Multiple sequence alignment - TraesCS7B01G326200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G326200 chr7B 100.000 4138 0 0 1 4138 579666083 579670220 0.000000e+00 7642.0
1 TraesCS7B01G326200 chr7B 80.854 867 103 37 2794 3637 579778918 579779744 1.260000e-174 623.0
2 TraesCS7B01G326200 chr7A 87.833 2104 145 49 649 2696 616750253 616748205 0.000000e+00 2364.0
3 TraesCS7B01G326200 chr7A 89.676 833 50 18 2741 3547 616748187 616747365 0.000000e+00 1029.0
4 TraesCS7B01G326200 chr7A 84.244 476 43 20 3177 3650 616734596 616734151 6.350000e-118 435.0
5 TraesCS7B01G326200 chr7A 92.188 64 4 1 3724 3787 616747359 616747297 5.700000e-14 89.8
6 TraesCS7B01G326200 chr7D 89.860 1785 121 42 2380 4136 536472133 536473885 0.000000e+00 2239.0
7 TraesCS7B01G326200 chr7D 90.800 837 40 8 1517 2324 536471151 536471979 0.000000e+00 1085.0
8 TraesCS7B01G326200 chr7D 85.061 743 45 23 726 1439 536470018 536470723 0.000000e+00 697.0
9 TraesCS7B01G326200 chr7D 90.359 446 28 7 86 519 536468728 536469170 4.640000e-159 571.0
10 TraesCS7B01G326200 chr7D 94.872 78 4 0 1 78 536467589 536467666 5.620000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G326200 chr7B 579666083 579670220 4137 False 7642.000000 7642 100.0000 1 4138 1 chr7B.!!$F1 4137
1 TraesCS7B01G326200 chr7B 579778918 579779744 826 False 623.000000 623 80.8540 2794 3637 1 chr7B.!!$F2 843
2 TraesCS7B01G326200 chr7A 616747297 616750253 2956 True 1160.933333 2364 89.8990 649 3787 3 chr7A.!!$R2 3138
3 TraesCS7B01G326200 chr7D 536467589 536473885 6296 False 942.800000 2239 90.1904 1 4136 5 chr7D.!!$F1 4135

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
84 85 0.034059 CGACAAGAGCAGGAACCACT 59.966 55.0 0.00 0.00 0.00 4.0 F
1201 2945 0.174617 CTCGAGTTTCTGCCTCCTCC 59.825 60.0 3.62 0.00 0.00 4.3 F
2611 4853 0.108377 CTGCAGGTACATGGCGTGTA 60.108 55.0 15.38 15.38 42.29 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1511 3598 0.250770 AGCATGCATGATGATCCGCT 60.251 50.0 30.64 14.24 33.31 5.52 R
2941 5201 0.178068 GGCTTCCTGCAGACGGATAA 59.822 55.0 17.39 0.00 45.15 1.75 R
3971 6262 0.111253 AGAAAGGTGGGCAGTGAAGG 59.889 55.0 0.00 0.00 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.870941 TTCTCCGGACCAGGGCTCTA 61.871 60.000 0.00 0.00 0.00 2.43
64 65 2.291741 GGAATGCCAACGAAGATCCATC 59.708 50.000 0.00 0.00 0.00 3.51
74 75 2.478831 GAAGATCCATCCGACAAGAGC 58.521 52.381 0.00 0.00 0.00 4.09
78 79 0.614697 TCCATCCGACAAGAGCAGGA 60.615 55.000 0.00 0.00 37.17 3.86
79 80 0.250234 CCATCCGACAAGAGCAGGAA 59.750 55.000 0.00 0.00 36.25 3.36
83 84 0.951040 CCGACAAGAGCAGGAACCAC 60.951 60.000 0.00 0.00 0.00 4.16
84 85 0.034059 CGACAAGAGCAGGAACCACT 59.966 55.000 0.00 0.00 0.00 4.00
110 1165 2.586648 TTTTTCTCAAGCCCTCTCCC 57.413 50.000 0.00 0.00 0.00 4.30
136 1191 4.392138 GCTGGAAGTGGTGATGTTTACTAC 59.608 45.833 0.00 0.00 35.30 2.73
201 1256 3.701542 TCATCTCCATATATCCGGACAGC 59.298 47.826 6.12 0.00 0.00 4.40
209 1264 2.871795 TATCCGGACAGCCAGCCTGA 62.872 60.000 6.12 0.00 44.64 3.86
239 1294 5.119434 GTCCGAACATGAGAAAGAGAGAAAC 59.881 44.000 0.00 0.00 0.00 2.78
265 1332 2.582052 TCAACCGAAGCCAACAAATCT 58.418 42.857 0.00 0.00 0.00 2.40
283 1350 5.728637 AATCTGGATGTTTGAAAACCCTC 57.271 39.130 3.59 1.34 38.11 4.30
290 1357 4.314740 TGTTTGAAAACCCTCAAATCCG 57.685 40.909 3.59 0.00 44.76 4.18
314 1381 4.649692 CTCATATGTGAGGAGGAAATGGG 58.350 47.826 11.44 0.00 46.56 4.00
322 1389 2.305927 GAGGAGGAAATGGGTTGTCTGA 59.694 50.000 0.00 0.00 0.00 3.27
344 1411 0.991920 ACCAACCCATCCTACACCAG 59.008 55.000 0.00 0.00 0.00 4.00
350 1417 3.763057 ACCCATCCTACACCAGTTTTTC 58.237 45.455 0.00 0.00 0.00 2.29
351 1418 3.397955 ACCCATCCTACACCAGTTTTTCT 59.602 43.478 0.00 0.00 0.00 2.52
352 1419 4.141018 ACCCATCCTACACCAGTTTTTCTT 60.141 41.667 0.00 0.00 0.00 2.52
