Multiple sequence alignment - TraesCS7B01G325100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G325100 chr7B 100.000 2910 0 0 1 2910 577374090 577371181 0.000000e+00 5374.0
1 TraesCS7B01G325100 chr7B 100.000 35 0 0 1629 1663 199855743 199855709 6.730000e-07 65.8
2 TraesCS7B01G325100 chr7D 91.964 1991 68 44 549 2494 535659902 535657959 0.000000e+00 2706.0
3 TraesCS7B01G325100 chr7D 80.859 559 84 16 2 551 535663073 535662529 4.490000e-113 418.0
4 TraesCS7B01G325100 chr7D 80.256 547 68 11 2 546 535660866 535660358 2.740000e-100 375.0
5 TraesCS7B01G325100 chr7D 82.447 376 29 12 2528 2903 535657610 535657272 7.890000e-76 294.0
6 TraesCS7B01G325100 chr7D 90.909 121 11 0 562 682 535662042 535661922 2.320000e-36 163.0
7 TraesCS7B01G325100 chr7D 100.000 35 0 0 1629 1663 228985862 228985828 6.730000e-07 65.8
8 TraesCS7B01G325100 chr7A 91.958 1977 71 40 563 2494 617948409 617950342 0.000000e+00 2689.0
9 TraesCS7B01G325100 chr7A 83.649 422 31 13 2491 2908 617950651 617951038 2.130000e-96 363.0
10 TraesCS7B01G325100 chr7A 84.564 298 40 4 174 470 617947601 617947893 1.020000e-74 291.0
11 TraesCS7B01G325100 chr7A 81.481 81 13 2 1629 1708 240956713 240956634 6.730000e-07 65.8
12 TraesCS7B01G325100 chr5A 78.808 151 21 9 1521 1670 487365626 487365486 1.110000e-14 91.6
13 TraesCS7B01G325100 chr5D 78.000 150 22 9 1522 1670 385604677 385604538 1.860000e-12 84.2
14 TraesCS7B01G325100 chr5B 77.941 136 19 9 1536 1670 462883352 462883227 1.120000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G325100 chr7B 577371181 577374090 2909 True 5374.000000 5374 100.000000 1 2910 1 chr7B.!!$R2 2909
1 TraesCS7B01G325100 chr7D 535657272 535663073 5801 True 791.200000 2706 85.287000 2 2903 5 chr7D.!!$R2 2901
2 TraesCS7B01G325100 chr7A 617947601 617951038 3437 False 1114.333333 2689 86.723667 174 2908 3 chr7A.!!$F1 2734

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
359 2569 0.104855 TAGCATGCATCCGAGACACC 59.895 55.0 21.98 0.0 0.0 4.16 F
525 2735 0.458370 CATGATCCGCACGACACTCA 60.458 55.0 0.00 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1469 4221 0.796312 GAGAATTCGCCGTTCTTGCA 59.204 50.000 0.00 0.0 36.13 4.08 R
1989 4757 1.951895 GCCATTGGTGATGTGAGCTGA 60.952 52.381 4.26 0.0 33.71 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 2269 9.636789 GTGGTATTAATTATTGGTAGGAACCTT 57.363 33.333 0.00 0.00 46.91 3.50
78 2288 4.026052 CCTTCCCTACTCAATGCCAATTT 58.974 43.478 0.00 0.00 0.00 1.82
80 2290 5.835280 CCTTCCCTACTCAATGCCAATTTAT 59.165 40.000 0.00 0.00 0.00 1.40
83 2293 9.082313 CTTCCCTACTCAATGCCAATTTATATT 57.918 33.333 0.00 0.00 0.00 1.28
97 2307 8.807667 CCAATTTATATTGTTGGCAAGAGATC 57.192 34.615 0.00 0.00 39.62 2.75
98 2308 8.415553 CCAATTTATATTGTTGGCAAGAGATCA 58.584 33.333 0.00 0.00 39.62 2.92
99 2309 9.241317 CAATTTATATTGTTGGCAAGAGATCAC 57.759 33.333 0.00 0.00 38.10 3.06
100 2310 6.942532 TTATATTGTTGGCAAGAGATCACC 57.057 37.500 0.00 0.00 38.10 4.02
101 2311 2.957402 TTGTTGGCAAGAGATCACCT 57.043 45.000 0.00 0.00 0.00 4.00
102 2312 2.189594 TGTTGGCAAGAGATCACCTG 57.810 50.000 0.00 0.00 0.00 4.00
103 2313 1.271543 TGTTGGCAAGAGATCACCTGG 60.272 52.381 0.00 0.00 0.00 4.45
104 2314 1.003580 GTTGGCAAGAGATCACCTGGA 59.996 52.381 0.00 0.00 0.00 3.86
