Multiple sequence alignment - TraesCS7B01G324800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G324800 chr7B 100.000 2722 0 0 1 2722 577303195 577300474 0.000000e+00 5027.0
1 TraesCS7B01G324800 chr7B 87.000 500 55 8 2162 2661 333744333 333744822 3.060000e-154 555.0
2 TraesCS7B01G324800 chr7A 87.568 1649 108 41 513 2138 618116509 618118083 0.000000e+00 1820.0
3 TraesCS7B01G324800 chr7A 86.796 515 60 6 2149 2661 138662173 138662681 3.930000e-158 568.0
4 TraesCS7B01G324800 chr7A 81.301 246 41 4 2235 2478 250804987 250805229 7.690000e-46 195.0
5 TraesCS7B01G324800 chr7D 92.464 1181 72 11 973 2144 535563917 535562745 0.000000e+00 1672.0
6 TraesCS7B01G324800 chr7D 92.494 413 21 4 504 914 535564320 535563916 1.400000e-162 582.0
7 TraesCS7B01G324800 chr7D 81.928 249 43 2 2230 2478 104215509 104215755 2.750000e-50 209.0
8 TraesCS7B01G324800 chr7D 92.079 101 8 0 117 217 600463122 600463022 2.830000e-30 143.0
9 TraesCS7B01G324800 chr1B 98.803 585 7 0 2138 2722 557395743 557396327 0.000000e+00 1042.0
10 TraesCS7B01G324800 chr1B 87.069 348 27 8 2314 2661 132928561 132928890 7.110000e-101 377.0
11 TraesCS7B01G324800 chr1B 90.361 166 15 1 273 437 186803625 186803460 1.640000e-52 217.0
12 TraesCS7B01G324800 chr4D 88.871 620 62 6 1114 1730 354036794 354037409 0.000000e+00 756.0
13 TraesCS7B01G324800 chr4D 87.640 178 19 3 273 449 32504051 32504226 1.280000e-48 204.0
14 TraesCS7B01G324800 chr4A 88.762 614 63 5 1121 1730 110910203 110909592 0.000000e+00 747.0
15 TraesCS7B01G324800 chr4A 89.167 240 24 1 2422 2661 666479758 666479521 5.700000e-77 298.0
16 TraesCS7B01G324800 chr2D 89.094 596 65 0 1128 1723 323516937 323516342 0.000000e+00 741.0
17 TraesCS7B01G324800 chr2D 89.020 592 65 0 1128 1719 73819984 73819393 0.000000e+00 734.0
18 TraesCS7B01G324800 chr2D 87.234 188 20 2 273 460 12918869 12918686 7.640000e-51 211.0
19 TraesCS7B01G324800 chr2D 91.489 47 2 2 2133 2178 27633952 27633907 2.260000e-06 63.9
20 TraesCS7B01G324800 chr4B 88.926 596 66 0 1127 1722 437747896 437748491 0.000000e+00 736.0
21 TraesCS7B01G324800 chr4B 87.634 186 21 2 273 458 391542729 391542546 5.900000e-52 215.0
22 TraesCS7B01G324800 chr2B 88.468 607 69 1 1114 1719 111669307 111668701 0.000000e+00 732.0
23 TraesCS7B01G324800 chr2B 87.282 401 41 3 2261 2661 637450354 637450744 1.490000e-122 449.0
24 TraesCS7B01G324800 chr2B 85.000 460 44 7 2217 2661 615555430 615555879 6.920000e-121 444.0
25 TraesCS7B01G324800 chr2B 90.909 165 14 1 286 449 373994434 373994270 1.270000e-53 220.0
26 TraesCS7B01G324800 chr2B 82.517 143 20 5 2490 2632 547872604 547872467 1.320000e-23 121.0
27 TraesCS7B01G324800 chr2A 88.591 596 68 0 1128 1723 406997065 406997660 0.000000e+00 725.0
28 TraesCS7B01G324800 chr5A 85.920 348 30 11 2314 2661 437405518 437405190 1.200000e-93 353.0
29 TraesCS7B01G324800 chr6B 83.959 293 32 8 2140 2429 231671333 231671053 1.610000e-67 267.0
30 TraesCS7B01G324800 chr6B 92.079 101 8 0 117 217 115683055 115682955 2.830000e-30 143.0
31 TraesCS7B01G324800 chr5D 90.710 183 15 2 273 454 556557773 556557592 2.710000e-60 243.0
32 TraesCS7B01G324800 chr5D 86.339 183 23 2 273 454 339664675 339664856 5.950000e-47 198.0
33 TraesCS7B01G324800 chr1A 87.363 182 21 2 273 452 585632250 585632069 9.880000e-50 207.0
34 TraesCS7B01G324800 chr1A 87.027 185 18 4 273 453 548735856 548735674 1.280000e-48 204.0
35 TraesCS7B01G324800 chrUn 80.478 251 44 5 2230 2478 215726362 215726609 1.290000e-43 187.0
36 TraesCS7B01G324800 chr3B 92.079 101 8 0 117 217 206382847 206382747 2.830000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G324800 chr7B 577300474 577303195 2721 True 5027 5027 100.000 1 2722 1 chr7B.!!$R1 2721
1 TraesCS7B01G324800 chr7A 618116509 618118083 1574 False 1820 1820 87.568 513 2138 1 chr7A.!!$F3 1625
2 TraesCS7B01G324800 chr7A 138662173 138662681 508 False 568 568 86.796 2149 2661 1 chr7A.!!$F1 512
3 TraesCS7B01G324800 chr7D 535562745 535564320 1575 True 1127 1672 92.479 504 2144 2 chr7D.!!$R2 1640
4 TraesCS7B01G324800 chr1B 557395743 557396327 584 False 1042 1042 98.803 2138 2722 1 chr1B.!!$F2 584
5 TraesCS7B01G324800 chr4D 354036794 354037409 615 False 756 756 88.871 1114 1730 1 chr4D.!!$F2 616
6 TraesCS7B01G324800 chr4A 110909592 110910203 611 True 747 747 88.762 1121 1730 1 chr4A.!!$R1 609
7 TraesCS7B01G324800 chr2D 323516342 323516937 595 True 741 741 89.094 1128 1723 1 chr2D.!!$R4 595
8 TraesCS7B01G324800 chr2D 73819393 73819984 591 True 734 734 89.020 1128 1719 1 chr2D.!!$R3 591
9 TraesCS7B01G324800 chr4B 437747896 437748491 595 False 736 736 88.926 1127 1722 1 chr4B.!!$F1 595
10 TraesCS7B01G324800 chr2B 111668701 111669307 606 True 732 732 88.468 1114 1719 1 chr2B.!!$R1 605
11 TraesCS7B01G324800 chr2A 406997065 406997660 595 False 725 725 88.591 1128 1723 1 chr2A.!!$F1 595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
23 24 0.034337 GCCGTCTGGACACAGGTAAA 59.966 55.0 1.63 0.0 44.99 2.01 F
199 200 0.035820 GTACATTGGCAGGACCCGAA 60.036 55.0 0.00 0.0 37.83 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1125 1139 0.247576 CACGTCGAGTAGTACCTGCG 60.248 60.0 0.0 0.0 0.0 5.18 R
2054 2114 0.108329 CGCGGAGGACATTAACCAGT 60.108 55.0 0.0 0.0 0.0 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.544772 TCAAGCCGTCTGGACACA 58.455 55.556 1.63 0.00 37.49 3.72
18 19 1.367471 TCAAGCCGTCTGGACACAG 59.633 57.895 1.63 0.00 46.30 3.66
19 20 1.669115 CAAGCCGTCTGGACACAGG 60.669 63.158 1.63 0.00 44.99 4.00
20 21 2.140792 AAGCCGTCTGGACACAGGT 61.141 57.895 1.63 0.00 44.99 4.00
21 22 0.830444 AAGCCGTCTGGACACAGGTA 60.830 55.000 1.63 0.00 44.99 3.08
22 23 0.830444 AGCCGTCTGGACACAGGTAA 60.830 55.000 1.63 0.00 44.99 2.85
23 24 0.034337 GCCGTCTGGACACAGGTAAA 59.966 55.000 1.63 0.00 44.99 2.01
24 25 1.338769 GCCGTCTGGACACAGGTAAAT 60.339 52.381 1.63 0.00 44.99 1.40
25 26 2.093869 GCCGTCTGGACACAGGTAAATA 60.094 50.000 1.63 0.00 44.99 1.40
26 27 3.518590 CCGTCTGGACACAGGTAAATAC 58.481 50.000 1.63 0.00 44.99 1.89
27 28 3.056393 CCGTCTGGACACAGGTAAATACA 60.056 47.826 1.63 0.00 44.99 2.29
28 29 3.924686 CGTCTGGACACAGGTAAATACAC 59.075 47.826 1.63 0.00 44.99 2.90
29 30 4.251268 GTCTGGACACAGGTAAATACACC 58.749 47.826 0.00 0.00 44.99 4.16