402 1469 4.828939 TCCAATCATATGCCCAGACAATTC 59.171 41.667 0.00 0.00 0.00 2.17
403 1470 4.585581 CCAATCATATGCCCAGACAATTCA 59.414 41.667 0.00 0.00 0.00 2.57
418 1485 6.033196 CAGACAATTCAAAAGATCACGATTGC 59.967 38.462 0.00 0.00 0.00 3.56
433 1500 2.384382 GATTGCGTGCATAAAATCCGG 58.616 47.619 0.00 0.00 0.00 5.14
434 1501 0.453793 TTGCGTGCATAAAATCCGGG 59.546 50.000 0.00 0.00 0.00 5.73
447 1514 4.736126 AAATCCGGGTTTGAAATGGATC 57.264 40.909 13.08 0.00 38.46 3.36
449 1516 1.279558 TCCGGGTTTGAAATGGATCGA 59.720 47.619 0.00 0.00 0.00 3.59
452 1519 2.486203 CGGGTTTGAAATGGATCGAACA 59.514 45.455 9.06 0.00 42.90 3.18
454 1521 4.380444 CGGGTTTGAAATGGATCGAACATT 60.380 41.667 11.57 11.57 42.90 2.71
462 1529 1.543802 TGGATCGAACATTTTGGTGGC 59.456 47.619 0.00 0.00 0.00 5.01
465 1532 0.958091 TCGAACATTTTGGTGGCCAG 59.042 50.000 5.11 0.00 33.81 4.85
489 1556 1.209747 GGGACCAAATTAGCCGAGTCT 59.790 52.381 0.00 0.00 0.00 3.24
503 1570 3.686726 GCCGAGTCTGATTGAAGATGTTT 59.313 43.478 0.00 0.00 0.00 2.83
505 1572 5.174395 CCGAGTCTGATTGAAGATGTTTCT 58.826 41.667 0.00 0.00 0.00 2.52
506 1573 5.063186 CCGAGTCTGATTGAAGATGTTTCTG 59.937 44.000 0.00 0.00 30.72 3.02
580 1716 5.048713 CGAAGGTATCAAACAAGCTTTTCCT 60.049 40.000 0.00 0.00 33.80 3.36
581 1717 5.966742 AGGTATCAAACAAGCTTTTCCTC 57.033 39.130 0.00 0.00 0.00 3.71
582 1718 4.455877 AGGTATCAAACAAGCTTTTCCTCG 59.544 41.667 0.00 0.00 0.00 4.63
615 1751 5.161358 GTTGAAATGGTAAAAGCTAGCCAC 58.839 41.667 12.13 4.47 33.42 5.01
617 1753 3.343941 AATGGTAAAAGCTAGCCACGA 57.656 42.857 12.13 2.38 33.42 4.35
619 1755 3.343941 TGGTAAAAGCTAGCCACGAAT 57.656 42.857 12.13 0.00 0.00 3.34
622 1758 3.687698 GGTAAAAGCTAGCCACGAATCAA 59.312 43.478 12.13 0.00 0.00 2.57
624 1760 2.472695 AAGCTAGCCACGAATCAACA 57.527 45.000 12.13 0.00 0.00 3.33
663 1799 3.335579 ACTCTTTAGCCACGAATCAACC 58.664 45.455 0.00 0.00 0.00 3.77
793 2513 3.935872 GCAAGCGCACACGTGTCA 61.936 61.111 20.49 0.00 42.83 3.58
817 2537 3.043713 CAGAGGCGCACGCTTTCA 61.044 61.111 15.36 0.00 41.60 2.69
857 2577 2.811317 GAGCGCCTTCGTGTCCAG 60.811 66.667 2.29 0.00 38.14 3.86
860 2580 2.342279 CGCCTTCGTGTCCAGGAA 59.658 61.111 0.00 2.81 34.51 3.36
902 2623 2.539985 GATTCGATTCGCCGACGC 59.460 61.111 0.00 0.00 38.39 5.19
947 2674 1.523258 CAGCAGCGGGGATGAGAAG 60.523 63.158 0.00 0.00 0.00 2.85
979 2706 4.430423 CAACACGAAGAGGCGCGC 62.430 66.667 25.94 25.94 33.86 6.86
1054 2781 4.415501 CGTCGACTGCAAGCACGC 62.416 66.667 14.70 0.00 37.60 5.34
1055 2782 3.337889 GTCGACTGCAAGCACGCA 61.338 61.111 8.70 0.00 37.60 5.24
1056 2783 3.337889 TCGACTGCAAGCACGCAC 61.338 61.111 0.00 0.00 37.60 5.34
1057 2784 4.707840 CGACTGCAAGCACGCACG 62.708 66.667 0.00 0.00 37.60 5.34
1176 2920 1.602323 CCACCCTTTTAGGCGCACA 60.602 57.895 10.83 0.00 32.73 4.57
1199 2943 1.188219 TGCTCGAGTTTCTGCCTCCT 61.188 55.000 15.13 0.00 0.00 3.69
1200 2944 0.459411 GCTCGAGTTTCTGCCTCCTC 60.459 60.000 15.13 0.00 0.00 3.71
1201 2945 0.174617 CTCGAGTTTCTGCCTCCTCC 59.825 60.000 3.62 0.00 0.00 4.30
1202 2946 1.153745 CGAGTTTCTGCCTCCTCCG 60.154 63.158 0.00 0.00 0.00 4.63
1203 2947 1.448717 GAGTTTCTGCCTCCTCCGC 60.449 63.158 0.00 0.00 0.00 5.54
1204 2948 2.436824 GTTTCTGCCTCCTCCGCC 60.437 66.667 0.00 0.00 0.00 6.13
1205 2949 2.927856 TTTCTGCCTCCTCCGCCA 60.928 61.111 0.00 0.00 0.00 5.69
1206 2950 2.300967 TTTCTGCCTCCTCCGCCAT 61.301 57.895 0.00 0.00 0.00 4.40
1287 3031 0.458716 CTTCTTCTTCCCTCGTCGCC 60.459 60.000 0.00 0.00 0.00 5.54
1338 3082 0.391130 CGTTGAAGAGGAATCCGGCA 60.391 55.000 0.00 0.00 0.00 5.69
1358 3102 3.121019 CCGTCGTCCTCCTCCATC 58.879 66.667 0.00 0.00 0.00 3.51
1410 3155 4.171103 GGCGGCGGGTTCAGGTAT 62.171 66.667 9.78 0.00 0.00 2.73
1436 3181 2.385315 GCACTCCTGCGTTTCTTTTTC 58.615 47.619 0.00 0.00 32.44 2.29
1440 3185 5.102313 CACTCCTGCGTTTCTTTTTCTTTT 58.898 37.500 0.00 0.00 0.00 2.27
