 TCCTCCGGTATGTGAAGTTTCA 59.099 45.455 0.00 0.00 34.20 2.69
617 1536 3.192844 CAGCAGATTTCTGGATGCAACTT 59.807 43.478 9.49 0.00 43.94 2.66
618 1537 2.753452 CAGCAGATTTCTGGATGCAACT 59.247 45.455 9.49 0.00 43.94 3.16
769 1699 4.680237 TGAGTTGGCGCCAGACGG 62.680 66.667 30.75 0.00 43.93 4.79
860 1810 4.523173 CAGGGCGTGAGAGGTTTATATAGA 59.477 45.833 0.00 0.00 0.00 1.98
872 1823 3.282745 GAACGAGCAGGGCGTGAGA 62.283 63.158 12.03 0.00 41.75 3.27
913 1864 2.292785 TGAGGAGGAGAAAGCTGGATCT 60.293 50.000 0.00 0.00 0.00 2.75
914 1865 2.114616 TGAGGAGGAGAAAGCTGGATC 58.885 52.381 0.00 0.00 0.00 3.36
950 1916 4.829064 CTCAACTGGAGTAGCTAGCTAG 57.171 50.000 24.78 16.84 38.90 3.42
964 1940 4.450419 CCAGAAAGTAAGCTCACTCAACTG 59.550 45.833 9.64 9.64 0.00 3.16
985 1961 2.324330 CCATGCGTTTCGTGCTCCA 61.324 57.895 0.00 0.00 0.00 3.86
1639 2693 2.289195 CCACCATGAAGCTGCATTTGTT 60.289 45.455 3.72 0.00 0.00 2.83
1641 2695 1.546923 TCCACCATGAAGCTGCATTTG 59.453 47.619 3.72 5.25 0.00 2.32
1995 3072 4.885325 TCGGTGCAGTAGTTGTAGATCATA 59.115 41.667 0.00 0.00 0.00 2.15
2090 3169 2.595124 TCGATCAACGTATGCATGGT 57.405 45.000 10.16 4.28 43.13 3.55
2109 3201 1.229415 ACCCCCATCTTCCCCATCTAT 59.771 52.381 0.00 0.00 0.00 1.98
2110 3202 0.653397 ACCCCCATCTTCCCCATCTA 59.347 55.000 0.00 0.00 0.00 1.98
2111 3203 0.995675 CACCCCCATCTTCCCCATCT 60.996 60.000 0.00 0.00 0.00 2.90
2114 3206 1.928567 GACACCCCCATCTTCCCCA 60.929 63.158 0.00 0.00 0.00 4.96
2129 3251 8.414003 GTCCTTACTGATCATACAATACAGACA 58.586 37.037 0.00 0.00 33.53 3.41
2148 3270 2.032924 GCAAACACACACCAGTCCTTAC 59.967 50.000 0.00 0.00 0.00 2.34
2158 3280 1.096386 TACCACCGGCAAACACACAC 61.096 55.000 0.00 0.00 0.00 3.82
2159 3281 0.816018 CTACCACCGGCAAACACACA 60.816 55.000 0.00 0.00 0.00 3.72
2206 3350 5.690409 CGAGGCATATATTACACACGAGTTT 59.310 40.000 0.00 0.00 0.00 2.66
2209 3353 4.795268 ACGAGGCATATATTACACACGAG 58.205 43.478 0.00 0.00 0.00 4.18
2243 3396 5.679734 AGTAGAGCAACAAACACATGAAG 57.320 39.130 0.00 0.00 0.00 3.02
2263 3416 0.673437 CCAACAATCGGTGGCAAAGT 59.327 50.000 0.00 0.00 0.00 2.66
2264 3417 0.673437 ACCAACAATCGGTGGCAAAG 59.327 50.000 0.00 0.00 34.69 2.77
2265 3418 1.115467 AACCAACAATCGGTGGCAAA 58.885 45.000 0.00 0.00 36.67 3.68
2268 3421 1.175983 TCCAACCAACAATCGGTGGC 61.176 55.000 0.00 0.00 36.67 5.01
2270 3423 4.981806 ATAATCCAACCAACAATCGGTG 57.018 40.909 0.00 0.00 36.67 4.94
2271 3424 4.095782 CGAATAATCCAACCAACAATCGGT 59.904 41.667 0.00 0.00 38.85 4.69
2272 3425 4.095782 ACGAATAATCCAACCAACAATCGG 59.904 41.667 0.00 0.00 0.00 4.18
2273 3426 5.229921 ACGAATAATCCAACCAACAATCG 57.770 39.130 0.00 0.00 0.00 3.34
2275 3428 5.182380 ACGAACGAATAATCCAACCAACAAT 59.818 36.000 0.14 0.00 0.00 2.71