39 40 3.195661 GGTAAATACACCTTGGCTCTCG 58.804 50.000 0.00 0.00 35.55 4.04
40 41 2.403252 AAATACACCTTGGCTCTCGG 57.597 50.000 0.00 0.00 0.00 4.63
41 42 0.541863 AATACACCTTGGCTCTCGGG 59.458 55.000 0.00 0.00 0.00 5.14
42 43 0.617820 ATACACCTTGGCTCTCGGGT 60.618 55.000 0.00 0.00 0.00 5.28
43 44 2.046892 CACCTTGGCTCTCGGGTG 60.047 66.667 0.00 0.00 42.29 4.61
44 45 4.021925 ACCTTGGCTCTCGGGTGC 62.022 66.667 0.00 0.00 0.00 5.01
56 57 2.034999 GGGTGCCCGTGGATTTGA 59.965 61.111 0.00 0.00 0.00 2.69
57 58 1.379843 GGGTGCCCGTGGATTTGAT 60.380 57.895 0.00 0.00 0.00 2.57
58 59 0.106918 GGGTGCCCGTGGATTTGATA 60.107 55.000 0.00 0.00 0.00 2.15
59 60 1.478654 GGGTGCCCGTGGATTTGATAT 60.479 52.381 0.00 0.00 0.00 1.63
60 61 1.608590 GGTGCCCGTGGATTTGATATG 59.391 52.381 0.00 0.00 0.00 1.78
61 62 1.608590 GTGCCCGTGGATTTGATATGG 59.391 52.381 0.00 0.00 0.00 2.74
62 63 1.492599 TGCCCGTGGATTTGATATGGA 59.507 47.619 0.00 0.00 0.00 3.41
63 64 2.092158 TGCCCGTGGATTTGATATGGAA 60.092 45.455 0.00 0.00 0.00 3.53
64 65 2.955660 GCCCGTGGATTTGATATGGAAA 59.044 45.455 0.00 0.00 0.00 3.13
65 66 3.383185 GCCCGTGGATTTGATATGGAAAA 59.617 43.478 0.00 0.00 0.00 2.29
66 67 4.039124 GCCCGTGGATTTGATATGGAAAAT 59.961 41.667 0.00 0.00 0.00 1.82
67 68 5.242838 GCCCGTGGATTTGATATGGAAAATA 59.757 40.000 0.00 0.00 0.00 1.40
68 69 6.239176 GCCCGTGGATTTGATATGGAAAATAA 60.239 38.462 0.00 0.00 0.00 1.40
69 70 7.525360 GCCCGTGGATTTGATATGGAAAATAAT 60.525 37.037 0.00 0.00 0.00 1.28
70 71 8.367156 CCCGTGGATTTGATATGGAAAATAATT 58.633 33.333 0.00 0.00 0.00 1.40
71 72 9.762933 CCGTGGATTTGATATGGAAAATAATTT 57.237 29.630 0.00 0.00 0.00 1.82
134 135 5.765576 AAACTTTTTGTGGGGTTAAAGGT 57.234 34.783 0.00 0.00 33.11 3.50
135 136 6.870895 AAACTTTTTGTGGGGTTAAAGGTA 57.129 33.333 0.00 0.00 33.11 3.08
136 137 7.440505 AAACTTTTTGTGGGGTTAAAGGTAT 57.559 32.000 0.00 0.00 33.11 2.73
137 138 7.440505 AACTTTTTGTGGGGTTAAAGGTATT 57.559 32.000 0.00 0.00 33.11 1.89
138 139 7.440505 ACTTTTTGTGGGGTTAAAGGTATTT 57.559 32.000 0.00 0.00 33.11 1.40
139 140 7.502696 ACTTTTTGTGGGGTTAAAGGTATTTC 58.497 34.615 0.00 0.00 33.11 2.17
140 141 7.125963 ACTTTTTGTGGGGTTAAAGGTATTTCA 59.874 33.333 0.00 0.00 33.11 2.69
141 142 7.619512 TTTTGTGGGGTTAAAGGTATTTCAT 57.380 32.000 0.00 0.00 0.00 2.57
142 143 7.619512 TTTGTGGGGTTAAAGGTATTTCATT 57.380 32.000 0.00 0.00 0.00 2.57
143 144 6.597832 TGTGGGGTTAAAGGTATTTCATTG 57.402 37.500 0.00 0.00 0.00 2.82
144 145 5.046950 TGTGGGGTTAAAGGTATTTCATTGC 60.047 40.000 0.00 0.00 0.00 3.56
145 146 5.186992 GTGGGGTTAAAGGTATTTCATTGCT 59.813 40.000 0.00 0.00 0.00 3.91
146 147 5.420739 TGGGGTTAAAGGTATTTCATTGCTC 59.579 40.000 0.00 0.00 0.00 4.26
147 148 5.420739 GGGGTTAAAGGTATTTCATTGCTCA 59.579 40.000 0.00 0.00 0.00 4.26
148 149 6.071051 GGGGTTAAAGGTATTTCATTGCTCAA 60.071 38.462 0.00 0.00 0.00 3.02
149 150 6.811665 GGGTTAAAGGTATTTCATTGCTCAAC 59.188 38.462 0.00 0.00 0.00 3.18
150 151 7.309805 GGGTTAAAGGTATTTCATTGCTCAACT 60.310 37.037 0.00 0.00 0.00 3.16
151 152 8.736244 GGTTAAAGGTATTTCATTGCTCAACTA 58.264 33.333 0.00 0.00 0.00 2.24
152 153 9.774742 GTTAAAGGTATTTCATTGCTCAACTAG 57.225 33.333 0.00 0.00 0.00 2.57
153 154 7.396540 AAAGGTATTTCATTGCTCAACTAGG 57.603 36.000 0.00 0.00 0.00 3.02
154 155 6.313519 AGGTATTTCATTGCTCAACTAGGA 57.686 37.500 0.00 0.00 0.00 2.94
155 156 6.352516 AGGTATTTCATTGCTCAACTAGGAG 58.647 40.000 0.00 0.00 37.97 3.69
156 157 5.529060 GGTATTTCATTGCTCAACTAGGAGG 59.471 44.000 0.00 0.00 35.41 4.30
157 158 3.634397 TTCATTGCTCAACTAGGAGGG 57.366 47.619 0.00 0.00 35.41 4.30
158 159 2.832838 TCATTGCTCAACTAGGAGGGA 58.167 47.619 0.00 0.00 35.41 4.20
159 160 2.768527 TCATTGCTCAACTAGGAGGGAG 59.231 50.000 0.00 0.00 35.41 4.30
160 161 1.573108 TTGCTCAACTAGGAGGGAGG 58.427 55.000 0.00 0.00 35.41 4.30
161 162 0.413832 TGCTCAACTAGGAGGGAGGT 59.586 55.000 0.00 0.00 35.41 3.85
162 163 1.116308 GCTCAACTAGGAGGGAGGTC 58.884 60.000 0.00 0.00 35.41 3.85
163 164 1.783071 CTCAACTAGGAGGGAGGTCC 58.217 60.000 0.00 0.00 36.79 4.46
172 173 2.922162 AGGGAGGTCCTGCATACAG 58.078 57.895 13.05 0.00 46.07 2.74
185 186 4.551702 TGCATACAGAGTTGTGGTACAT 57.448 40.909 0.00 0.00 44.52 2.29
186 187 4.905429 TGCATACAGAGTTGTGGTACATT 58.095 39.130 0.00 0.00 44.52 2.71
187 188 4.694982 TGCATACAGAGTTGTGGTACATTG 59.305 41.667 0.00 0.00 44.52 2.82
188 189 4.094887 GCATACAGAGTTGTGGTACATTGG 59.905 45.833 0.00 0.00 44.52 3.16
189 190 2.504367 ACAGAGTTGTGGTACATTGGC 58.496 47.619 0.00 0.00 44.52 4.52
190 191 2.158682 ACAGAGTTGTGGTACATTGGCA 60.159 45.455 0.00 0.00 44.52 4.92
191 192 2.485426 CAGAGTTGTGGTACATTGGCAG 59.515 50.000 0.00 0.00 44.52 4.85
192 193 1.812571 GAGTTGTGGTACATTGGCAGG 59.187 52.381 0.00 0.00 44.52 4.85
193 194 1.423541 AGTTGTGGTACATTGGCAGGA 59.576 47.619 0.00 0.00 44.52 3.86
194 195 1.539827 GTTGTGGTACATTGGCAGGAC 59.460 52.381 0.00 0.00 44.52 3.85
195 196 0.037590 TGTGGTACATTGGCAGGACC 59.962 55.000 1.18 1.18 44.52 4.46
196 197 0.679960 GTGGTACATTGGCAGGACCC 60.680 60.000 5.73 1.15 44.52 4.46
197 198 1.451387 GGTACATTGGCAGGACCCG 60.451 63.158 0.00 0.00 37.83 5.28
198 199 1.600107 GTACATTGGCAGGACCCGA 59.400 57.895 0.00 0.00 37.83 5.14
199 200 0.035820 GTACATTGGCAGGACCCGAA 60.036 55.000 0.00 0.00 37.83 4.30
200 201 0.035820 TACATTGGCAGGACCCGAAC 60.036 55.000 0.00 0.00 37.83 3.95
201 202 1.002134 CATTGGCAGGACCCGAACT 60.002 57.895 0.00 0.00 37.83 3.01
202 203 1.002134 ATTGGCAGGACCCGAACTG 60.002 57.895 0.00 0.00 37.83 3.16
203 204 1.779061 ATTGGCAGGACCCGAACTGT 61.779 55.000 0.00 0.00 37.83 3.55
204 205 1.990160 TTGGCAGGACCCGAACTGTT 61.990 55.000 0.00 0.00 37.83 3.16
205 206 1.671379 GGCAGGACCCGAACTGTTC 60.671 63.158 10.48 10.48 37.07 3.18
206 207 1.671379 GCAGGACCCGAACTGTTCC 60.671 63.158 14.48 1.16 37.07 3.62
207 208 1.752198 CAGGACCCGAACTGTTCCA 59.248 57.895 14.48 0.00 0.00 3.53
208 209 0.320771 CAGGACCCGAACTGTTCCAG 60.321 60.000 14.48 8.63 37.52 3.86
209 210 0.471211 AGGACCCGAACTGTTCCAGA 60.471 55.000 14.48 0.00 35.18 3.86
210 211 0.037232 GGACCCGAACTGTTCCAGAG 60.037 60.000 14.48 4.02 35.18 3.35
211 212 0.966920 GACCCGAACTGTTCCAGAGA 59.033 55.000 14.48 0.00 35.18 3.10
212 213 0.969894 ACCCGAACTGTTCCAGAGAG 59.030 55.000 14.48 0.00 35.18 3.20
