Multiple sequence alignment - TraesCS7B01G324400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7B01G324400 | chr7B | 100.000 | 3622 | 0 | 0 | 270 | 3891 | 577199784 | 577203405 | 0.000000e+00 | 6689.0 |
1 | TraesCS7B01G324400 | chr7B | 86.096 | 712 | 81 | 9 | 1773 | 2475 | 509736882 | 509736180 | 0.000000e+00 | 750.0 |
2 | TraesCS7B01G324400 | chr7B | 85.232 | 711 | 85 | 11 | 1773 | 2475 | 517933601 | 517932903 | 0.000000e+00 | 713.0 |
3 | TraesCS7B01G324400 | chr7B | 82.962 | 628 | 96 | 8 | 2658 | 3282 | 517932543 | 517931924 | 1.220000e-154 | 556.0 |
4 | TraesCS7B01G324400 | chr7B | 100.000 | 187 | 0 | 0 | 1 | 187 | 577199515 | 577199701 | 2.880000e-91 | 346.0 |
5 | TraesCS7B01G324400 | chr7B | 99.465 | 187 | 1 | 0 | 1 | 187 | 577199834 | 577200020 | 1.340000e-89 | 340.0 |
6 | TraesCS7B01G324400 | chr7B | 83.895 | 267 | 34 | 6 | 3377 | 3637 | 337574731 | 337574994 | 3.000000e-61 | 246.0 |
7 | TraesCS7B01G324400 | chr7B | 83.333 | 126 | 11 | 2 | 1641 | 1757 | 517933884 | 517933760 | 1.480000e-19 | 108.0 |
8 | TraesCS7B01G324400 | chr7B | 81.443 | 97 | 18 | 0 | 1387 | 1483 | 613185978 | 613186074 | 3.220000e-11 | 80.5 |
9 | TraesCS7B01G324400 | chr7D | 90.285 | 1894 | 163 | 15 | 1491 | 3371 | 535510426 | 535512311 | 0.000000e+00 | 2459.0 |
10 | TraesCS7B01G324400 | chr7D | 88.622 | 624 | 66 | 3 | 875 | 1493 | 535509744 | 535510367 | 0.000000e+00 | 754.0 |
11 | TraesCS7B01G324400 | chr7D | 85.870 | 644 | 81 | 7 | 1832 | 2468 | 489302118 | 489301478 | 0.000000e+00 | 676.0 |
12 | TraesCS7B01G324400 | chr7D | 88.847 | 529 | 33 | 10 | 3377 | 3891 | 535512348 | 535512864 | 9.180000e-176 | 627.0 |
13 | TraesCS7B01G324400 | chr7D | 83.546 | 626 | 95 | 5 | 2658 | 3282 | 489301111 | 489300493 | 2.610000e-161 | 579.0 |
14 | TraesCS7B01G324400 | chr7D | 87.755 | 441 | 44 | 8 | 2038 | 2470 | 484071647 | 484071209 | 1.250000e-139 | 507.0 |
15 | TraesCS7B01G324400 | chr7D | 83.740 | 246 | 35 | 3 | 3397 | 3637 | 119741249 | 119741494 | 1.090000e-55 | 228.0 |
16 | TraesCS7B01G324400 | chr7D | 82.482 | 137 | 14 | 4 | 1641 | 1768 | 484072169 | 484072034 | 1.140000e-20 | 111.0 |
17 | TraesCS7B01G324400 | chr7D | 83.333 | 126 | 11 | 3 | 1641 | 1757 | 489311035 | 489310911 | 1.480000e-19 | 108.0 |
18 | TraesCS7B01G324400 | chr7D | 81.651 | 109 | 19 | 1 | 1385 | 1493 | 605228921 | 605228814 | 5.350000e-14 | 89.8 |
19 | TraesCS7B01G324400 | chr7A | 86.516 | 1817 | 218 | 13 | 1482 | 3282 | 616444351 | 616442546 | 0.000000e+00 | 1973.0 |
20 | TraesCS7B01G324400 | chr7A | 86.304 | 1818 | 219 | 18 | 1482 | 3282 | 615785495 | 615787299 | 0.000000e+00 | 1951.0 |
21 | TraesCS7B01G324400 | chr7A | 86.448 | 701 | 64 | 17 | 1779 | 2470 | 551542877 | 551542199 | 0.000000e+00 | 739.0 |
22 | TraesCS7B01G324400 | chr7A | 83.573 | 627 | 92 | 10 | 875 | 1498 | 616445017 | 616444399 | 9.370000e-161 | 577.0 |
23 | TraesCS7B01G324400 | chr7A | 82.958 | 622 | 101 | 5 | 875 | 1493 | 615784827 | 615785446 | 1.220000e-154 | 556.0 |
24 | TraesCS7B01G324400 | chr7A | 84.956 | 452 | 35 | 11 | 3377 | 3814 | 618244144 | 618243712 | 9.990000e-116 | 427.0 |
25 | TraesCS7B01G324400 | chr7A | 76.211 | 454 | 93 | 11 | 940 | 1386 | 591023112 | 591023557 | 3.910000e-55 | 226.0 |
26 | TraesCS7B01G324400 | chr7A | 84.783 | 92 | 12 | 2 | 1678 | 1768 | 551543131 | 551543041 | 1.490000e-14 | 91.6 |
27 | TraesCS7B01G324400 | chr7A | 94.444 | 54 | 3 | 0 | 3302 | 3355 | 618244243 | 618244190 | 2.490000e-12 | 84.2 |
28 | TraesCS7B01G324400 | chr2B | 85.392 | 1595 | 208 | 18 | 1678 | 3258 | 142295828 | 142297411 | 0.000000e+00 | 1631.0 |
29 | TraesCS7B01G324400 | chr2B | 98.339 | 602 | 10 | 0 | 270 | 871 | 708701634 | 708702235 | 0.000000e+00 | 1057.0 |
30 | TraesCS7B01G324400 | chr2B | 98.017 | 605 | 11 | 1 | 270 | 874 | 699768748 | 699769351 | 0.000000e+00 | 1050.0 |
31 | TraesCS7B01G324400 | chr2B | 99.465 | 187 | 1 | 0 | 1 | 187 | 699768798 | 699768984 | 1.340000e-89 | 340.0 |
32 | TraesCS7B01G324400 | chr2B | 85.882 | 255 | 31 | 3 | 3385 | 3635 | 601177839 | 601178092 | 2.300000e-67 | 267.0 |
33 | TraesCS7B01G324400 | chr2D | 85.725 | 1366 | 157 | 16 | 1482 | 2826 | 89468421 | 89469769 | 0.000000e+00 | 1408.0 |
34 | TraesCS7B01G324400 | chr2D | 86.100 | 259 | 32 | 2 | 3377 | 3632 | 547154485 | 547154742 | 3.830000e-70 | 276.0 |
35 | TraesCS7B01G324400 | chr2D | 83.969 | 262 | 38 | 2 | 3377 | 3635 | 511918801 | 511919061 | 8.350000e-62 | 248.0 |
36 | TraesCS7B01G324400 | chr2D | 84.581 | 227 | 33 | 2 | 3371 | 3596 | 431928512 | 431928737 | 1.410000e-54 | 224.0 |
37 | TraesCS7B01G324400 | chr2D | 82.464 | 211 | 33 | 3 | 875 | 1083 | 89439658 | 89439866 | 8.590000e-42 | 182.0 |
38 | TraesCS7B01G324400 | chr5B | 98.680 | 606 | 8 | 0 | 270 | 875 | 423217362 | 423216757 | 0.000000e+00 | 1075.0 |
39 | TraesCS7B01G324400 | chr5B | 99.465 | 187 | 1 | 0 | 1 | 187 | 336802940 | 336802754 | 1.340000e-89 | 340.0 |
40 | TraesCS7B01G324400 | chr5B | 99.465 | 187 | 1 | 0 | 1 | 187 | 423217312 | 423217126 | 1.340000e-89 | 340.0 |
41 | TraesCS7B01G324400 | chr5B | 99.465 | 187 | 1 | 0 | 1 | 187 | 524587245 | 524587431 | 1.340000e-89 | 340.0 |
42 | TraesCS7B01G324400 | chr5B | 85.973 | 221 | 31 | 0 | 3376 | 3596 | 696724833 | 696725053 | 1.810000e-58 | 237.0 |
43 | TraesCS7B01G324400 | chr1B | 98.512 | 605 | 9 | 0 | 270 | 874 | 686834328 | 686833724 | 0.000000e+00 | 1068.0 |
44 | TraesCS7B01G324400 | chr1B | 97.690 | 606 | 13 | 1 | 270 | 874 | 659733663 | 659733058 | 0.000000e+00 | 1040.0 |
45 | TraesCS7B01G324400 | chr1B | 97.360 | 606 | 16 | 0 | 270 | 875 | 326013795 | 326013190 | 0.000000e+00 | 1031.0 |
46 | TraesCS7B01G324400 | chr1B | 99.465 | 187 | 1 | 0 | 1 | 187 | 686834278 | 686834092 | 1.340000e-89 | 340.0 |
47 | TraesCS7B01G324400 | chr2A | 98.039 | 612 | 11 | 1 | 270 | 880 | 470629106 | 470628495 | 0.000000e+00 | 1062.0 |
48 | TraesCS7B01G324400 | chr5A | 98.182 | 605 | 11 | 0 | 270 | 874 | 617983191 | 617982587 | 0.000000e+00 | 1057.0 |
49 | TraesCS7B01G324400 | chr5A | 84.993 | 753 | 103 | 10 | 2509 | 3258 | 531401657 | 531402402 | 0.000000e+00 | 756.0 |
50 | TraesCS7B01G324400 | chr5A | 99.465 | 187 | 1 | 0 | 1 | 187 | 617983141 | 617982955 | 1.340000e-89 | 340.0 |
51 | TraesCS7B01G324400 | chr6B | 97.855 | 606 | 13 | 0 | 270 | 875 | 439446723 | 439447328 | 0.000000e+00 | 1048.0 |
52 | TraesCS7B01G324400 | chr6B | 85.086 | 818 | 104 | 14 | 2469 | 3282 | 649740125 | 649739322 | 0.000000e+00 | 819.0 |
53 | TraesCS7B01G324400 | chr6B | 85.525 | 753 | 99 | 9 | 2509 | 3258 | 695810231 | 695809486 | 0.000000e+00 | 778.0 |
54 | TraesCS7B01G324400 | chr6B | 82.035 | 629 | 98 | 11 | 2658 | 3281 | 121431948 | 121431330 | 4.460000e-144 | 521.0 |
55 | TraesCS7B01G324400 | chr6B | 99.465 | 187 | 1 | 0 | 1 | 187 | 439446773 | 439446959 | 1.340000e-89 | 340.0 |
56 | TraesCS7B01G324400 | chr6B | 75.191 | 524 | 113 | 13 | 875 | 1387 | 649834569 | 649834052 | 8.410000e-57 | 231.0 |
57 | TraesCS7B01G324400 | chr6D | 85.732 | 813 | 104 | 9 | 2473 | 3282 | 430751281 | 430750478 | 0.000000e+00 | 848.0 |