1441 3186 5.230097 CACTCCTGCGTTTCTTTTTCTTTTC 59.770 40.000 0.00 0.00 0.00 2.29
1442 3187 5.125578 ACTCCTGCGTTTCTTTTTCTTTTCT 59.874 36.000 0.00 0.00 0.00 2.52
1443 3188 5.961272 TCCTGCGTTTCTTTTTCTTTTCTT 58.039 33.333 0.00 0.00 0.00 2.52
1444 3189 6.394809 TCCTGCGTTTCTTTTTCTTTTCTTT 58.605 32.000 0.00 0.00 0.00 2.52
1445 3190 6.871492 TCCTGCGTTTCTTTTTCTTTTCTTTT 59.129 30.769 0.00 0.00 0.00 2.27
1446 3191 7.386573 TCCTGCGTTTCTTTTTCTTTTCTTTTT 59.613 29.630 0.00 0.00 0.00 1.94
1467 3212 3.284711 TTTTTGGGTGAACCGTGGT 57.715 47.368 0.00 0.00 44.64 4.16
1470 3219 1.032657 TTTGGGTGAACCGTGGTGTG 61.033 55.000 0.00 0.00 44.64 3.82
1473 3548 1.597027 GGTGAACCGTGGTGTGGAG 60.597 63.158 0.00 0.00 0.00 3.86
1511 3598 3.449227 CTGTCTCTGCCCGCCGTA 61.449 66.667 0.00 0.00 0.00 4.02
1598 3710 9.980780 TTGTTCATGTTATGTCATGTTATAACG 57.019 29.630 19.83 12.37 43.70 3.18
1635 3768 7.478520 TGTATCTAAAGGATTTTTAGCTCGC 57.521 36.000 0.00 0.00 40.09 5.03
1639 3772 3.951979 AAGGATTTTTAGCTCGCATCG 57.048 42.857 0.00 0.00 0.00 3.84
1642 3775 4.439057 AGGATTTTTAGCTCGCATCGTTA 58.561 39.130 0.00 0.00 0.00 3.18
1657 3790 4.026475 GCATCGTTATTCTGTGTGAGTAGC 60.026 45.833 0.00 0.00 0.00 3.58
1671 3804 9.248291 CTGTGTGAGTAGCATTAATTTGTTTTT 57.752 29.630 0.00 0.00 0.00 1.94
1689 3822 1.795768 TTCATCGTGGCAGTGAGAAC 58.204 50.000 0.00 0.00 0.00 3.01
1838 3971 3.825328 AGATGTGGTCTTGTTCAAGCTT 58.175 40.909 7.58 0.00 31.47 3.74
1850 3989 8.721478 GTCTTGTTCAAGCTTATCATGTTTCTA 58.279 33.333 0.00 0.00 0.00 2.10
1851 3990 8.939929 TCTTGTTCAAGCTTATCATGTTTCTAG 58.060 33.333 0.00 0.00 0.00 2.43
1886 4025 4.513406 AGGTTCAGAGTTACCACCAAAA 57.487 40.909 0.00 0.00 36.87 2.44
1913 4052 5.515534 CCTTATGCAGTAGGGATGGCTAATT 60.516 44.000 8.66 0.00 31.28 1.40
1924 4063 4.999950 GGGATGGCTAATTACTGATCTGTG 59.000 45.833 14.91 0.00 0.00 3.66
1926 4065 6.471146 GGATGGCTAATTACTGATCTGTGAT 58.529 40.000 14.91 9.57 0.00 3.06
2026 4165 0.535335 TCACCGATACCAAGTCTGCC 59.465 55.000 0.00 0.00 0.00 4.85
2037 4176 2.553028 CCAAGTCTGCCATTGGTACTGT 60.553 50.000 4.26 0.00 40.93 3.55
2040 4179 4.634012 AGTCTGCCATTGGTACTGTTAA 57.366 40.909 4.26 0.00 0.00 2.01
2042 4181 4.760204 AGTCTGCCATTGGTACTGTTAAAC 59.240 41.667 4.26 0.00 0.00 2.01
2048 4187 6.040955 TGCCATTGGTACTGTTAAACATTTCA 59.959 34.615 4.26 0.00 0.00 2.69
2073 4215 8.602328 CACTGAATTAGACATCATTCTCTTGAC 58.398 37.037 0.00 0.00 31.64 3.18
2074 4216 7.768120 ACTGAATTAGACATCATTCTCTTGACC 59.232 37.037 0.00 0.00 31.64 4.02
2075 4217 7.623630 TGAATTAGACATCATTCTCTTGACCA 58.376 34.615 0.00 0.00 31.64 4.02
2076 4218 7.767659 TGAATTAGACATCATTCTCTTGACCAG 59.232 37.037 0.00 0.00 31.64 4.00
2077 4219 6.857437 TTAGACATCATTCTCTTGACCAGA 57.143 37.500 0.00 0.00 0.00 3.86
2078 4220 5.752036 AGACATCATTCTCTTGACCAGAA 57.248 39.130 0.00 0.00 34.37 3.02
2079 4221 5.732633 AGACATCATTCTCTTGACCAGAAG 58.267 41.667 0.00 0.00 33.36 2.85
2080 4222 5.248020 AGACATCATTCTCTTGACCAGAAGT 59.752 40.000 0.00 0.00 33.36 3.01
2095 4237 3.304928 CCAGAAGTTCAGAACACATTGCC 60.305 47.826 15.85 0.00 0.00 4.52
2104 4246 4.699735 TCAGAACACATTGCCGAACATATT 59.300 37.500 0.00 0.00 0.00 1.28
2105 4247 4.794762 CAGAACACATTGCCGAACATATTG 59.205 41.667 0.00 0.00 0.00 1.90
2190 4332 2.119495 ACCCATACGGATTCAGAGCTT 58.881 47.619 0.00 0.00 34.64 3.74
2363 4565 1.542108 GGATCATCTTTCCCAGCTCCG 60.542 57.143 0.00 0.00 0.00 4.63
2396 4636 5.388111 CAGTTGTGCATATCTCTGTTGTTG 58.612 41.667 0.00 0.00 0.00 3.33
2406 4646 1.466167 CTCTGTTGTTGGCCTGAATCG 59.534 52.381 3.32 0.00 0.00 3.34
2415 4655 1.596934 GCCTGAATCGTGACCCTCA 59.403 57.895 0.00 0.00 0.00 3.86
2416 4656 0.460987 GCCTGAATCGTGACCCTCAG 60.461 60.000 0.00 0.00 35.99 3.35
2426 4666 2.544267 CGTGACCCTCAGTCTTTTCAAC 59.456 50.000 0.00 0.00 46.46 3.18
