Multiple sequence alignment - TraesCS7B01G325400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G325400 chr7B 100.000 4236 0 0 1 4236 577757128 577752893 0.000000e+00 7823
1 TraesCS7B01G325400 chr7B 83.597 506 72 7 2849 3353 577758083 577758578 8.300000e-127 464
2 TraesCS7B01G325400 chr7D 91.352 3862 171 63 422 4236 535756077 535752332 0.000000e+00 5131
3 TraesCS7B01G325400 chr7D 86.223 842 104 9 2696 3535 535757319 535758150 0.000000e+00 902
4 TraesCS7B01G325400 chr7D 89.130 138 5 1 14 151 535756314 535756187 3.390000e-36 163
5 TraesCS7B01G325400 chr7A 92.298 3246 140 52 676 3886 617688392 617691562 0.000000e+00 4508
6 TraesCS7B01G325400 chr7A 84.606 838 118 8 2699 3535 617687152 617686325 0.000000e+00 822
7 TraesCS7B01G325400 chr7A 88.809 277 18 9 3863 4128 617691582 617691856 1.140000e-85 327
8 TraesCS7B01G325400 chr7A 95.192 104 5 0 4130 4233 617692299 617692402 9.420000e-37 165
9 TraesCS7B01G325400 chr6D 75.947 2033 431 45 1161 3173 75377274 75375280 0.000000e+00 992
10 TraesCS7B01G325400 chr6B 76.382 1863 398 34 1161 3008 149060031 149058196 0.000000e+00 965


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G325400 chr7B 577752893 577757128 4235 True 7823.000000 7823 100.000000 1 4236 1 chr7B.!!$R1 4235
1 TraesCS7B01G325400 chr7D 535752332 535756314 3982 True 2647.000000 5131 90.241000 14 4236 2 chr7D.!!$R1 4222
2 TraesCS7B01G325400 chr7D 535757319 535758150 831 False 902.000000 902 86.223000 2696 3535 1 chr7D.!!$F1 839
3 TraesCS7B01G325400 chr7A 617688392 617692402 4010 False 1666.666667 4508 92.099667 676 4233 3 chr7A.!!$F1 3557
4 TraesCS7B01G325400 chr7A 617686325 617687152 827 True 822.000000 822 84.606000 2699 3535 1 chr7A.!!$R1 836
5 TraesCS7B01G325400 chr6D 75375280 75377274 1994 True 992.000000 992 75.947000 1161 3173 1 chr6D.!!$R1 2012
6 TraesCS7B01G325400 chr6B 149058196 149060031 1835 True 965.000000 965 76.382000 1161 3008 1 chr6B.!!$R1 1847

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
192 193 0.033920 AGGGGACGACGTAAACAACC 59.966 55.0 0.0 0.0 0.0 3.77 F
1027 1072 0.171007 ATTGGTTCCTGCGCGAATTG 59.829 50.0 12.1 0.0 0.0 2.32 F
2294 2357 0.475632 TGAAGAGGGTGGTGGATGGT 60.476 55.0 0.0 0.0 0.0 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1081 1126 1.675310 CCCTCCAAATGCGCACTCA 60.675 57.895 14.90 0.0 0.00 3.41 R
2519 2582 0.918983 CCTCCAGGGCCTTGACAATA 59.081 55.000 18.01 0.0 0.00 1.90 R
4027 4151 0.173708 GTAGAACTGGAGCCCTGTCG 59.826 60.000 4.63 0.0 34.63 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.588877 GTGGCATCCATCCGTCCG 60.589 66.667 0.00 0.00 35.28 4.79
37 38 1.000359 TCCGTCCATCCAGCAGAGA 60.000 57.895 0.00 0.00 0.00 3.10
86 87 3.213249 AGTGCAAGCGTACTGTACTAC 57.787 47.619 15.35 7.85 36.63 2.73
87 88 2.818432 AGTGCAAGCGTACTGTACTACT 59.182 45.455 15.35 9.85 36.63 2.57
88 89 4.005650 AGTGCAAGCGTACTGTACTACTA 58.994 43.478 15.35 0.00 36.63 1.82
89 90 4.639310 AGTGCAAGCGTACTGTACTACTAT 59.361 41.667 15.35 2.85 36.63 2.12
90 91 5.819379 AGTGCAAGCGTACTGTACTACTATA 59.181 40.000 15.35 1.97 36.63 1.31
151 152 2.128128 GTGAAACTCGCACGCACG 60.128 61.111 0.00 0.00 0.00 5.34
153 154 3.033764 GAAACTCGCACGCACGGA 61.034 61.111 0.00 0.00 0.00 4.69
154 155 3.277742 GAAACTCGCACGCACGGAC 62.278 63.158 0.00 0.00 0.00 4.79
160 161 4.059459 GCACGCACGGACGAACAG 62.059 66.667 6.34 0.00 36.70 3.16
161 162 2.657296 CACGCACGGACGAACAGT 60.657 61.111 6.34 0.00 36.70 3.55
162 163 2.657296 ACGCACGGACGAACAGTG 60.657 61.111 6.34 11.29 44.99 3.66
163 164 3.403057 CGCACGGACGAACAGTGG 61.403 66.667 15.26 6.06 43.06 4.00
164 165 2.279918 GCACGGACGAACAGTGGT 60.280 61.111 15.26 0.00 43.06 4.16