105 2315 1.361204 TGGCAAGAGATCACCTGGAA 58.639 50.000 0.00 0.00 0.00 3.53
106 2316 1.704628 TGGCAAGAGATCACCTGGAAA 59.295 47.619 0.00 0.00 0.00 3.13
107 2317 2.087646 GGCAAGAGATCACCTGGAAAC 58.912 52.381 0.00 0.00 0.00 2.78
108 2318 2.553028 GGCAAGAGATCACCTGGAAACA 60.553 50.000 0.00 0.00 39.59 2.83
112 2322 5.191426 CAAGAGATCACCTGGAAACATGAT 58.809 41.667 0.00 0.00 41.54 2.45
117 2327 3.689347 TCACCTGGAAACATGATGGAAG 58.311 45.455 0.00 0.00 41.51 3.46
126 2336 0.816825 CATGATGGAAGTGCGGAGGG 60.817 60.000 0.00 0.00 0.00 4.30
129 2339 2.907897 GATGGAAGTGCGGAGGGACG 62.908 65.000 0.00 0.00 39.82 4.79
138 2348 3.319198 GGAGGGACGTGGCAAGGA 61.319 66.667 5.22 0.00 0.00 3.36
145 2355 0.390472 GACGTGGCAAGGAGAAGAGG 60.390 60.000 5.22 0.00 0.00 3.69
153 2363 2.301583 GCAAGGAGAAGAGGTGAAGAGT 59.698 50.000 0.00 0.00 0.00 3.24
160 2370 3.195396 AGAAGAGGTGAAGAGTGAGATGC 59.805 47.826 0.00 0.00 0.00 3.91
162 2372 1.552337 GAGGTGAAGAGTGAGATGCCA 59.448 52.381 0.00 0.00 0.00 4.92
166 2376 3.341823 GTGAAGAGTGAGATGCCATGTT 58.658 45.455 0.00 0.00 0.00 2.71
169 2379 1.003928 AGAGTGAGATGCCATGTTGCA 59.996 47.619 0.00 0.00 46.94 4.08
170 2380 1.131883 GAGTGAGATGCCATGTTGCAC 59.868 52.381 0.00 0.00 45.48 4.57
172 2382 1.475280 GTGAGATGCCATGTTGCACAT 59.525 47.619 0.00 0.00 45.48 3.21
219 2429 2.361757 CGATAAGGCATTGATTTGGGCA 59.638 45.455 0.00 0.00 0.00 5.36
228 2438 5.346522 GCATTGATTTGGGCAAAACAAAAA 58.653 33.333 0.00 0.00 43.11 1.94
229 2439 5.984323 GCATTGATTTGGGCAAAACAAAAAT 59.016 32.000 0.00 0.00 43.11 1.82
254 2464 3.675348 CCATATATGGGGCATGGACAT 57.325 47.619 22.31 0.00 44.31 3.06
305 2515 3.637911 ATACGACATTTTAGGTGGCCA 57.362 42.857 0.00 0.00 0.00 5.36
313 2523 6.262273 CGACATTTTAGGTGGCCATATTAAGT 59.738 38.462 9.72 1.06 0.00 2.24
324 2534 6.998673 GTGGCCATATTAAGTGAACCTCTTAT 59.001 38.462 9.72 0.00 0.00 1.73
330 2540 3.611766 AAGTGAACCTCTTATGTCCCG 57.388 47.619 0.00 0.00 0.00 5.14
353 2563 4.752146 CTCTATTCATAGCATGCATCCGA 58.248 43.478 21.98 7.75 0.00 4.55
359 2569 0.104855 TAGCATGCATCCGAGACACC 59.895 55.000 21.98 0.00 0.00 4.16
363 2573 2.019249 CATGCATCCGAGACACCAAAT 58.981 47.619 0.00 0.00 0.00 2.32
369 2579 3.201353 TCCGAGACACCAAATTTCACA 57.799 42.857 0.00 0.00 0.00 3.58
407 2617 8.892723 ACATGAATGTGTTGTATATGTAGGTTG 58.107 33.333 0.00 0.00 40.03 3.77
408 2618 8.892723 CATGAATGTGTTGTATATGTAGGTTGT 58.107 33.333 0.00 0.00 0.00 3.32
419 2629 8.755028 TGTATATGTAGGTTGTATGTGTGTCTT 58.245 33.333 0.00 0.00 0.00 3.01
421 2631 5.538849 TGTAGGTTGTATGTGTGTCTTGA 57.461 39.130 0.00 0.00 0.00 3.02
443 2653 8.634475 TTGATTGTGATCACTTTACTATCTCG 57.366 34.615 25.55 0.00 41.84 4.04
444 2654 7.772166 TGATTGTGATCACTTTACTATCTCGT 58.228 34.615 25.55 0.00 37.37 4.18
462 2672 6.912203 TCTCGTGACAAAGAAACATTGTAA 57.088 33.333 0.00 0.00 40.90 2.41
464 2674 7.184106 TCTCGTGACAAAGAAACATTGTAAAC 58.816 34.615 0.00 0.00 40.90 2.01
485 2695 4.119862 ACTATCATACGCCATTGTGTCAC 58.880 43.478 0.00 0.00 36.42 3.67
496 2706 3.554129 CCATTGTGTCACGAACCTAGTGA 60.554 47.826 0.00 0.00 45.23 3.41
509 2719 3.550437 CCTAGTGAAGGTCTTCCCATG 57.450 52.381 8.09 0.00 40.94 3.66
516 2726 0.982852 AGGTCTTCCCATGATCCGCA 60.983 55.000 0.00 0.00 34.66 5.69