213 214 0.969894 CCCGAACTGTTCCAGAGAGT 59.030 55.000 14.48 0.00 35.18 3.24
214 215 1.067495 CCCGAACTGTTCCAGAGAGTC 60.067 57.143 14.48 0.00 35.18 3.36
215 216 1.401670 CCGAACTGTTCCAGAGAGTCG 60.402 57.143 14.48 0.68 35.18 4.18
216 217 1.267261 CGAACTGTTCCAGAGAGTCGT 59.733 52.381 14.48 0.00 35.18 4.34
217 218 2.287668 CGAACTGTTCCAGAGAGTCGTT 60.288 50.000 14.48 0.00 35.18 3.85
218 219 3.310246 GAACTGTTCCAGAGAGTCGTTC 58.690 50.000 9.38 0.00 35.18 3.95
219 220 2.588620 ACTGTTCCAGAGAGTCGTTCT 58.411 47.619 0.00 0.00 39.43 3.01
220 221 3.752665 ACTGTTCCAGAGAGTCGTTCTA 58.247 45.455 0.00 0.00 35.87 2.10
221 222 4.337145 ACTGTTCCAGAGAGTCGTTCTAT 58.663 43.478 0.00 0.00 35.87 1.98
222 223 4.767928 ACTGTTCCAGAGAGTCGTTCTATT 59.232 41.667 0.00 0.00 35.87 1.73
223 224 5.060662 TGTTCCAGAGAGTCGTTCTATTG 57.939 43.478 0.00 0.00 35.87 1.90
224 225 3.784701 TCCAGAGAGTCGTTCTATTGC 57.215 47.619 0.00 0.00 35.87 3.56
225 226 2.427453 TCCAGAGAGTCGTTCTATTGCC 59.573 50.000 0.00 0.00 35.87 4.52
226 227 2.428890 CCAGAGAGTCGTTCTATTGCCT 59.571 50.000 0.00 0.00 35.87 4.75
227 228 3.118956 CCAGAGAGTCGTTCTATTGCCTT 60.119 47.826 0.00 0.00 35.87 4.35
228 229 3.862267 CAGAGAGTCGTTCTATTGCCTTG 59.138 47.826 0.00 0.00 35.87 3.61
229 230 2.605366 GAGAGTCGTTCTATTGCCTTGC 59.395 50.000 0.00 0.00 35.87 4.01
230 231 2.028112 AGAGTCGTTCTATTGCCTTGCA 60.028 45.455 0.00 0.00 33.23 4.08
231 232 5.387600 GAGAGTCGTTCTATTGCCTTGCAA 61.388 45.833 3.73 3.73 44.09 4.08
232 233 6.815840 GAGAGTCGTTCTATTGCCTTGCAAA 61.816 44.000 5.51 0.00 43.57 3.68
233 234 8.211869 GAGAGTCGTTCTATTGCCTTGCAAAA 62.212 42.308 5.51 0.00 43.57 2.44
234 235 9.427079 GAGAGTCGTTCTATTGCCTTGCAAAAT 62.427 40.741 5.51 0.00 43.57 1.82
244 245 6.992063 TTGCCTTGCAAAATTTTAAGTTCA 57.008 29.167 2.44 3.11 45.96 3.18
245 246 6.992063 TGCCTTGCAAAATTTTAAGTTCAA 57.008 29.167 2.44 3.12 34.76 2.69
246 247 7.383102 TGCCTTGCAAAATTTTAAGTTCAAA 57.617 28.000 2.44 0.00 34.76 2.69
247 248 7.247019 TGCCTTGCAAAATTTTAAGTTCAAAC 58.753 30.769 2.44 0.96 34.76 2.93
248 249 7.094634 TGCCTTGCAAAATTTTAAGTTCAAACA 60.095 29.630 2.44 3.03 34.76 2.83
249 250 7.218014 GCCTTGCAAAATTTTAAGTTCAAACAC 59.782 33.333 2.44 0.00 0.00 3.32
250 251 8.233190 CCTTGCAAAATTTTAAGTTCAAACACA 58.767 29.630 2.44 0.00 0.00 3.72
251 252 9.771915 CTTGCAAAATTTTAAGTTCAAACACAT 57.228 25.926 2.44 0.00 0.00 3.21
264 265 8.197988 AGTTCAAACACATTACGAGATATTCC 57.802 34.615 0.00 0.00 0.00 3.01
265 266 7.280205 AGTTCAAACACATTACGAGATATTCCC 59.720 37.037 0.00 0.00 0.00 3.97
266 267 5.751509 TCAAACACATTACGAGATATTCCCG 59.248 40.000 0.00 0.00 0.00 5.14
267 268 5.524971 AACACATTACGAGATATTCCCGA 57.475 39.130 0.00 0.00 0.00 5.14
268 269 5.524971 ACACATTACGAGATATTCCCGAA 57.475 39.130 0.00 0.00 0.00 4.30
269 270 5.909477 ACACATTACGAGATATTCCCGAAA 58.091 37.500 0.00 0.00 0.00 3.46
270 271 6.342906 ACACATTACGAGATATTCCCGAAAA 58.657 36.000 0.00 0.00 0.00 2.29
271 272 6.819649 ACACATTACGAGATATTCCCGAAAAA 59.180 34.615 0.00 0.00 0.00 1.94
294 295 7.849804 AAAAACACATTACGAGATATGAGCT 57.150 32.000 0.00 0.00 0.00 4.09
295 296 8.942338 AAAAACACATTACGAGATATGAGCTA 57.058 30.769 0.00 0.00 0.00 3.32
296 297 9.547753 AAAAACACATTACGAGATATGAGCTAT 57.452 29.630 0.00 0.00 0.00 2.97
297 298 8.526218 AAACACATTACGAGATATGAGCTATG 57.474 34.615 0.00 0.00 0.00 2.23
298 299 7.454260 ACACATTACGAGATATGAGCTATGA 57.546 36.000 0.00 0.00 0.00 2.15
299 300 7.886338 ACACATTACGAGATATGAGCTATGAA 58.114 34.615 0.00 0.00 0.00 2.57
300 301 8.360390 ACACATTACGAGATATGAGCTATGAAA 58.640 33.333 0.00 0.00 0.00 2.69
301 302 9.196552 CACATTACGAGATATGAGCTATGAAAA 57.803 33.333 0.00 0.00 0.00 2.29
302 303 9.764363 ACATTACGAGATATGAGCTATGAAAAA 57.236 29.630 0.00 0.00 0.00 1.94
324 325 7.878477 AAAACACAATCAGCATTGAATAGTG 57.122 32.000 3.92 4.59 41.97 2.74
325 326 4.990257 ACACAATCAGCATTGAATAGTGC 58.010 39.130 3.92 0.00 41.97 4.40
326 327 4.142315 ACACAATCAGCATTGAATAGTGCC 60.142 41.667 3.92 0.00 41.97 5.01
327 328 4.018490 ACAATCAGCATTGAATAGTGCCA 58.982 39.130 3.92 0.00 41.97 4.92
328 329 4.463539 ACAATCAGCATTGAATAGTGCCAA 59.536 37.500 3.92 0.00 41.97 4.52
329 330 5.047164 ACAATCAGCATTGAATAGTGCCAAA 60.047 36.000 3.92 0.00 41.97 3.28
330 331 4.439305 TCAGCATTGAATAGTGCCAAAC 57.561 40.909 0.00 0.00 42.20 2.93
331 332 3.825585 TCAGCATTGAATAGTGCCAAACA 59.174 39.130 0.00 0.00 42.20 2.83
332 333 4.082625 TCAGCATTGAATAGTGCCAAACAG 60.083 41.667 0.00 0.00 42.20 3.16
333 334 3.828451 AGCATTGAATAGTGCCAAACAGT 59.172 39.130 0.00 0.00 42.20 3.55
334 335 5.009631 AGCATTGAATAGTGCCAAACAGTA 58.990 37.500 0.00 0.00 42.20 2.74
335 336 5.476599 AGCATTGAATAGTGCCAAACAGTAA 59.523 36.000 0.00 0.00 42.20 2.24
336 337 5.572896 GCATTGAATAGTGCCAAACAGTAAC 59.427 40.000 0.00 0.00 37.72 2.50
337 338 5.351233 TTGAATAGTGCCAAACAGTAACG 57.649 39.130 0.00 0.00 37.72 3.18
338 339 4.382291 TGAATAGTGCCAAACAGTAACGT 58.618 39.130 0.00 0.00 37.72 3.99
339 340 4.449743 TGAATAGTGCCAAACAGTAACGTC 59.550 41.667 0.00 0.00 37.72 4.34
340 341 2.319136 AGTGCCAAACAGTAACGTCA 57.681 45.000 0.00 0.00 0.00 4.35
341 342 1.937899 AGTGCCAAACAGTAACGTCAC 59.062 47.619 0.00 0.00 0.00 3.67
342 343 1.937899 GTGCCAAACAGTAACGTCACT 59.062 47.619 0.00 0.00 0.00 3.41
343 344 3.125316 GTGCCAAACAGTAACGTCACTA 58.875 45.455 0.00 0.00 0.00 2.74
344 345 3.744426 GTGCCAAACAGTAACGTCACTAT 59.256 43.478 0.00 0.00 0.00 2.12
345 346 4.212636 GTGCCAAACAGTAACGTCACTATT 59.787 41.667 0.00 0.00 0.00 1.73
346 347 4.449743 TGCCAAACAGTAACGTCACTATTC 59.550 41.667 0.00 0.00 0.00 1.75
347 348 4.449743 GCCAAACAGTAACGTCACTATTCA 59.550 41.667 0.00 0.00 0.00 2.57
348 349 5.121768 GCCAAACAGTAACGTCACTATTCAT 59.878 40.000 0.00 0.00 0.00 2.57
349 350 6.348213 GCCAAACAGTAACGTCACTATTCATT 60.348 38.462 0.00 0.00 0.00 2.57
350 351 7.015289 CCAAACAGTAACGTCACTATTCATTG 58.985 38.462 0.00 0.00 0.00 2.82
351 352 5.779806 ACAGTAACGTCACTATTCATTGC 57.220 39.130 0.00 0.00 0.00 3.56
352 353 5.479306 ACAGTAACGTCACTATTCATTGCT 58.521 37.500 0.00 0.00 0.00 3.91
353 354 5.348724 ACAGTAACGTCACTATTCATTGCTG 59.651 40.000 0.00 0.00 36.31 4.41
354 355 5.576774 CAGTAACGTCACTATTCATTGCTGA 59.423 40.000 0.00 0.00 33.29 4.26
355 356 6.090763 CAGTAACGTCACTATTCATTGCTGAA 59.909 38.462 0.00 0.00 45.15 3.02