165 166 1.007038 GCACGGACGAACAGTGGTA 60.007 57.895 15.26 0.00 43.06 3.25
166 167 0.598158 GCACGGACGAACAGTGGTAA 60.598 55.000 15.26 0.00 43.06 2.85
167 168 1.855513 CACGGACGAACAGTGGTAAA 58.144 50.000 0.00 0.00 40.12 2.01
168 169 1.523934 CACGGACGAACAGTGGTAAAC 59.476 52.381 0.00 0.00 40.12 2.01
169 170 1.136695 ACGGACGAACAGTGGTAAACA 59.863 47.619 0.00 0.00 0.00 2.83
170 171 2.224113 ACGGACGAACAGTGGTAAACAT 60.224 45.455 0.00 0.00 0.00 2.71
171 172 2.410730 CGGACGAACAGTGGTAAACATC 59.589 50.000 0.00 0.00 0.00 3.06
172 173 3.395639 GGACGAACAGTGGTAAACATCA 58.604 45.455 0.00 0.00 0.00 3.07
173 174 3.810941 GGACGAACAGTGGTAAACATCAA 59.189 43.478 0.00 0.00 0.00 2.57
174 175 4.084013 GGACGAACAGTGGTAAACATCAAG 60.084 45.833 0.00 0.00 0.00 3.02
175 176 3.813166 ACGAACAGTGGTAAACATCAAGG 59.187 43.478 0.00 0.00 0.00 3.61
176 177 3.188460 CGAACAGTGGTAAACATCAAGGG 59.812 47.826 0.00 0.00 0.00 3.95
177 178 3.154827 ACAGTGGTAAACATCAAGGGG 57.845 47.619 0.00 0.00 0.00 4.79
178 179 2.714250 ACAGTGGTAAACATCAAGGGGA 59.286 45.455 0.00 0.00 0.00 4.81
179 180 3.081804 CAGTGGTAAACATCAAGGGGAC 58.918 50.000 0.00 0.00 0.00 4.46
180 181 2.081462 GTGGTAAACATCAAGGGGACG 58.919 52.381 0.00 0.00 0.00 4.79
181 182 1.979308 TGGTAAACATCAAGGGGACGA 59.021 47.619 0.00 0.00 0.00 4.20
182 183 2.289819 TGGTAAACATCAAGGGGACGAC 60.290 50.000 0.00 0.00 0.00 4.34
183 184 1.997606 GTAAACATCAAGGGGACGACG 59.002 52.381 0.00 0.00 0.00 5.12
184 185 0.395312 AAACATCAAGGGGACGACGT 59.605 50.000 0.00 0.00 0.00 4.34
185 186 1.259609 AACATCAAGGGGACGACGTA 58.740 50.000 0.00 0.00 0.00 3.57
186 187 1.259609 ACATCAAGGGGACGACGTAA 58.740 50.000 0.00 0.00 0.00 3.18
187 188 1.619827 ACATCAAGGGGACGACGTAAA 59.380 47.619 0.00 0.00 0.00 2.01
188 189 1.997606 CATCAAGGGGACGACGTAAAC 59.002 52.381 0.00 0.00 0.00 2.01
189 190 1.039068 TCAAGGGGACGACGTAAACA 58.961 50.000 0.00 0.00 0.00 2.83
190 191 1.411977 TCAAGGGGACGACGTAAACAA 59.588 47.619 0.00 0.00 0.00 2.83
191 192 1.528161 CAAGGGGACGACGTAAACAAC 59.472 52.381 0.00 0.00 0.00 3.32
192 193 0.033920 AGGGGACGACGTAAACAACC 59.966 55.000 0.00 0.00 0.00 3.77
193 194 0.033920 GGGGACGACGTAAACAACCT 59.966 55.000 0.00 0.00 0.00 3.50
194 195 1.422388 GGGACGACGTAAACAACCTC 58.578 55.000 0.00 0.00 0.00 3.85
195 196 1.055338 GGACGACGTAAACAACCTCG 58.945 55.000 0.00 0.00 40.91 4.63
196 197 1.055338 GACGACGTAAACAACCTCGG 58.945 55.000 0.00 0.00 39.87 4.63
197 198 0.667993 ACGACGTAAACAACCTCGGA 59.332 50.000 0.00 0.00 39.87 4.55
198 199 1.066908 ACGACGTAAACAACCTCGGAA 59.933 47.619 0.00 0.00 39.87 4.30
199 200 1.453148 CGACGTAAACAACCTCGGAAC 59.547 52.381 0.00 0.00 34.29 3.62
200 201 1.794701 GACGTAAACAACCTCGGAACC 59.205 52.381 0.00 0.00 0.00 3.62
201 202 0.785979 CGTAAACAACCTCGGAACCG 59.214 55.000 6.94 6.94 41.35 4.44
232 233 3.660111 GCACGGTCAACCACTGGC 61.660 66.667 0.00 0.00 35.37 4.85
268 275 3.719144 CGACGGGCACGGGTTTTC 61.719 66.667 15.46 0.00 46.48 2.29
269 276 3.359523 GACGGGCACGGGTTTTCC 61.360 66.667 15.46 0.00 46.48 3.13
270 277 3.837570 GACGGGCACGGGTTTTCCT 62.838 63.158 15.46 0.00 46.48 3.36
271 278 3.053896 CGGGCACGGGTTTTCCTC 61.054 66.667 0.00 0.00 40.46 3.71
272 279 3.053896 GGGCACGGGTTTTCCTCG 61.054 66.667 0.00 0.00 40.46 4.63
273 280 3.733960 GGCACGGGTTTTCCTCGC 61.734 66.667 0.00 0.00 40.46 5.03
274 281 3.733960 GCACGGGTTTTCCTCGCC 61.734 66.667 0.00 0.00 40.46 5.54
275 282 2.281208 CACGGGTTTTCCTCGCCA 60.281 61.111 0.00 0.00 40.46 5.69
276 283 2.032071 ACGGGTTTTCCTCGCCAG 59.968 61.111 0.00 0.00 40.46 4.85
277 284 3.431725 CGGGTTTTCCTCGCCAGC 61.432 66.667 0.00 0.00 40.46 4.85
278 285 2.282180 GGGTTTTCCTCGCCAGCA 60.282 61.111 0.00 0.00 40.46 4.41
279 286 2.626780 GGGTTTTCCTCGCCAGCAC 61.627 63.158 0.00 0.00 40.46 4.40