2301 3461 0.603065 TCAGCACACAGTGAGCGTAT 59.397 50.000 16.19 0.00 38.98 3.06
2306 3466 2.445565 TAAGCTCAGCACACAGTGAG 57.554 50.000 7.81 0.00 42.72 3.51
2308 3468 2.928757 GAGATAAGCTCAGCACACAGTG 59.071 50.000 0.00 0.00 43.38 3.66
2319 3479 3.243267 GGTCAAGGTCTCGAGATAAGCTC 60.243 52.174 19.90 4.02 40.38 4.09
2321 3481 2.427453 TGGTCAAGGTCTCGAGATAAGC 59.573 50.000 19.90 12.02 0.00 3.09
2324 3484 2.025155 GCTGGTCAAGGTCTCGAGATA 58.975 52.381 19.90 0.00 0.00 1.98
2333 3493 0.764890 TAACAGCTGCTGGTCAAGGT 59.235 50.000 31.00 7.70 35.51 3.50
2350 3510 4.464008 GGTGATTGGCTCCAGATGATTAA 58.536 43.478 0.00 0.00 0.00 1.40
2355 3515 0.816825 CGGGTGATTGGCTCCAGATG 60.817 60.000 0.00 0.00 31.65 2.90
2357 3517 2.669133 CCGGGTGATTGGCTCCAGA 61.669 63.158 0.00 0.00 31.65 3.86
2358 3518 2.124570 CCGGGTGATTGGCTCCAG 60.125 66.667 0.00 0.00 31.65 3.86
2360 3520 2.124695 GACCGGGTGATTGGCTCC 60.125 66.667 3.30 0.00 0.00 4.70
2361 3521 1.450312 CTGACCGGGTGATTGGCTC 60.450 63.158 3.30 0.00 0.00 4.70
2362 3522 2.224159 ACTGACCGGGTGATTGGCT 61.224 57.895 3.30 0.00 0.00 4.75
2364 3524 1.377202 CCACTGACCGGGTGATTGG 60.377 63.158 3.30 6.50 36.89 3.16
2365 3525 0.036164 TTCCACTGACCGGGTGATTG 59.964 55.000 3.30 0.00 36.89 2.67
2367 3527 0.036306 GTTTCCACTGACCGGGTGAT 59.964 55.000 3.30 0.00 36.89 3.06
2368 3528 1.448497 GTTTCCACTGACCGGGTGA 59.552 57.895 3.30 0.00 36.89 4.02
2370 3530 1.114722 TACGTTTCCACTGACCGGGT 61.115 55.000 6.32 0.00 0.00 5.28
2373 3550 2.074547 ACATACGTTTCCACTGACCG 57.925 50.000 0.00 0.00 0.00 4.79
2379 3556 6.963049 ATCAGTTTCTACATACGTTTCCAC 57.037 37.500 0.00 0.00 0.00 4.02
2381 3558 7.972277 TCACTATCAGTTTCTACATACGTTTCC 59.028 37.037 0.00 0.00 0.00 3.13
2393 3570 4.215908 TCGGCCTATCACTATCAGTTTCT 58.784 43.478 0.00 0.00 0.00 2.52
2397 3574 1.889829 GCTCGGCCTATCACTATCAGT 59.110 52.381 0.00 0.00 0.00 3.41
2414 3591 5.008712 GGTTAATTATTGGCAGTGTAGGCTC 59.991 44.000 0.00 0.00 34.73 4.70
2415 3592 4.887655 GGTTAATTATTGGCAGTGTAGGCT 59.112 41.667 0.00 0.00 34.73 4.58
2416 3593 4.261031 CGGTTAATTATTGGCAGTGTAGGC 60.261 45.833 0.00 0.00 0.00 3.93
2417 3594 4.274950 CCGGTTAATTATTGGCAGTGTAGG 59.725 45.833 0.00 0.00 0.00 3.18
2418 3595 4.261031 GCCGGTTAATTATTGGCAGTGTAG 60.261 45.833 1.90 0.00 45.06 2.74
2419 3596 3.628487 GCCGGTTAATTATTGGCAGTGTA 59.372 43.478 1.90 0.00 45.06 2.90
2420 3597 2.425668 GCCGGTTAATTATTGGCAGTGT 59.574 45.455 1.90 0.00 45.06 3.55
2421 3598 3.078594 GCCGGTTAATTATTGGCAGTG 57.921 47.619 1.90 0.00 45.06 3.66
2425 3602 2.034179 GTCCAGCCGGTTAATTATTGGC 59.966 50.000 1.90 12.74 46.07 4.52
2426 3603 3.283751 TGTCCAGCCGGTTAATTATTGG 58.716 45.455 1.90 0.00 0.00 3.16
2427 3604 4.338118 ACATGTCCAGCCGGTTAATTATTG 59.662 41.667 1.90 0.00 0.00 1.90