383 384 1.904287 TTTTACAGCTTGCATCCCGT 58.096 45.000 0.00 0.00 0.00 5.28
384 385 2.772077 TTTACAGCTTGCATCCCGTA 57.228 45.000 0.00 0.00 0.00 4.02
385 386 2.772077 TTACAGCTTGCATCCCGTAA 57.228 45.000 0.00 0.00 0.00 3.18
386 387 3.275617 TTACAGCTTGCATCCCGTAAT 57.724 42.857 0.00 0.00 0.00 1.89
387 388 1.382522 ACAGCTTGCATCCCGTAATG 58.617 50.000 0.00 0.00 0.00 1.90
388 389 1.340017 ACAGCTTGCATCCCGTAATGT 60.340 47.619 0.00 0.00 0.00 2.71
389 390 2.093181 ACAGCTTGCATCCCGTAATGTA 60.093 45.455 0.00 0.00 0.00 2.29
390 391 3.141398 CAGCTTGCATCCCGTAATGTAT 58.859 45.455 0.00 0.00 0.00 2.29
391 392 3.565482 CAGCTTGCATCCCGTAATGTATT 59.435 43.478 0.00 0.00 0.00 1.89
392 393 4.036734 CAGCTTGCATCCCGTAATGTATTT 59.963 41.667 0.00 0.00 0.00 1.40
393 394 4.644685 AGCTTGCATCCCGTAATGTATTTT 59.355 37.500 0.00 0.00 0.00 1.82
394 395 5.825679 AGCTTGCATCCCGTAATGTATTTTA 59.174 36.000 0.00 0.00 0.00 1.52
395 396 6.320164 AGCTTGCATCCCGTAATGTATTTTAA 59.680 34.615 0.00 0.00 0.00 1.52
396 397 6.416750 GCTTGCATCCCGTAATGTATTTTAAC 59.583 38.462 0.00 0.00 0.00 2.01
397 398 7.633193 TTGCATCCCGTAATGTATTTTAACT 57.367 32.000 0.00 0.00 0.00 2.24
398 399 7.633193 TGCATCCCGTAATGTATTTTAACTT 57.367 32.000 0.00 0.00 0.00 2.66
399 400 7.476667 TGCATCCCGTAATGTATTTTAACTTG 58.523 34.615 0.00 0.00 0.00 3.16
400 401 7.337184 TGCATCCCGTAATGTATTTTAACTTGA 59.663 33.333 0.00 0.00 0.00 3.02
401 402 8.185505 GCATCCCGTAATGTATTTTAACTTGAA 58.814 33.333 0.00 0.00 0.00 2.69
430 431 9.716531 TTCACATGACAATAGAATATCATCCTC 57.283 33.333 0.00 0.00 29.25 3.71
431 432 9.097946 TCACATGACAATAGAATATCATCCTCT 57.902 33.333 0.00 0.00 29.25 3.69
432 433 9.722184 CACATGACAATAGAATATCATCCTCTT 57.278 33.333 0.00 0.00 29.25 2.85
441 442 7.878621 AGAATATCATCCTCTTAACATCCCA 57.121 36.000 0.00 0.00 0.00 4.37
442 443 7.684529 AGAATATCATCCTCTTAACATCCCAC 58.315 38.462 0.00 0.00 0.00 4.61
443 444 7.293299 AGAATATCATCCTCTTAACATCCCACA 59.707 37.037 0.00 0.00 0.00 4.17
444 445 5.715439 ATCATCCTCTTAACATCCCACAA 57.285 39.130 0.00 0.00 0.00 3.33
445 446 5.715439 TCATCCTCTTAACATCCCACAAT 57.285 39.130 0.00 0.00 0.00 2.71
446 447 6.078456 TCATCCTCTTAACATCCCACAATT 57.922 37.500 0.00 0.00 0.00 2.32
447 448 6.493166 TCATCCTCTTAACATCCCACAATTT 58.507 36.000 0.00 0.00 0.00 1.82
448 449 6.953520 TCATCCTCTTAACATCCCACAATTTT 59.046 34.615 0.00 0.00 0.00 1.82
449 450 7.454380 TCATCCTCTTAACATCCCACAATTTTT 59.546 33.333 0.00 0.00 0.00 1.94
472 473 7.447374 TTTTCAAAATATCGTCCTGTGATGT 57.553 32.000 0.00 0.00 0.00 3.06
473 474 6.421377 TTCAAAATATCGTCCTGTGATGTG 57.579 37.500 0.00 0.00 0.00 3.21
474 475 5.487433 TCAAAATATCGTCCTGTGATGTGT 58.513 37.500 0.00 0.00 0.00 3.72
475 476 5.937540 TCAAAATATCGTCCTGTGATGTGTT 59.062 36.000 0.00 0.00 0.00 3.32
476 477 6.429692 TCAAAATATCGTCCTGTGATGTGTTT 59.570 34.615 0.00 0.00 0.00 2.83
477 478 6.817765 AAATATCGTCCTGTGATGTGTTTT 57.182 33.333 0.00 0.00 0.00 2.43
478 479 7.915293 AAATATCGTCCTGTGATGTGTTTTA 57.085 32.000 0.00 0.00 0.00 1.52
479 480 7.915293 AATATCGTCCTGTGATGTGTTTTAA 57.085 32.000 0.00 0.00 0.00 1.52
480 481 5.607119 ATCGTCCTGTGATGTGTTTTAAC 57.393 39.130 0.00 0.00 0.00 2.01
481 482 4.699637 TCGTCCTGTGATGTGTTTTAACT 58.300 39.130 0.00 0.00 0.00 2.24
482 483 5.120399 TCGTCCTGTGATGTGTTTTAACTT 58.880 37.500 0.00 0.00 0.00 2.66
483 484 5.007234 TCGTCCTGTGATGTGTTTTAACTTG 59.993 40.000 0.00 0.00 0.00 3.16
484 485 5.220777 CGTCCTGTGATGTGTTTTAACTTGT 60.221 40.000 0.00 0.00 0.00 3.16
485 486 6.560711 GTCCTGTGATGTGTTTTAACTTGTT 58.439 36.000 0.00 0.00 0.00 2.83
486 487 7.466185 CGTCCTGTGATGTGTTTTAACTTGTTA 60.466 37.037 0.00 0.00 0.00 2.41
487 488 8.349983 GTCCTGTGATGTGTTTTAACTTGTTAT 58.650 33.333 0.00 0.00 0.00 1.89
488 489 8.349245 TCCTGTGATGTGTTTTAACTTGTTATG 58.651 33.333 0.00 0.00 0.00 1.90
489 490 7.114811 CCTGTGATGTGTTTTAACTTGTTATGC 59.885 37.037 0.00 0.00 0.00 3.14
490 491 6.920758 TGTGATGTGTTTTAACTTGTTATGCC 59.079 34.615 0.00 0.00 0.00 4.40
491 492 6.920758 GTGATGTGTTTTAACTTGTTATGCCA 59.079 34.615 0.00 0.00 0.00 4.92
492 493 7.598493 GTGATGTGTTTTAACTTGTTATGCCAT 59.402 33.333 0.00 0.00 0.00 4.40
493 494 8.797438 TGATGTGTTTTAACTTGTTATGCCATA 58.203 29.630 0.00 0.00 0.00 2.74
494 495 8.980143 ATGTGTTTTAACTTGTTATGCCATAC 57.020 30.769 0.00 0.00 0.00 2.39
495 496 8.172352 TGTGTTTTAACTTGTTATGCCATACT 57.828 30.769 0.00 0.00 0.00 2.12
496 497 9.286170 TGTGTTTTAACTTGTTATGCCATACTA 57.714 29.630 0.00 0.00 0.00 1.82
497 498 9.550811 GTGTTTTAACTTGTTATGCCATACTAC 57.449 33.333 0.00 0.00 0.00 2.73
498 499 9.509956 TGTTTTAACTTGTTATGCCATACTACT 57.490 29.630 0.00 0.00 0.00 2.57
565 566 7.406553 CGTACAACAAAGTTTCATTCAGAAGA 58.593 34.615 0.00 0.00 37.57 2.87
570 571 9.962759 CAACAAAGTTTCATTCAGAAGAAAAAG 57.037 29.630 8.49 4.19 37.57 2.27
596 599 1.268899 CTTCCTCAAGCAACTTGCCAG 59.731 52.381 10.25 3.62 46.52 4.85
599 602 2.158682 TCCTCAAGCAACTTGCCAGTTA 60.159 45.455 10.25 0.00 46.52 2.24
695 698 2.092592 ACCCCGTTATTGTGGATTCCTC 60.093 50.000 3.95 0.59 0.00 3.71
751 763 8.946085 TGTCACACTTGATCATTCTAAATTACC 58.054 33.333 0.00 0.00 33.11 2.85
798 810 0.583438 CAAGATAGCGGACGCCATTG 59.417 55.000 13.63 9.29 43.17 2.82
799 811 0.464036 AAGATAGCGGACGCCATTGA 59.536 50.000 13.63 0.00 43.17 2.57
836 848 8.900781 CCAGTTTAGTGTATAGAACTACTGCTA 58.099 37.037 10.42 0.00 34.80 3.49
863 875 5.023533 TCCACTGAATCAGTTAGCATACC 57.976 43.478 13.99 0.00 42.59 2.73
864 876 3.804325 CCACTGAATCAGTTAGCATACCG 59.196 47.826 13.99 0.00 42.59 4.02
866 878 3.118775 ACTGAATCAGTTAGCATACCGCA 60.119 43.478 10.56 0.00 42.59 5.69
918 930 3.072944 CTCTTCTTCCTTCACAAGCCAG 58.927 50.000 0.00 0.00 0.00 4.85
933 945 2.383527 CCAGACCGCGACAAGAAGC 61.384 63.158 8.23 0.00 0.00 3.86
945 957 1.705186 ACAAGAAGCTAGGGCAGGAAA 59.295 47.619 0.00 0.00 41.70 3.13
948 960 3.746792 AGAAGCTAGGGCAGGAAATTT 57.253 42.857 0.00 0.00 41.70 1.82
949 961 4.862641 AGAAGCTAGGGCAGGAAATTTA 57.137 40.909 0.00 0.00 41.70 1.40
950 962 4.786425 AGAAGCTAGGGCAGGAAATTTAG 58.214 43.478 0.00 0.00 41.70 1.85
951 963 4.228438 AGAAGCTAGGGCAGGAAATTTAGT 59.772 41.667 0.00 0.00 41.70 2.24
952 964 4.592997 AGCTAGGGCAGGAAATTTAGTT 57.407 40.909 0.00 0.00 41.70 2.24