517 2727 0.815615 GGTCTTCCCATGATCCGCAC 60.816 60.000 0.00 0.00 0.00 5.34
520 2730 1.153449 TTCCCATGATCCGCACGAC 60.153 57.895 0.00 0.00 0.00 4.34
525 2735 0.458370 CATGATCCGCACGACACTCA 60.458 55.000 0.00 0.00 0.00 3.41
542 2752 3.077359 ACTCATTGTTGTAGCTTGAGGC 58.923 45.455 12.64 0.00 38.46 4.70
559 2769 6.963805 GCTTGAGGCGATTCAAAATATATAGC 59.036 38.462 4.03 0.00 36.69 2.97
560 2770 7.361201 GCTTGAGGCGATTCAAAATATATAGCA 60.361 37.037 4.03 0.00 36.69 3.49
587 3288 4.617530 GCAAGAAATTACCCGGGAAACTTC 60.618 45.833 32.02 22.40 0.00 3.01
629 3330 2.092699 GCTAGAAGAGGAAGCCATGGTT 60.093 50.000 14.67 3.81 0.00 3.67
645 3350 2.509569 TGGTTGCCGATAAGCTTTGAA 58.490 42.857 3.20 0.00 0.00 2.69
834 3543 2.883572 CGGAGCCGGCCTATATACT 58.116 57.895 26.15 0.00 35.56 2.12
839 3548 1.335882 GCCGGCCTATATACTCCCCC 61.336 65.000 18.11 0.00 0.00 5.40
1015 3731 1.447140 GCGATGTCCGTTGTGGCTA 60.447 57.895 0.00 0.00 41.15 3.93
1016 3732 1.693083 GCGATGTCCGTTGTGGCTAC 61.693 60.000 0.00 0.00 41.15 3.58
1017 3733 1.082117 CGATGTCCGTTGTGGCTACC 61.082 60.000 0.00 0.00 37.80 3.18
1139 3873 1.230819 AGGAGGAGGAGGAGGAGGT 60.231 63.158 0.00 0.00 0.00 3.85
1221 3958 0.614979 CGGTGGAGGAAGAGGAGGAA 60.615 60.000 0.00 0.00 0.00 3.36
1231 3980 2.689034 AGGAGGAAAGGGAGGCCG 60.689 66.667 0.00 0.00 0.00 6.13
1232 3981 2.687566 GGAGGAAAGGGAGGCCGA 60.688 66.667 0.00 0.00 0.00 5.54
1233 3982 2.736826 GGAGGAAAGGGAGGCCGAG 61.737 68.421 0.00 0.00 0.00 4.63
1234 3983 2.689034 AGGAAAGGGAGGCCGAGG 60.689 66.667 0.00 0.00 0.00 4.63
1235 3984 4.491409 GGAAAGGGAGGCCGAGGC 62.491 72.222 5.37 5.37 41.06 4.70
1236 3985 3.403558 GAAAGGGAGGCCGAGGCT 61.404 66.667 14.33 0.02 42.48 4.58
1237 3986 3.689002 GAAAGGGAGGCCGAGGCTG 62.689 68.421 14.33 0.00 38.98 4.85
1419 4168 5.422012 CCCCATCAAGTAATTAACCAGCTTT 59.578 40.000 0.00 0.00 0.00 3.51
1466 4218 6.212589 CCCATTAACAACCCTACCAATTCTTT 59.787 38.462 0.00 0.00 0.00 2.52
1467 4219 7.320399 CCATTAACAACCCTACCAATTCTTTC 58.680 38.462 0.00 0.00 0.00 2.62
1468 4220 7.178451 CCATTAACAACCCTACCAATTCTTTCT 59.822 37.037 0.00 0.00 0.00 2.52
1469 4221 8.585018 CATTAACAACCCTACCAATTCTTTCTT 58.415 33.333 0.00 0.00 0.00 2.52
1816 4572 1.681166 GGCAGTGGCTGATCATCAACT 60.681 52.381 9.90 0.49 40.87 3.16
1847 4606 1.444724 CCGTACGTGCACCGATCAA 60.445 57.895 15.21 0.00 40.70 2.57
1850 4609 1.392168 CGTACGTGCACCGATCAAATT 59.608 47.619 12.15 0.00 40.70 1.82
1851 4610 2.769376 GTACGTGCACCGATCAAATTG 58.231 47.619 12.15 0.00 40.70 2.32
1852 4611 1.518325 ACGTGCACCGATCAAATTGA 58.482 45.000 12.15 0.00 40.70 2.57
1853 4612 2.083774 ACGTGCACCGATCAAATTGAT 58.916 42.857 12.15 8.39 40.34 2.57
1930 4698 5.337410 GGAAACAAACTACTAGGGAGGAGAC 60.337 48.000 0.00 0.00 35.30 3.36
1931 4699 4.399483 ACAAACTACTAGGGAGGAGACA 57.601 45.455 0.00 0.00 35.30 3.41
1932 4700 4.748701 ACAAACTACTAGGGAGGAGACAA 58.251 43.478 0.00 0.00 35.30 3.18
1933 4701 4.773149 ACAAACTACTAGGGAGGAGACAAG 59.227 45.833 0.00 0.00 35.30 3.16
1934 4702 4.949966 AACTACTAGGGAGGAGACAAGA 57.050 45.455 0.00 0.00 35.30 3.02
1935 4703 5.475398 AACTACTAGGGAGGAGACAAGAT 57.525 43.478 0.00 0.00 35.30 2.40
1936 4704 4.798882 ACTACTAGGGAGGAGACAAGATG 58.201 47.826 0.00 0.00 35.30 2.90
1937 4705 3.039252 ACTAGGGAGGAGACAAGATGG 57.961 52.381 0.00 0.00 0.00 3.51