2465 4705 2.173569 GTCAAGGGACCATAAGCCTGAT 59.826 50.000 0.00 0.00 38.12 2.90
2477 4717 3.823281 AAGCCTGATCAGACAGATGAG 57.177 47.619 24.62 5.66 39.94 2.90
2495 4735 2.721355 TGAGAGGCAGAGGATAGAGGAT 59.279 50.000 0.00 0.00 0.00 3.24
2547 4789 3.006537 GTGTCTTAGACTACTGGTTGCCA 59.993 47.826 13.86 0.00 33.15 4.92
2549 4791 4.995435 TGTCTTAGACTACTGGTTGCCAGA 60.995 45.833 20.63 4.98 42.50 3.86
2583 4825 3.136443 TCTTGGACTCATTGTTCAGTGGT 59.864 43.478 0.00 0.00 35.25 4.16
2611 4853 0.108377 CTGCAGGTACATGGCGTGTA 60.108 55.000 15.38 15.38 42.29 2.90
2696 4938 3.533606 ATCCAGAGATCAAGGTTCGTG 57.466 47.619 0.00 0.00 0.00 4.35
2698 4940 2.493675 TCCAGAGATCAAGGTTCGTGAG 59.506 50.000 0.00 0.00 0.00 3.51
2738 4990 3.263261 GCTTCTAGCCACTGAAACTACC 58.737 50.000 0.00 0.00 34.48 3.18
2739 4991 3.055747 GCTTCTAGCCACTGAAACTACCT 60.056 47.826 0.00 0.00 34.48 3.08
2747 4999 3.181443 CCACTGAAACTACCTTCCAACCT 60.181 47.826 0.00 0.00 0.00 3.50
2866 5120 2.430921 GCTGTGGGACGTCGTGAG 60.431 66.667 9.92 3.93 0.00 3.51
2904 5158 2.026822 CCACTCATCCTTGTACCAGCTT 60.027 50.000 0.00 0.00 0.00 3.74
2906 5160 4.184629 CACTCATCCTTGTACCAGCTTAC 58.815 47.826 0.00 0.00 0.00 2.34
2909 5163 3.451178 TCATCCTTGTACCAGCTTACCTC 59.549 47.826 0.00 0.00 0.00 3.85
2910 5164 1.822990 TCCTTGTACCAGCTTACCTCG 59.177 52.381 0.00 0.00 0.00 4.63
2913 5167 0.530744 TGTACCAGCTTACCTCGCAG 59.469 55.000 0.00 0.00 0.00 5.18
2916 5170 1.375908 CCAGCTTACCTCGCAGCAA 60.376 57.895 0.00 0.00 38.61 3.91
2917 5171 1.639298 CCAGCTTACCTCGCAGCAAC 61.639 60.000 0.00 0.00 38.61 4.17
2918 5172 1.376037 AGCTTACCTCGCAGCAACC 60.376 57.895 0.00 0.00 38.61 3.77
2919 5173 2.740714 GCTTACCTCGCAGCAACCG 61.741 63.158 0.00 0.00 35.95 4.44
2936 5196 3.616956 ACCGAGATGCAGAATTCTGAA 57.383 42.857 34.43 27.26 46.59 3.02
2937 5197 3.529533 ACCGAGATGCAGAATTCTGAAG 58.470 45.455 34.43 17.01 46.59 3.02
2938 5198 3.196469 ACCGAGATGCAGAATTCTGAAGA 59.804 43.478 34.43 19.24 46.59 2.87
2939 5199 4.141756 ACCGAGATGCAGAATTCTGAAGAT 60.142 41.667 34.43 22.49 46.59 2.40
2940 5200 4.815308 CCGAGATGCAGAATTCTGAAGATT 59.185 41.667 34.43 16.39 46.59 2.40
2941 5201 5.296283 CCGAGATGCAGAATTCTGAAGATTT 59.704 40.000 34.43 18.64 46.59 2.17
2943 5203 7.011763 CCGAGATGCAGAATTCTGAAGATTTTA 59.988 37.037 34.43 12.35 46.59 1.52
2944 5204 8.557864 CGAGATGCAGAATTCTGAAGATTTTAT 58.442 33.333 34.43 11.13 46.59 1.40
2947 5207 7.019774 TGCAGAATTCTGAAGATTTTATCCG 57.980 36.000 34.43 7.38 46.59 4.18
2949 5209 7.128976 GCAGAATTCTGAAGATTTTATCCGTC 58.871 38.462 34.43 10.52 46.59 4.79
2951 5211 8.333908 CAGAATTCTGAAGATTTTATCCGTCTG 58.666 37.037 28.13 0.00 46.59 3.51
3081 5344 4.631493 TCCGTTTCCTGGACCAGA 57.369 55.556 23.77 6.31 32.44 3.86
3185 5449 0.746063 CACAGGGCAATGTGTTGTGT 59.254 50.000 12.46 0.00 44.49 3.72
3192 5456 2.053627 GCAATGTGTTGTGTAAGCAGC 58.946 47.619 0.00 0.00 37.65 5.25
3226 5490 0.739813 AGCCCTTCGCATACGTGTTC 60.740 55.000 0.00 0.00 41.38 3.18
3227 5491 1.995991 CCCTTCGCATACGTGTTCG 59.004 57.895 0.00 0.00 41.18 3.95
3259 5523 3.384168 TCCAGTCTACCAATGCCTGTAT 58.616 45.455 0.00 0.00 0.00 2.29
3300 5564 7.143340 TCAGCTGTTCTCATTTCAAATTTCAG 58.857 34.615 14.67 0.00 0.00 3.02
3301 5565 7.013559 TCAGCTGTTCTCATTTCAAATTTCAGA 59.986 33.333 14.67 0.00 0.00 3.27
3303 5567 8.027771 AGCTGTTCTCATTTCAAATTTCAGATC 58.972 33.333 0.00 0.00 0.00 2.75
3316 5580 8.579006 TCAAATTTCAGATCTTGTAAATGTGCT 58.421 29.630 14.78 0.00 30.19 4.40
3335 5607 1.351430 TTCTCCGATCTGTTTGCGCG 61.351 55.000 0.00 0.00 0.00 6.86
3338 5610 4.851114 CGATCTGTTTGCGCGGCG 62.851 66.667 19.62 19.62 0.00 6.46
3501 5778 6.516860 GCTCAGGTTTCTGTTAGAAGTCTGTA 60.517 42.308 15.80 7.98 41.59 2.74
3573 5858 8.932434 TGATTTCTCTCTAGTGCTATGATACT 57.068 34.615 0.00 0.00 0.00 2.12
3682 5969 5.181811 TCAACCATAGCAAGTCAAATGTCTG 59.818 40.000 0.00 0.00 0.00 3.51