953 965 4.527944 AGCTAGGGCAGGAAATTTAGTTC 58.472 43.478 0.00 0.00 41.70 3.01
954 966 3.312697 GCTAGGGCAGGAAATTTAGTTCG 59.687 47.826 0.00 0.00 38.54 3.95
957 969 5.112129 AGGGCAGGAAATTTAGTTCGTAT 57.888 39.130 0.00 0.00 0.00 3.06
961 973 6.017357 GGGCAGGAAATTTAGTTCGTATTAGG 60.017 42.308 0.00 0.00 0.00 2.69
983 995 7.823745 AGGAAGAAACTAAAATCAAAGCAGA 57.176 32.000 0.00 0.00 0.00 4.26
984 996 8.414629 AGGAAGAAACTAAAATCAAAGCAGAT 57.585 30.769 0.00 0.00 0.00 2.90
985 997 8.518702 AGGAAGAAACTAAAATCAAAGCAGATC 58.481 33.333 0.00 0.00 0.00 2.75
986 998 8.299570 GGAAGAAACTAAAATCAAAGCAGATCA 58.700 33.333 0.00 0.00 0.00 2.92
987 999 9.122613 GAAGAAACTAAAATCAAAGCAGATCAC 57.877 33.333 0.00 0.00 0.00 3.06
1027 1039 5.688621 GCGACCAAGATATACATCGTGTAAA 59.311 40.000 0.00 0.00 38.54 2.01
1049 1061 1.952102 AATGCATGCTCCGCCTTTGG 61.952 55.000 20.33 0.00 0.00 3.28
1052 1064 2.436646 ATGCTCCGCCTTTGGTCG 60.437 61.111 0.00 0.00 0.00 4.79
1125 1139 7.750903 GCCGCTCTGTATTATTTTCATTTATCC 59.249 37.037 0.00 0.00 0.00 2.59
1142 1157 4.970174 CGCAGGTACTACTCGACG 57.030 61.111 0.00 0.00 36.02 5.12
1380 1395 3.390183 ATGGCCGCGCAGATGAAGA 62.390 57.895 8.75 0.00 0.00 2.87
1541 1556 2.281484 ATGCTGTTCGTGCCGGTT 60.281 55.556 1.90 0.00 0.00 4.44
1745 1760 9.661563 TGAAATCTGATTTACTACACCGTAATT 57.338 29.630 15.14 0.00 31.47 1.40
1751 1766 6.819146 TGATTTACTACACCGTAATTCATGCA 59.181 34.615 0.00 0.00 36.03 3.96
1776 1791 2.802247 CAGTGCAAAGATGAACTCGTCA 59.198 45.455 0.00 0.00 42.06 4.35
1782 1797 7.170489 AGTGCAAAGATGAACTCGTCATATATG 59.830 37.037 6.36 6.36 42.06 1.78
1821 1838 2.803956 ACAATTCTGTAACACGTTCCCG 59.196 45.455 0.00 0.00 35.23 5.14
1834 1851 1.520494 GTTCCCGTTCCTTTCCACTC 58.480 55.000 0.00 0.00 0.00 3.51
1909 1965 9.507329 AGCTCTGACTTTGACTTATTAATTCAA 57.493 29.630 5.39 5.39 0.00 2.69
2014 2070 8.877864 AAGAAATTACAACCAGATTACATCCA 57.122 30.769 0.00 0.00 0.00 3.41
2025 2082 5.088739 CAGATTACATCCAAAAAGACACGC 58.911 41.667 0.00 0.00 0.00 5.34
2029 2086 1.267806 CATCCAAAAAGACACGCAGCT 59.732 47.619 0.00 0.00 0.00 4.24
2037 2097 4.623814 ACACGCAGCTGCATGTAT 57.376 50.000 36.53 15.50 46.24 2.29
2054 2114 0.326595 TATGCAAAGGAGGGACGCAA 59.673 50.000 0.00 0.00 35.98 4.85
2055 2115 1.244019 ATGCAAAGGAGGGACGCAAC 61.244 55.000 0.00 0.00 35.98 4.17
2072 2132 1.737793 CAACTGGTTAATGTCCTCCGC 59.262 52.381 0.00 0.00 0.00 5.54
2077 2137 1.278238 GTTAATGTCCTCCGCGACAG 58.722 55.000 8.23 2.21 45.55 3.51
2094 2154 3.615110 CGACAGAGTATGCAACCTCAAGT 60.615 47.826 15.82 13.40 0.00 3.16
2096 2156 5.479306 GACAGAGTATGCAACCTCAAGTAA 58.521 41.667 15.82 0.00 0.00 2.24
2113 2173 5.960811 TCAAGTAAGATGAGGGAGAAGTCAT 59.039 40.000 0.00 0.00 36.07 3.06
2127 2187 3.859961 AGAAGTCATTGAAGATACGCACG 59.140 43.478 0.00 0.00 0.00 5.34
2129 2189 4.046938 AGTCATTGAAGATACGCACGAT 57.953 40.909 0.00 0.00 0.00 3.73
2150 2210 5.790988 CGATAACACATACTAGATCGACAGC 59.209 44.000 0.00 0.00 38.71 4.40
2277 2338 5.503031 CGCTCATATTCAACAGGACAATGAC 60.503 44.000 0.00 0.00 0.00 3.06
2281 2342 8.492673 TCATATTCAACAGGACAATGACTTAC 57.507 34.615 0.00 0.00 0.00 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.669115 CCTGTGTCCAGACGGCTTG 60.669 63.158 0.00 0.00 41.50 4.01
4 5 0.034337 TTTACCTGTGTCCAGACGGC 59.966 55.000 0.00 0.00 41.50 5.68
6 7 3.924686 GTGTATTTACCTGTGTCCAGACG 59.075 47.826 0.00 0.00 41.50 4.18
7 8 4.251268 GGTGTATTTACCTGTGTCCAGAC 58.749 47.826 0.00 0.00 41.50 3.51
18 19 3.195661 CGAGAGCCAAGGTGTATTTACC 58.804 50.000 0.00 0.00 41.17 2.85
19 20 3.195661 CCGAGAGCCAAGGTGTATTTAC 58.804 50.000 0.00 0.00 0.00 2.01
20 21 2.169769 CCCGAGAGCCAAGGTGTATTTA 59.830 50.000 0.00 0.00 0.00 1.40
21 22 1.065418 CCCGAGAGCCAAGGTGTATTT 60.065 52.381 0.00 0.00 0.00 1.40
22 23 0.541863 CCCGAGAGCCAAGGTGTATT 59.458 55.000 0.00 0.00 0.00 1.89
23 24 0.617820 ACCCGAGAGCCAAGGTGTAT 60.618 55.000 0.00 0.00 0.00 2.29
24 25 1.229082 ACCCGAGAGCCAAGGTGTA 60.229 57.895 0.00 0.00 0.00 2.90
25 26 2.526873 ACCCGAGAGCCAAGGTGT 60.527 61.111 0.00 0.00 0.00 4.16
26 27 2.046892 CACCCGAGAGCCAAGGTG 60.047 66.667 0.00 0.00 43.50 4.00
27 28 4.021925 GCACCCGAGAGCCAAGGT 62.022 66.667 0.00 0.00 0.00 3.50
41 42 1.608590 CCATATCAAATCCACGGGCAC 59.391 52.381 0.00 0.00 0.00 5.01
42 43 1.492599 TCCATATCAAATCCACGGGCA 59.507 47.619 0.00 0.00 0.00 5.36
43 44 2.270352 TCCATATCAAATCCACGGGC 57.730 50.000 0.00 0.00 0.00 6.13
44 45 5.789643 ATTTTCCATATCAAATCCACGGG 57.210 39.130 0.00 0.00 0.00 5.28
45 46 9.762933 AAATTATTTTCCATATCAAATCCACGG 57.237 29.630 0.00 0.00 0.00 4.94
110 111 6.544650 ACCTTTAACCCCACAAAAAGTTTTT 58.455 32.000 7.79 7.79 0.00 1.94
111 112 6.129414 ACCTTTAACCCCACAAAAAGTTTT 57.871 33.333 0.00 0.00 0.00 2.43
112 113 5.765576 ACCTTTAACCCCACAAAAAGTTT 57.234 34.783 0.00 0.00 0.00 2.66
113 114 7.440505 AATACCTTTAACCCCACAAAAAGTT 57.559 32.000 0.00 0.00 0.00 2.66
114 115 7.125963 TGAAATACCTTTAACCCCACAAAAAGT 59.874 33.333 0.00 0.00 0.00 2.66
115 116 7.501844 TGAAATACCTTTAACCCCACAAAAAG 58.498 34.615 0.00 0.00 0.00 2.27
116 117 7.433537 TGAAATACCTTTAACCCCACAAAAA 57.566 32.000 0.00 0.00 0.00 1.94
117 118 7.619512 ATGAAATACCTTTAACCCCACAAAA 57.380 32.000 0.00 0.00 0.00 2.44
118 119 7.445945 CAATGAAATACCTTTAACCCCACAAA 58.554 34.615 0.00 0.00 0.00 2.83
119 120 6.519213 GCAATGAAATACCTTTAACCCCACAA 60.519 38.462 0.00 0.00 0.00 3.33
120 121 5.046950 GCAATGAAATACCTTTAACCCCACA 60.047 40.000 0.00 0.00 0.00 4.17
121 122 5.186992 AGCAATGAAATACCTTTAACCCCAC 59.813 40.000 0.00 0.00 0.00 4.61
122 123 5.337788 AGCAATGAAATACCTTTAACCCCA 58.662 37.500 0.00 0.00 0.00 4.96
123 124 5.420739 TGAGCAATGAAATACCTTTAACCCC 59.579 40.000 0.00 0.00 0.00 4.95
124 125 6.524101 TGAGCAATGAAATACCTTTAACCC 57.476 37.500 0.00 0.00 0.00 4.11
125 126 7.602753 AGTTGAGCAATGAAATACCTTTAACC 58.397 34.615 0.00 0.00 0.00 2.85
126 127 9.774742 CTAGTTGAGCAATGAAATACCTTTAAC 57.225 33.333 0.00 0.00 0.00 2.01
127 128 8.956426 CCTAGTTGAGCAATGAAATACCTTTAA 58.044 33.333 0.00 0.00 0.00 1.52
128 129 8.325787 TCCTAGTTGAGCAATGAAATACCTTTA 58.674 33.333 0.00 0.00 0.00 1.85
129 130 7.175104 TCCTAGTTGAGCAATGAAATACCTTT 58.825 34.615 0.00 0.00 0.00 3.11
130 131 6.721318 TCCTAGTTGAGCAATGAAATACCTT 58.279 36.000 0.00 0.00 0.00 3.50
131 132 6.313519 TCCTAGTTGAGCAATGAAATACCT 57.686 37.500 0.00 0.00 0.00 3.08