280 287 1.600916 GGTTTTCCTCGCCAGCACT 60.601 57.895 0.00 0.00 36.94 4.40
281 288 1.576421 GTTTTCCTCGCCAGCACTG 59.424 57.895 0.00 0.00 0.00 3.66
282 289 2.260869 TTTTCCTCGCCAGCACTGC 61.261 57.895 0.00 0.00 0.00 4.40
283 290 4.704833 TTCCTCGCCAGCACTGCC 62.705 66.667 0.00 0.00 0.00 4.85
308 315 3.962421 ATCGGCCGGTCGATCGAC 61.962 66.667 36.88 34.70 45.43 4.20
337 344 4.742201 CACGCGGTGCCTGCTACT 62.742 66.667 12.47 0.00 0.00 2.57
338 345 4.742201 ACGCGGTGCCTGCTACTG 62.742 66.667 12.47 0.00 0.00 2.74
340 347 4.767255 GCGGTGCCTGCTACTGCT 62.767 66.667 14.26 0.00 44.88 4.24
341 348 2.892640 CGGTGCCTGCTACTGCTA 59.107 61.111 0.00 0.00 40.48 3.49
342 349 1.227089 CGGTGCCTGCTACTGCTAG 60.227 63.158 0.00 0.00 40.48 3.42
343 350 1.522580 GGTGCCTGCTACTGCTAGC 60.523 63.158 8.10 8.10 45.19 3.42
344 351 1.522580 GTGCCTGCTACTGCTAGCC 60.523 63.158 13.29 0.00 44.45 3.93
345 352 1.989508 TGCCTGCTACTGCTAGCCA 60.990 57.895 13.29 0.95 44.45 4.75
346 353 1.227497 GCCTGCTACTGCTAGCCAG 60.227 63.158 13.29 11.38 44.45 4.85
347 354 1.227497 CCTGCTACTGCTAGCCAGC 60.227 63.158 20.38 20.38 44.45 4.85
396 403 4.344474 CGCGGCCGTCTATCCCTC 62.344 72.222 28.70 5.16 0.00 4.30
397 404 3.992317 GCGGCCGTCTATCCCTCC 61.992 72.222 28.70 0.93 0.00 4.30
398 405 3.303928 CGGCCGTCTATCCCTCCC 61.304 72.222 19.50 0.00 0.00 4.30
399 406 2.923568 GGCCGTCTATCCCTCCCC 60.924 72.222 0.00 0.00 0.00 4.81
400 407 2.122989 GCCGTCTATCCCTCCCCA 60.123 66.667 0.00 0.00 0.00 4.96
403 410 1.115930 CCGTCTATCCCTCCCCAGTG 61.116 65.000 0.00 0.00 0.00 3.66
440 447 4.332543 AGAGGGCCACGGGAGGAA 62.333 66.667 6.18 0.00 0.00 3.36
441 448 3.327404 GAGGGCCACGGGAGGAAA 61.327 66.667 6.18 0.00 0.00 3.13
442 449 2.856988 AGGGCCACGGGAGGAAAA 60.857 61.111 6.18 0.00 0.00 2.29
443 450 2.361230 GGGCCACGGGAGGAAAAG 60.361 66.667 4.39 0.00 0.00 2.27
444 451 3.062466 GGCCACGGGAGGAAAAGC 61.062 66.667 0.00 0.00 0.00 3.51
452 459 2.045242 GAGGAAAAGCCCCCGACC 60.045 66.667 0.00 0.00 37.37 4.79
526 533 2.437716 ATTACCCAACCTGCGGCG 60.438 61.111 0.51 0.51 0.00 6.46
575 586 2.769893 CCAGCCCCACAATTTCTTTTG 58.230 47.619 0.00 0.00 0.00 2.44
584 595 5.810074 CCCACAATTTCTTTTGTTTTCGACT 59.190 36.000 0.00 0.00 37.73 4.18
585 596 6.312672 CCCACAATTTCTTTTGTTTTCGACTT 59.687 34.615 0.00 0.00 37.73 3.01
586 597 7.148490 CCCACAATTTCTTTTGTTTTCGACTTT 60.148 33.333 0.00 0.00 37.73 2.66
587 598 7.897800 CCACAATTTCTTTTGTTTTCGACTTTC 59.102 33.333 0.00 0.00 37.73 2.62
588 599 7.626815 CACAATTTCTTTTGTTTTCGACTTTCG 59.373 33.333 0.00 0.00 37.73 3.46
589 600 7.539366 ACAATTTCTTTTGTTTTCGACTTTCGA 59.461 29.630 0.00 0.00 40.92 3.71
616 627 4.263572 CGCCCCAACCACAGACCA 62.264 66.667 0.00 0.00 0.00 4.02
621 632 1.073199 CCAACCACAGACCAGACCC 59.927 63.158 0.00 0.00 0.00 4.46
622 633 1.073199 CAACCACAGACCAGACCCC 59.927 63.158 0.00 0.00 0.00 4.95
623 634 1.385347 AACCACAGACCAGACCCCA 60.385 57.895 0.00 0.00 0.00 4.96
624 635 1.418908 AACCACAGACCAGACCCCAG 61.419 60.000 0.00 0.00 0.00 4.45
625 636 1.536418 CCACAGACCAGACCCCAGA 60.536 63.158 0.00 0.00 0.00 3.86
626 637 1.674057 CACAGACCAGACCCCAGAC 59.326 63.158 0.00 0.00 0.00 3.51
627 638 1.536662 ACAGACCAGACCCCAGACC 60.537 63.158 0.00 0.00 0.00 3.85
628 639 1.536418 CAGACCAGACCCCAGACCA 60.536 63.158 0.00 0.00 0.00 4.02
629 640 1.229336 AGACCAGACCCCAGACCAG 60.229 63.158 0.00 0.00 0.00 4.00
630 641 2.203998 ACCAGACCCCAGACCAGG 60.204 66.667 0.00 0.00 0.00 4.45
728 761 0.400594 CCGTCCAAAAACTCTCCCCT 59.599 55.000 0.00 0.00 0.00 4.79
734 767 2.296190 CCAAAAACTCTCCCCTTTTCCG 59.704 50.000 0.00 0.00 0.00 4.30
735 768 1.617322 AAAACTCTCCCCTTTTCCGC 58.383 50.000 0.00 0.00 0.00 5.54