3693 5980 3.084039 TCAAATGTCTGCTCCATCAACC 58.916 45.455 0.00 0.00 0.00 3.77
3696 5983 1.450312 GTCTGCTCCATCAACCCCG 60.450 63.158 0.00 0.00 0.00 5.73
3697 5984 1.612146 TCTGCTCCATCAACCCCGA 60.612 57.895 0.00 0.00 0.00 5.14
3698 5985 1.198094 TCTGCTCCATCAACCCCGAA 61.198 55.000 0.00 0.00 0.00 4.30
3699 5986 0.107017 CTGCTCCATCAACCCCGAAT 60.107 55.000 0.00 0.00 0.00 3.34
3700 5987 0.107214 TGCTCCATCAACCCCGAATC 60.107 55.000 0.00 0.00 0.00 2.52
3701 5988 0.181350 GCTCCATCAACCCCGAATCT 59.819 55.000 0.00 0.00 0.00 2.40
3710 6000 2.620115 CAACCCCGAATCTTGATGATGG 59.380 50.000 0.00 0.00 35.21 3.51
3845 6135 5.186198 AGAAGATTAAACGGGGACAGAATG 58.814 41.667 0.00 0.00 46.00 2.67
3890 6180 6.544564 ACAGTTCAAAGAAGATTAAACGGGAA 59.455 34.615 0.00 0.00 0.00 3.97
3971 6262 8.993121 AGAGTGCAATATGCTATGTTGTATTAC 58.007 33.333 3.78 0.00 45.31 1.89
3976 6267 8.783093 GCAATATGCTATGTTGTATTACCTTCA 58.217 33.333 0.00 0.00 40.96 3.02
3998 6289 3.074538 ACTGCCCACCTTTCTTATGAGTT 59.925 43.478 0.00 0.00 0.00 3.01
4050 6341 6.070424 TGGTAAATACAGGAACTACTGGAAGG 60.070 42.308 0.00 0.00 42.75 3.46
4071 6362 4.396166 AGGCTGCAATCTGTTATGTTGTAC 59.604 41.667 0.50 0.00 0.00 2.90
4089 6380 1.958288 ACTATCTTCACTGCCCACCT 58.042 50.000 0.00 0.00 0.00 4.00
4096 6387 3.137544 TCTTCACTGCCCACCTTTCTTTA 59.862 43.478 0.00 0.00 0.00 1.85
4102 6393 5.476945 CACTGCCCACCTTTCTTTATAAGTT 59.523 40.000 0.00 0.00 0.00 2.66
4128 6419 7.723616 TCCATCAAACTTCAAAAGGAGTAATCA 59.276 33.333 0.00 0.00 0.00 2.57
4136 6427 9.190317 ACTTCAAAAGGAGTAATCAAAGAGTTT 57.810 29.630 0.00 0.00 0.00 2.66
4137 6428 9.455847 CTTCAAAAGGAGTAATCAAAGAGTTTG 57.544 33.333 0.00 0.00 41.96 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 3.635510 CCAGTAGAGCCCTGGTCC 58.364 66.667 0.00 0.00 43.73 4.46
64 65 0.951040 GTGGTTCCTGCTCTTGTCGG 60.951 60.000 0.00 0.00 0.00 4.79
74 75 4.038402 AGAAAAATGCTCAAGTGGTTCCTG 59.962 41.667 0.00 0.00 0.00 3.86
78 79 5.596836 TTGAGAAAAATGCTCAAGTGGTT 57.403 34.783 0.00 0.00 44.81 3.67
84 85 3.233507 AGGGCTTGAGAAAAATGCTCAA 58.766 40.909 0.00 0.00 46.78 3.02
110 1165 0.603707 ACATCACCACTTCCAGCGTG 60.604 55.000 0.00 0.00 0.00 5.34
123 1178 6.752815 GTCCTTAGAGCAGTAGTAAACATCAC 59.247 42.308 0.00 0.00 0.00 3.06
201 1256 1.746615 CGGACACCATTCAGGCTGG 60.747 63.158 15.73 1.12 43.14 4.85
209 1264 3.417069 TTCTCATGTTCGGACACCATT 57.583 42.857 0.00 0.00 38.91 3.16
265 1332 5.221621 GGATTTGAGGGTTTTCAAACATCCA 60.222 40.000 12.71 0.00 46.44 3.41
314 1381 3.243737 GGATGGGTTGGTTTTCAGACAAC 60.244 47.826 0.00 0.00 42.70 3.32
322 1389 2.178106 TGGTGTAGGATGGGTTGGTTTT 59.822 45.455 0.00 0.00 0.00 2.43
352 1419 8.919145 GGAGGTGAAGAGATAGAGAGAAAATAA 58.081 37.037 0.00 0.00 0.00 1.40
418 1485 2.162608 TCAAACCCGGATTTTATGCACG 59.837 45.455 0.73 0.00 0.00 5.34
428 1495 2.092646 TCGATCCATTTCAAACCCGGAT 60.093 45.455 0.73 0.00 39.19 4.18
431 1498 2.486203 TGTTCGATCCATTTCAAACCCG 59.514 45.455 0.00 0.00 0.00 5.28
433 1500 6.128580 CCAAAATGTTCGATCCATTTCAAACC 60.129 38.462 18.41 0.00 40.62 3.27
434 1501 6.423604 ACCAAAATGTTCGATCCATTTCAAAC 59.576 34.615 18.41 0.00 40.62 2.93
447 1514 0.958091 TCTGGCCACCAAAATGTTCG 59.042 50.000 0.00 0.00 30.80 3.95
449 1516 3.099141 CCTATCTGGCCACCAAAATGTT 58.901 45.455 0.00 0.00 30.80 2.71
452 1519 1.929494 TCCCTATCTGGCCACCAAAAT 59.071 47.619 0.00 0.00 30.80 1.82
454 1521 0.623723 GTCCCTATCTGGCCACCAAA 59.376 55.000 0.00 0.00 30.80 3.28
462 1529 3.756117 GGCTAATTTGGTCCCTATCTGG 58.244 50.000 0.00 0.00 0.00 3.86
465 1532 3.071167 ACTCGGCTAATTTGGTCCCTATC 59.929 47.826 0.00 0.00 0.00 2.08
489 1556 6.119240 AGAGACCAGAAACATCTTCAATCA 57.881 37.500 0.00 0.00 0.00 2.57
560 1696 4.215613 ACGAGGAAAAGCTTGTTTGATACC 59.784 41.667 0.00 0.00 0.00 2.73
565 1701 2.119457 GCACGAGGAAAAGCTTGTTTG 58.881 47.619 0.00 0.00 0.00 2.93