132 133 5.529060 CCTCCTAGTTGAGCAATGAAATACC 59.471 44.000 0.00 0.00 0.00 2.73
133 134 5.529060 CCCTCCTAGTTGAGCAATGAAATAC 59.471 44.000 0.00 0.00 0.00 1.89
134 135 5.428457 TCCCTCCTAGTTGAGCAATGAAATA 59.572 40.000 0.00 0.00 0.00 1.40
135 136 4.228210 TCCCTCCTAGTTGAGCAATGAAAT 59.772 41.667 0.00 0.00 0.00 2.17
136 137 3.587061 TCCCTCCTAGTTGAGCAATGAAA 59.413 43.478 0.00 0.00 0.00 2.69
137 138 3.181329 TCCCTCCTAGTTGAGCAATGAA 58.819 45.455 0.00 0.00 0.00 2.57
138 139 2.768527 CTCCCTCCTAGTTGAGCAATGA 59.231 50.000 0.00 0.00 0.00 2.57
139 140 2.158842 CCTCCCTCCTAGTTGAGCAATG 60.159 54.545 0.00 0.00 0.00 2.82
140 141 2.122768 CCTCCCTCCTAGTTGAGCAAT 58.877 52.381 0.00 0.00 0.00 3.56
141 142 1.203313 ACCTCCCTCCTAGTTGAGCAA 60.203 52.381 0.00 0.00 0.00 3.91
142 143 0.413832 ACCTCCCTCCTAGTTGAGCA 59.586 55.000 0.00 0.00 0.00 4.26
143 144 1.116308 GACCTCCCTCCTAGTTGAGC 58.884 60.000 0.00 0.00 0.00 4.26
144 145 1.289530 AGGACCTCCCTCCTAGTTGAG 59.710 57.143 0.00 0.00 43.31 3.02
145 146 1.007238 CAGGACCTCCCTCCTAGTTGA 59.993 57.143 0.00 0.00 45.60 3.18
146 147 1.490574 CAGGACCTCCCTCCTAGTTG 58.509 60.000 0.00 0.00 45.60 3.16
147 148 0.325765 GCAGGACCTCCCTCCTAGTT 60.326 60.000 0.00 0.00 45.60 2.24
148 149 1.311747 GCAGGACCTCCCTCCTAGT 59.688 63.158 0.00 0.00 45.60 2.57
149 150 0.105246 ATGCAGGACCTCCCTCCTAG 60.105 60.000 0.00 0.00 45.60 3.02
150 151 1.133136 GTATGCAGGACCTCCCTCCTA 60.133 57.143 0.00 0.00 45.60 2.94
151 152 0.399233 GTATGCAGGACCTCCCTCCT 60.399 60.000 0.00 0.00 45.60 3.69
152 153 0.691078 TGTATGCAGGACCTCCCTCC 60.691 60.000 0.00 0.00 45.60 4.30
153 154 0.755686 CTGTATGCAGGACCTCCCTC 59.244 60.000 2.35 0.00 45.60 4.30
155 156 0.755686 CTCTGTATGCAGGACCTCCC 59.244 60.000 11.15 0.00 42.78 4.30
156 157 1.490574 ACTCTGTATGCAGGACCTCC 58.509 55.000 11.15 0.00 42.78 4.30
157 158 2.234908 ACAACTCTGTATGCAGGACCTC 59.765 50.000 11.15 0.00 42.78 3.85
158 159 2.027745 CACAACTCTGTATGCAGGACCT 60.028 50.000 11.15 0.00 42.78 3.85
159 160 2.350522 CACAACTCTGTATGCAGGACC 58.649 52.381 11.15 0.00 42.78 4.46
160 161 2.289694 ACCACAACTCTGTATGCAGGAC 60.290 50.000 11.15 0.00 42.78 3.85
161 162 1.977854 ACCACAACTCTGTATGCAGGA 59.022 47.619 11.15 0.00 42.78 3.86
162 163 2.479566 ACCACAACTCTGTATGCAGG 57.520 50.000 11.15 4.52 42.78 4.85
163 164 3.925379 TGTACCACAACTCTGTATGCAG 58.075 45.455 4.14 4.14 43.87 4.41
164 165 4.551702 ATGTACCACAACTCTGTATGCA 57.448 40.909 0.00 0.00 33.22 3.96
165 166 4.094887 CCAATGTACCACAACTCTGTATGC 59.905 45.833 0.00 0.00 33.22 3.14
166 167 4.094887 GCCAATGTACCACAACTCTGTATG 59.905 45.833 0.00 0.00 33.22 2.39
167 168 4.261801 GCCAATGTACCACAACTCTGTAT 58.738 43.478 0.00 0.00 33.22 2.29
168 169 3.071747 TGCCAATGTACCACAACTCTGTA 59.928 43.478 0.00 0.00 33.22 2.74
169 170 2.158682 TGCCAATGTACCACAACTCTGT 60.159 45.455 0.00 0.00 35.63 3.41
170 171 2.485426 CTGCCAATGTACCACAACTCTG 59.515 50.000 0.00 0.00 0.00 3.35
171 172 2.553028 CCTGCCAATGTACCACAACTCT 60.553 50.000 0.00 0.00 0.00 3.24
172 173 1.812571 CCTGCCAATGTACCACAACTC 59.187 52.381 0.00 0.00 0.00 3.01
173 174 1.423541 TCCTGCCAATGTACCACAACT 59.576 47.619 0.00 0.00 0.00 3.16
174 175 1.539827 GTCCTGCCAATGTACCACAAC 59.460 52.381 0.00 0.00 0.00 3.32
175 176 1.546773 GGTCCTGCCAATGTACCACAA 60.547 52.381 0.00 0.00 37.17 3.33
176 177 0.037590 GGTCCTGCCAATGTACCACA 59.962 55.000 0.00 0.00 37.17 4.17
177 178 0.679960 GGGTCCTGCCAATGTACCAC 60.680 60.000 0.00 0.00 39.65 4.16
178 179 1.688811 GGGTCCTGCCAATGTACCA 59.311 57.895 0.00 0.00 39.65 3.25
179 180 1.451387 CGGGTCCTGCCAATGTACC 60.451 63.158 0.00 0.00 39.65 3.34
180 181 0.035820 TTCGGGTCCTGCCAATGTAC 60.036 55.000 0.00 0.00 39.65 2.90
181 182 0.035820 GTTCGGGTCCTGCCAATGTA 60.036 55.000 0.00 0.00 39.65 2.29
182 183 1.303317 GTTCGGGTCCTGCCAATGT 60.303 57.895 0.00 0.00 39.65 2.71
183 184 1.002134 AGTTCGGGTCCTGCCAATG 60.002 57.895 0.00 0.00 39.65 2.82
184 185 1.002134 CAGTTCGGGTCCTGCCAAT 60.002 57.895 0.00 0.00 39.65 3.16
185 186 1.990160 AACAGTTCGGGTCCTGCCAA 61.990 55.000 0.00 0.00 39.65 4.52
186 187 2.391724 GAACAGTTCGGGTCCTGCCA 62.392 60.000 0.00 0.00 39.65 4.92
187 188 1.671379 GAACAGTTCGGGTCCTGCC 60.671 63.158 0.00 0.00 31.76 4.85
188 189 1.671379 GGAACAGTTCGGGTCCTGC 60.671 63.158 7.22 0.00 31.76 4.85
189 190 1.752198 TGGAACAGTTCGGGTCCTG 59.248 57.895 7.22 0.00 34.82 3.86
190 191 4.306245 TGGAACAGTTCGGGTCCT 57.694 55.556 7.22 0.00 0.00 3.85
201 202 4.618460 GCAATAGAACGACTCTCTGGAACA 60.618 45.833 0.00 0.00 35.41 3.18
202 203 3.860536 GCAATAGAACGACTCTCTGGAAC 59.139 47.826 0.00 0.00 35.41 3.62
203 204 3.119101 GGCAATAGAACGACTCTCTGGAA 60.119 47.826 0.00 0.00 35.41 3.53
204 205 2.427453 GGCAATAGAACGACTCTCTGGA 59.573 50.000 0.00 0.00 35.41 3.86
205 206 2.428890 AGGCAATAGAACGACTCTCTGG 59.571 50.000 0.00 0.00 35.41 3.86
206 207 3.791973 AGGCAATAGAACGACTCTCTG 57.208 47.619 0.00 0.00 35.41 3.35
207 208 3.677424 GCAAGGCAATAGAACGACTCTCT 60.677 47.826 0.00 0.00 35.41 3.10
208 209 2.605366 GCAAGGCAATAGAACGACTCTC 59.395 50.000 0.00 0.00 35.41 3.20
209 210 2.028112 TGCAAGGCAATAGAACGACTCT 60.028 45.455 0.00 0.00 34.76 3.24
210 211 2.346803 TGCAAGGCAATAGAACGACTC 58.653 47.619 0.00 0.00 34.76 3.36
211 212 2.472695 TGCAAGGCAATAGAACGACT 57.527 45.000 0.00 0.00 34.76 4.18
222 223 6.992063 TTGAACTTAAAATTTTGCAAGGCA 57.008 29.167 13.76 9.53 36.47 4.75
223 224 7.218014 GTGTTTGAACTTAAAATTTTGCAAGGC 59.782 33.333 13.76 7.41 0.00 4.35
224 225 8.233190 TGTGTTTGAACTTAAAATTTTGCAAGG 58.767 29.630 13.76 0.00 0.00 3.61
225 226 9.771915 ATGTGTTTGAACTTAAAATTTTGCAAG 57.228 25.926 13.76 11.92 0.00 4.01
238 239 8.665685 GGAATATCTCGTAATGTGTTTGAACTT 58.334 33.333 0.00 0.00 0.00 2.66
239 240 7.280205 GGGAATATCTCGTAATGTGTTTGAACT 59.720 37.037 0.00 0.00 0.00 3.01
240 241 7.407337 GGGAATATCTCGTAATGTGTTTGAAC 58.593 38.462 0.00 0.00 0.00 3.18
241 242 6.256975 CGGGAATATCTCGTAATGTGTTTGAA 59.743 38.462 0.00 0.00 35.23 2.69
242 243 5.751509 CGGGAATATCTCGTAATGTGTTTGA 59.248 40.000 0.00 0.00 35.23 2.69
243 244 5.751509 TCGGGAATATCTCGTAATGTGTTTG 59.248 40.000 0.00 0.00 41.96 2.93
244 245 5.909477 TCGGGAATATCTCGTAATGTGTTT 58.091 37.500 0.00 0.00 41.96 2.83