2428 3605 4.532834 ACATGTCCAGCCGGTTAATTATT 58.467 39.130 1.90 0.00 0.00 1.40
2429 3606 4.164843 ACATGTCCAGCCGGTTAATTAT 57.835 40.909 1.90 0.00 0.00 1.28
2430 3607 3.637911 ACATGTCCAGCCGGTTAATTA 57.362 42.857 1.90 0.00 0.00 1.40
2431 3608 2.507407 ACATGTCCAGCCGGTTAATT 57.493 45.000 1.90 0.00 0.00 1.40
2432 3609 3.275999 GTTACATGTCCAGCCGGTTAAT 58.724 45.455 0.00 0.00 0.00 1.40
2433 3610 2.702261 GTTACATGTCCAGCCGGTTAA 58.298 47.619 0.00 0.00 0.00 2.01
2434 3611 1.404449 CGTTACATGTCCAGCCGGTTA 60.404 52.381 0.00 0.00 0.00 2.85
2435 3612 0.672401 CGTTACATGTCCAGCCGGTT 60.672 55.000 0.00 0.00 0.00 4.44
2436 3613 1.079405 CGTTACATGTCCAGCCGGT 60.079 57.895 0.00 0.00 0.00 5.28
2437 3614 1.082117 GTCGTTACATGTCCAGCCGG 61.082 60.000 0.00 0.00 0.00 6.13
2438 3615 0.389296 TGTCGTTACATGTCCAGCCG 60.389 55.000 0.00 0.00 0.00 5.52
2439 3616 1.732259 CTTGTCGTTACATGTCCAGCC 59.268 52.381 0.00 0.00 34.97 4.85
2440 3617 2.683968 TCTTGTCGTTACATGTCCAGC 58.316 47.619 0.00 0.00 34.97 4.85
2441 3618 4.750098 AGTTTCTTGTCGTTACATGTCCAG 59.250 41.667 0.00 0.00 34.97 3.86
2442 3619 4.699637 AGTTTCTTGTCGTTACATGTCCA 58.300 39.130 0.00 0.00 34.97 4.02
2443 3620 4.143389 CGAGTTTCTTGTCGTTACATGTCC 60.143 45.833 0.00 0.00 34.97 4.02
2444 3621 4.143389 CCGAGTTTCTTGTCGTTACATGTC 60.143 45.833 0.00 0.00 34.97 3.06
2445 3622 3.739300 CCGAGTTTCTTGTCGTTACATGT 59.261 43.478 2.69 2.69 34.97 3.21
2446 3623 3.739300 ACCGAGTTTCTTGTCGTTACATG 59.261 43.478 0.00 0.00 34.97 3.21
2447 3624 3.985925 GACCGAGTTTCTTGTCGTTACAT 59.014 43.478 0.00 0.00 34.97 2.29
2448 3625 3.181488 TGACCGAGTTTCTTGTCGTTACA 60.181 43.478 0.00 0.00 34.27 2.41
2449 3626 3.181178 GTGACCGAGTTTCTTGTCGTTAC 59.819 47.826 0.00 0.00 34.27 2.50
2450 3627 3.181488 TGTGACCGAGTTTCTTGTCGTTA 60.181 43.478 0.00 0.00 34.27 3.18
2451 3628 2.199236 GTGACCGAGTTTCTTGTCGTT 58.801 47.619 0.00 0.00 34.27 3.85
2452 3629 1.135527 TGTGACCGAGTTTCTTGTCGT 59.864 47.619 0.00 0.00 34.27 4.34
2453 3630 1.787155 CTGTGACCGAGTTTCTTGTCG 59.213 52.381 0.00 0.00 35.91 4.35
2454 3631 2.135933 CCTGTGACCGAGTTTCTTGTC 58.864 52.381 0.00 0.00 0.00 3.18
2455 3632 1.760613 TCCTGTGACCGAGTTTCTTGT 59.239 47.619 0.00 0.00 0.00 3.16
2456 3633 2.135933 GTCCTGTGACCGAGTTTCTTG 58.864 52.381 0.00 0.00 35.34 3.02
2457 3634 1.760613 TGTCCTGTGACCGAGTTTCTT 59.239 47.619 0.00 0.00 41.01 2.52
2458 3635 1.068741 GTGTCCTGTGACCGAGTTTCT 59.931 52.381 0.00 0.00 41.01 2.52
2459 3636 1.202486 TGTGTCCTGTGACCGAGTTTC 60.202 52.381 0.00 0.00 41.01 2.78
2460 3637 0.828022 TGTGTCCTGTGACCGAGTTT 59.172 50.000 0.00 0.00 41.01 2.66
2461 3638 0.389391 CTGTGTCCTGTGACCGAGTT 59.611 55.000 0.00 0.00 41.01 3.01
2462 3639 2.041976 CTGTGTCCTGTGACCGAGT 58.958 57.895 0.00 0.00 41.01 4.18