606 1742 2.472695 TTGTTGATTCGTGGCTAGCT 57.527 45.000 15.72 0.00 0.00 3.32
631 1767 7.932335 TCGTGGCTAAAGAGTCAAAATAAAAA 58.068 30.769 0.00 0.00 39.57 1.94
636 1772 5.705441 TGATTCGTGGCTAAAGAGTCAAAAT 59.295 36.000 0.00 0.00 39.57 1.82
638 1774 4.637276 TGATTCGTGGCTAAAGAGTCAAA 58.363 39.130 0.00 0.00 39.57 2.69
663 1799 2.772189 CGAACTTCTCGCGGCAAG 59.228 61.111 6.13 11.35 41.49 4.01
696 1832 1.126113 GTGCACACGTCGGTATTTCTG 59.874 52.381 13.17 0.00 0.00 3.02
750 2459 1.074872 GTACACGTTAGAGCGCCCAC 61.075 60.000 2.29 0.00 34.88 4.61
793 2513 4.101448 GTGCGCCTCTGGATGGGT 62.101 66.667 4.18 0.00 0.00 4.51
817 2537 2.512286 CACGTGGCATGGCGAGAT 60.512 61.111 15.27 0.00 0.00 2.75
857 2577 1.152383 GGCGCTCGTGGATTAGTTCC 61.152 60.000 7.64 0.00 45.69 3.62
860 2580 1.153628 GTGGCGCTCGTGGATTAGT 60.154 57.895 7.64 0.00 0.00 2.24
936 2657 1.087501 GTTTCGTGCTTCTCATCCCC 58.912 55.000 0.00 0.00 0.00 4.81
937 2658 1.087501 GGTTTCGTGCTTCTCATCCC 58.912 55.000 0.00 0.00 0.00 3.85
939 2660 3.896648 TTTGGTTTCGTGCTTCTCATC 57.103 42.857 0.00 0.00 0.00 2.92
940 2661 3.243401 GGTTTTGGTTTCGTGCTTCTCAT 60.243 43.478 0.00 0.00 0.00 2.90
941 2662 2.098443 GGTTTTGGTTTCGTGCTTCTCA 59.902 45.455 0.00 0.00 0.00 3.27
947 2674 1.656594 GTGTTGGTTTTGGTTTCGTGC 59.343 47.619 0.00 0.00 0.00 5.34
981 2708 2.126424 GACACCGTCGGCTCTCAC 60.126 66.667 12.28 0.00 0.00 3.51
982 2709 3.371063 GGACACCGTCGGCTCTCA 61.371 66.667 12.28 0.00 32.65 3.27
988 2715 0.104855 ATCATCATGGACACCGTCGG 59.895 55.000 10.48 10.48 32.65 4.79
1176 2920 0.952984 GGCAGAAACTCGAGCAGCTT 60.953 55.000 13.61 0.47 0.00 3.74
1199 2943 0.389391 GAGAAATCGGAGATGGCGGA 59.611 55.000 0.00 0.00 45.12 5.54
1200 2944 0.601311 GGAGAAATCGGAGATGGCGG 60.601 60.000 0.00 0.00 45.12 6.13
1201 2945 0.390860 AGGAGAAATCGGAGATGGCG 59.609 55.000 0.00 0.00 45.12 5.69
1202 2946 1.691434 AGAGGAGAAATCGGAGATGGC 59.309 52.381 0.00 0.00 45.12 4.40
1203 2947 3.551863 CGAAGAGGAGAAATCGGAGATGG 60.552 52.174 0.00 0.00 45.12 3.51
1204 2948 3.067461 ACGAAGAGGAGAAATCGGAGATG 59.933 47.826 0.00 0.00 45.12 2.90
1205 2949 3.292460 ACGAAGAGGAGAAATCGGAGAT 58.708 45.455 0.00 0.00 45.12 2.75
1206 2950 2.724454 ACGAAGAGGAGAAATCGGAGA 58.276 47.619 0.00 0.00 45.75 3.71
1449 3194 0.818296 CACCACGGTTCACCCAAAAA 59.182 50.000 0.00 0.00 0.00 1.94
1450 3195 0.323542 ACACCACGGTTCACCCAAAA 60.324 50.000 0.00 0.00 0.00 2.44
1451 3196 1.032657 CACACCACGGTTCACCCAAA 61.033 55.000 0.00 0.00 0.00 3.28
1452 3197 1.452289 CACACCACGGTTCACCCAA 60.452 57.895 0.00 0.00 0.00 4.12
1453 3198 2.190843 CACACCACGGTTCACCCA 59.809 61.111 0.00 0.00 0.00 4.51
1454 3199 2.593436 CCACACCACGGTTCACCC 60.593 66.667 0.00 0.00 0.00 4.61
1467 3212 2.954684 GCGATCCACCACCTCCACA 61.955 63.158 0.00 0.00 0.00 4.17
1470 3219 4.530857 CGGCGATCCACCACCTCC 62.531 72.222 0.00 0.00 0.00 4.30
1495 3582 3.449227 CTACGGCGGGCAGAGACA 61.449 66.667 13.24 0.00 0.00 3.41
1511 3598 0.250770 AGCATGCATGATGATCCGCT 60.251 50.000 30.64 14.24 33.31 5.52
1515 3602 4.237724 CATTTCCAGCATGCATGATGATC 58.762 43.478 39.07 18.27 46.44 2.92
1516 3603 3.006859 CCATTTCCAGCATGCATGATGAT 59.993 43.478 39.07 24.86 46.44 2.45
1518 3605 2.754472 CCATTTCCAGCATGCATGATG 58.246 47.619 32.82 32.82 43.38 3.07
1598 3710 9.915629 ATCCTTTAGATACATCGTCATTAGAAC 57.084 33.333 0.00 0.00 31.60 3.01
1635 3768 5.102313 TGCTACTCACACAGAATAACGATG 58.898 41.667 0.00 0.00 0.00 3.84
1642 3775 8.340618 ACAAATTAATGCTACTCACACAGAAT 57.659 30.769 0.00 0.00 0.00 2.40
1657 3790 7.095691 ACTGCCACGATGAAAAACAAATTAATG 60.096 33.333 0.00 0.00 0.00 1.90
1671 3804 0.388520 CGTTCTCACTGCCACGATGA 60.389 55.000 0.00 0.00 34.49 2.92
1689 3822 4.554723 GCATAACCATAGCTAAACTTGCCG 60.555 45.833 0.00 0.00 0.00 5.69
1850 3989 8.870075 ACTCTGAACCTAAAATGCTTATTTCT 57.130 30.769 0.00 0.00 0.00 2.52