736 769 0.251209 AAACTCTCCCCTTTTCCGCC 60.251 55.000 0.00 0.00 0.00 6.13
737 770 1.134438 AACTCTCCCCTTTTCCGCCT 61.134 55.000 0.00 0.00 0.00 5.52
738 771 1.222113 CTCTCCCCTTTTCCGCCTC 59.778 63.158 0.00 0.00 0.00 4.70
739 772 2.258748 CTCTCCCCTTTTCCGCCTCC 62.259 65.000 0.00 0.00 0.00 4.30
740 773 3.335729 TCCCCTTTTCCGCCTCCC 61.336 66.667 0.00 0.00 0.00 4.30
741 774 4.442454 CCCCTTTTCCGCCTCCCC 62.442 72.222 0.00 0.00 0.00 4.81
742 775 4.442454 CCCTTTTCCGCCTCCCCC 62.442 72.222 0.00 0.00 0.00 5.40
774 807 1.848886 AACCTAAACCTCAGCCCCCG 61.849 60.000 0.00 0.00 0.00 5.73
779 812 1.716028 AAACCTCAGCCCCCGTTCTT 61.716 55.000 0.00 0.00 0.00 2.52
791 824 2.585153 GTTCTTCTCCCCGCTCCC 59.415 66.667 0.00 0.00 0.00 4.30
869 907 4.065281 CCACCTCCACGGACGGAC 62.065 72.222 8.13 0.00 36.31 4.79
870 908 4.415332 CACCTCCACGGACGGACG 62.415 72.222 8.13 0.00 40.31 4.79
914 952 1.543896 TTTTCCCCCTCCCTCCCTG 60.544 63.158 0.00 0.00 0.00 4.45
921 959 4.465446 CTCCCTCCCTGCCTCCGA 62.465 72.222 0.00 0.00 0.00 4.55
925 963 2.835431 CTCCCTGCCTCCGACGAT 60.835 66.667 0.00 0.00 0.00 3.73
926 964 1.528542 CTCCCTGCCTCCGACGATA 60.529 63.158 0.00 0.00 0.00 2.92
927 965 1.076559 TCCCTGCCTCCGACGATAA 60.077 57.895 0.00 0.00 0.00 1.75
928 966 1.107538 TCCCTGCCTCCGACGATAAG 61.108 60.000 0.00 0.00 0.00 1.73
931 969 1.001597 CCTGCCTCCGACGATAAGTAC 60.002 57.143 0.00 0.00 0.00 2.73
933 971 0.659711 GCCTCCGACGATAAGTACGC 60.660 60.000 0.00 0.00 0.00 4.42
938 983 1.329906 CCGACGATAAGTACGCAGTCT 59.670 52.381 0.00 0.00 43.93 3.24
954 999 2.747855 CTCTTGCAAGGGACGCCC 60.748 66.667 22.43 6.80 45.90 6.13
978 1023 4.717313 GAGTTCCCACCGGCACCC 62.717 72.222 0.00 0.00 0.00 4.61
991 1036 3.787001 CACCCCCTCGCTCCCTTC 61.787 72.222 0.00 0.00 0.00 3.46
996 1041 3.839432 CCTCGCTCCCTTCCGGTC 61.839 72.222 0.00 0.00 0.00 4.79
997 1042 3.839432 CTCGCTCCCTTCCGGTCC 61.839 72.222 0.00 0.00 0.00 4.46
1000 1045 4.144703 GCTCCCTTCCGGTCCGTC 62.145 72.222 11.06 0.00 0.00 4.79
1027 1072 0.171007 ATTGGTTCCTGCGCGAATTG 59.829 50.000 12.10 0.00 0.00 2.32
1033 1078 4.183686 CTGCGCGAATTGCTGGGG 62.184 66.667 12.10 0.00 43.27 4.96
1037 1082 3.830192 GCGAATTGCTGGGGGCTG 61.830 66.667 0.00 0.00 42.39 4.85
1038 1083 3.830192 CGAATTGCTGGGGGCTGC 61.830 66.667 0.00 0.00 42.39 5.25
1041 1086 4.772231 ATTGCTGGGGGCTGCAGG 62.772 66.667 17.12 0.00 40.46 4.85
1063 1108 4.742201 GACAAGCCCGCTCGCTCA 62.742 66.667 0.00 0.00 38.44 4.26
1065 1110 4.749310 CAAGCCCGCTCGCTCACT 62.749 66.667 0.00 0.00 38.44 3.41
1107 1164 1.604378 CATTTGGAGGGCGAGGTCT 59.396 57.895 0.00 0.00 0.00 3.85
1110 1167 1.415672 TTTGGAGGGCGAGGTCTTGT 61.416 55.000 0.00 0.00 0.00 3.16
1141 1198 1.381851 GGATGGGGATGGATCAGGC 59.618 63.158 0.00 0.00 0.00 4.85
1144 1201 2.849162 GGGGATGGATCAGGCGGA 60.849 66.667 0.00 0.00 0.00 5.54
1150 1207 3.237741 GGATCAGGCGGAGGAGGG 61.238 72.222 0.00 0.00 0.00 4.30
1739 1799 2.659897 GCTATGCAGGAGGACGCG 60.660 66.667 3.53 3.53 0.00 6.01
1746 1806 2.600769 AGGAGGACGCGGACAAGT 60.601 61.111 12.47 0.00 0.00 3.16
1826 1889 2.750350 CTCACCCTTGACCGCCTT 59.250 61.111 0.00 0.00 0.00 4.35
1859 1922 2.580867 CTCAGCTACTGCGTCGCC 60.581 66.667 15.88 0.00 45.42 5.54
1928 1991 1.524621 CGGCCTGGATTACCTGCAG 60.525 63.158 6.78 6.78 42.62 4.41
2192 2255 3.248266 GCTGCTTGATGTGTTTGATTCC 58.752 45.455 0.00 0.00 0.00 3.01
2294 2357 0.475632 TGAAGAGGGTGGTGGATGGT 60.476 55.000 0.00 0.00 0.00 3.55
2358 2421 2.658064 CGCAAAATGCCACCCCCAT 61.658 57.895 0.00 0.00 41.12 4.00
2708 2771 4.096682 CAGTACAAGGACTACTACTCAGCC 59.903 50.000 0.00 0.00 0.00 4.85
2864 2929 3.435275 TGAGATGTACCAGAAGCAGTCT 58.565 45.455 0.00 0.00 36.88 3.24
3065 3131 0.179111 TCATGCCGAAGCTTAGGACG 60.179 55.000 27.71 13.57 40.80 4.79