1938 4706 2.587777 ACTAGGGAGGAGACAAGATGGA 59.412 50.000 0.00 0.00 0.00 3.41
1939 4707 2.885388 AGGGAGGAGACAAGATGGAT 57.115 50.000 0.00 0.00 0.00 3.41
1940 4708 2.406559 AGGGAGGAGACAAGATGGATG 58.593 52.381 0.00 0.00 0.00 3.51
1980 4748 3.978610 ACTTTGTAGTACTCCGGGATCT 58.021 45.455 0.00 0.00 31.21 2.75
1989 4757 1.216678 ACTCCGGGATCTCACTCATCT 59.783 52.381 0.00 0.00 0.00 2.90
2013 4781 2.035469 ACATCACCAATGGCCGCA 59.965 55.556 0.00 0.00 39.90 5.69
2243 5015 2.557920 AAGAGCCCCGATTGATCATC 57.442 50.000 0.00 0.00 0.00 2.92
2282 5054 7.883391 AAGTCGATCTCTAGGATGTTTCTTA 57.117 36.000 0.00 0.00 34.33 2.10
2344 5120 3.570926 TGAGAGTACTAACAGTTGCCG 57.429 47.619 0.00 0.00 0.00 5.69
2365 5141 4.021456 CCGAGCACCATATATACTTGACCA 60.021 45.833 0.00 0.00 0.00 4.02
2417 5197 8.240682 TGGTGCTATTGTACATAATTTGTGTTC 58.759 33.333 4.03 0.43 39.48 3.18
2446 5227 7.506328 AAATACTATATCGGCAAAAGGGTTC 57.494 36.000 0.00 0.00 0.00 3.62
2447 5228 4.497291 ACTATATCGGCAAAAGGGTTCA 57.503 40.909 0.00 0.00 0.00 3.18
2459 5240 4.771114 AAAGGGTTCATCGTGATCCATA 57.229 40.909 13.52 0.00 37.85 2.74
2504 5608 7.759886 GCCTCTTTGATTTGTAGGATTTAAACC 59.240 37.037 0.00 0.00 0.00 3.27
2505 5609 7.968405 CCTCTTTGATTTGTAGGATTTAAACCG 59.032 37.037 0.00 0.00 0.00 4.44
2514 5618 8.795842 TTGTAGGATTTAAACCGTACATGAAT 57.204 30.769 14.32 0.00 0.00 2.57
2515 5619 9.887629 TTGTAGGATTTAAACCGTACATGAATA 57.112 29.630 14.32 0.00 0.00 1.75
2516 5620 9.537192 TGTAGGATTTAAACCGTACATGAATAG 57.463 33.333 10.42 0.00 0.00 1.73
2555 5747 2.542178 CGAAATATCACGCCCATTCGAA 59.458 45.455 0.00 0.00 41.39 3.71
2574 5766 7.715265 TTCGAAGTCTATATGATTTGGCTTC 57.285 36.000 0.00 0.00 0.00 3.86
2586 5778 5.916318 TGATTTGGCTTCTTGTTTGATTGT 58.084 33.333 0.00 0.00 0.00 2.71
2601 5793 9.515020 TTGTTTGATTGTGTCATAGAAAAGAAC 57.485 29.630 0.00 0.00 36.54 3.01
2607 5799 6.480524 TGTGTCATAGAAAAGAACGGATTG 57.519 37.500 0.00 0.00 0.00 2.67
2625 5817 4.383661 GGATTGTTTTCAACTGGTTTGGGT 60.384 41.667 0.00 0.00 42.94 4.51
2650 5842 8.394121 GTGATCAGAGAAACCAGTATGAAAATC 58.606 37.037 0.00 0.00 39.69 2.17
2699 5897 8.562892 AGAATCAAGCAATTGAAATATACTCCG 58.437 33.333 10.34 0.00 34.24 4.63
2700 5898 8.450578 AATCAAGCAATTGAAATATACTCCGA 57.549 30.769 10.34 0.00 34.24 4.55
2701 5899 7.857734 TCAAGCAATTGAAATATACTCCGAA 57.142 32.000 10.34 0.00 0.00 4.30
2702 5900 8.275015 TCAAGCAATTGAAATATACTCCGAAA 57.725 30.769 10.34 0.00 0.00 3.46
2703 5901 8.735315 TCAAGCAATTGAAATATACTCCGAAAA 58.265 29.630 10.34 0.00 0.00 2.29
2704 5902 9.520204 CAAGCAATTGAAATATACTCCGAAAAT 57.480 29.630 10.34 0.00 0.00 1.82
2711 5909 9.632807 TTGAAATATACTCCGAAAATTTTGTGG 57.367 29.630 8.47 10.05 0.00 4.17
2712 5910 9.015367 TGAAATATACTCCGAAAATTTTGTGGA 57.985 29.630 8.47 13.67 0.00 4.02
2734 5932 0.249741 ACTATATCGTTGGGCCGTGC 60.250 55.000 0.00 0.00 0.00 5.34
2738 5936 2.457743 TATCGTTGGGCCGTGCACTT 62.458 55.000 16.19 0.00 30.56 3.16
2739 5937 4.025401 CGTTGGGCCGTGCACTTC 62.025 66.667 16.19 5.96 30.56 3.01
2746 5944 3.411351 CCGTGCACTTCGGTTCGG 61.411 66.667 16.19 4.33 42.62 4.30
2747 5945 2.660552 CGTGCACTTCGGTTCGGT 60.661 61.111 16.19 0.00 0.00 4.69
2748 5946 2.241880 CGTGCACTTCGGTTCGGTT 61.242 57.895 16.19 0.00 0.00 4.44