245 246 5.524971 TCGGGAATATCTCGTAATGTGTT 57.475 39.130 0.00 0.00 41.96 3.32
246 247 5.524971 TTCGGGAATATCTCGTAATGTGT 57.475 39.130 0.00 0.00 41.96 3.72
247 248 6.838198 TTTTCGGGAATATCTCGTAATGTG 57.162 37.500 0.00 0.00 41.96 3.21
270 271 7.849804 AGCTCATATCTCGTAATGTGTTTTT 57.150 32.000 0.00 0.00 0.00 1.94
271 272 8.982685 CATAGCTCATATCTCGTAATGTGTTTT 58.017 33.333 0.00 0.00 0.00 2.43
272 273 8.360390 TCATAGCTCATATCTCGTAATGTGTTT 58.640 33.333 0.00 0.00 0.00 2.83
273 274 7.886338 TCATAGCTCATATCTCGTAATGTGTT 58.114 34.615 0.00 0.00 0.00 3.32
274 275 7.454260 TCATAGCTCATATCTCGTAATGTGT 57.546 36.000 0.00 0.00 0.00 3.72
275 276 8.748380 TTTCATAGCTCATATCTCGTAATGTG 57.252 34.615 0.00 0.00 0.00 3.21
276 277 9.764363 TTTTTCATAGCTCATATCTCGTAATGT 57.236 29.630 0.00 0.00 0.00 2.71
299 300 7.095523 GCACTATTCAATGCTGATTGTGTTTTT 60.096 33.333 0.00 0.00 40.09 1.94
300 301 6.366877 GCACTATTCAATGCTGATTGTGTTTT 59.633 34.615 0.00 0.00 40.09 2.43
301 302 5.865552 GCACTATTCAATGCTGATTGTGTTT 59.134 36.000 0.00 0.00 40.09 2.83
302 303 5.404946 GCACTATTCAATGCTGATTGTGTT 58.595 37.500 0.00 0.00 40.09 3.32
303 304 4.142315 GGCACTATTCAATGCTGATTGTGT 60.142 41.667 0.00 0.00 41.74 3.72
304 305 4.142337 TGGCACTATTCAATGCTGATTGTG 60.142 41.667 0.00 0.00 41.74 3.33
305 306 4.018490 TGGCACTATTCAATGCTGATTGT 58.982 39.130 0.00 0.00 41.74 2.71
306 307 4.642445 TGGCACTATTCAATGCTGATTG 57.358 40.909 0.00 0.00 41.74 2.67
307 308 5.047164 TGTTTGGCACTATTCAATGCTGATT 60.047 36.000 0.00 0.00 41.74 2.57
308 309 4.463539 TGTTTGGCACTATTCAATGCTGAT 59.536 37.500 0.00 0.00 41.74 2.90
309 310 3.825585 TGTTTGGCACTATTCAATGCTGA 59.174 39.130 0.00 0.00 41.74 4.26
310 311 4.171005 CTGTTTGGCACTATTCAATGCTG 58.829 43.478 0.00 0.00 41.74 4.41
311 312 3.828451 ACTGTTTGGCACTATTCAATGCT 59.172 39.130 0.00 0.00 41.74 3.79
312 313 4.178545 ACTGTTTGGCACTATTCAATGC 57.821 40.909 0.00 0.00 41.29 3.56
313 314 5.794945 CGTTACTGTTTGGCACTATTCAATG 59.205 40.000 0.00 0.00 0.00 2.82
314 315 5.472137 ACGTTACTGTTTGGCACTATTCAAT 59.528 36.000 0.00 0.00 0.00 2.57
315 316 4.817464 ACGTTACTGTTTGGCACTATTCAA 59.183 37.500 0.00 0.00 0.00 2.69
316 317 4.382291 ACGTTACTGTTTGGCACTATTCA 58.618 39.130 0.00 0.00 0.00 2.57
317 318 4.449743 TGACGTTACTGTTTGGCACTATTC 59.550 41.667 0.00 0.00 0.00 1.75
318 319 4.212636 GTGACGTTACTGTTTGGCACTATT 59.787 41.667 2.75 0.00 0.00 1.73
319 320 3.744426 GTGACGTTACTGTTTGGCACTAT 59.256 43.478 2.75 0.00 0.00 2.12
320 321 3.125316 GTGACGTTACTGTTTGGCACTA 58.875 45.455 2.75 0.00 0.00 2.74
321 322 1.937899 GTGACGTTACTGTTTGGCACT 59.062 47.619 2.75 0.00 0.00 4.40
322 323 1.937899 AGTGACGTTACTGTTTGGCAC 59.062 47.619 12.76 0.20 0.00 5.01
323 324 2.319136 AGTGACGTTACTGTTTGGCA 57.681 45.000 12.76 0.00 0.00 4.92
324 325 4.449743 TGAATAGTGACGTTACTGTTTGGC 59.550 41.667 22.06 10.79 33.02 4.52
325 326 6.721571 ATGAATAGTGACGTTACTGTTTGG 57.278 37.500 22.06 0.00 33.02 3.28
326 327 6.519761 GCAATGAATAGTGACGTTACTGTTTG 59.480 38.462 22.06 16.59 33.02 2.93
327 328 6.426937 AGCAATGAATAGTGACGTTACTGTTT 59.573 34.615 22.06 15.02 33.02 2.83
328 329 5.932303 AGCAATGAATAGTGACGTTACTGTT 59.068 36.000 22.06 20.92 35.15 3.16
329 330 5.348724 CAGCAATGAATAGTGACGTTACTGT 59.651 40.000 22.06 13.43 32.19 3.55
330 331 5.576774 TCAGCAATGAATAGTGACGTTACTG 59.423 40.000 22.06 6.28 31.51 2.74
331 332 5.720202 TCAGCAATGAATAGTGACGTTACT 58.280 37.500 17.71 17.71 34.71 2.24
332 333 6.403333 TTCAGCAATGAATAGTGACGTTAC 57.597 37.500 1.53 1.53 0.00 2.50
333 334 7.609760 AATTCAGCAATGAATAGTGACGTTA 57.390 32.000 4.04 0.00 37.52 3.18
334 335 6.500684 AATTCAGCAATGAATAGTGACGTT 57.499 33.333 4.04 0.00 37.52 3.99
335 336 6.072508 ACAAATTCAGCAATGAATAGTGACGT 60.073 34.615 15.81 0.00 37.52 4.34
336 337 6.317088 ACAAATTCAGCAATGAATAGTGACG 58.683 36.000 15.81 0.00 37.52 4.35
337 338 7.533426 AGACAAATTCAGCAATGAATAGTGAC 58.467 34.615 15.81 11.80 37.52 3.67
338 339 7.692460 AGACAAATTCAGCAATGAATAGTGA 57.308 32.000 15.81 0.00 37.52 3.41
339 340 8.752766 AAAGACAAATTCAGCAATGAATAGTG 57.247 30.769 11.39 11.00 37.52 2.74
340 341 9.768662 AAAAAGACAAATTCAGCAATGAATAGT 57.231 25.926 4.04 6.36 37.52 2.12
363 364 2.235016 ACGGGATGCAAGCTGTAAAAA 58.765 42.857 0.00 0.00 0.00 1.94
364 365 1.904287 ACGGGATGCAAGCTGTAAAA 58.096 45.000 0.00 0.00 0.00 1.52
365 366 2.772077 TACGGGATGCAAGCTGTAAA 57.228 45.000 0.00 0.00 0.00 2.01
366 367 2.772077 TTACGGGATGCAAGCTGTAA 57.228 45.000 0.00 0.00 0.00 2.41
367 368 2.093181 ACATTACGGGATGCAAGCTGTA 60.093 45.455 0.00 0.00 0.00 2.74
368 369 1.340017 ACATTACGGGATGCAAGCTGT 60.340 47.619 0.00 0.00 0.00 4.40
369 370 1.382522 ACATTACGGGATGCAAGCTG 58.617 50.000 0.00 0.00 0.00 4.24
370 371 3.492102 ATACATTACGGGATGCAAGCT 57.508 42.857 0.00 0.00 0.00 3.74
371 372 4.568152 AAATACATTACGGGATGCAAGC 57.432 40.909 0.00 0.00 0.00 4.01
372 373 7.703328 AGTTAAAATACATTACGGGATGCAAG 58.297 34.615 0.00 0.00 0.00 4.01
373 374 7.633193 AGTTAAAATACATTACGGGATGCAA 57.367 32.000 0.00 0.00 0.00 4.08
374 375 7.337184 TCAAGTTAAAATACATTACGGGATGCA 59.663 33.333 0.00 0.00 0.00 3.96
375 376 7.699566 TCAAGTTAAAATACATTACGGGATGC 58.300 34.615 0.78 0.00 0.00 3.91
404 405 9.716531 GAGGATGATATTCTATTGTCATGTGAA 57.283 33.333 0.00 0.00 31.86 3.18
405 406 9.097946 AGAGGATGATATTCTATTGTCATGTGA 57.902 33.333 0.00 0.00 31.86 3.58
406 407 9.722184 AAGAGGATGATATTCTATTGTCATGTG 57.278 33.333 0.00 0.00 31.86 3.21
415 416 9.566331 TGGGATGTTAAGAGGATGATATTCTAT 57.434 33.333 0.00 0.00 0.00 1.98
416 417 8.816894 GTGGGATGTTAAGAGGATGATATTCTA 58.183 37.037 0.00 0.00 0.00 2.10
417 418 7.293299 TGTGGGATGTTAAGAGGATGATATTCT 59.707 37.037 0.00 0.00 0.00 2.40
418 419 7.453393 TGTGGGATGTTAAGAGGATGATATTC 58.547 38.462 0.00 0.00 0.00 1.75
419 420 7.392766 TGTGGGATGTTAAGAGGATGATATT 57.607 36.000 0.00 0.00 0.00 1.28
420 421 7.392766 TTGTGGGATGTTAAGAGGATGATAT 57.607 36.000 0.00 0.00 0.00 1.63
421 422 6.823286 TTGTGGGATGTTAAGAGGATGATA 57.177 37.500 0.00 0.00 0.00 2.15
422 423 5.715439 TTGTGGGATGTTAAGAGGATGAT 57.285 39.130 0.00 0.00 0.00 2.45
423 424 5.715439 ATTGTGGGATGTTAAGAGGATGA 57.285 39.130 0.00 0.00 0.00 2.92
424 425 6.780457 AAATTGTGGGATGTTAAGAGGATG 57.220 37.500 0.00 0.00 0.00 3.51
425 426 7.797121 AAAAATTGTGGGATGTTAAGAGGAT 57.203 32.000 0.00 0.00 0.00 3.24