58 | TraesCS7B01G324400 | chr6D | 85.695 | 755 | 94 | 13 | 2509 | 3258 | 457256361 | 457255616 | 0.000000e+00 | 784.0 |
59 | TraesCS7B01G324400 | chr6D | 82.669 | 727 | 84 | 26 | 1771 | 2475 | 430845932 | 430845226 | 1.200000e-169 | 606.0 |
60 | TraesCS7B01G324400 | chr6D | 83.914 | 603 | 89 | 4 | 2658 | 3258 | 430844842 | 430844246 | 1.570000e-158 | 569.0 |
61 | TraesCS7B01G324400 | chr6D | 82.667 | 600 | 90 | 11 | 2660 | 3253 | 50180549 | 50181140 | 1.600000e-143 | 520.0 |
62 | TraesCS7B01G324400 | chr6D | 76.573 | 572 | 91 | 26 | 926 | 1493 | 430752065 | 430751533 | 1.380000e-69 | 274.0 |
63 | TraesCS7B01G324400 | chr6D | 75.095 | 526 | 110 | 14 | 875 | 1387 | 430847601 | 430847084 | 3.910000e-55 | 226.0 |
64 | TraesCS7B01G324400 | chr6D | 82.609 | 207 | 34 | 2 | 2509 | 2714 | 50180341 | 50180546 | 8.590000e-42 | 182.0 |
65 | TraesCS7B01G324400 | chr6D | 82.000 | 100 | 17 | 1 | 1385 | 1484 | 97304702 | 97304800 | 2.490000e-12 | 84.2 |
66 | TraesCS7B01G324400 | chr6A | 85.259 | 753 | 101 | 9 | 2509 | 3258 | 604192813 | 604192068 | 0.000000e+00 | 767.0 |
67 | TraesCS7B01G324400 | chr6A | 85.075 | 603 | 88 | 2 | 2658 | 3258 | 577722570 | 577721968 | 7.150000e-172 | 614.0 |
68 | TraesCS7B01G324400 | chr6A | 80.952 | 630 | 104 | 13 | 2658 | 3281 | 64907704 | 64907085 | 5.850000e-133 | 484.0 |
69 | TraesCS7B01G324400 | chr6A | 99.465 | 187 | 1 | 0 | 1 | 187 | 157648258 | 157648072 | 1.340000e-89 | 340.0 |
70 | TraesCS7B01G324400 | chr6A | 84.426 | 244 | 35 | 2 | 3387 | 3627 | 503604102 | 503604345 | 1.810000e-58 | 237.0 |
71 | TraesCS7B01G324400 | chr6A | 83.607 | 244 | 37 | 2 | 3387 | 3627 | 503525376 | 503525619 | 3.910000e-55 | 226.0 |
72 | TraesCS7B01G324400 | chr6A | 83.333 | 246 | 37 | 3 | 3390 | 3632 | 503487899 | 503488143 | 1.410000e-54 | 224.0 |
73 | TraesCS7B01G324400 | chr4A | 84.711 | 242 | 34 | 1 | 3389 | 3627 | 685343447 | 685343688 | 5.020000e-59 | 239.0 |
74 | TraesCS7B01G324400 | chr4D | 84.711 | 242 | 32 | 4 | 3395 | 3632 | 352290332 | 352290092 | 1.810000e-58 | 237.0 |
75 | TraesCS7B01G324400 | chr4D | 81.328 | 241 | 37 | 4 | 3390 | 3627 | 16726510 | 16726745 | 5.130000e-44 | 189.0 |
76 | TraesCS7B01G324400 | chr4D | 83.575 | 207 | 22 | 1 | 3390 | 3596 | 16671457 | 16671651 | 2.390000e-42 | 183.0 |
77 | TraesCS7B01G324400 | chr4D | 80.583 | 103 | 19 | 1 | 1382 | 1484 | 488804235 | 488804134 | 1.160000e-10 | 78.7 |
78 | TraesCS7B01G324400 | chr4D | 94.286 | 35 | 1 | 1 | 3404 | 3438 | 40409516 | 40409549 | 7.000000e-03 | 52.8 |
79 | TraesCS7B01G324400 | chr3B | 83.794 | 253 | 36 | 3 | 3389 | 3637 | 492571798 | 492572049 | 6.500000e-58 | 235.0 |
80 | TraesCS7B01G324400 | chr3B | 84.211 | 247 | 31 | 5 | 3390 | 3631 | 652480951 | 652481194 | 2.340000e-57 | 233.0 |
81 | TraesCS7B01G324400 | chr3D | 82.812 | 256 | 39 | 3 | 3377 | 3631 | 490300111 | 490300362 | 1.410000e-54 | 224.0 |
82 | TraesCS7B01G324400 | chr3D | 80.800 | 250 | 40 | 4 | 3388 | 3631 | 171131533 | 171131286 | 5.130000e-44 | 189.0 |
83 | TraesCS7B01G324400 | chr1A | 88.462 | 182 | 21 | 0 | 3389 | 3570 | 387816963 | 387817144 | 1.820000e-53 | 220.0 |
84 | TraesCS7B01G324400 | chr1D | 86.667 | 195 | 24 | 2 | 3377 | 3570 | 308448602 | 308448795 | 8.470000e-52 | 215.0 |
85 | TraesCS7B01G324400 | chr1D | 83.957 | 187 | 27 | 3 | 3389 | 3573 | 291116165 | 291116350 | 4.000000e-40 | 176.0 |
86 | TraesCS7B01G324400 | chr5D | 79.104 | 268 | 30 | 12 | 3389 | 3631 | 67346464 | 67346730 | 1.120000e-35 | 161.0 |
87 | TraesCS7B01G324400 | chr5D | 83.465 | 127 | 19 | 2 | 3377 | 3502 | 448198823 | 448198948 | 2.460000e-22 | 117.0 |
88 | TraesCS7B01G324400 | chr5D | 80.531 | 113 | 15 | 6 | 1385 | 1493 | 84326551 | 84326660 | 3.220000e-11 | 80.5 |
89 | TraesCS7B01G324400 | chr4B | 82.171 | 129 | 22 | 1 | 3395 | 3523 | 656897741 | 656897614 | 4.110000e-20 | 110.0 |
90 | TraesCS7B01G324400 | chr4B | 85.938 | 64 | 7 | 2 | 3404 | 3466 | 58974986 | 58975048 | 2.510000e-07 | 67.6 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7B01G324400 | chr7B | 577199515 | 577203405 | 3890 | False | 2458.333333 | 6689 | 99.821667 | 1 | 3891 | 3 | chr7B.!!$F3 | 3890 |
1 | TraesCS7B01G324400 | chr7B | 509736180 | 509736882 | 702 | True | 750.000000 | 750 | 86.096000 | 1773 | 2475 | 1 | chr7B.!!$R1 | 702 |
2 | TraesCS7B01G324400 | chr7B | 517931924 | 517933884 | 1960 | True | 459.000000 | 713 | 83.842333 | 1641 | 3282 | 3 | chr7B.!!$R2 | 1641 |
3 | TraesCS7B01G324400 | chr7D | 535509744 | 535512864 | 3120 | False | 1280.000000 | 2459 | 89.251333 | 875 | 3891 | 3 | chr7D.!!$F2 | 3016 |
4 | TraesCS7B01G324400 | chr7D | 489300493 | 489302118 | 1625 | True | 627.500000 | 676 | 84.708000 | 1832 | 3282 | 2 | chr7D.!!$R4 | 1450 |
5 | TraesCS7B01G324400 | chr7D | 484071209 | 484072169 | 960 | True | 309.000000 | 507 | 85.118500 | 1641 | 2470 | 2 | chr7D.!!$R3 | 829 |
6 | TraesCS7B01G324400 | chr7A | 616442546 | 616445017 | 2471 | True | 1275.000000 | 1973 | 85.044500 | 875 | 3282 | 2 | chr7A.!!$R2 | 2407 |
7 | TraesCS7B01G324400 | chr7A | 615784827 | 615787299 | 2472 | False | 1253.500000 | 1951 | 84.631000 | 875 | 3282 | 2 | chr7A.!!$F2 | 2407 |
8 | TraesCS7B01G324400 | chr7A | 551542199 | 551543131 | 932 | True | 415.300000 | 739 | 85.615500 | 1678 | 2470 | 2 | chr7A.!!$R1 | 792 |
9 | TraesCS7B01G324400 | chr7A | 618243712 | 618244243 | 531 | True | 255.600000 | 427 | 89.700000 | 3302 | 3814 | 2 | chr7A.!!$R3 | 512 |
10 | TraesCS7B01G324400 | chr2B | 142295828 | 142297411 | 1583 | False | 1631.000000 | 1631 | 85.392000 | 1678 | 3258 | 1 | chr2B.!!$F1 | 1580 |
11 | TraesCS7B01G324400 | chr2B | 708701634 | 708702235 | 601 | False | 1057.000000 | 1057 | 98.339000 | 270 | 871 | 1 | chr2B.!!$F3 | 601 |
12 | TraesCS7B01G324400 | chr2B | 699768748 | 699769351 | 603 | False | 695.000000 | 1050 | 98.741000 | 1 | 874 | 2 | chr2B.!!$F4 | 873 |
13 | TraesCS7B01G324400 | chr2D | 89468421 | 89469769 | 1348 | False | 1408.000000 | 1408 | 85.725000 | 1482 | 2826 | 1 | chr2D.!!$F2 | 1344 |
14 | TraesCS7B01G324400 | chr5B | 423216757 | 423217362 | 605 | True | 707.500000 | 1075 | 99.072500 | 1 | 875 | 2 | chr5B.!!$R2 | 874 |
15 | TraesCS7B01G324400 | chr1B | 659733058 | 659733663 | 605 | True | 1040.000000 | 1040 | 97.690000 | 270 | 874 | 1 | chr1B.!!$R2 | 604 |
16 | TraesCS7B01G324400 | chr1B | 326013190 | 326013795 | 605 | True | 1031.000000 | 1031 | 97.360000 | 270 | 875 | 1 | chr1B.!!$R1 | 605 |
17 | TraesCS7B01G324400 | chr1B | 686833724 | 686834328 | 604 | True | 704.000000 | 1068 | 98.988500 | 1 | 874 | 2 | chr1B.!!$R3 | 873 |
18 | TraesCS7B01G324400 | chr2A | 470628495 | 470629106 | 611 | True | 1062.000000 | 1062 | 98.039000 | 270 | 880 | 1 | chr2A.!!$R1 | 610 |
19 | TraesCS7B01G324400 | chr5A | 531401657 | 531402402 | 745 | False | 756.000000 | 756 | 84.993000 | 2509 | 3258 | 1 | chr5A.!!$F1 | 749 |
20 | TraesCS7B01G324400 | chr5A | 617982587 | 617983191 | 604 | True | 698.500000 | 1057 | 98.823500 | 1 | 874 | 2 | chr5A.!!$R1 | 873 |