2749 5947 1.278637 GTGCACTTCGGTTCGGTTG 59.721 57.895 10.32 0.00 0.00 3.77
2750 5948 1.890041 TGCACTTCGGTTCGGTTGG 60.890 57.895 0.00 0.00 0.00 3.77
2751 5949 1.890510 GCACTTCGGTTCGGTTGGT 60.891 57.895 0.00 0.00 0.00 3.67
2752 5950 1.441732 GCACTTCGGTTCGGTTGGTT 61.442 55.000 0.00 0.00 0.00 3.67
2753 5951 1.018910 CACTTCGGTTCGGTTGGTTT 58.981 50.000 0.00 0.00 0.00 3.27
2754 5952 1.018910 ACTTCGGTTCGGTTGGTTTG 58.981 50.000 0.00 0.00 0.00 2.93
2760 5958 2.159352 CGGTTCGGTTGGTTTGTTCTTT 60.159 45.455 0.00 0.00 0.00 2.52
2763 5961 4.979815 GGTTCGGTTGGTTTGTTCTTTATG 59.020 41.667 0.00 0.00 0.00 1.90
2767 5965 5.050227 TCGGTTGGTTTGTTCTTTATGTACG 60.050 40.000 0.00 0.00 0.00 3.67
2772 5970 5.077424 GGTTTGTTCTTTATGTACGAAGCG 58.923 41.667 0.00 0.00 31.55 4.68
2851 6049 4.871513 TGAATCAGAGATACCGTATGTGC 58.128 43.478 0.00 0.00 0.00 4.57
2871 6069 2.571216 CGACCAGGGGACGTCAAGT 61.571 63.158 18.91 6.39 36.27 3.16
2908 6106 1.808945 CTTCACCATCCAAGCACAGAC 59.191 52.381 0.00 0.00 0.00 3.51
2909 6107 0.320683 TCACCATCCAAGCACAGACG 60.321 55.000 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 2269 8.004215 ACAATATAAATTGGCATTGAGTAGGGA 58.996 33.333 11.18 0.00 45.72 4.20
78 2288 6.057533 CAGGTGATCTCTTGCCAACAATATA 58.942 40.000 0.00 0.00 34.61 0.86
80 2290 4.264253 CAGGTGATCTCTTGCCAACAATA 58.736 43.478 0.00 0.00 34.61 1.90
83 2293 1.271543 CCAGGTGATCTCTTGCCAACA 60.272 52.381 1.59 0.00 0.00 3.33
94 2304 3.889815 TCCATCATGTTTCCAGGTGATC 58.110 45.455 0.00 0.00 0.00 2.92
95 2305 4.264083 ACTTCCATCATGTTTCCAGGTGAT 60.264 41.667 0.00 0.00 0.00 3.06
96 2306 3.074390 ACTTCCATCATGTTTCCAGGTGA 59.926 43.478 0.00 0.00 0.00 4.02
97 2307 3.192001 CACTTCCATCATGTTTCCAGGTG 59.808 47.826 0.00 0.00 0.00 4.00
98 2308 3.424703 CACTTCCATCATGTTTCCAGGT 58.575 45.455 0.00 0.00 0.00 4.00
99 2309 2.165030 GCACTTCCATCATGTTTCCAGG 59.835 50.000 0.00 0.00 0.00 4.45
100 2310 2.159476 CGCACTTCCATCATGTTTCCAG 60.159 50.000 0.00 0.00 0.00 3.86
101 2311 1.811965 CGCACTTCCATCATGTTTCCA 59.188 47.619 0.00 0.00 0.00 3.53
102 2312 1.133025 CCGCACTTCCATCATGTTTCC 59.867 52.381 0.00 0.00 0.00 3.13
103 2313 2.083774 TCCGCACTTCCATCATGTTTC 58.916 47.619 0.00 0.00 0.00 2.78
104 2314 2.086869 CTCCGCACTTCCATCATGTTT 58.913 47.619 0.00 0.00 0.00 2.83
105 2315 1.679944 CCTCCGCACTTCCATCATGTT 60.680 52.381 0.00 0.00 0.00 2.71
106 2316 0.107508 CCTCCGCACTTCCATCATGT 60.108 55.000 0.00 0.00 0.00 3.21
107 2317 0.816825 CCCTCCGCACTTCCATCATG 60.817 60.000 0.00 0.00 0.00 3.07
108 2318 0.982852 TCCCTCCGCACTTCCATCAT 60.983 55.000 0.00 0.00 0.00 2.45
112 2322 3.691342 CGTCCCTCCGCACTTCCA 61.691 66.667 0.00 0.00 0.00 3.53
126 2336 0.390472 CCTCTTCTCCTTGCCACGTC 60.390 60.000 0.00 0.00 0.00 4.34
129 2339 0.687354 TCACCTCTTCTCCTTGCCAC 59.313 55.000 0.00 0.00 0.00 5.01
136 2346 3.426615 TCTCACTCTTCACCTCTTCTCC 58.573 50.000 0.00 0.00 0.00 3.71
138 2348 3.195396 GCATCTCACTCTTCACCTCTTCT 59.805 47.826 0.00 0.00 0.00 2.85
145 2355 2.983229 ACATGGCATCTCACTCTTCAC 58.017 47.619 0.00 0.00 0.00 3.18
153 2363 3.342982 TGTGCAACATGGCATCTCA 57.657 47.368 0.00 0.00 45.67 3.27
176 2386 3.490348 GCAACCATGCTTCTATGGGTAT 58.510 45.455 9.37 0.00 46.27 2.73
219 2429 5.461737 CCATATATGGCGCGATTTTTGTTTT 59.538 36.000 18.77 0.00 41.75 2.43