2463 3640 1.373497 GCTGTGTCCTGTGACCGAG 60.373 63.158 0.00 0.00 41.01 4.63
2464 3641 2.734591 GCTGTGTCCTGTGACCGA 59.265 61.111 0.00 0.00 41.01 4.69
2465 3642 2.357517 GGCTGTGTCCTGTGACCG 60.358 66.667 0.00 0.00 41.01 4.79
2466 3643 2.357517 CGGCTGTGTCCTGTGACC 60.358 66.667 0.00 0.00 41.01 4.02
2467 3644 1.664965 GACGGCTGTGTCCTGTGAC 60.665 63.158 0.80 0.00 42.12 3.67
2468 3645 1.471829 ATGACGGCTGTGTCCTGTGA 61.472 55.000 0.80 0.00 38.11 3.58
2469 3646 1.004560 ATGACGGCTGTGTCCTGTG 60.005 57.895 0.80 0.00 38.11 3.66
2470 3647 1.188219 AGATGACGGCTGTGTCCTGT 61.188 55.000 0.80 0.00 38.11 4.00
2471 3648 0.817654 TAGATGACGGCTGTGTCCTG 59.182 55.000 0.80 0.00 38.11 3.86
2472 3649 0.818296 GTAGATGACGGCTGTGTCCT 59.182 55.000 0.80 0.00 38.11 3.85
2473 3650 0.818296 AGTAGATGACGGCTGTGTCC 59.182 55.000 0.80 0.00 38.11 4.02
2474 3651 3.992260 ATAGTAGATGACGGCTGTGTC 57.008 47.619 0.80 0.54 39.37 3.67
2475 3652 3.068307 GGAATAGTAGATGACGGCTGTGT 59.932 47.826 0.80 0.00 0.00 3.72
2476 3653 3.319405 AGGAATAGTAGATGACGGCTGTG 59.681 47.826 0.80 0.00 0.00 3.66
2477 3654 3.567397 AGGAATAGTAGATGACGGCTGT 58.433 45.455 0.00 0.00 0.00 4.40
2478 3655 4.592485 AAGGAATAGTAGATGACGGCTG 57.408 45.455 0.00 0.00 0.00 4.85
2493 3670 3.056322 GGAAGCAGCACAATGAAAGGAAT 60.056 43.478 0.00 0.00 0.00 3.01
2499 3676 1.865788 GCCGGAAGCAGCACAATGAA 61.866 55.000 5.05 0.00 42.97 2.57
2525 3702 3.119096 GACCGCCGGAAGCAGTTC 61.119 66.667 11.71 0.00 44.04 3.01
2576 3763 1.794714 GTTCTCCAGGGCAGGATCTA 58.205 55.000 0.00 0.00 36.99 1.98
2588 3775 2.871096 AACCTTATTGCCGTTCTCCA 57.129 45.000 0.00 0.00 0.00 3.86
2626 3814 2.362503 ACGGATCGGGAGCAGTCA 60.363 61.111 5.18 0.00 0.00 3.41
2660 3848 1.480954 GAGGAAGTCGTGGAGGCATAA 59.519 52.381 0.00 0.00 0.00 1.90
2666 3854 2.032302 CGATGTAGAGGAAGTCGTGGAG 59.968 54.545 0.00 0.00 0.00 3.86
2672 3860 4.966965 TGAAGTCGATGTAGAGGAAGTC 57.033 45.455 0.00 0.00 0.00 3.01
2691 3879 2.661594 CAACTTCGTCGTCAGTCATGA 58.338 47.619 0.00 0.00 0.00 3.07
2826 4014 8.746530 AGAAATGAAACATCTATGAACAGCATT 58.253 29.630 0.00 0.00 38.44 3.56
2847 4039 7.937649 TGTGAGCACGTACAGTATATAGAAAT 58.062 34.615 0.00 0.00 0.00 2.17
2855 4047 2.166459 AGCATGTGAGCACGTACAGTAT 59.834 45.455 0.00 0.00 36.85 2.12
2948 4145 9.100197 AGGTTTTTGGAGTGTTGGAAATATTAT 57.900 29.630 0.00 0.00 0.00 1.28
2963 4160 4.808895 GTGCCTAAAACAAGGTTTTTGGAG 59.191 41.667 27.31 14.06 39.02 3.86
3005 4203 3.940209 TTTCCGGTTTTAGAGTAGCGA 57.060 42.857 0.00 0.00 37.44 4.93
3015 4213 6.535865 GTGTTCCATTAAACTTTTCCGGTTTT 59.464 34.615 0.00 0.00 37.88 2.43
3032 4230 4.555262 CCAACGCTTAAAATGTGTTCCAT 58.445 39.130 0.00 0.00 36.20 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.