21 | TraesCS7B01G324400 | chr6B | 649739322 | 649740125 | 803 | True | 819.000000 | 819 | 85.086000 | 2469 | 3282 | 1 | chr6B.!!$R2 | 813 |
22 | TraesCS7B01G324400 | chr6B | 695809486 | 695810231 | 745 | True | 778.000000 | 778 | 85.525000 | 2509 | 3258 | 1 | chr6B.!!$R4 | 749 |
23 | TraesCS7B01G324400 | chr6B | 439446723 | 439447328 | 605 | False | 694.000000 | 1048 | 98.660000 | 1 | 875 | 2 | chr6B.!!$F1 | 874 |
24 | TraesCS7B01G324400 | chr6B | 121431330 | 121431948 | 618 | True | 521.000000 | 521 | 82.035000 | 2658 | 3281 | 1 | chr6B.!!$R1 | 623 |
25 | TraesCS7B01G324400 | chr6B | 649834052 | 649834569 | 517 | True | 231.000000 | 231 | 75.191000 | 875 | 1387 | 1 | chr6B.!!$R3 | 512 |
26 | TraesCS7B01G324400 | chr6D | 457255616 | 457256361 | 745 | True | 784.000000 | 784 | 85.695000 | 2509 | 3258 | 1 | chr6D.!!$R1 | 749 |
27 | TraesCS7B01G324400 | chr6D | 430750478 | 430752065 | 1587 | True | 561.000000 | 848 | 81.152500 | 926 | 3282 | 2 | chr6D.!!$R2 | 2356 |
28 | TraesCS7B01G324400 | chr6D | 430844246 | 430847601 | 3355 | True | 467.000000 | 606 | 80.559333 | 875 | 3258 | 3 | chr6D.!!$R3 | 2383 |
29 | TraesCS7B01G324400 | chr6D | 50180341 | 50181140 | 799 | False | 351.000000 | 520 | 82.638000 | 2509 | 3253 | 2 | chr6D.!!$F2 | 744 |
30 | TraesCS7B01G324400 | chr6A | 604192068 | 604192813 | 745 | True | 767.000000 | 767 | 85.259000 | 2509 | 3258 | 1 | chr6A.!!$R4 | 749 |
31 | TraesCS7B01G324400 | chr6A | 577721968 | 577722570 | 602 | True | 614.000000 | 614 | 85.075000 | 2658 | 3258 | 1 | chr6A.!!$R3 | 600 |
32 | TraesCS7B01G324400 | chr6A | 64907085 | 64907704 | 619 | True | 484.000000 | 484 | 80.952000 | 2658 | 3281 | 1 | chr6A.!!$R1 | 623 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
92 | 93 | 0.107165 | GAAAACGAGGGGATGGGAGG | 60.107 | 60.0 | 0.00 | 0.00 | 0.00 | 4.30 | F |
130 | 131 | 0.168128 | GGTTGGCTTCGAAATCCACG | 59.832 | 55.0 | 15.89 | 0.00 | 0.00 | 4.94 | F |
131 | 132 | 0.168128 | GTTGGCTTCGAAATCCACGG | 59.832 | 55.0 | 15.89 | 0.00 | 0.00 | 4.94 | F |
132 | 133 | 0.250553 | TTGGCTTCGAAATCCACGGT | 60.251 | 50.0 | 15.89 | 0.00 | 0.00 | 4.83 | F |
973 | 980 | 0.331954 | AGGTCCTTCTCCTAGCGACA | 59.668 | 55.0 | 0.00 | 0.00 | 33.04 | 4.35 | F |
1030 | 1037 | 0.795735 | AACATTAGTCGCGGACGTCG | 60.796 | 55.0 | 9.92 | 6.26 | 41.18 | 5.12 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1735 | 1832 | 0.306533 | CCGACCGAACACAACAAAGG | 59.693 | 55.000 | 0.00 | 0.0 | 0.00 | 3.11 | R |
1738 | 1835 | 1.538634 | CCTACCGACCGAACACAACAA | 60.539 | 52.381 | 0.00 | 0.0 | 0.00 | 2.83 | R |
1752 | 1849 | 1.663702 | CCGCGGAAATAGCCTACCG | 60.664 | 63.158 | 24.07 | 0.0 | 46.74 | 4.02 | R |
2070 | 3155 | 2.178912 | TGATTGGTCAAGTTCGGGTC | 57.821 | 50.000 | 0.00 | 0.0 | 0.00 | 4.46 | R |
2597 | 3873 | 0.179000 | GTGTCATACTCCCAGCCCAG | 59.821 | 60.000 | 0.00 | 0.0 | 0.00 | 4.45 | R |
3012 | 4526 | 1.713078 | AGGGTGCTTTCCAATCTTCCT | 59.287 | 47.619 | 0.00 | 0.0 | 0.00 | 3.36 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
22 | 23 | 5.452078 | TGCAAATCCAAGTCAAAACTAGG | 57.548 | 39.130 | 0.00 | 0.00 | 33.48 | 3.02 |
23 | 24 | 4.280677 | TGCAAATCCAAGTCAAAACTAGGG | 59.719 | 41.667 | 0.00 | 0.00 | 33.48 | 3.53 |
24 | 25 | 4.280929 | GCAAATCCAAGTCAAAACTAGGGT | 59.719 | 41.667 | 0.00 | 0.00 | 33.48 | 4.34 |
25 | 26 | 5.221441 | GCAAATCCAAGTCAAAACTAGGGTT | 60.221 | 40.000 | 0.00 | 0.00 | 33.48 | 4.11 |
26 | 27 | 6.685368 | GCAAATCCAAGTCAAAACTAGGGTTT | 60.685 | 38.462 | 0.00 | 0.00 | 46.27 | 3.27 |
27 | 28 | 6.650427 | AATCCAAGTCAAAACTAGGGTTTC | 57.350 | 37.500 | 0.00 | 0.00 | 43.90 | 2.78 |
28 | 29 | 4.466827 | TCCAAGTCAAAACTAGGGTTTCC | 58.533 | 43.478 | 0.00 | 0.00 | 43.90 | 3.13 |
29 | 30 | 3.572682 | CCAAGTCAAAACTAGGGTTTCCC | 59.427 | 47.826 | 0.00 | 0.00 | 43.90 | 3.97 |
30 | 31 | 3.572682 | CAAGTCAAAACTAGGGTTTCCCC | 59.427 | 47.826 | 0.71 | 0.00 | 43.90 | 4.81 |
31 | 32 | 3.437491 | AAGTCAAAACTAGGGTTTCCCCC | 60.437 | 47.826 | 0.71 | 0.00 | 43.37 | 5.40 |
32 | 33 | 5.940301 | AAGTCAAAACTAGGGTTTCCCCCA | 61.940 | 45.833 | 0.71 | 0.00 | 45.89 | 4.96 |
33 | 34 | 7.365168 | AAGTCAAAACTAGGGTTTCCCCCAA | 62.365 | 44.000 | 0.71 | 0.00 | 45.89 | 4.12 |
34 | 35 | 8.756701 | AAGTCAAAACTAGGGTTTCCCCCAAA | 62.757 | 42.308 | 0.71 | 0.00 | 45.89 | 3.28 |
40 | 41 | 3.757836 | GGTTTCCCCCAAACTAGCA | 57.242 | 52.632 | 0.00 | 0.00 | 43.63 | 3.49 |
41 | 42 | 2.003937 | GGTTTCCCCCAAACTAGCAA | 57.996 | 50.000 | 0.00 | 0.00 | 43.63 | 3.91 |
42 | 43 | 2.536066 | GGTTTCCCCCAAACTAGCAAT | 58.464 | 47.619 | 0.00 | 0.00 | 43.63 | 3.56 |
43 | 44 | 3.703921 | GGTTTCCCCCAAACTAGCAATA | 58.296 | 45.455 | 0.00 | 0.00 | 43.63 | 1.90 |
44 | 45 | 4.286707 | GGTTTCCCCCAAACTAGCAATAT | 58.713 | 43.478 | 0.00 | 0.00 | 43.63 | 1.28 |
45 | 46 | 4.714802 | GGTTTCCCCCAAACTAGCAATATT | 59.285 | 41.667 | 0.00 | 0.00 | 43.63 | 1.28 |
46 | 47 | 5.188948 | GGTTTCCCCCAAACTAGCAATATTT | 59.811 | 40.000 | 0.00 | 0.00 | 43.63 | 1.40 |
47 | 48 | 5.930837 | TTCCCCCAAACTAGCAATATTTG | 57.069 | 39.130 | 0.00 | 0.00 | 33.90 | 2.32 |
48 | 49 | 5.199982 | TCCCCCAAACTAGCAATATTTGA | 57.800 | 39.130 | 4.74 | 0.00 | 35.73 | 2.69 |
49 | 50 | 5.200483 | TCCCCCAAACTAGCAATATTTGAG | 58.800 | 41.667 | 4.74 | 0.00 | 35.73 | 3.02 |
50 | 51 | 4.202151 | CCCCCAAACTAGCAATATTTGAGC | 60.202 | 45.833 | 4.74 | 0.00 | 35.73 | 4.26 |
51 | 52 | 4.402155 | CCCCAAACTAGCAATATTTGAGCA | 59.598 | 41.667 | 4.74 | 0.00 | 35.73 | 4.26 |
52 | 53 | 5.105392 | CCCCAAACTAGCAATATTTGAGCAA | 60.105 | 40.000 | 4.74 | 0.00 | 35.73 | 3.91 |
53 | 54 | 6.397272 | CCCAAACTAGCAATATTTGAGCAAA | 58.603 | 36.000 | 4.74 | 0.00 | 35.73 | 3.68 |
54 | 55 | 7.043565 | CCCAAACTAGCAATATTTGAGCAAAT | 58.956 | 34.615 | 12.51 | 12.51 | 42.95 | 2.32 |
55 | 56 | 7.010738 | CCCAAACTAGCAATATTTGAGCAAATG | 59.989 | 37.037 | 16.45 | 5.03 | 40.83 | 2.32 |
56 | 57 | 7.546667 | CCAAACTAGCAATATTTGAGCAAATGT | 59.453 | 33.333 | 16.45 | 8.68 | 40.83 | 2.71 |
57 | 58 | 8.377681 | CAAACTAGCAATATTTGAGCAAATGTG | 58.622 | 33.333 | 16.45 | 14.50 | 40.83 | 3.21 |
58 | 59 | 7.395190 | ACTAGCAATATTTGAGCAAATGTGA | 57.605 | 32.000 | 16.45 | 0.00 | 40.83 | 3.58 |
59 | 60 | 7.253422 | ACTAGCAATATTTGAGCAAATGTGAC | 58.747 | 34.615 | 16.45 | 7.57 | 40.83 | 3.67 |
60 | 61 | 6.028146 | AGCAATATTTGAGCAAATGTGACA | 57.972 | 33.333 | 16.45 | 0.00 | 40.83 | 3.58 |
61 | 62 | 6.457355 | AGCAATATTTGAGCAAATGTGACAA | 58.543 | 32.000 | 16.45 | 0.00 | 40.83 | 3.18 |
62 | 63 | 7.101054 | AGCAATATTTGAGCAAATGTGACAAT | 58.899 | 30.769 | 16.45 | 0.95 | 40.83 | 2.71 |
63 | 64 | 7.604927 | AGCAATATTTGAGCAAATGTGACAATT | 59.395 | 29.630 | 16.45 | 6.24 | 40.83 | 2.32 |
64 | 65 | 7.901377 | GCAATATTTGAGCAAATGTGACAATTC | 59.099 | 33.333 | 16.45 | 1.06 | 40.83 | 2.17 |
65 | 66 | 8.385111 | CAATATTTGAGCAAATGTGACAATTCC | 58.615 | 33.333 | 16.45 | 0.00 | 40.83 | 3.01 |
66 | 67 | 5.534207 | TTTGAGCAAATGTGACAATTCCT | 57.466 | 34.783 | 0.00 | 0.00 | 0.00 | 3.36 |
67 | 68 | 6.647334 | TTTGAGCAAATGTGACAATTCCTA | 57.353 | 33.333 | 0.00 | 0.00 | 0.00 | 2.94 |
68 | 69 | 6.839124 | TTGAGCAAATGTGACAATTCCTAT | 57.161 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