228 2438 1.153168 GCCCCATATATGGCGCGAT 60.153 57.895 24.27 10.52 46.70 4.58
229 2439 2.267642 GCCCCATATATGGCGCGA 59.732 61.111 24.27 0.00 46.70 5.87
251 2461 4.619160 GCTTTAGCTTAGCCTTTTGCATGT 60.619 41.667 0.00 0.00 39.46 3.21
254 2464 2.890311 TGCTTTAGCTTAGCCTTTTGCA 59.110 40.909 15.46 3.04 41.92 4.08
305 2515 7.442656 CGGGACATAAGAGGTTCACTTAATAT 58.557 38.462 0.00 0.00 34.28 1.28
313 2523 1.480954 GAGCGGGACATAAGAGGTTCA 59.519 52.381 0.00 0.00 0.00 3.18
324 2534 2.316108 TGCTATGAATAGAGCGGGACA 58.684 47.619 1.40 0.00 43.98 4.02
330 2540 3.309138 CGGATGCATGCTATGAATAGAGC 59.691 47.826 20.33 0.00 41.47 4.09
353 2563 4.949856 ACAGACTTGTGAAATTTGGTGTCT 59.050 37.500 0.00 0.00 35.83 3.41
369 2579 3.817084 CACATTCATGTCACCACAGACTT 59.183 43.478 0.00 0.00 39.39 3.01
407 2617 6.369890 AGTGATCACAATCAAGACACACATAC 59.630 38.462 27.02 0.00 43.42 2.39
408 2618 6.466812 AGTGATCACAATCAAGACACACATA 58.533 36.000 27.02 0.00 43.42 2.29
419 2629 7.702348 CACGAGATAGTAAAGTGATCACAATCA 59.298 37.037 27.02 6.96 39.63 2.57
421 2631 7.702772 GTCACGAGATAGTAAAGTGATCACAAT 59.297 37.037 27.02 17.04 42.68 2.71
443 2653 9.944663 TGATAGTTTACAATGTTTCTTTGTCAC 57.055 29.630 0.00 4.45 38.26 3.67
462 2672 4.570772 GTGACACAATGGCGTATGATAGTT 59.429 41.667 0.00 0.00 0.00 2.24
464 2674 3.182372 CGTGACACAATGGCGTATGATAG 59.818 47.826 6.37 0.00 0.00 2.08
470 2680 1.141645 GTTCGTGACACAATGGCGTA 58.858 50.000 6.37 0.00 0.00 4.42
496 2706 0.181350 GCGGATCATGGGAAGACCTT 59.819 55.000 0.00 0.00 41.11 3.50
497 2707 0.982852 TGCGGATCATGGGAAGACCT 60.983 55.000 0.00 0.00 41.11 3.85
499 2709 1.154205 CGTGCGGATCATGGGAAGAC 61.154 60.000 0.00 0.00 0.00 3.01
509 2719 0.647410 CAATGAGTGTCGTGCGGATC 59.353 55.000 0.00 0.00 0.00 3.36
516 2726 3.386768 AGCTACAACAATGAGTGTCGT 57.613 42.857 0.00 0.00 40.60 4.34
517 2727 3.740832 TCAAGCTACAACAATGAGTGTCG 59.259 43.478 0.00 0.00 40.60 4.35
520 2730 3.120060 GCCTCAAGCTACAACAATGAGTG 60.120 47.826 8.18 2.44 36.61 3.51
525 2735 2.472695 TCGCCTCAAGCTACAACAAT 57.527 45.000 0.00 0.00 40.39 2.71
542 2752 8.969121 TTGCCAATGCTATATATTTTGAATCG 57.031 30.769 0.00 0.00 38.71 3.34
551 2761 8.971073 GGGTAATTTCTTGCCAATGCTATATAT 58.029 33.333 0.00 0.00 38.77 0.86
553 2763 6.071952 CGGGTAATTTCTTGCCAATGCTATAT 60.072 38.462 0.00 0.00 38.77 0.86
554 2764 5.240623 CGGGTAATTTCTTGCCAATGCTATA 59.759 40.000 0.00 0.00 38.77 1.31
555 2765 4.037923 CGGGTAATTTCTTGCCAATGCTAT 59.962 41.667 0.00 0.00 38.77 2.97
556 2766 3.380004 CGGGTAATTTCTTGCCAATGCTA 59.620 43.478 0.00 0.00 38.77 3.49
557 2767 2.166254 CGGGTAATTTCTTGCCAATGCT 59.834 45.455 0.00 0.00 38.77 3.79
558 2768 2.539476 CGGGTAATTTCTTGCCAATGC 58.461 47.619 0.00 0.00 38.77 3.56
559 2769 2.159114 CCCGGGTAATTTCTTGCCAATG 60.159 50.000 14.18 0.00 38.77 2.82
560 2770 2.107366 CCCGGGTAATTTCTTGCCAAT 58.893 47.619 14.18 0.00 38.77 3.16
587 3288 2.157668 CACTTTCCGTCTCATTTCCGTG 59.842 50.000 0.00 0.00 0.00 4.94
629 3330 2.878406 GCCTATTCAAAGCTTATCGGCA 59.122 45.455 15.07 0.00 32.19 5.69
645 3350 1.668628 CGCGCCTTTTGTTTTGCCTAT 60.669 47.619 0.00 0.00 0.00 2.57
816 3525 0.739561 GAGTATATAGGCCGGCTCCG 59.260 60.000 28.56 0.48 39.44 4.63
817 3526 1.112950 GGAGTATATAGGCCGGCTCC 58.887 60.000 28.56 18.83 36.21 4.70