1902 4041 5.858381 TCACAGATCAGTAATTAGCCATCC 58.142 41.667 0.00 0.00 0.00 3.51
1913 4052 1.067669 GCCTGCGATCACAGATCAGTA 59.932 52.381 12.38 0.37 40.25 2.74
1924 4063 2.903855 CCACCATGGCCTGCGATC 60.904 66.667 13.04 0.00 0.00 3.69
1926 4065 4.100084 CTCCACCATGGCCTGCGA 62.100 66.667 13.04 2.84 37.47 5.10
2026 4165 8.349245 TCAGTGAAATGTTTAACAGTACCAATG 58.651 33.333 16.03 16.03 31.47 2.82
2042 4181 9.932699 GAGAATGATGTCTAATTCAGTGAAATG 57.067 33.333 10.14 3.43 35.63 2.32
2048 4187 7.768120 GGTCAAGAGAATGATGTCTAATTCAGT 59.232 37.037 0.00 0.00 35.63 3.41
2073 4215 3.304928 GGCAATGTGTTCTGAACTTCTGG 60.305 47.826 20.18 9.22 0.00 3.86
2074 4216 3.607775 CGGCAATGTGTTCTGAACTTCTG 60.608 47.826 20.18 12.97 0.00 3.02
2075 4217 2.549754 CGGCAATGTGTTCTGAACTTCT 59.450 45.455 20.18 3.29 0.00 2.85
2076 4218 2.548057 TCGGCAATGTGTTCTGAACTTC 59.452 45.455 20.18 13.68 0.00 3.01
2077 4219 2.571212 TCGGCAATGTGTTCTGAACTT 58.429 42.857 20.18 5.05 0.00 2.66
2078 4220 2.254546 TCGGCAATGTGTTCTGAACT 57.745 45.000 20.18 0.00 0.00 3.01
2079 4221 2.032799 TGTTCGGCAATGTGTTCTGAAC 59.967 45.455 13.49 13.49 43.05 3.18
2080 4222 2.293170 TGTTCGGCAATGTGTTCTGAA 58.707 42.857 0.00 0.00 0.00 3.02
2095 4237 5.231991 GCCCAATTAAGCAACAATATGTTCG 59.768 40.000 0.00 0.00 38.77 3.95
2104 4246 2.591923 TCAGTGCCCAATTAAGCAACA 58.408 42.857 3.32 0.00 41.48 3.33
2105 4247 3.056607 ACATCAGTGCCCAATTAAGCAAC 60.057 43.478 3.32 0.00 41.48 4.17
2190 4332 1.335132 GGGTGGTATCGGCCTTCAGA 61.335 60.000 0.00 0.00 0.00 3.27
2363 4565 2.617274 GCACAACTGGAACCGGAGC 61.617 63.158 9.46 0.00 0.00 4.70
2396 4636 1.153349 GAGGGTCACGATTCAGGCC 60.153 63.158 0.00 0.00 0.00 5.19
2406 4646 3.561725 CAGTTGAAAAGACTGAGGGTCAC 59.438 47.826 0.00 0.00 45.72 3.67
2415 4655 6.370166 GCTATAGCTGAACAGTTGAAAAGACT 59.630 38.462 17.75 0.00 38.21 3.24
2416 4656 6.402658 GGCTATAGCTGAACAGTTGAAAAGAC 60.403 42.308 23.53 0.00 41.70 3.01
2465 4705 2.377073 CTCTGCCTCTCATCTGTCTGA 58.623 52.381 0.00 0.00 0.00 3.27
2477 4717 1.550072 GCATCCTCTATCCTCTGCCTC 59.450 57.143 0.00 0.00 0.00 4.70
2510 4750 0.957395 GACACTGACCTGCCCACATG 60.957 60.000 0.00 0.00 0.00 3.21
2547 4789 1.062886 TCCAAGATCCAGGACCGATCT 60.063 52.381 6.16 6.16 46.69 2.75
2549 4791 1.123928 GTCCAAGATCCAGGACCGAT 58.876 55.000 18.85 0.00 46.79 4.18
2559 4801 4.394300 CCACTGAACAATGAGTCCAAGATC 59.606 45.833 0.00 0.00 0.00 2.75
2583 4825 5.063204 GCCATGTACCTGCAGATTACATTA 58.937 41.667 26.27 10.51 34.82 1.90
2721 4973 3.260884 TGGAAGGTAGTTTCAGTGGCTAG 59.739 47.826 0.00 0.00 0.00 3.42
2724 4976 2.552743 GTTGGAAGGTAGTTTCAGTGGC 59.447 50.000 0.00 0.00 0.00 5.01
2726 4978 4.086706 AGGTTGGAAGGTAGTTTCAGTG 57.913 45.455 0.00 0.00 0.00 3.66
2729 4981 4.080243 TGACAAGGTTGGAAGGTAGTTTCA 60.080 41.667 0.00 0.00 0.00 2.69
2730 4982 4.275196 GTGACAAGGTTGGAAGGTAGTTTC 59.725 45.833 0.00 0.00 0.00 2.78
2731 4983 4.204799 GTGACAAGGTTGGAAGGTAGTTT 58.795 43.478 0.00 0.00 0.00 2.66
2732 4984 3.201266 TGTGACAAGGTTGGAAGGTAGTT 59.799 43.478 0.00 0.00 0.00 2.24
2733 4985 2.775384 TGTGACAAGGTTGGAAGGTAGT 59.225 45.455 0.00 0.00 0.00 2.73
2734 4986 3.485463 TGTGACAAGGTTGGAAGGTAG 57.515 47.619 0.00 0.00 0.00 3.18
2735 4987 3.456644 TCTTGTGACAAGGTTGGAAGGTA 59.543 43.478 23.65 0.00 0.00 3.08
2736 4988 2.241176 TCTTGTGACAAGGTTGGAAGGT 59.759 45.455 23.65 0.00 0.00 3.50
2737 4989 2.618709 GTCTTGTGACAAGGTTGGAAGG 59.381 50.000 23.65 0.00 42.48 3.46
2738 4990 3.971032 GTCTTGTGACAAGGTTGGAAG 57.029 47.619 23.65 0.00 42.48 3.46
2866 5120 1.003223 GTGGTGTGTTTACCTCGTTGC 60.003 52.381 0.00 0.00 41.43 4.17
2904 5158 1.320344 ATCTCGGTTGCTGCGAGGTA 61.320 55.000 0.00 0.00 0.00 3.08
2906 5160 2.169789 CATCTCGGTTGCTGCGAGG 61.170 63.158 0.00 0.00 0.00 4.63
2909 5163 3.092192 CTGCATCTCGGTTGCTGCG 62.092 63.158 0.00 0.00 40.77 5.18