69 | 70 | 6.198650 | TGAGCAAATGTGACAATTCCTATG | 57.801 | 37.500 | 0.00 | 0.00 | 0.00 | 2.23 |
70 | 71 | 5.125900 | TGAGCAAATGTGACAATTCCTATGG | 59.874 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
71 | 72 | 5.263599 | AGCAAATGTGACAATTCCTATGGA | 58.736 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
72 | 73 | 5.895534 | AGCAAATGTGACAATTCCTATGGAT | 59.104 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
73 | 74 | 5.981315 | GCAAATGTGACAATTCCTATGGATG | 59.019 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
74 | 75 | 6.183360 | GCAAATGTGACAATTCCTATGGATGA | 60.183 | 38.462 | 0.00 | 0.00 | 0.00 | 2.92 |
75 | 76 | 7.631161 | GCAAATGTGACAATTCCTATGGATGAA | 60.631 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
76 | 77 | 7.959658 | AATGTGACAATTCCTATGGATGAAA | 57.040 | 32.000 | 0.00 | 0.00 | 0.00 | 2.69 |
77 | 78 | 7.959658 | ATGTGACAATTCCTATGGATGAAAA | 57.040 | 32.000 | 0.00 | 0.00 | 0.00 | 2.29 |
78 | 79 | 7.156876 | TGTGACAATTCCTATGGATGAAAAC | 57.843 | 36.000 | 0.00 | 0.00 | 0.00 | 2.43 |
79 | 80 | 6.128035 | TGTGACAATTCCTATGGATGAAAACG | 60.128 | 38.462 | 0.00 | 0.00 | 0.00 | 3.60 |
80 | 81 | 6.093495 | GTGACAATTCCTATGGATGAAAACGA | 59.907 | 38.462 | 0.00 | 0.00 | 0.00 | 3.85 |
81 | 82 | 6.316140 | TGACAATTCCTATGGATGAAAACGAG | 59.684 | 38.462 | 0.00 | 0.00 | 0.00 | 4.18 |
82 | 83 | 5.590259 | ACAATTCCTATGGATGAAAACGAGG | 59.410 | 40.000 | 0.00 | 0.00 | 0.00 | 4.63 |
83 | 84 | 3.838244 | TCCTATGGATGAAAACGAGGG | 57.162 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
84 | 85 | 2.438021 | TCCTATGGATGAAAACGAGGGG | 59.562 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
85 | 86 | 2.438021 | CCTATGGATGAAAACGAGGGGA | 59.562 | 50.000 | 0.00 | 0.00 | 0.00 | 4.81 |
86 | 87 | 3.073062 | CCTATGGATGAAAACGAGGGGAT | 59.927 | 47.826 | 0.00 | 0.00 | 0.00 | 3.85 |
87 | 88 | 2.418368 | TGGATGAAAACGAGGGGATG | 57.582 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
88 | 89 | 1.064758 | TGGATGAAAACGAGGGGATGG | 60.065 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
89 | 90 | 1.680338 | GATGAAAACGAGGGGATGGG | 58.320 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
90 | 91 | 1.211949 | GATGAAAACGAGGGGATGGGA | 59.788 | 52.381 | 0.00 | 0.00 | 0.00 | 4.37 |
91 | 92 | 0.618458 | TGAAAACGAGGGGATGGGAG | 59.382 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
92 | 93 | 0.107165 | GAAAACGAGGGGATGGGAGG | 60.107 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
93 | 94 | 0.549169 | AAAACGAGGGGATGGGAGGA | 60.549 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
94 | 95 | 0.983378 | AAACGAGGGGATGGGAGGAG | 60.983 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
95 | 96 | 1.886730 | AACGAGGGGATGGGAGGAGA | 61.887 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 |
96 | 97 | 1.157276 | CGAGGGGATGGGAGGAGAT | 59.843 | 63.158 | 0.00 | 0.00 | 0.00 | 2.75 |
97 | 98 | 0.472734 | CGAGGGGATGGGAGGAGATT | 60.473 | 60.000 | 0.00 | 0.00 | 0.00 | 2.40 |
98 | 99 | 1.203187 | CGAGGGGATGGGAGGAGATTA | 60.203 | 57.143 | 0.00 | 0.00 | 0.00 | 1.75 |
99 | 100 | 2.261729 | GAGGGGATGGGAGGAGATTAC | 58.738 | 57.143 | 0.00 | 0.00 | 0.00 | 1.89 |
100 | 101 | 1.132365 | AGGGGATGGGAGGAGATTACC | 60.132 | 57.143 | 0.00 | 0.00 | 0.00 | 2.85 |
101 | 102 | 1.132365 | GGGGATGGGAGGAGATTACCT | 60.132 | 57.143 | 0.00 | 0.00 | 43.64 | 3.08 |
102 | 103 | 2.700540 | GGGGATGGGAGGAGATTACCTT | 60.701 | 54.545 | 0.00 | 0.00 | 40.73 | 3.50 |
103 | 104 | 3.441054 | GGGGATGGGAGGAGATTACCTTA | 60.441 | 52.174 | 0.00 | 0.00 | 40.73 | 2.69 |
104 | 105 | 4.240323 | GGGATGGGAGGAGATTACCTTAA | 58.760 | 47.826 | 0.00 | 0.00 | 40.73 | 1.85 |
105 | 106 | 4.287326 | GGGATGGGAGGAGATTACCTTAAG | 59.713 | 50.000 | 0.00 | 0.00 | 40.73 | 1.85 |
106 | 107 | 4.287326 | GGATGGGAGGAGATTACCTTAAGG | 59.713 | 50.000 | 20.42 | 20.42 | 40.73 | 2.69 |
107 | 108 | 3.665443 | TGGGAGGAGATTACCTTAAGGG | 58.335 | 50.000 | 25.31 | 7.85 | 40.73 | 3.95 |
108 | 109 | 3.276578 | TGGGAGGAGATTACCTTAAGGGA | 59.723 | 47.826 | 25.31 | 15.27 | 40.73 | 4.20 |
109 | 110 | 3.904965 | GGGAGGAGATTACCTTAAGGGAG | 59.095 | 52.174 | 25.31 | 0.91 | 40.73 | 4.30 |
110 | 111 | 3.904965 | GGAGGAGATTACCTTAAGGGAGG | 59.095 | 52.174 | 25.31 | 1.03 | 40.73 | 4.30 |
111 | 112 | 3.904965 | GAGGAGATTACCTTAAGGGAGGG | 59.095 | 52.174 | 25.31 | 0.97 | 41.31 | 4.30 |
112 | 113 | 2.980379 | GGAGATTACCTTAAGGGAGGGG | 59.020 | 54.545 | 25.31 | 0.19 | 41.31 | 4.79 |
113 | 114 | 3.635531 | GGAGATTACCTTAAGGGAGGGGT | 60.636 | 52.174 | 25.31 | 6.76 | 41.31 | 4.95 |
114 | 115 | 4.045736 | GAGATTACCTTAAGGGAGGGGTT | 58.954 | 47.826 | 25.31 | 5.15 | 41.31 | 4.11 |
115 | 116 | 3.786450 | AGATTACCTTAAGGGAGGGGTTG | 59.214 | 47.826 | 25.31 | 0.00 | 41.31 | 3.77 |
116 | 117 | 1.975471 | TACCTTAAGGGAGGGGTTGG | 58.025 | 55.000 | 25.31 | 0.00 | 41.31 | 3.77 |
117 | 118 | 1.306633 | CCTTAAGGGAGGGGTTGGC | 59.693 | 63.158 | 14.25 | 0.00 | 37.23 | 4.52 |
118 | 119 | 1.214992 | CCTTAAGGGAGGGGTTGGCT | 61.215 | 60.000 | 14.25 | 0.00 | 37.23 | 4.75 |
119 | 120 | 0.704664 | CTTAAGGGAGGGGTTGGCTT | 59.295 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
120 | 121 | 0.702316 | TTAAGGGAGGGGTTGGCTTC | 59.298 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
121 | 122 | 1.559065 | TAAGGGAGGGGTTGGCTTCG | 61.559 | 60.000 | 0.00 | 0.00 | 0.00 | 3.79 |
122 | 123 | 3.327404 | GGGAGGGGTTGGCTTCGA | 61.327 | 66.667 | 0.00 | 0.00 | 0.00 | 3.71 |
123 | 124 | 2.754375 | GGAGGGGTTGGCTTCGAA | 59.246 | 61.111 | 0.00 | 0.00 | 0.00 | 3.71 |
124 | 125 | 1.074248 | GGAGGGGTTGGCTTCGAAA | 59.926 | 57.895 | 0.00 | 0.00 | 0.00 | 3.46 |
125 | 126 | 0.323451 | GGAGGGGTTGGCTTCGAAAT | 60.323 | 55.000 | 0.00 | 0.00 | 0.00 | 2.17 |
126 | 127 | 1.095600 | GAGGGGTTGGCTTCGAAATC | 58.904 | 55.000 | 0.00 | 0.00 | 0.00 | 2.17 |
127 | 128 | 0.323451 | AGGGGTTGGCTTCGAAATCC | 60.323 | 55.000 | 0.00 | 4.20 | 0.00 | 3.01 |
128 | 129 | 0.610785 | GGGGTTGGCTTCGAAATCCA | 60.611 | 55.000 | 13.11 | 13.11 | 0.00 | 3.41 |
129 | 130 | 0.526211 | GGGTTGGCTTCGAAATCCAC | 59.474 | 55.000 | 15.89 | 11.75 | 0.00 | 4.02 |
130 | 131 | 0.168128 | GGTTGGCTTCGAAATCCACG | 59.832 | 55.000 | 15.89 | 0.00 | 0.00 | 4.94 |
131 | 132 | 0.168128 | GTTGGCTTCGAAATCCACGG | 59.832 | 55.000 | 15.89 | 0.00 | 0.00 | 4.94 |
132 | 133 | 0.250553 | TTGGCTTCGAAATCCACGGT | 60.251 | 50.000 | 15.89 | 0.00 | 0.00 | 4.83 |
133 | 134 | 0.672401 | TGGCTTCGAAATCCACGGTC | 60.672 | 55.000 | 13.11 | 0.00 | 0.00 | 4.79 |
134 | 135 | 0.672401 | GGCTTCGAAATCCACGGTCA | 60.672 | 55.000 | 10.32 | 0.00 | 0.00 | 4.02 |
135 | 136 | 1.153353 | GCTTCGAAATCCACGGTCAA | 58.847 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
136 | 137 | 1.533731 | GCTTCGAAATCCACGGTCAAA | 59.466 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
137 | 138 | 2.161609 | GCTTCGAAATCCACGGTCAAAT | 59.838 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
138 | 139 | 3.372822 | GCTTCGAAATCCACGGTCAAATA | 59.627 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
139 | 140 | 4.726876 | GCTTCGAAATCCACGGTCAAATAC | 60.727 | 45.833 | 0.00 | 0.00 | 0.00 | 1.89 |