818 3527 1.112950 GGGAGTATATAGGCCGGCTC 58.887 60.000 28.56 16.85 0.00 4.70
820 3529 1.335882 GGGGGAGTATATAGGCCGGC 61.336 65.000 21.18 21.18 0.00 6.13
821 3530 1.041447 CGGGGGAGTATATAGGCCGG 61.041 65.000 0.00 0.00 0.00 6.13
824 3533 1.814527 CGCGGGGGAGTATATAGGC 59.185 63.158 0.00 0.00 0.00 3.93
825 3534 1.673808 GGCGCGGGGGAGTATATAGG 61.674 65.000 8.83 0.00 0.00 2.57
826 3535 1.814527 GGCGCGGGGGAGTATATAG 59.185 63.158 8.83 0.00 0.00 1.31
827 3536 2.048023 CGGCGCGGGGGAGTATATA 61.048 63.158 8.83 0.00 0.00 0.86
828 3537 3.379445 CGGCGCGGGGGAGTATAT 61.379 66.667 8.83 0.00 0.00 0.86
851 3560 1.410932 CGGAGGACAGAAGGAGAGGAT 60.411 57.143 0.00 0.00 0.00 3.24
1242 3991 3.838795 CGCTCGTTTTCCGCCTCG 61.839 66.667 0.00 0.00 36.19 4.63
1419 4168 4.240323 GGATGATTAAGGGAAGGGAGGTA 58.760 47.826 0.00 0.00 0.00 3.08
1466 4218 1.196808 GAATTCGCCGTTCTTGCAAGA 59.803 47.619 25.16 25.16 0.00 3.02
1467 4219 1.197721 AGAATTCGCCGTTCTTGCAAG 59.802 47.619 20.81 20.81 32.17 4.01
1468 4220 1.196808 GAGAATTCGCCGTTCTTGCAA 59.803 47.619 0.00 0.00 36.13 4.08
1469 4221 0.796312 GAGAATTCGCCGTTCTTGCA 59.204 50.000 0.00 0.00 36.13 4.08
1816 4572 2.043752 TACGGCGTCCCTGGATCA 60.044 61.111 19.21 0.00 0.00 2.92
1847 4606 7.601508 GCATGTCTTTTCTCTTTTGGATCAATT 59.398 33.333 0.00 0.00 0.00 2.32
1850 4609 5.535783 TGCATGTCTTTTCTCTTTTGGATCA 59.464 36.000 0.00 0.00 0.00 2.92
1851 4610 6.017400 TGCATGTCTTTTCTCTTTTGGATC 57.983 37.500 0.00 0.00 0.00 3.36
1852 4611 6.600882 ATGCATGTCTTTTCTCTTTTGGAT 57.399 33.333 0.00 0.00 0.00 3.41
1853 4612 7.541162 CATATGCATGTCTTTTCTCTTTTGGA 58.459 34.615 10.16 0.00 0.00 3.53
1854 4613 6.255020 GCATATGCATGTCTTTTCTCTTTTGG 59.745 38.462 22.84 0.00 41.59 3.28
1855 4614 7.218145 GCATATGCATGTCTTTTCTCTTTTG 57.782 36.000 22.84 0.00 41.59 2.44
1930 4698 3.801307 TCCATCCATCCATCCATCTTG 57.199 47.619 0.00 0.00 0.00 3.02
1931 4699 3.011369 CCATCCATCCATCCATCCATCTT 59.989 47.826 0.00 0.00 0.00 2.40
1932 4700 2.581246 CCATCCATCCATCCATCCATCT 59.419 50.000 0.00 0.00 0.00 2.90
1933 4701 2.579400 TCCATCCATCCATCCATCCATC 59.421 50.000 0.00 0.00 0.00 3.51
1934 4702 2.651190 TCCATCCATCCATCCATCCAT 58.349 47.619 0.00 0.00 0.00 3.41
1935 4703 2.136974 TCCATCCATCCATCCATCCA 57.863 50.000 0.00 0.00 0.00 3.41
1936 4704 2.091994 GGATCCATCCATCCATCCATCC 60.092 54.545 6.95 0.00 46.38 3.51
1937 4705 3.294038 GGATCCATCCATCCATCCATC 57.706 52.381 6.95 0.00 46.38 3.51
1980 4748 3.094572 TGATGTGAGCTGAGATGAGTGA 58.905 45.455 0.00 0.00 0.00 3.41
1989 4757 1.951895 GCCATTGGTGATGTGAGCTGA 60.952 52.381 4.26 0.00 33.71 4.26
2243 5015 3.561503 TCGACTTAGAACACACATGTCG 58.438 45.455 0.00 0.00 44.48 4.35
2344 5120 8.700051 AGATATGGTCAAGTATATATGGTGCTC 58.300 37.037 0.00 0.00 0.00 4.26
2365 5141 7.125811 ACTTCACCAACCATAGTACACAGATAT 59.874 37.037 0.00 0.00 0.00 1.63
2417 5197 8.076178 CCCTTTTGCCGATATAGTATTTTTCAG 58.924 37.037 0.00 0.00 0.00 3.02
2473 5254 4.080526 TCCTACAAATCAAAGAGGCCCTAC 60.081 45.833 0.00 0.00 0.00 3.18
2534 5726 2.131972 TCGAATGGGCGTGATATTTCG 58.868 47.619 0.00 0.00 0.00 3.46
2555 5747 8.680903 CAAACAAGAAGCCAAATCATATAGACT 58.319 33.333 0.00 0.00 0.00 3.24
2574 5766 9.734620 TTCTTTTCTATGACACAATCAAACAAG 57.265 29.630 0.00 0.00 41.93 3.16
2586 5778 7.504924 AAACAATCCGTTCTTTTCTATGACA 57.495 32.000 0.00 0.00 36.59 3.58