3213 3282 7.065803 GGATGTACAGTAGTGTTGTGCAATAAT 59.934 37.037 8.85 0.00 42.83 1.28
3275 3344 1.079405 GAAGATCCCGGTTGTGCGA 60.079 57.895 0.00 0.00 0.00 5.10
3614 3688 3.066621 GGCTGTGACAAAAATGACAGTGA 59.933 43.478 0.00 0.00 38.47 3.41
3615 3689 4.261741 GGCTGTGACAAAAATGACAGTGAT 60.262 41.667 0.00 0.00 38.47 3.06
3616 3690 4.913924 GCTGTGACAAAAATGACAGTGATC 59.086 41.667 0.00 0.00 38.47 2.92
3617 3691 5.506151 GCTGTGACAAAAATGACAGTGATCA 60.506 40.000 0.00 0.00 38.47 2.92
3653 3728 5.564550 ACTACATGAGGCAAGAAATCAGTT 58.435 37.500 0.00 0.00 0.00 3.16
3696 3772 7.338800 TCAGCATGTTCTTTCTTTCTCTTTT 57.661 32.000 0.00 0.00 37.40 2.27
3712 3788 5.473039 TCTCTTTTACGCACTAACTTACCC 58.527 41.667 0.00 0.00 0.00 3.69
3876 3959 3.267483 GGTAGCGCCTGAATTTACTGAA 58.733 45.455 2.29 0.00 0.00 3.02
3944 4068 4.821805 GGTCACAGAAGAATGGACTGAAAA 59.178 41.667 0.00 0.00 35.85 2.29
3947 4071 6.205464 GTCACAGAAGAATGGACTGAAAATCA 59.795 38.462 0.00 0.00 35.85 2.57
3957 4081 9.125026 GAATGGACTGAAAATCATACCTTGTAT 57.875 33.333 0.00 0.00 0.00 2.29
3974 4098 0.813610 TATGCCGGCGATGGTTCTTG 60.814 55.000 23.90 0.00 0.00 3.02
4034 4159 2.432628 GACACTTCGCCGACAGGG 60.433 66.667 0.00 0.00 38.20 4.45
4142 4718 6.236017 TGAGCGTCGTCTTAAAAATTTGAT 57.764 33.333 0.00 0.00 0.00 2.57
4145 4721 6.077838 AGCGTCGTCTTAAAAATTTGATGAC 58.922 36.000 14.31 14.31 40.23 3.06
4195 4771 2.686558 TTGTTTAGAGCTTTGCTGCG 57.313 45.000 0.00 0.00 39.88 5.18
4212 4788 4.111916 GCTGCGTGGTTGCAATATAAATT 58.888 39.130 0.59 0.00 45.74 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.124151 GGATGGATGCCACCGCTT 60.124 61.111 0.00 0.00 35.80 4.68
1 2 4.552365 CGGATGGATGCCACCGCT 62.552 66.667 12.19 0.00 39.67 5.52
2 3 4.856801 ACGGATGGATGCCACCGC 62.857 66.667 19.87 2.18 45.19 5.68
3 4 2.588877 GACGGATGGATGCCACCG 60.589 66.667 18.94 18.94 46.01 4.94
4 5 2.203209 GGACGGATGGATGCCACC 60.203 66.667 0.00 0.00 35.80 4.61
5 6 2.588877 CGGACGGATGGATGCCAC 60.589 66.667 0.00 0.00 35.80 5.01
6 7 3.080765 ACGGACGGATGGATGCCA 61.081 61.111 0.00 0.00 38.19 4.92
7 8 2.280186 GACGGACGGATGGATGCC 60.280 66.667 0.00 0.00 0.00 4.40
8 9 2.280186 GGACGGACGGATGGATGC 60.280 66.667 0.00 0.00 0.00 3.91
9 10 0.319900 GATGGACGGACGGATGGATG 60.320 60.000 0.00 0.00 0.00 3.51
10 11 1.472662 GGATGGACGGACGGATGGAT 61.473 60.000 0.00 0.00 0.00 3.41
11 12 2.131709 GGATGGACGGACGGATGGA 61.132 63.158 0.00 0.00 0.00 3.41
12 13 2.369257 CTGGATGGACGGACGGATGG 62.369 65.000 0.00 0.00 0.00 3.51
22 23 0.104671 GCTCTCTCTGCTGGATGGAC 59.895 60.000 0.00 0.00 0.00 4.02
54 55 2.150809 CTTGCACTGTCACGCACTCG 62.151 60.000 0.00 0.00 38.00 4.18
81 82 8.797350 TCTGTTGTTGTACTGCTATAGTAGTA 57.203 34.615 22.39 22.39 42.37 1.82
82 83 7.698506 TCTGTTGTTGTACTGCTATAGTAGT 57.301 36.000 24.29 24.29 42.37 2.73
83 84 9.025020 CAATCTGTTGTTGTACTGCTATAGTAG 57.975 37.037 15.51 15.51 42.37 2.57
84 85 8.745590 TCAATCTGTTGTTGTACTGCTATAGTA 58.254 33.333 0.84 0.00 37.43 1.82
85 86 7.611770 TCAATCTGTTGTTGTACTGCTATAGT 58.388 34.615 0.84 0.00 38.67 2.12
86 87 8.479313 TTCAATCTGTTGTTGTACTGCTATAG 57.521 34.615 0.00 0.00 36.69 1.31
87 88 8.094548 ACTTCAATCTGTTGTTGTACTGCTATA 58.905 33.333 0.00 0.00 36.69 1.31
88 89 6.936900 ACTTCAATCTGTTGTTGTACTGCTAT 59.063 34.615 0.00 0.00 36.69 2.97
89 90 6.202762 CACTTCAATCTGTTGTTGTACTGCTA 59.797 38.462 0.00 0.00 36.69 3.49
90 91 5.008019 CACTTCAATCTGTTGTTGTACTGCT 59.992 40.000 0.00 0.00 36.69 4.24
100 101 3.369147 CCTACGCTCACTTCAATCTGTTG 59.631 47.826 0.00 0.00 36.65 3.33
144 145 2.657296 ACTGTTCGTCCGTGCGTG 60.657 61.111 0.00 0.00 0.00 5.34
151 152 3.395639 TGATGTTTACCACTGTTCGTCC 58.604 45.455 0.00 0.00 0.00 4.79
153 154 3.813166 CCTTGATGTTTACCACTGTTCGT 59.187 43.478 0.00 0.00 0.00 3.85