140 | 141 | 4.196626 | TCGAAATCCACGGTCAAATACT | 57.803 | 40.909 | 0.00 | 0.00 | 0.00 | 2.12 |
141 | 142 | 4.178540 | TCGAAATCCACGGTCAAATACTC | 58.821 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
142 | 143 | 3.308866 | CGAAATCCACGGTCAAATACTCC | 59.691 | 47.826 | 0.00 | 0.00 | 0.00 | 3.85 |
149 | 150 | 3.944422 | CGGTCAAATACTCCGGATTTG | 57.056 | 47.619 | 18.83 | 18.83 | 42.94 | 2.32 |
150 | 151 | 2.031683 | CGGTCAAATACTCCGGATTTGC | 59.968 | 50.000 | 19.72 | 15.29 | 41.86 | 3.68 |
151 | 152 | 3.013921 | GGTCAAATACTCCGGATTTGCA | 58.986 | 45.455 | 19.72 | 9.45 | 41.86 | 4.08 |
152 | 153 | 3.442273 | GGTCAAATACTCCGGATTTGCAA | 59.558 | 43.478 | 19.72 | 0.00 | 41.86 | 4.08 |
153 | 154 | 4.438744 | GGTCAAATACTCCGGATTTGCAAG | 60.439 | 45.833 | 19.72 | 3.87 | 41.86 | 4.01 |
154 | 155 | 4.394920 | GTCAAATACTCCGGATTTGCAAGA | 59.605 | 41.667 | 19.72 | 5.52 | 41.86 | 3.02 |
155 | 156 | 5.066505 | GTCAAATACTCCGGATTTGCAAGAT | 59.933 | 40.000 | 19.72 | 0.00 | 41.86 | 2.40 |
156 | 157 | 5.652014 | TCAAATACTCCGGATTTGCAAGATT | 59.348 | 36.000 | 19.72 | 2.50 | 41.86 | 2.40 |
157 | 158 | 6.152661 | TCAAATACTCCGGATTTGCAAGATTT | 59.847 | 34.615 | 19.72 | 7.81 | 41.86 | 2.17 |
158 | 159 | 3.855689 | ACTCCGGATTTGCAAGATTTG | 57.144 | 42.857 | 3.57 | 0.00 | 0.00 | 2.32 |
159 | 160 | 3.420893 | ACTCCGGATTTGCAAGATTTGA | 58.579 | 40.909 | 3.57 | 0.00 | 0.00 | 2.69 |
160 | 161 | 3.441572 | ACTCCGGATTTGCAAGATTTGAG | 59.558 | 43.478 | 3.57 | 7.44 | 0.00 | 3.02 |
161 | 162 | 3.684908 | TCCGGATTTGCAAGATTTGAGA | 58.315 | 40.909 | 0.00 | 0.00 | 0.00 | 3.27 |
162 | 163 | 4.078537 | TCCGGATTTGCAAGATTTGAGAA | 58.921 | 39.130 | 0.00 | 0.00 | 0.00 | 2.87 |
163 | 164 | 4.156556 | TCCGGATTTGCAAGATTTGAGAAG | 59.843 | 41.667 | 0.00 | 0.00 | 0.00 | 2.85 |
164 | 165 | 4.418392 | CGGATTTGCAAGATTTGAGAAGG | 58.582 | 43.478 | 0.00 | 0.00 | 0.00 | 3.46 |
165 | 166 | 4.156556 | CGGATTTGCAAGATTTGAGAAGGA | 59.843 | 41.667 | 0.00 | 0.00 | 0.00 | 3.36 |
166 | 167 | 5.163581 | CGGATTTGCAAGATTTGAGAAGGAT | 60.164 | 40.000 | 0.00 | 0.00 | 0.00 | 3.24 |
167 | 168 | 6.626623 | CGGATTTGCAAGATTTGAGAAGGATT | 60.627 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
168 | 169 | 7.101700 | GGATTTGCAAGATTTGAGAAGGATTT | 58.898 | 34.615 | 0.00 | 0.00 | 0.00 | 2.17 |
169 | 170 | 7.064253 | GGATTTGCAAGATTTGAGAAGGATTTG | 59.936 | 37.037 | 0.00 | 0.00 | 0.00 | 2.32 |
170 | 171 | 6.653526 | TTGCAAGATTTGAGAAGGATTTGA | 57.346 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
171 | 172 | 6.263516 | TGCAAGATTTGAGAAGGATTTGAG | 57.736 | 37.500 | 0.00 | 0.00 | 0.00 | 3.02 |
172 | 173 | 6.005823 | TGCAAGATTTGAGAAGGATTTGAGA | 58.994 | 36.000 | 0.00 | 0.00 | 0.00 | 3.27 |
173 | 174 | 6.150641 | TGCAAGATTTGAGAAGGATTTGAGAG | 59.849 | 38.462 | 0.00 | 0.00 | 0.00 | 3.20 |
174 | 175 | 6.404513 | GCAAGATTTGAGAAGGATTTGAGAGG | 60.405 | 42.308 | 0.00 | 0.00 | 0.00 | 3.69 |
175 | 176 | 5.753716 | AGATTTGAGAAGGATTTGAGAGGG | 58.246 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
176 | 177 | 4.307032 | TTTGAGAAGGATTTGAGAGGGG | 57.693 | 45.455 | 0.00 | 0.00 | 0.00 | 4.79 |
177 | 178 | 2.200081 | TGAGAAGGATTTGAGAGGGGG | 58.800 | 52.381 | 0.00 | 0.00 | 0.00 | 5.40 |
922 | 925 | 0.524862 | CACCTGCTGCCTTGCTTAAG | 59.475 | 55.000 | 0.00 | 0.00 | 0.00 | 1.85 |
937 | 942 | 2.418976 | GCTTAAGTAAAACCTCTGCCCG | 59.581 | 50.000 | 4.02 | 0.00 | 0.00 | 6.13 |
960 | 965 | 1.201429 | ACCAATTCCAGCGAGGTCCT | 61.201 | 55.000 | 0.00 | 0.00 | 39.02 | 3.85 |
963 | 968 | 1.065854 | CAATTCCAGCGAGGTCCTTCT | 60.066 | 52.381 | 0.00 | 0.00 | 39.02 | 2.85 |
966 | 972 | 1.684049 | CCAGCGAGGTCCTTCTCCT | 60.684 | 63.158 | 0.00 | 0.00 | 38.09 | 3.69 |
973 | 980 | 0.331954 | AGGTCCTTCTCCTAGCGACA | 59.668 | 55.000 | 0.00 | 0.00 | 33.04 | 4.35 |
976 | 983 | 1.544691 | GTCCTTCTCCTAGCGACAACA | 59.455 | 52.381 | 0.00 | 0.00 | 0.00 | 3.33 |
983 | 990 | 1.344942 | CCTAGCGACAACAGCGACAC | 61.345 | 60.000 | 0.00 | 0.00 | 40.04 | 3.67 |
1018 | 1025 | 4.201980 | CCATCATGTGTGGCAGAACATTAG | 60.202 | 45.833 | 11.92 | 4.29 | 34.81 | 1.73 |
1030 | 1037 | 0.795735 | AACATTAGTCGCGGACGTCG | 60.796 | 55.000 | 9.92 | 6.26 | 41.18 | 5.12 |
1095 | 1102 | 1.136305 | CCCGAGAATAAGAAGCACCGA | 59.864 | 52.381 | 0.00 | 0.00 | 0.00 | 4.69 |
1118 | 1125 | 4.250170 | AGGTGGTGGGGGTCGACT | 62.250 | 66.667 | 16.46 | 0.00 | 0.00 | 4.18 |
1165 | 1172 | 1.285950 | CTCGAGCTGGACAACGACA | 59.714 | 57.895 | 0.00 | 0.00 | 0.00 | 4.35 |
1202 | 1209 | 3.326747 | CCGATTTTGAGAAGTTCGAGGT | 58.673 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
1257 | 1264 | 2.028112 | CGGTGGAGTTGATGAGAAGGAA | 60.028 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1357 | 1365 | 8.448615 | GTTCGCTTGGACTAGTTTTTAATATGT | 58.551 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
1379 | 1397 | 7.477144 | TGTGTATCATTACCTTTAGCGATTG | 57.523 | 36.000 | 0.00 | 0.00 | 0.00 | 2.67 |
1380 | 1398 | 7.269316 | TGTGTATCATTACCTTTAGCGATTGA | 58.731 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
1381 | 1399 | 7.931407 | TGTGTATCATTACCTTTAGCGATTGAT | 59.069 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
1382 | 1400 | 8.223769 | GTGTATCATTACCTTTAGCGATTGATG | 58.776 | 37.037 | 0.00 | 0.00 | 0.00 | 3.07 |
1383 | 1401 | 7.931407 | TGTATCATTACCTTTAGCGATTGATGT | 59.069 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
1384 | 1402 | 6.603237 | TCATTACCTTTAGCGATTGATGTG | 57.397 | 37.500 | 0.00 | 0.00 | 0.00 | 3.21 |
1410 | 1428 | 4.483476 | ACATTCGTCTTGGTTTGTTAGC | 57.517 | 40.909 | 0.00 | 0.00 | 0.00 | 3.09 |
1565 | 1645 | 3.132467 | GCAGGACGGAGGTAGTAGAAATT | 59.868 | 47.826 | 0.00 | 0.00 | 0.00 | 1.82 |
1576 | 1656 | 6.116126 | AGGTAGTAGAAATTGGAGATTGTGC | 58.884 | 40.000 | 0.00 | 0.00 | 0.00 | 4.57 |
1584 | 1664 | 1.737838 | TGGAGATTGTGCGATTGGTC | 58.262 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1586 | 1666 | 1.017387 | GAGATTGTGCGATTGGTCCC | 58.983 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
1591 | 1671 | 0.958091 | TGTGCGATTGGTCCCAAAAG | 59.042 | 50.000 | 2.32 | 1.70 | 39.55 | 2.27 |
1628 | 1713 | 6.030228 | CGATTGGGTAGAAGAGAAATTTTGC | 58.970 | 40.000 | 0.00 | 0.00 | 0.00 | 3.68 |
1634 | 1719 | 4.118168 | AGAAGAGAAATTTTGCAGGGGA | 57.882 | 40.909 | 0.00 | 0.00 | 0.00 | 4.81 |
1667 | 1753 | 2.021457 | GCTATGTTTGGGCGGTGTTAT | 58.979 | 47.619 | 0.00 | 0.00 | 0.00 | 1.89 |
1676 | 1762 | 1.471287 | GGGCGGTGTTATTCCTGTTTC | 59.529 | 52.381 | 0.00 | 0.00 | 0.00 | 2.78 |
1709 | 1804 | 5.533903 | GGATGTGCTATCATGGAGTGATTTT | 59.466 | 40.000 | 0.00 | 0.00 | 45.25 | 1.82 |
1723 | 1818 | 5.061721 | AGTGATTTTGGTGAAGGGTTAGT | 57.938 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
1724 | 1819 | 5.070685 | AGTGATTTTGGTGAAGGGTTAGTC | 58.929 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
1735 | 1832 | 5.183331 | GTGAAGGGTTAGTCCTTTTCCATTC | 59.817 | 44.000 | 0.00 | 0.00 | 46.31 | 2.67 |
1738 | 1835 | 4.357097 | AGGGTTAGTCCTTTTCCATTCCTT | 59.643 | 41.667 | 0.00 | 0.00 | 32.13 | 3.36 |
1752 | 1849 | 3.550030 | CCATTCCTTTGTTGTGTTCGGTC | 60.550 | 47.826 | 0.00 | 0.00 | 0.00 | 4.79 |