2625 5817 8.324306 AGATTTTCATACTGGTTTCTCTGATCA 58.676 33.333 0.00 0.00 0.00 2.92
2685 5881 9.632807 CCACAAAATTTTCGGAGTATATTTCAA 57.367 29.630 9.44 0.00 0.00 2.69
2696 5894 9.321562 GATATAGTACTCCACAAAATTTTCGGA 57.678 33.333 14.88 14.88 0.00 4.55
2697 5895 8.273557 CGATATAGTACTCCACAAAATTTTCGG 58.726 37.037 0.00 5.07 0.00 4.30
2698 5896 8.814235 ACGATATAGTACTCCACAAAATTTTCG 58.186 33.333 0.00 1.51 0.00 3.46
2701 5899 8.889717 CCAACGATATAGTACTCCACAAAATTT 58.110 33.333 0.00 0.00 0.00 1.82
2702 5900 7.497909 CCCAACGATATAGTACTCCACAAAATT 59.502 37.037 0.00 0.00 0.00 1.82
2703 5901 6.990349 CCCAACGATATAGTACTCCACAAAAT 59.010 38.462 0.00 0.00 0.00 1.82
2704 5902 6.342906 CCCAACGATATAGTACTCCACAAAA 58.657 40.000 0.00 0.00 0.00 2.44
2705 5903 5.682990 GCCCAACGATATAGTACTCCACAAA 60.683 44.000 0.00 0.00 0.00 2.83
2706 5904 4.202182 GCCCAACGATATAGTACTCCACAA 60.202 45.833 0.00 0.00 0.00 3.33
2707 5905 3.319972 GCCCAACGATATAGTACTCCACA 59.680 47.826 0.00 0.00 0.00 4.17
2708 5906 3.305881 GGCCCAACGATATAGTACTCCAC 60.306 52.174 0.00 0.00 0.00 4.02
2709 5907 2.895404 GGCCCAACGATATAGTACTCCA 59.105 50.000 0.00 0.00 0.00 3.86
2710 5908 2.094854 CGGCCCAACGATATAGTACTCC 60.095 54.545 0.00 0.00 35.47 3.85
2711 5909 2.555757 ACGGCCCAACGATATAGTACTC 59.444 50.000 0.00 0.00 37.61 2.59
2712 5910 2.295349 CACGGCCCAACGATATAGTACT 59.705 50.000 0.00 0.00 37.61 2.73
2713 5911 2.669364 CACGGCCCAACGATATAGTAC 58.331 52.381 0.00 0.00 37.61 2.73
2714 5912 1.000060 GCACGGCCCAACGATATAGTA 60.000 52.381 0.00 0.00 37.61 1.82
2715 5913 0.249741 GCACGGCCCAACGATATAGT 60.250 55.000 0.00 0.00 37.61 2.12
2716 5914 0.249699 TGCACGGCCCAACGATATAG 60.250 55.000 0.00 0.00 37.61 1.31
2734 5932 1.018910 AAACCAACCGAACCGAAGTG 58.981 50.000 0.00 0.00 0.00 3.16
2738 5936 1.015868 GAACAAACCAACCGAACCGA 58.984 50.000 0.00 0.00 0.00 4.69
2739 5937 1.018910 AGAACAAACCAACCGAACCG 58.981 50.000 0.00 0.00 0.00 4.44
2746 5944 6.358822 GCTTCGTACATAAAGAACAAACCAAC 59.641 38.462 0.00 0.00 0.00 3.77
2747 5945 6.432107 GCTTCGTACATAAAGAACAAACCAA 58.568 36.000 0.00 0.00 0.00 3.67
2748 5946 5.333492 CGCTTCGTACATAAAGAACAAACCA 60.333 40.000 0.00 0.00 0.00 3.67
2749 5947 5.077424 CGCTTCGTACATAAAGAACAAACC 58.923 41.667 0.00 0.00 0.00 3.27
2750 5948 5.077424 CCGCTTCGTACATAAAGAACAAAC 58.923 41.667 0.00 0.00 0.00 2.93
2751 5949 4.152759 CCCGCTTCGTACATAAAGAACAAA 59.847 41.667 0.00 0.00 0.00 2.83
2752 5950 3.680937 CCCGCTTCGTACATAAAGAACAA 59.319 43.478 0.00 0.00 0.00 2.83
2753 5951 3.255725 CCCGCTTCGTACATAAAGAACA 58.744 45.455 0.00 0.00 0.00 3.18
2754 5952 2.606272 CCCCGCTTCGTACATAAAGAAC 59.394 50.000 0.00 0.00 0.00 3.01
2760 5958 2.067091 CTCGCCCCGCTTCGTACATA 62.067 60.000 0.00 0.00 0.00 2.29
2763 5961 3.753070 CTCTCGCCCCGCTTCGTAC 62.753 68.421 0.00 0.00 0.00 3.67
2772 5970 0.107459 AGAATTTCTGCTCTCGCCCC 60.107 55.000 0.00 0.00 34.43 5.80
2794 5992 1.048601 TTTTCGGAGCACTGAGACCT 58.951 50.000 0.00 0.00 32.64 3.85
2796 5994 3.330267 AGAATTTTCGGAGCACTGAGAC 58.670 45.455 0.00 0.00 32.64 3.36
2851 6049 2.214181 CTTGACGTCCCCTGGTCGAG 62.214 65.000 14.12 0.00 37.64 4.04
2871 6069 1.352622 AAGGCCTGAAGTGACCACCA 61.353 55.000 5.69 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.