154 155 3.188460 CCCTTGATGTTTACCACTGTTCG 59.812 47.826 0.00 0.00 0.00 3.95
156 157 3.139397 TCCCCTTGATGTTTACCACTGTT 59.861 43.478 0.00 0.00 0.00 3.16
157 158 2.714250 TCCCCTTGATGTTTACCACTGT 59.286 45.455 0.00 0.00 0.00 3.55
158 159 3.081804 GTCCCCTTGATGTTTACCACTG 58.918 50.000 0.00 0.00 0.00 3.66
160 161 2.081462 CGTCCCCTTGATGTTTACCAC 58.919 52.381 0.00 0.00 0.00 4.16
161 162 1.979308 TCGTCCCCTTGATGTTTACCA 59.021 47.619 0.00 0.00 0.00 3.25
162 163 2.353323 GTCGTCCCCTTGATGTTTACC 58.647 52.381 0.00 0.00 0.00 2.85
163 164 1.997606 CGTCGTCCCCTTGATGTTTAC 59.002 52.381 0.00 0.00 0.00 2.01
164 165 1.619827 ACGTCGTCCCCTTGATGTTTA 59.380 47.619 0.00 0.00 30.35 2.01
165 166 0.395312 ACGTCGTCCCCTTGATGTTT 59.605 50.000 0.00 0.00 30.35 2.83
166 167 1.259609 TACGTCGTCCCCTTGATGTT 58.740 50.000 0.00 0.00 35.95 2.71
167 168 1.259609 TTACGTCGTCCCCTTGATGT 58.740 50.000 0.00 0.00 37.97 3.06
168 169 1.997606 GTTTACGTCGTCCCCTTGATG 59.002 52.381 0.00 0.00 0.00 3.07
169 170 1.619827 TGTTTACGTCGTCCCCTTGAT 59.380 47.619 0.00 0.00 0.00 2.57
170 171 1.039068 TGTTTACGTCGTCCCCTTGA 58.961 50.000 0.00 0.00 0.00 3.02
171 172 1.528161 GTTGTTTACGTCGTCCCCTTG 59.472 52.381 0.00 0.00 0.00 3.61
172 173 1.541015 GGTTGTTTACGTCGTCCCCTT 60.541 52.381 0.00 0.00 0.00 3.95
173 174 0.033920 GGTTGTTTACGTCGTCCCCT 59.966 55.000 0.00 0.00 0.00 4.79
174 175 0.033920 AGGTTGTTTACGTCGTCCCC 59.966 55.000 0.00 0.00 0.00 4.81
175 176 1.422388 GAGGTTGTTTACGTCGTCCC 58.578 55.000 0.00 0.00 32.56 4.46
180 181 1.794701 GGTTCCGAGGTTGTTTACGTC 59.205 52.381 0.00 0.00 38.09 4.34
181 182 1.869342 CGGTTCCGAGGTTGTTTACGT 60.869 52.381 5.19 0.00 0.00 3.57
182 183 0.785979 CGGTTCCGAGGTTGTTTACG 59.214 55.000 5.19 0.00 0.00 3.18
183 184 0.514255 GCGGTTCCGAGGTTGTTTAC 59.486 55.000 15.69 0.00 0.00 2.01
184 185 0.603439 GGCGGTTCCGAGGTTGTTTA 60.603 55.000 15.69 0.00 0.00 2.01
185 186 1.895231 GGCGGTTCCGAGGTTGTTT 60.895 57.895 15.69 0.00 0.00 2.83
186 187 2.281276 GGCGGTTCCGAGGTTGTT 60.281 61.111 15.69 0.00 0.00 2.83
187 188 3.239253 AGGCGGTTCCGAGGTTGT 61.239 61.111 15.69 0.00 40.77 3.32
188 189 2.742372 CAGGCGGTTCCGAGGTTG 60.742 66.667 15.69 3.36 40.77 3.77
189 190 2.920912 TCAGGCGGTTCCGAGGTT 60.921 61.111 15.69 0.00 40.77 3.50
190 191 3.692406 GTCAGGCGGTTCCGAGGT 61.692 66.667 15.69 0.00 40.77 3.85
191 192 3.649277 CTGTCAGGCGGTTCCGAGG 62.649 68.421 15.69 3.45 40.77 4.63
192 193 2.125912 CTGTCAGGCGGTTCCGAG 60.126 66.667 15.69 4.16 40.77 4.63
193 194 4.373116 GCTGTCAGGCGGTTCCGA 62.373 66.667 15.69 0.00 40.77 4.55
194 195 4.680237 TGCTGTCAGGCGGTTCCG 62.680 66.667 6.90 6.90 40.77 4.30
195 196 2.281484 TTGCTGTCAGGCGGTTCC 60.281 61.111 1.14 0.00 34.52 3.62
196 197 2.946762 GTTGCTGTCAGGCGGTTC 59.053 61.111 1.14 0.00 34.52 3.62
197 198 2.972505 CGTTGCTGTCAGGCGGTT 60.973 61.111 1.14 0.00 34.52 4.44
198 199 4.988598 CCGTTGCTGTCAGGCGGT 62.989 66.667 1.14 0.00 37.60 5.68
262 269 1.600916 AGTGCTGGCGAGGAAAACC 60.601 57.895 0.00 0.00 0.00 3.27
263 270 1.576421 CAGTGCTGGCGAGGAAAAC 59.424 57.895 0.00 0.00 0.00 2.43
264 271 2.260869 GCAGTGCTGGCGAGGAAAA 61.261 57.895 8.18 0.00 0.00 2.29
265 272 2.669569 GCAGTGCTGGCGAGGAAA 60.670 61.111 8.18 0.00 0.00 3.13
266 273 4.704833 GGCAGTGCTGGCGAGGAA 62.705 66.667 16.11 0.00 46.08 3.36
320 327 4.742201 AGTAGCAGGCACCGCGTG 62.742 66.667 4.92 4.73 45.60 5.34
321 328 4.742201 CAGTAGCAGGCACCGCGT 62.742 66.667 4.92 0.00 0.00 6.01
323 330 3.371097 TAGCAGTAGCAGGCACCGC 62.371 63.158 0.00 0.00 45.49 5.68
324 331 1.227089 CTAGCAGTAGCAGGCACCG 60.227 63.158 0.00 0.00 45.49 4.94
325 332 4.844420 CTAGCAGTAGCAGGCACC 57.156 61.111 0.00 0.00 45.49 5.01