447 448 7.807433 CACATCACAGGACGATATTTTGAAAAA 59.193 33.333 0.00 0.00 0.00 1.94
448 449 7.040755 ACACATCACAGGACGATATTTTGAAAA 60.041 33.333 0.00 0.00 0.00 2.29
449 450 6.429692 ACACATCACAGGACGATATTTTGAAA 59.570 34.615 0.00 0.00 0.00 2.69
450 451 5.937540 ACACATCACAGGACGATATTTTGAA 59.062 36.000 0.00 0.00 0.00 2.69
451 452 5.487433 ACACATCACAGGACGATATTTTGA 58.513 37.500 0.00 0.00 0.00 2.69
452 453 5.801350 ACACATCACAGGACGATATTTTG 57.199 39.130 0.00 0.00 0.00 2.44
453 454 6.817765 AAACACATCACAGGACGATATTTT 57.182 33.333 0.00 0.00 0.00 1.82
454 455 6.817765 AAAACACATCACAGGACGATATTT 57.182 33.333 0.00 0.00 0.00 1.40
455 456 7.606456 AGTTAAAACACATCACAGGACGATATT 59.394 33.333 0.00 0.00 0.00 1.28
456 457 7.103641 AGTTAAAACACATCACAGGACGATAT 58.896 34.615 0.00 0.00 0.00 1.63
457 458 6.460781 AGTTAAAACACATCACAGGACGATA 58.539 36.000 0.00 0.00 0.00 2.92
458 459 5.305585 AGTTAAAACACATCACAGGACGAT 58.694 37.500 0.00 0.00 0.00 3.73
459 460 4.699637 AGTTAAAACACATCACAGGACGA 58.300 39.130 0.00 0.00 0.00 4.20
460 461 5.204833 CAAGTTAAAACACATCACAGGACG 58.795 41.667 0.00 0.00 0.00 4.79
461 462 6.131544 ACAAGTTAAAACACATCACAGGAC 57.868 37.500 0.00 0.00 0.00 3.85
462 463 6.767524 AACAAGTTAAAACACATCACAGGA 57.232 33.333 0.00 0.00 0.00 3.86
463 464 7.114811 GCATAACAAGTTAAAACACATCACAGG 59.885 37.037 0.00 0.00 0.00 4.00
464 465 7.114811 GGCATAACAAGTTAAAACACATCACAG 59.885 37.037 0.00 0.00 0.00 3.66
465 466 6.920758 GGCATAACAAGTTAAAACACATCACA 59.079 34.615 0.00 0.00 0.00 3.58
466 467 6.920758 TGGCATAACAAGTTAAAACACATCAC 59.079 34.615 0.00 0.00 0.00 3.06
467 468 7.043961 TGGCATAACAAGTTAAAACACATCA 57.956 32.000 0.00 0.00 0.00 3.07
468 469 9.072294 GTATGGCATAACAAGTTAAAACACATC 57.928 33.333 9.14 0.00 0.00 3.06
469 470 8.802267 AGTATGGCATAACAAGTTAAAACACAT 58.198 29.630 9.14 1.92 0.00 3.21
470 471 8.172352 AGTATGGCATAACAAGTTAAAACACA 57.828 30.769 9.14 0.00 0.00 3.72
471 472 9.550811 GTAGTATGGCATAACAAGTTAAAACAC 57.449 33.333 9.14 0.00 0.00 3.32
472 473 9.509956 AGTAGTATGGCATAACAAGTTAAAACA 57.490 29.630 9.14 0.00 0.00 2.83
478 479 9.198475 ACTAGTAGTAGTATGGCATAACAAGTT 57.802 33.333 9.14 0.00 37.76 2.66
479 480 8.763984 ACTAGTAGTAGTATGGCATAACAAGT 57.236 34.615 9.14 5.16 37.76 3.16
498 499 9.745018 AAGACACCAATTACACTACTACTAGTA 57.255 33.333 1.89 1.89 31.46 1.82
499 500 8.647256 AAGACACCAATTACACTACTACTAGT 57.353 34.615 0.00 0.00 33.01 2.57
531 532 8.312896 TGAAACTTTGTTGTACGCTGATTATA 57.687 30.769 0.00 0.00 0.00 0.98
565 566 4.998051 TGCTTGAGGAAGGGATACTTTTT 58.002 39.130 0.00 0.00 40.21 1.94
570 571 3.636153 AGTTGCTTGAGGAAGGGATAC 57.364 47.619 0.00 0.00 0.00 2.24
596 599 4.094442 CGAGGTCATTTAGGCTTTGGTAAC 59.906 45.833 0.00 0.00 0.00 2.50
599 602 2.711542 CGAGGTCATTTAGGCTTTGGT 58.288 47.619 0.00 0.00 0.00 3.67
695 698 6.698766 GCAATATGTAATGAGGGAAAAGCAAG 59.301 38.462 0.00 0.00 0.00 4.01
798 810 3.560068 CACTAAACTGGTTCAGTGGTGTC 59.440 47.826 8.47 0.00 44.62 3.67
799 811 3.054655 ACACTAAACTGGTTCAGTGGTGT 60.055 43.478 17.71 18.92 44.62 4.16
836 848 3.307059 GCTAACTGATTCAGTGGAGTGGT 60.307 47.826 19.65 5.23 44.62 4.16
863 875 7.061905 CACCGGTATTTATATAGAAAGACTGCG 59.938 40.741 17.17 12.55 36.17 5.18
864 876 7.148623 GCACCGGTATTTATATAGAAAGACTGC 60.149 40.741 17.17 14.36 36.17 4.40
866 878 7.234988 AGGCACCGGTATTTATATAGAAAGACT 59.765 37.037 6.87 0.00 32.39 3.24
918 930 0.802607 CCTAGCTTCTTGTCGCGGTC 60.803 60.000 6.13 0.00 0.00 4.79
933 945 4.514401 ACGAACTAAATTTCCTGCCCTAG 58.486 43.478 0.00 0.00 0.00 3.02
957 969 9.349713 TCTGCTTTGATTTTAGTTTCTTCCTAA 57.650 29.630 0.00 0.00 0.00 2.69
961 973 9.122613 GTGATCTGCTTTGATTTTAGTTTCTTC 57.877 33.333 0.00 0.00 0.00 2.87
970 982 6.444633 CAGAGTTGTGATCTGCTTTGATTTT 58.555 36.000 0.00 0.00 37.93 1.82
972 984 5.624344 CAGAGTTGTGATCTGCTTTGATT 57.376 39.130 0.00 0.00 37.93 2.57
980 992 1.804601 TGCTGCAGAGTTGTGATCTG 58.195 50.000 20.43 0.00 45.71 2.90
981 993 2.556144 TTGCTGCAGAGTTGTGATCT 57.444 45.000 20.43 0.00 0.00 2.75
982 994 2.159421 CCATTGCTGCAGAGTTGTGATC 60.159 50.000 20.43 0.00 0.00 2.92
983 995 1.816835 CCATTGCTGCAGAGTTGTGAT 59.183 47.619 20.43 0.00 0.00 3.06
984 996 1.241165 CCATTGCTGCAGAGTTGTGA 58.759 50.000 20.43 0.00 0.00 3.58
985 997 0.388134 GCCATTGCTGCAGAGTTGTG 60.388 55.000 20.43 7.89 33.53 3.33
986 998 1.859427 CGCCATTGCTGCAGAGTTGT 61.859 55.000 20.43 0.00 34.43 3.32
987 999 1.154093 CGCCATTGCTGCAGAGTTG 60.154 57.895 20.43 10.45 34.43 3.16
1049 1061 1.583495 CCGGAAGAAAAAGGGGCGAC 61.583 60.000 0.00 0.00 0.00 5.19
1052 1064 0.323087 TAGCCGGAAGAAAAAGGGGC 60.323 55.000 5.05 0.00 40.80 5.80
1125 1139 0.247576 CACGTCGAGTAGTACCTGCG 60.248 60.000 0.00 0.00 0.00 5.18
1380 1395 1.533469 CCGGTGGAGTCGAAGAAGGT 61.533 60.000 0.00 0.00 39.69 3.50
1445 1460 3.039588 GTGGCCGTCGCGAAGAAA 61.040 61.111 23.78 5.44 35.02 2.52
1751 1766 3.365666 CGAGTTCATCTTTGCACTGCATT 60.366 43.478 4.10 0.00 38.76 3.56
1776 1791 8.825774 TGTGTAAATCCTGCTCCATACATATAT 58.174 33.333 0.00 0.00 0.00 0.86
1782 1797 6.543831 AGAATTGTGTAAATCCTGCTCCATAC 59.456 38.462 0.00 0.00 0.00 2.39
1990 2046 8.877864 TTGGATGTAATCTGGTTGTAATTTCT 57.122 30.769 0.00 0.00 44.71 2.52
2014 2070 0.670162 ATGCAGCTGCGTGTCTTTTT 59.330 45.000 31.99 5.92 45.83 1.94
2037 2097 1.896660 GTTGCGTCCCTCCTTTGCA 60.897 57.895 0.00 0.00 0.00 4.08
2054 2114 0.108329 CGCGGAGGACATTAACCAGT 60.108 55.000 0.00 0.00 0.00 4.00
2055 2115 0.174845 TCGCGGAGGACATTAACCAG 59.825 55.000 6.13 0.00 0.00 4.00
2072 2132 2.654749 TGAGGTTGCATACTCTGTCG 57.345 50.000 16.26 0.00 34.84 4.35
2077 2137 6.341316 TCATCTTACTTGAGGTTGCATACTC 58.659 40.000 10.35 10.35 0.00 2.59
2094 2154 6.669591 TCTTCAATGACTTCTCCCTCATCTTA 59.330 38.462 0.00 0.00 0.00 2.10
2096 2156 5.028802 TCTTCAATGACTTCTCCCTCATCT 58.971 41.667 0.00 0.00 0.00 2.90
2113 2173 4.487019 TGTGTTATCGTGCGTATCTTCAA 58.513 39.130 0.00 0.00 0.00 2.69
2127 2187 5.790988 CGCTGTCGATCTAGTATGTGTTATC 59.209 44.000 0.00 0.00 38.10 1.75
2129 2189 4.554134 GCGCTGTCGATCTAGTATGTGTTA 60.554 45.833 0.00 0.00 38.10 2.41
2277 2338 2.561419 TCGTTCTCTTGGACCAGGTAAG 59.439 50.000 3.17 0.00 0.00 2.34
2281 2342 1.618837 TCTTCGTTCTCTTGGACCAGG 59.381 52.381 0.00 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.