1837 | 2105 | 4.583073 | GTGTGTGTTAGGAACCAAGGATTT | 59.417 | 41.667 | 0.00 | 0.00 | 0.00 | 2.17 |
1928 | 2231 | 2.897436 | TCCTTGATTCTGCATCGTCTG | 58.103 | 47.619 | 0.00 | 0.00 | 34.08 | 3.51 |
1977 | 2281 | 4.683781 | GCAGAATGATGTCGAAGGTCTATC | 59.316 | 45.833 | 0.00 | 0.00 | 39.69 | 2.08 |
2070 | 3155 | 2.163010 | GTGGGTGACTGATGATGCTTTG | 59.837 | 50.000 | 0.00 | 0.00 | 0.00 | 2.77 |
2085 | 3181 | 1.961793 | CTTTGACCCGAACTTGACCA | 58.038 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2106 | 3202 | 5.165676 | CCAATCATGGTTCAGTGTTCATTG | 58.834 | 41.667 | 0.00 | 0.00 | 42.18 | 2.82 |
2111 | 3207 | 6.237154 | TCATGGTTCAGTGTTCATTGTGATA | 58.763 | 36.000 | 0.00 | 0.00 | 0.00 | 2.15 |
2171 | 3276 | 9.996554 | TTTACTATCTGTGAGAGAAATTTGTCA | 57.003 | 29.630 | 16.80 | 4.53 | 33.12 | 3.58 |
2293 | 3398 | 7.926018 | GCAAAAAGGAAGAGAAAGAACCAAATA | 59.074 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2298 | 3403 | 6.209589 | AGGAAGAGAAAGAACCAAATAAAGGC | 59.790 | 38.462 | 0.00 | 0.00 | 0.00 | 4.35 |
2322 | 3427 | 1.376812 | GTCAACGCCCCTTGGGTAG | 60.377 | 63.158 | 4.84 | 0.83 | 46.51 | 3.18 |
2328 | 3433 | 2.126372 | CCCCTTGGGTAGGTGGGA | 59.874 | 66.667 | 4.84 | 0.00 | 43.07 | 4.37 |
2388 | 3496 | 2.480845 | GCTCGGTACTTTCAACAGTGT | 58.519 | 47.619 | 0.00 | 0.00 | 0.00 | 3.55 |
2478 | 3706 | 2.348472 | TCCAGAGGAACCAACAGGATT | 58.652 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
2547 | 3823 | 2.069776 | CCCCTGTTGAAGCTCCTGA | 58.930 | 57.895 | 0.00 | 0.00 | 0.00 | 3.86 |
2560 | 3836 | 8.703743 | GTTGAAGCTCCTGATATGGATATCTAT | 58.296 | 37.037 | 6.80 | 6.80 | 39.82 | 1.98 |
2584 | 3860 | 4.040461 | TCTGACCAGGGAAGTAACTCTTTG | 59.960 | 45.833 | 0.00 | 0.00 | 36.40 | 2.77 |
2586 | 3862 | 4.202326 | TGACCAGGGAAGTAACTCTTTGTC | 60.202 | 45.833 | 0.00 | 0.00 | 36.40 | 3.18 |
2597 | 3873 | 1.346068 | ACTCTTTGTCCTGCTCTGACC | 59.654 | 52.381 | 0.00 | 0.00 | 31.60 | 4.02 |
2620 | 3896 | 1.679032 | GGCTGGGAGTATGACACCAAC | 60.679 | 57.143 | 0.00 | 0.00 | 29.85 | 3.77 |
2650 | 3926 | 6.839454 | AGATATATCATCCATTGCTCCCATC | 58.161 | 40.000 | 15.08 | 0.00 | 0.00 | 3.51 |
2663 | 3939 | 2.549778 | GCTCCCATCTCTACCATTGCTC | 60.550 | 54.545 | 0.00 | 0.00 | 0.00 | 4.26 |
2718 | 4225 | 3.780294 | ACCTATAACTCATTGGTGCCTCA | 59.220 | 43.478 | 0.00 | 0.00 | 40.71 | 3.86 |
2733 | 4240 | 5.073554 | TGGTGCCTCATGTTATGGAGAATAT | 59.926 | 40.000 | 0.00 | 0.00 | 32.87 | 1.28 |
2771 | 4278 | 6.257411 | CGAACCATGGATGAGATATCTTATGC | 59.743 | 42.308 | 21.47 | 18.53 | 32.31 | 3.14 |
2807 | 4314 | 3.323115 | TGAGCTGATTGATAGCCTACTGG | 59.677 | 47.826 | 0.00 | 0.00 | 42.07 | 4.00 |
2819 | 4326 | 4.574674 | AGCCTACTGGATTTTGATGTGA | 57.425 | 40.909 | 0.00 | 0.00 | 34.57 | 3.58 |
2864 | 4372 | 1.002366 | CCTTTGGAGCTTCGATGACG | 58.998 | 55.000 | 1.89 | 0.00 | 41.26 | 4.35 |
2891 | 4400 | 6.337356 | CCCATACGTGGCAAATTTTTCTAAT | 58.663 | 36.000 | 0.00 | 0.00 | 44.62 | 1.73 |
3012 | 4526 | 8.208224 | TGTTCTGTGTTTCAGGAATAAGACTAA | 58.792 | 33.333 | 0.00 | 0.00 | 43.76 | 2.24 |
3083 | 4597 | 3.507233 | TGTCCAAGCTTAGATGCAAAAGG | 59.493 | 43.478 | 0.00 | 0.00 | 34.99 | 3.11 |
3105 | 4621 | 3.078837 | GTTGCATCCCGGTTCTCTTTTA | 58.921 | 45.455 | 0.00 | 0.00 | 0.00 | 1.52 |
3115 | 4631 | 5.353938 | CCGGTTCTCTTTTATAATCGACCA | 58.646 | 41.667 | 0.00 | 0.00 | 0.00 | 4.02 |
3135 | 4651 | 4.351111 | ACCATTTCCCTAGTTGTCTGTCTT | 59.649 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
3142 | 4662 | 4.442893 | CCCTAGTTGTCTGTCTTTGTGTGA | 60.443 | 45.833 | 0.00 | 0.00 | 0.00 | 3.58 |
3203 | 4731 | 8.300286 | TCTTTTGTCAACTTTTATGTTGTCACA | 58.700 | 29.630 | 6.77 | 3.34 | 45.26 | 3.58 |
3310 | 4838 | 3.674528 | AGGGTATTGATGAGAGATGCG | 57.325 | 47.619 | 0.00 | 0.00 | 0.00 | 4.73 |
3371 | 4900 | 7.156673 | GGTTTTAAGTTTTAATTGACCCCCTC | 58.843 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
3372 | 4901 | 6.921486 | TTTAAGTTTTAATTGACCCCCTCC | 57.079 | 37.500 | 0.00 | 0.00 | 0.00 | 4.30 |
3373 | 4902 | 4.759793 | AAGTTTTAATTGACCCCCTCCT | 57.240 | 40.909 | 0.00 | 0.00 | 0.00 | 3.69 |
3374 | 4903 | 4.759793 | AGTTTTAATTGACCCCCTCCTT | 57.240 | 40.909 | 0.00 | 0.00 | 0.00 | 3.36 |
3375 | 4904 | 5.087923 | AGTTTTAATTGACCCCCTCCTTT | 57.912 | 39.130 | 0.00 | 0.00 | 0.00 | 3.11 |
3463 | 5023 | 5.514274 | AAGGTTCACACAATTCACGAATT | 57.486 | 34.783 | 0.00 | 0.00 | 41.33 | 2.17 |
3474 | 5034 | 8.663911 | ACACAATTCACGAATTTCACAATTTTT | 58.336 | 25.926 | 2.24 | 0.00 | 38.84 | 1.94 |
3484 | 5046 | 9.833894 | CGAATTTCACAATTTTTGAGTTTACAG | 57.166 | 29.630 | 0.00 | 0.00 | 32.35 | 2.74 |
3511 | 5073 | 9.388506 | ACCAAATTATTCAAATTGAAACACACA | 57.611 | 25.926 | 12.75 | 0.00 | 40.12 | 3.72 |
3521 | 5083 | 4.873746 | TTGAAACACACAAAAGGGTTCA | 57.126 | 36.364 | 0.00 | 0.00 | 0.00 | 3.18 |
3522 | 5084 | 4.873746 | TGAAACACACAAAAGGGTTCAA | 57.126 | 36.364 | 0.00 | 0.00 | 0.00 | 2.69 |
3523 | 5085 | 5.215252 | TGAAACACACAAAAGGGTTCAAA | 57.785 | 34.783 | 0.00 | 0.00 | 0.00 | 2.69 |
3524 | 5086 | 5.799213 | TGAAACACACAAAAGGGTTCAAAT | 58.201 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
3525 | 5087 | 5.641209 | TGAAACACACAAAAGGGTTCAAATG | 59.359 | 36.000 | 0.00 | 0.00 | 0.00 | 2.32 |
3552 | 5119 | 8.240883 | AGTAAAGAGCACGATAAAAGTACAAG | 57.759 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
3573 | 5140 | 8.470657 | ACAAGTATGAAGTGCTATAGAGATGA | 57.529 | 34.615 | 3.21 | 0.00 | 0.00 | 2.92 |
3576 | 5143 | 8.470657 | AGTATGAAGTGCTATAGAGATGACAA | 57.529 | 34.615 | 3.21 | 0.00 | 0.00 | 3.18 |
3602 | 5169 | 6.906157 | ATGGTCAACAAGATCATGAAGTTT | 57.094 | 33.333 | 4.68 | 0.00 | 46.27 | 2.66 |
3637 | 5207 | 0.166814 | GTTCTCGATGCTTGTGTGCC | 59.833 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
3666 | 5239 | 2.762535 | TCCCGTAAAAGAGAAGCCAG | 57.237 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
3667 | 5240 | 1.087501 | CCCGTAAAAGAGAAGCCAGC | 58.912 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
3668 | 5241 | 1.610624 | CCCGTAAAAGAGAAGCCAGCA | 60.611 | 52.381 | 0.00 | 0.00 | 0.00 | 4.41 |
3669 | 5242 | 2.151202 | CCGTAAAAGAGAAGCCAGCAA | 58.849 | 47.619 | 0.00 | 0.00 | 0.00 | 3.91 |
3834 | 5424 | 3.967326 | CCCACCCCTTTCTCTTTCTTTTT | 59.033 | 43.478 | 0.00 | 0.00 | 0.00 | 1.94 |
3870 | 5460 | 5.240183 | TCTGAATTTGGCTGTTCTTTCTGAG | 59.760 | 40.000 | 0.00 | 0.00 | 0.00 | 3.35 |
3871 | 5461 | 4.889409 | TGAATTTGGCTGTTCTTTCTGAGT | 59.111 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
3873 | 5463 | 5.948992 | ATTTGGCTGTTCTTTCTGAGTAC | 57.051 | 39.130 | 0.00 | 0.00 | 0.00 | 2.73 |
3881 | 5471 | 0.734253 | CTTTCTGAGTACGCAGCGCT | 60.734 | 55.000 | 20.52 | 2.64 | 35.86 | 5.92 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 4.280677 | CCCTAGTTTTGACTTGGATTTGCA | 59.719 | 41.667 | 8.31 | 0.00 | 35.16 | 4.08 |
1 | 2 | 4.280929 | ACCCTAGTTTTGACTTGGATTTGC | 59.719 | 41.667 | 8.31 | 0.00 | 35.16 | 3.68 |
2 | 3 | 6.405278 | AACCCTAGTTTTGACTTGGATTTG | 57.595 | 37.500 | 8.31 | 0.00 | 35.16 | 2.32 |
5 | 6 | 5.077564 | GGAAACCCTAGTTTTGACTTGGAT | 58.922 | 41.667 | 8.31 | 0.00 | 46.25 | 3.41 |