379 386 4.344474 GAGGGATAGACGGCCGCG 62.344 72.222 28.58 1.99 0.00 6.46
380 387 3.992317 GGAGGGATAGACGGCCGC 61.992 72.222 28.58 18.62 0.00 6.53
381 388 3.303928 GGGAGGGATAGACGGCCG 61.304 72.222 26.86 26.86 0.00 6.13
382 389 2.923568 GGGGAGGGATAGACGGCC 60.924 72.222 0.00 0.00 0.00 6.13
383 390 2.122989 TGGGGAGGGATAGACGGC 60.123 66.667 0.00 0.00 0.00 5.68
384 391 1.115930 CACTGGGGAGGGATAGACGG 61.116 65.000 0.00 0.00 0.00 4.79
385 392 1.115930 CCACTGGGGAGGGATAGACG 61.116 65.000 0.00 0.00 40.01 4.18
386 393 0.031010 ACCACTGGGGAGGGATAGAC 60.031 60.000 1.10 0.00 41.15 2.59
387 394 0.264955 GACCACTGGGGAGGGATAGA 59.735 60.000 1.10 0.00 41.15 1.98
388 395 0.764752 GGACCACTGGGGAGGGATAG 60.765 65.000 1.10 0.00 41.15 2.08
389 396 1.316969 GGACCACTGGGGAGGGATA 59.683 63.158 1.10 0.00 41.15 2.59
390 397 2.042930 GGACCACTGGGGAGGGAT 59.957 66.667 1.10 0.00 41.15 3.85
391 398 4.348495 GGGACCACTGGGGAGGGA 62.348 72.222 1.10 0.00 41.15 4.20
437 444 3.516949 TTGGGTCGGGGGCTTTTCC 62.517 63.158 0.00 0.00 0.00 3.13
438 445 1.532078 TTTGGGTCGGGGGCTTTTC 60.532 57.895 0.00 0.00 0.00 2.29
440 447 2.117423 CTTTGGGTCGGGGGCTTT 59.883 61.111 0.00 0.00 0.00 3.51
441 448 3.182996 ACTTTGGGTCGGGGGCTT 61.183 61.111 0.00 0.00 0.00 4.35
442 449 3.966543 CACTTTGGGTCGGGGGCT 61.967 66.667 0.00 0.00 0.00 5.19
443 450 3.920093 CTCACTTTGGGTCGGGGGC 62.920 68.421 0.00 0.00 0.00 5.80
444 451 1.774894 TTCTCACTTTGGGTCGGGGG 61.775 60.000 0.00 0.00 0.00 5.40
452 459 2.223711 CCGGGTTTTGTTCTCACTTTGG 60.224 50.000 0.00 0.00 0.00 3.28
495 502 1.300233 GTAATCGGAGCCAGCTCGG 60.300 63.158 18.23 18.23 43.59 4.63
584 595 1.673009 GGCGTGGGTGGAATCGAAA 60.673 57.895 0.00 0.00 0.00 3.46
585 596 2.046700 GGCGTGGGTGGAATCGAA 60.047 61.111 0.00 0.00 0.00 3.71
586 597 4.090588 GGGCGTGGGTGGAATCGA 62.091 66.667 0.00 0.00 0.00 3.59
588 599 3.577334 TTGGGGCGTGGGTGGAATC 62.577 63.158 0.00 0.00 0.00 2.52
589 600 3.585428 TTGGGGCGTGGGTGGAAT 61.585 61.111 0.00 0.00 0.00 3.01
590 601 4.589675 GTTGGGGCGTGGGTGGAA 62.590 66.667 0.00 0.00 0.00 3.53
671 682 2.443957 GAAACTGAAGGCACGCACCG 62.444 60.000 0.00 0.00 33.69 4.94
672 683 1.282875 GAAACTGAAGGCACGCACC 59.717 57.895 0.00 0.00 0.00 5.01
673 684 1.082756 CGAAACTGAAGGCACGCAC 60.083 57.895 0.00 0.00 0.00 5.34
674 685 1.227409 TCGAAACTGAAGGCACGCA 60.227 52.632 0.00 0.00 0.00 5.24
744 777 4.079672 TGAGGTTTAGGTTGGACTTGGAAA 60.080 41.667 0.00 0.00 0.00 3.13
745 778 3.460340 TGAGGTTTAGGTTGGACTTGGAA 59.540 43.478 0.00 0.00 0.00 3.53
746 779 3.050089 TGAGGTTTAGGTTGGACTTGGA 58.950 45.455 0.00 0.00 0.00 3.53
747 780 3.412386 CTGAGGTTTAGGTTGGACTTGG 58.588 50.000 0.00 0.00 0.00 3.61
748 781 2.814336 GCTGAGGTTTAGGTTGGACTTG 59.186 50.000 0.00 0.00 0.00 3.16
774 807 2.585153 GGGAGCGGGGAGAAGAAC 59.415 66.667 0.00 0.00 0.00 3.01
799 832 4.486503 CAGGGCAGAGGCAGAGGC 62.487 72.222 0.00 0.00 43.71 4.70
884 922 1.823899 GGGAAAAGGCGATGGCGAT 60.824 57.895 0.00 0.00 41.24 4.58
914 952 0.659711 GCGTACTTATCGTCGGAGGC 60.660 60.000 0.00 0.00 0.00 4.70
918 956 1.329906 AGACTGCGTACTTATCGTCGG 59.670 52.381 0.00 0.00 0.00 4.79
921 959 3.731264 GCAAGAGACTGCGTACTTATCGT 60.731 47.826 0.00 0.00 31.50 3.73
923 961 3.770666 TGCAAGAGACTGCGTACTTATC 58.229 45.455 0.00 0.00 45.74 1.75
924 962 3.868757 TGCAAGAGACTGCGTACTTAT 57.131 42.857 0.00 0.00 45.74 1.73
925 963 3.575630 CTTGCAAGAGACTGCGTACTTA 58.424 45.455 22.31 0.00 45.74 2.24
926 964 2.408050 CTTGCAAGAGACTGCGTACTT 58.592 47.619 22.31 0.00 45.74 2.24
927 965 1.337260 CCTTGCAAGAGACTGCGTACT 60.337 52.381 28.05 0.00 45.74 2.73
928 966 1.071605 CCTTGCAAGAGACTGCGTAC 58.928 55.000 28.05 0.00 45.74 3.67
931 969 1.004560 TCCCTTGCAAGAGACTGCG 60.005 57.895 28.05 8.76 45.74 5.18