2910 5164 1.300971 TTCTGCATCTCGGTTGCTGC 61.301 55.000 0.00 0.00 40.77 5.25
2913 5167 2.012673 AGAATTCTGCATCTCGGTTGC 58.987 47.619 7.30 0.00 40.55 4.17
2916 5170 3.196469 TCTTCAGAATTCTGCATCTCGGT 59.804 43.478 27.45 0.00 43.46 4.69
2917 5171 3.790091 TCTTCAGAATTCTGCATCTCGG 58.210 45.455 27.45 7.63 43.46 4.63
2918 5172 5.987777 AATCTTCAGAATTCTGCATCTCG 57.012 39.130 27.45 7.98 43.46 4.04
2919 5173 9.881529 GATAAAATCTTCAGAATTCTGCATCTC 57.118 33.333 27.45 11.75 43.46 2.75
2936 5196 4.446371 CTTCCTGCAGACGGATAAAATCT 58.554 43.478 17.39 0.00 0.00 2.40
2937 5197 3.002759 GCTTCCTGCAGACGGATAAAATC 59.997 47.826 17.39 0.00 42.31 2.17
2938 5198 2.945668 GCTTCCTGCAGACGGATAAAAT 59.054 45.455 17.39 0.00 42.31 1.82
2939 5199 2.356135 GCTTCCTGCAGACGGATAAAA 58.644 47.619 17.39 0.00 42.31 1.52
2940 5200 1.406887 GGCTTCCTGCAGACGGATAAA 60.407 52.381 17.39 0.00 45.15 1.40
2941 5201 0.178068 GGCTTCCTGCAGACGGATAA 59.822 55.000 17.39 0.00 45.15 1.75
2943 5203 2.586792 GGCTTCCTGCAGACGGAT 59.413 61.111 17.39 0.00 45.15 4.18
2944 5204 4.069232 CGGCTTCCTGCAGACGGA 62.069 66.667 17.39 1.17 42.05 4.69
2947 5207 2.743928 CCACGGCTTCCTGCAGAC 60.744 66.667 17.39 1.04 45.15 3.51
3185 5449 2.094026 ACATCATCAGACACGCTGCTTA 60.094 45.455 0.00 0.00 44.52 3.09
3192 5456 1.410517 AGGGCTACATCATCAGACACG 59.589 52.381 0.00 0.00 0.00 4.49
3226 5490 1.871080 AGACTGGAGTGAAGCAAACG 58.129 50.000 0.00 0.00 0.00 3.60
3227 5491 3.067833 GGTAGACTGGAGTGAAGCAAAC 58.932 50.000 0.00 0.00 0.00 2.93
3259 5523 5.737860 ACAGCTGAGAACATACATGATCAA 58.262 37.500 23.35 0.00 32.67 2.57
3300 5564 4.870426 TCGGAGAAGCACATTTACAAGATC 59.130 41.667 0.00 0.00 0.00 2.75
3301 5565 4.832248 TCGGAGAAGCACATTTACAAGAT 58.168 39.130 0.00 0.00 0.00 2.40
3303 5567 4.872691 AGATCGGAGAAGCACATTTACAAG 59.127 41.667 0.00 0.00 43.58 3.16
3316 5580 1.351430 CGCGCAAACAGATCGGAGAA 61.351 55.000 8.75 0.00 43.58 2.87
3501 5778 0.179018 GTCAAGTGCCCTGTGAACCT 60.179 55.000 0.00 0.00 0.00 3.50
3573 5858 6.119240 ACCTGAACTCTCATCAAAATCAGA 57.881 37.500 0.00 0.00 35.91 3.27
3590 5877 4.043310 AGTGATCCAATTCCTCAACCTGAA 59.957 41.667 0.00 0.00 0.00 3.02
3653 5940 7.230510 ACATTTGACTTGCTATGGTTGACTTAA 59.769 33.333 0.00 0.00 0.00 1.85
3682 5969 0.181350 AGATTCGGGGTTGATGGAGC 59.819 55.000 0.00 0.00 0.00 4.70
3693 5980 1.971481 TGCCATCATCAAGATTCGGG 58.029 50.000 0.00 0.00 33.72 5.14
3696 5983 3.568430 TGCTCATGCCATCATCAAGATTC 59.432 43.478 0.00 0.00 38.71 2.52
3697 5984 3.562182 TGCTCATGCCATCATCAAGATT 58.438 40.909 0.00 0.00 38.71 2.40
3698 5985 3.223674 TGCTCATGCCATCATCAAGAT 57.776 42.857 0.00 0.00 38.71 2.40
3699 5986 2.721425 TGCTCATGCCATCATCAAGA 57.279 45.000 0.00 0.00 38.71 3.02
3700 5987 2.229062 GGATGCTCATGCCATCATCAAG 59.771 50.000 20.54 0.00 37.61 3.02
3701 5988 2.158519 AGGATGCTCATGCCATCATCAA 60.159 45.455 20.54 0.00 37.61 2.57
3741 6031 2.592102 ACCTGAATGTCATTGCACCT 57.408 45.000 1.88 0.00 0.00 4.00
3745 6035 3.567164 CCCAGATACCTGAATGTCATTGC 59.433 47.826 1.88 0.00 43.02 3.56
3834 6124 2.170166 TGCATGAAACATTCTGTCCCC 58.830 47.619 0.00 0.00 0.00 4.81
3885 6175 2.754552 TCCAAGAAAATGAGCATTCCCG 59.245 45.455 0.00 0.00 0.00 5.14
3890 6180 5.302568 TGAACTGTTCCAAGAAAATGAGCAT 59.697 36.000 17.26 0.00 0.00 3.79
3971 6262 0.111253 AGAAAGGTGGGCAGTGAAGG 59.889 55.000 0.00 0.00 0.00 3.46
3976 6267 2.644798 ACTCATAAGAAAGGTGGGCAGT 59.355 45.455 0.00 0.00 0.00 4.40
3998 6289 3.384146 TGCTCCTTTTGAAGTTTGATGCA 59.616 39.130 0.00 0.00 0.00 3.96
4050 6341 5.551760 AGTACAACATAACAGATTGCAGC 57.448 39.130 0.00 0.00 0.00 5.25
4071 6362 3.054802 AGAAAGGTGGGCAGTGAAGATAG 60.055 47.826 0.00 0.00 0.00 2.08
4096 6387 8.477419 TCCTTTTGAAGTTTGATGGAACTTAT 57.523 30.769 3.26 0.00 46.73 1.73
4102 6393 7.723616 TGATTACTCCTTTTGAAGTTTGATGGA 59.276 33.333 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.