6 | 7 | 4.466827 | GGAAACCCTAGTTTTGACTTGGA | 58.533 | 43.478 | 8.31 | 0.00 | 46.25 | 3.53 |
7 | 8 | 3.572682 | GGGAAACCCTAGTTTTGACTTGG | 59.427 | 47.826 | 0.00 | 0.87 | 46.25 | 3.61 |
8 | 9 | 4.848562 | GGGAAACCCTAGTTTTGACTTG | 57.151 | 45.455 | 0.00 | 0.00 | 46.25 | 3.16 |
22 | 23 | 8.938772 | TCAAATATTGCTAGTTTGGGGGAAACC | 61.939 | 40.741 | 8.24 | 0.00 | 44.54 | 3.27 |
23 | 24 | 5.932619 | AATATTGCTAGTTTGGGGGAAAC | 57.067 | 39.130 | 0.00 | 0.00 | 43.89 | 2.78 |
24 | 25 | 6.019748 | TCAAATATTGCTAGTTTGGGGGAAA | 58.980 | 36.000 | 8.24 | 0.00 | 34.48 | 3.13 |
25 | 26 | 5.584913 | TCAAATATTGCTAGTTTGGGGGAA | 58.415 | 37.500 | 8.24 | 0.00 | 34.48 | 3.97 |
26 | 27 | 5.199982 | TCAAATATTGCTAGTTTGGGGGA | 57.800 | 39.130 | 8.24 | 0.00 | 34.48 | 4.81 |
27 | 28 | 4.202151 | GCTCAAATATTGCTAGTTTGGGGG | 60.202 | 45.833 | 9.50 | 3.69 | 34.65 | 5.40 |
28 | 29 | 4.402155 | TGCTCAAATATTGCTAGTTTGGGG | 59.598 | 41.667 | 9.50 | 5.34 | 34.65 | 4.96 |
29 | 30 | 5.581126 | TGCTCAAATATTGCTAGTTTGGG | 57.419 | 39.130 | 8.24 | 6.63 | 36.61 | 4.12 |
30 | 31 | 7.546667 | ACATTTGCTCAAATATTGCTAGTTTGG | 59.453 | 33.333 | 7.44 | 0.00 | 38.84 | 3.28 |
31 | 32 | 8.377681 | CACATTTGCTCAAATATTGCTAGTTTG | 58.622 | 33.333 | 7.44 | 0.00 | 38.84 | 2.93 |
32 | 33 | 8.306038 | TCACATTTGCTCAAATATTGCTAGTTT | 58.694 | 29.630 | 7.44 | 0.00 | 38.84 | 2.66 |
33 | 34 | 7.756722 | GTCACATTTGCTCAAATATTGCTAGTT | 59.243 | 33.333 | 7.44 | 0.00 | 38.84 | 2.24 |
34 | 35 | 7.094248 | TGTCACATTTGCTCAAATATTGCTAGT | 60.094 | 33.333 | 7.44 | 0.00 | 38.84 | 2.57 |
35 | 36 | 7.252708 | TGTCACATTTGCTCAAATATTGCTAG | 58.747 | 34.615 | 7.44 | 0.00 | 38.84 | 3.42 |
36 | 37 | 7.155655 | TGTCACATTTGCTCAAATATTGCTA | 57.844 | 32.000 | 7.44 | 0.35 | 38.84 | 3.49 |
37 | 38 | 6.028146 | TGTCACATTTGCTCAAATATTGCT | 57.972 | 33.333 | 7.44 | 0.00 | 38.84 | 3.91 |
38 | 39 | 6.709145 | TTGTCACATTTGCTCAAATATTGC | 57.291 | 33.333 | 7.44 | 5.91 | 38.84 | 3.56 |
39 | 40 | 8.385111 | GGAATTGTCACATTTGCTCAAATATTG | 58.615 | 33.333 | 7.44 | 8.14 | 38.84 | 1.90 |
40 | 41 | 8.316214 | AGGAATTGTCACATTTGCTCAAATATT | 58.684 | 29.630 | 7.44 | 3.74 | 38.84 | 1.28 |
41 | 42 | 7.844009 | AGGAATTGTCACATTTGCTCAAATAT | 58.156 | 30.769 | 7.44 | 0.00 | 38.84 | 1.28 |
42 | 43 | 7.230849 | AGGAATTGTCACATTTGCTCAAATA | 57.769 | 32.000 | 7.44 | 0.00 | 38.84 | 1.40 |
43 | 44 | 6.105397 | AGGAATTGTCACATTTGCTCAAAT | 57.895 | 33.333 | 0.92 | 2.24 | 41.33 | 2.32 |
44 | 45 | 5.534207 | AGGAATTGTCACATTTGCTCAAA | 57.466 | 34.783 | 0.92 | 0.00 | 34.46 | 2.69 |
45 | 46 | 6.350361 | CCATAGGAATTGTCACATTTGCTCAA | 60.350 | 38.462 | 9.45 | 0.00 | 30.60 | 3.02 |
46 | 47 | 5.125900 | CCATAGGAATTGTCACATTTGCTCA | 59.874 | 40.000 | 9.45 | 0.00 | 30.60 | 4.26 |
47 | 48 | 5.357878 | TCCATAGGAATTGTCACATTTGCTC | 59.642 | 40.000 | 9.45 | 0.00 | 30.60 | 4.26 |
48 | 49 | 5.263599 | TCCATAGGAATTGTCACATTTGCT | 58.736 | 37.500 | 10.76 | 10.76 | 32.19 | 3.91 |
49 | 50 | 5.581126 | TCCATAGGAATTGTCACATTTGC | 57.419 | 39.130 | 0.00 | 0.00 | 0.00 | 3.68 |
50 | 51 | 7.337480 | TCATCCATAGGAATTGTCACATTTG | 57.663 | 36.000 | 0.00 | 0.00 | 34.34 | 2.32 |
51 | 52 | 7.959658 | TTCATCCATAGGAATTGTCACATTT | 57.040 | 32.000 | 0.00 | 0.00 | 34.34 | 2.32 |
52 | 53 | 7.959658 | TTTCATCCATAGGAATTGTCACATT | 57.040 | 32.000 | 0.00 | 0.00 | 34.34 | 2.71 |
53 | 54 | 7.415541 | CGTTTTCATCCATAGGAATTGTCACAT | 60.416 | 37.037 | 0.00 | 0.00 | 34.34 | 3.21 |
54 | 55 | 6.128035 | CGTTTTCATCCATAGGAATTGTCACA | 60.128 | 38.462 | 0.00 | 0.00 | 34.34 | 3.58 |
55 | 56 | 6.093495 | TCGTTTTCATCCATAGGAATTGTCAC | 59.907 | 38.462 | 0.00 | 0.00 | 34.34 | 3.67 |
56 | 57 | 6.176896 | TCGTTTTCATCCATAGGAATTGTCA | 58.823 | 36.000 | 0.00 | 0.00 | 34.34 | 3.58 |
57 | 58 | 6.238484 | CCTCGTTTTCATCCATAGGAATTGTC | 60.238 | 42.308 | 0.00 | 0.00 | 34.34 | 3.18 |
58 | 59 | 5.590259 | CCTCGTTTTCATCCATAGGAATTGT | 59.410 | 40.000 | 0.00 | 0.00 | 34.34 | 2.71 |
59 | 60 | 5.009010 | CCCTCGTTTTCATCCATAGGAATTG | 59.991 | 44.000 | 0.00 | 0.00 | 34.34 | 2.32 |
60 | 61 | 5.133221 | CCCTCGTTTTCATCCATAGGAATT | 58.867 | 41.667 | 0.00 | 0.00 | 34.34 | 2.17 |
61 | 62 | 4.446311 | CCCCTCGTTTTCATCCATAGGAAT | 60.446 | 45.833 | 0.00 | 0.00 | 34.34 | 3.01 |
62 | 63 | 3.118038 | CCCCTCGTTTTCATCCATAGGAA | 60.118 | 47.826 | 0.00 | 0.00 | 34.34 | 3.36 |
63 | 64 | 2.438021 | CCCCTCGTTTTCATCCATAGGA | 59.562 | 50.000 | 0.00 | 0.00 | 35.55 | 2.94 |
64 | 65 | 2.438021 | TCCCCTCGTTTTCATCCATAGG | 59.562 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
65 | 66 | 3.838244 | TCCCCTCGTTTTCATCCATAG | 57.162 | 47.619 | 0.00 | 0.00 | 0.00 | 2.23 |
66 | 67 | 3.181445 | CCATCCCCTCGTTTTCATCCATA | 60.181 | 47.826 | 0.00 | 0.00 | 0.00 | 2.74 |
67 | 68 | 2.423373 | CCATCCCCTCGTTTTCATCCAT | 60.423 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
68 | 69 | 1.064758 | CCATCCCCTCGTTTTCATCCA | 60.065 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
69 | 70 | 1.680338 | CCATCCCCTCGTTTTCATCC | 58.320 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
70 | 71 | 1.211949 | TCCCATCCCCTCGTTTTCATC | 59.788 | 52.381 | 0.00 | 0.00 | 0.00 | 2.92 |
71 | 72 | 1.212935 | CTCCCATCCCCTCGTTTTCAT | 59.787 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
72 | 73 | 0.618458 | CTCCCATCCCCTCGTTTTCA | 59.382 | 55.000 | 0.00 | 0.00 | 0.00 | 2.69 |
73 | 74 | 0.107165 | CCTCCCATCCCCTCGTTTTC | 60.107 | 60.000 | 0.00 | 0.00 | 0.00 | 2.29 |
74 | 75 | 0.549169 | TCCTCCCATCCCCTCGTTTT | 60.549 | 55.000 | 0.00 | 0.00 | 0.00 | 2.43 |
75 | 76 | 0.983378 | CTCCTCCCATCCCCTCGTTT | 60.983 | 60.000 | 0.00 | 0.00 | 0.00 | 3.60 |
76 | 77 | 1.383248 | CTCCTCCCATCCCCTCGTT | 60.383 | 63.158 | 0.00 | 0.00 | 0.00 | 3.85 |
77 | 78 | 1.669927 | ATCTCCTCCCATCCCCTCGT | 61.670 | 60.000 | 0.00 | 0.00 | 0.00 | 4.18 |
78 | 79 | 0.472734 | AATCTCCTCCCATCCCCTCG | 60.473 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
79 | 80 | 2.261729 | GTAATCTCCTCCCATCCCCTC | 58.738 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
80 | 81 | 1.132365 | GGTAATCTCCTCCCATCCCCT | 60.132 | 57.143 | 0.00 | 0.00 | 0.00 | 4.79 |
81 | 82 | 1.132365 | AGGTAATCTCCTCCCATCCCC | 60.132 | 57.143 | 0.00 | 0.00 | 31.32 | 4.81 |
82 | 83 | 2.424684 | AGGTAATCTCCTCCCATCCC | 57.575 | 55.000 | 0.00 | 0.00 | 31.32 | 3.85 |
83 | 84 | 4.287326 | CCTTAAGGTAATCTCCTCCCATCC | 59.713 | 50.000 | 13.83 | 0.00 | 36.74 | 3.51 |
84 | 85 | 4.287326 | CCCTTAAGGTAATCTCCTCCCATC | 59.713 | 50.000 | 20.22 | 0.00 | 36.74 | 3.51 |
85 | 86 | 4.077387 | TCCCTTAAGGTAATCTCCTCCCAT | 60.077 | 45.833 | 20.22 | 0.00 | 36.74 | 4.00 |
86 | 87 | 3.276578 | TCCCTTAAGGTAATCTCCTCCCA | 59.723 | 47.826 | 20.22 | 0.00 | 36.74 | 4.37 |
87 | 88 | 3.904965 | CTCCCTTAAGGTAATCTCCTCCC | 59.095 | 52.174 | 20.22 | 0.00 | 36.74 | 4.30 |
88 | 89 | 3.904965 | CCTCCCTTAAGGTAATCTCCTCC | 59.095 | 52.174 | 20.22 | 0.00 | 36.74 | 4.30 |
89 | 90 | 3.904965 | CCCTCCCTTAAGGTAATCTCCTC | 59.095 | 52.174 | 20.22 | 0.00 | 36.74 | 3.71 |
90 | 91 | 3.376555 | CCCCTCCCTTAAGGTAATCTCCT | 60.377 | 52.174 | 20.22 | 0.00 | 39.84 | 3.69 |
91 | 92 | 2.980379 | CCCCTCCCTTAAGGTAATCTCC | 59.020 | 54.545 | 20.22 | 0.00 | 36.75 | 3.71 |