933 971 1.294659 GCGTCCCTTGCAAGAGACTG 61.295 60.000 30.71 25.10 32.26 3.51
938 983 4.697756 CGGGCGTCCCTTGCAAGA 62.698 66.667 28.05 6.12 42.67 3.02
954 999 4.078516 GGTGGGAACTCGGGGTCG 62.079 72.222 0.00 0.00 37.82 4.79
974 1019 3.787001 GAAGGGAGCGAGGGGGTG 61.787 72.222 0.00 0.00 0.00 4.61
998 1043 1.749258 GGAACCAATCTGCCGGGAC 60.749 63.158 2.18 0.00 0.00 4.46
999 1044 1.923395 AGGAACCAATCTGCCGGGA 60.923 57.895 2.18 0.00 0.00 5.14
1000 1045 1.750399 CAGGAACCAATCTGCCGGG 60.750 63.158 2.18 0.00 0.00 5.73
1033 1078 3.635268 CTTGTCCCTCCCTGCAGCC 62.635 68.421 8.66 0.00 0.00 4.85
1036 1081 3.650950 GGCTTGTCCCTCCCTGCA 61.651 66.667 0.00 0.00 0.00 4.41
1081 1126 1.675310 CCCTCCAAATGCGCACTCA 60.675 57.895 14.90 0.00 0.00 3.41
1093 1150 2.203788 ACAAGACCTCGCCCTCCA 60.204 61.111 0.00 0.00 0.00 3.86
1144 1201 4.888325 CCATCCTCCGCCCCTCCT 62.888 72.222 0.00 0.00 0.00 3.69
1739 1799 1.973812 GGCAGCCTTGGACTTGTCC 60.974 63.158 12.54 12.54 0.00 4.02
1928 1991 2.512515 GCATCCTGCGTCTGGTCC 60.513 66.667 3.49 0.00 31.71 4.46
2012 2075 3.386592 AGCTTCCGCTCAGCTTCT 58.613 55.556 0.00 0.00 45.82 2.85
2192 2255 3.450457 AGTCCAATCTGAGCTTACTGAGG 59.550 47.826 0.00 0.00 0.00 3.86
2294 2357 6.460123 GCAACTCCTCAAAAATCTCAACAGAA 60.460 38.462 0.00 0.00 30.24 3.02
2358 2421 2.523168 TGGCACTCCACCGTCAGA 60.523 61.111 0.00 0.00 37.47 3.27
2519 2582 0.918983 CCTCCAGGGCCTTGACAATA 59.081 55.000 18.01 0.00 0.00 1.90
2708 2771 2.093235 CCAGCTCTCCCTTAGAAACAGG 60.093 54.545 0.00 0.00 32.46 4.00
2864 2929 1.190643 TGTCTGGTATGATCCACGCA 58.809 50.000 0.00 0.00 33.55 5.24
3065 3131 2.777969 CATGCTTGCAGTCCTCCTC 58.222 57.895 0.87 0.00 0.00 3.71
3134 3200 0.593128 GCAATGTTGAAGCACTCCGT 59.407 50.000 0.00 0.00 0.00 4.69
3170 3239 2.403252 TCCAATCTTTCCGGAGCTTC 57.597 50.000 3.34 0.00 0.00 3.86
3171 3240 2.025887 ACATCCAATCTTTCCGGAGCTT 60.026 45.455 3.34 0.00 30.84 3.74
3172 3241 1.561542 ACATCCAATCTTTCCGGAGCT 59.438 47.619 3.34 0.00 30.84 4.09
3173 3242 2.044123 ACATCCAATCTTTCCGGAGC 57.956 50.000 3.34 0.00 30.84 4.70
3275 3344 4.998033 TCATCGAGCGATTACTATGTCTCT 59.002 41.667 2.12 0.00 31.62 3.10
3410 3480 1.594862 CGAATGCGAAGAGAATGGTCC 59.405 52.381 0.00 0.00 40.82 4.46
3593 3667 4.291540 TCACTGTCATTTTTGTCACAGC 57.708 40.909 0.00 0.00 40.01 4.40
3615 3689 6.820152 CCTCATGTAGTCAGTCAATTGATTGA 59.180 38.462 24.91 24.91 43.94 2.57
3616 3690 6.457934 GCCTCATGTAGTCAGTCAATTGATTG 60.458 42.308 21.48 21.48 39.10 2.67
3617 3691 5.587844 GCCTCATGTAGTCAGTCAATTGATT 59.412 40.000 12.12 4.21 0.00 2.57
3674 3749 7.355778 CGTAAAAGAGAAAGAAAGAACATGCT 58.644 34.615 0.00 0.00 0.00 3.79
3675 3750 6.086896 GCGTAAAAGAGAAAGAAAGAACATGC 59.913 38.462 0.00 0.00 0.00 4.06
3696 3772 4.959723 ACAAAAGGGTAAGTTAGTGCGTA 58.040 39.130 0.00 0.00 0.00 4.42
3861 3944 2.819608 TGCCAGTTCAGTAAATTCAGGC 59.180 45.455 0.00 0.00 39.95 4.85
3876 3959 4.751060 CATTGCAAAAGTCATATGCCAGT 58.249 39.130 1.71 0.00 39.31 4.00
3944 4068 1.608025 CGCCGGCATACAAGGTATGAT 60.608 52.381 28.98 0.00 0.00 2.45
3947 4071 0.685097 ATCGCCGGCATACAAGGTAT 59.315 50.000 28.98 1.91 0.00 2.73
3957 4081 2.745884 CAAGAACCATCGCCGGCA 60.746 61.111 28.98 14.46 0.00 5.69
3974 4098 1.071605 ACTTCAAGATCGCGTTGAGC 58.928 50.000 5.77 0.00 43.95 4.26
4027 4151 0.173708 GTAGAACTGGAGCCCTGTCG 59.826 60.000 4.63 0.00 34.63 4.35
4028 4152 0.537653 GGTAGAACTGGAGCCCTGTC 59.462 60.000 4.63 0.77 34.63 3.51
4142 4718 9.767684 CAGAATTAGCAAATATTTACAACGTCA 57.232 29.630 0.00 0.00 0.00 4.35
4145 4721 9.988350 AGACAGAATTAGCAAATATTTACAACG 57.012 29.630 0.00 0.00 0.00 4.10
4212 4788 6.135290 GCTTTTCCACATACATATTCAGCA 57.865 37.500 0.00 0.00 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.