92 | 93 | 3.666568 | ACCCCTCCCTTAAGGTAATCTC | 58.333 | 50.000 | 20.22 | 0.00 | 36.75 | 2.75 |
93 | 94 | 3.786450 | CAACCCCTCCCTTAAGGTAATCT | 59.214 | 47.826 | 20.22 | 0.00 | 36.75 | 2.40 |
94 | 95 | 3.117625 | CCAACCCCTCCCTTAAGGTAATC | 60.118 | 52.174 | 20.22 | 0.00 | 36.75 | 1.75 |
95 | 96 | 2.856864 | CCAACCCCTCCCTTAAGGTAAT | 59.143 | 50.000 | 20.22 | 0.00 | 36.75 | 1.89 |
96 | 97 | 2.281034 | CCAACCCCTCCCTTAAGGTAA | 58.719 | 52.381 | 20.22 | 7.17 | 36.75 | 2.85 |
97 | 98 | 1.975471 | CCAACCCCTCCCTTAAGGTA | 58.025 | 55.000 | 20.22 | 3.36 | 36.75 | 3.08 |
98 | 99 | 1.506907 | GCCAACCCCTCCCTTAAGGT | 61.507 | 60.000 | 20.22 | 0.00 | 36.75 | 3.50 |
99 | 100 | 1.214992 | AGCCAACCCCTCCCTTAAGG | 61.215 | 60.000 | 15.14 | 15.14 | 36.08 | 2.69 |
100 | 101 | 0.704664 | AAGCCAACCCCTCCCTTAAG | 59.295 | 55.000 | 0.00 | 0.00 | 0.00 | 1.85 |
101 | 102 | 0.702316 | GAAGCCAACCCCTCCCTTAA | 59.298 | 55.000 | 0.00 | 0.00 | 0.00 | 1.85 |
102 | 103 | 1.559065 | CGAAGCCAACCCCTCCCTTA | 61.559 | 60.000 | 0.00 | 0.00 | 0.00 | 2.69 |
103 | 104 | 2.907179 | CGAAGCCAACCCCTCCCTT | 61.907 | 63.158 | 0.00 | 0.00 | 0.00 | 3.95 |
104 | 105 | 3.330720 | CGAAGCCAACCCCTCCCT | 61.331 | 66.667 | 0.00 | 0.00 | 0.00 | 4.20 |
105 | 106 | 2.420466 | TTTCGAAGCCAACCCCTCCC | 62.420 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
106 | 107 | 0.323451 | ATTTCGAAGCCAACCCCTCC | 60.323 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
107 | 108 | 1.095600 | GATTTCGAAGCCAACCCCTC | 58.904 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
108 | 109 | 0.323451 | GGATTTCGAAGCCAACCCCT | 60.323 | 55.000 | 12.65 | 0.00 | 36.80 | 4.79 |
109 | 110 | 0.610785 | TGGATTTCGAAGCCAACCCC | 60.611 | 55.000 | 16.61 | 4.97 | 45.40 | 4.95 |
110 | 111 | 2.955609 | TGGATTTCGAAGCCAACCC | 58.044 | 52.632 | 16.61 | 6.13 | 45.40 | 4.11 |
114 | 115 | 0.672401 | GACCGTGGATTTCGAAGCCA | 60.672 | 55.000 | 15.40 | 15.40 | 46.37 | 4.75 |
115 | 116 | 0.672401 | TGACCGTGGATTTCGAAGCC | 60.672 | 55.000 | 11.10 | 11.10 | 37.50 | 4.35 |
116 | 117 | 1.153353 | TTGACCGTGGATTTCGAAGC | 58.847 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
117 | 118 | 4.630069 | AGTATTTGACCGTGGATTTCGAAG | 59.370 | 41.667 | 0.00 | 0.00 | 0.00 | 3.79 |
118 | 119 | 4.571919 | AGTATTTGACCGTGGATTTCGAA | 58.428 | 39.130 | 0.00 | 0.00 | 0.00 | 3.71 |
119 | 120 | 4.178540 | GAGTATTTGACCGTGGATTTCGA | 58.821 | 43.478 | 0.00 | 0.00 | 0.00 | 3.71 |
120 | 121 | 3.308866 | GGAGTATTTGACCGTGGATTTCG | 59.691 | 47.826 | 0.00 | 0.00 | 0.00 | 3.46 |
121 | 122 | 3.308866 | CGGAGTATTTGACCGTGGATTTC | 59.691 | 47.826 | 0.00 | 0.00 | 41.47 | 2.17 |
122 | 123 | 3.267483 | CGGAGTATTTGACCGTGGATTT | 58.733 | 45.455 | 0.00 | 0.00 | 41.47 | 2.17 |
123 | 124 | 2.419574 | CCGGAGTATTTGACCGTGGATT | 60.420 | 50.000 | 0.00 | 0.00 | 44.34 | 3.01 |
124 | 125 | 1.138266 | CCGGAGTATTTGACCGTGGAT | 59.862 | 52.381 | 0.00 | 0.00 | 44.34 | 3.41 |
125 | 126 | 0.533491 | CCGGAGTATTTGACCGTGGA | 59.467 | 55.000 | 0.00 | 0.00 | 44.34 | 4.02 |
126 | 127 | 0.533491 | TCCGGAGTATTTGACCGTGG | 59.467 | 55.000 | 0.00 | 0.00 | 44.34 | 4.94 |
127 | 128 | 2.596904 | ATCCGGAGTATTTGACCGTG | 57.403 | 50.000 | 11.34 | 0.00 | 44.34 | 4.94 |
128 | 129 | 3.267483 | CAAATCCGGAGTATTTGACCGT | 58.733 | 45.455 | 19.80 | 0.00 | 44.90 | 4.83 |
129 | 130 | 2.031683 | GCAAATCCGGAGTATTTGACCG | 59.968 | 50.000 | 25.96 | 6.49 | 44.90 | 4.79 |
130 | 131 | 3.013921 | TGCAAATCCGGAGTATTTGACC | 58.986 | 45.455 | 25.96 | 13.64 | 44.90 | 4.02 |
131 | 132 | 4.394920 | TCTTGCAAATCCGGAGTATTTGAC | 59.605 | 41.667 | 25.96 | 18.63 | 44.90 | 3.18 |
132 | 133 | 4.584874 | TCTTGCAAATCCGGAGTATTTGA | 58.415 | 39.130 | 25.96 | 12.61 | 44.90 | 2.69 |
133 | 134 | 4.963276 | TCTTGCAAATCCGGAGTATTTG | 57.037 | 40.909 | 20.06 | 20.06 | 44.90 | 2.32 |
134 | 135 | 6.152661 | TCAAATCTTGCAAATCCGGAGTATTT | 59.847 | 34.615 | 11.34 | 6.27 | 0.00 | 1.40 |
135 | 136 | 5.652014 | TCAAATCTTGCAAATCCGGAGTATT | 59.348 | 36.000 | 11.34 | 1.75 | 0.00 | 1.89 |
136 | 137 | 5.192927 | TCAAATCTTGCAAATCCGGAGTAT | 58.807 | 37.500 | 11.34 | 0.00 | 0.00 | 2.12 |
137 | 138 | 4.584874 | TCAAATCTTGCAAATCCGGAGTA | 58.415 | 39.130 | 11.34 | 0.00 | 0.00 | 2.59 |
138 | 139 | 3.420893 | TCAAATCTTGCAAATCCGGAGT | 58.579 | 40.909 | 11.34 | 3.58 | 0.00 | 3.85 |
139 | 140 | 3.691118 | TCTCAAATCTTGCAAATCCGGAG | 59.309 | 43.478 | 11.34 | 5.73 | 0.00 | 4.63 |
140 | 141 | 3.684908 | TCTCAAATCTTGCAAATCCGGA | 58.315 | 40.909 | 6.61 | 6.61 | 0.00 | 5.14 |
141 | 142 | 4.418392 | CTTCTCAAATCTTGCAAATCCGG | 58.582 | 43.478 | 0.00 | 0.00 | 0.00 | 5.14 |
142 | 143 | 4.156556 | TCCTTCTCAAATCTTGCAAATCCG | 59.843 | 41.667 | 0.00 | 0.00 | 0.00 | 4.18 |
143 | 144 | 5.649782 | TCCTTCTCAAATCTTGCAAATCC | 57.350 | 39.130 | 0.00 | 0.00 | 0.00 | 3.01 |
144 | 145 | 7.816031 | TCAAATCCTTCTCAAATCTTGCAAATC | 59.184 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
145 | 146 | 7.673180 | TCAAATCCTTCTCAAATCTTGCAAAT | 58.327 | 30.769 | 0.00 | 0.00 | 0.00 | 2.32 |
146 | 147 | 7.014518 | TCTCAAATCCTTCTCAAATCTTGCAAA | 59.985 | 33.333 | 0.00 | 0.00 | 0.00 | 3.68 |
147 | 148 | 6.491062 | TCTCAAATCCTTCTCAAATCTTGCAA | 59.509 | 34.615 | 0.00 | 0.00 | 0.00 | 4.08 |
148 | 149 | 6.005823 | TCTCAAATCCTTCTCAAATCTTGCA | 58.994 | 36.000 | 0.00 | 0.00 | 0.00 | 4.08 |
149 | 150 | 6.404513 | CCTCTCAAATCCTTCTCAAATCTTGC | 60.405 | 42.308 | 0.00 | 0.00 | 0.00 | 4.01 |
150 | 151 | 6.095160 | CCCTCTCAAATCCTTCTCAAATCTTG | 59.905 | 42.308 | 0.00 | 0.00 | 0.00 | 3.02 |
151 | 152 | 6.186234 | CCCTCTCAAATCCTTCTCAAATCTT | 58.814 | 40.000 | 0.00 | 0.00 | 0.00 | 2.40 |
152 | 153 | 5.339861 | CCCCTCTCAAATCCTTCTCAAATCT | 60.340 | 44.000 | 0.00 | 0.00 | 0.00 | 2.40 |
153 | 154 | 4.886489 | CCCCTCTCAAATCCTTCTCAAATC | 59.114 | 45.833 | 0.00 | 0.00 | 0.00 | 2.17 |
154 | 155 | 4.325658 | CCCCCTCTCAAATCCTTCTCAAAT | 60.326 | 45.833 | 0.00 | 0.00 | 0.00 | 2.32 |
155 | 156 | 3.010584 | CCCCCTCTCAAATCCTTCTCAAA | 59.989 | 47.826 | 0.00 | 0.00 | 0.00 | 2.69 |
156 | 157 | 2.578021 | CCCCCTCTCAAATCCTTCTCAA | 59.422 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
157 | 158 | 2.200081 | CCCCCTCTCAAATCCTTCTCA | 58.800 | 52.381 | 0.00 | 0.00 | 0.00 | 3.27 |
896 | 898 | 2.983725 | AAGGCAGCAGGTGTGGGTTC | 62.984 | 60.000 | 0.66 | 0.00 | 0.00 | 3.62 |
922 | 925 | 2.485426 | GGTAAACGGGCAGAGGTTTTAC | 59.515 | 50.000 | 0.00 | 0.00 | 37.52 | 2.01 |
937 | 942 | 2.418976 | GACCTCGCTGGAATTGGTAAAC | 59.581 | 50.000 | 1.32 | 0.00 | 39.71 | 2.01 |
960 | 965 | 0.109272 | CGCTGTTGTCGCTAGGAGAA | 60.109 | 55.000 | 0.00 | 0.00 | 0.00 | 2.87 |
963 | 968 | 1.211969 | GTCGCTGTTGTCGCTAGGA | 59.788 | 57.895 | 0.00 | 0.00 | 0.00 | 2.94 |
966 | 972 | 1.728074 | CGTGTCGCTGTTGTCGCTA | 60.728 | 57.895 | 0.00 | 0.00 | 0.00 | 4.26 |
973 | 980 | 1.081641 | CTCGTACCGTGTCGCTGTT | 60.082 | 57.895 | 0.00 | 0.00 | 0.00 | 3.16 |
976 | 983 | 3.324099 | CTGCTCGTACCGTGTCGCT | 62.324 | 63.158 | 0.00 | 0.00 | 0.00 | 4.93 |
983 | 990 | 1.068083 | ATGATGGCTGCTCGTACCG | 59.932 | 57.895 | 0.00 | 0.00 | 0.00 | 4.02 |
1018 | 1025 | 4.395583 | AACCTCGACGTCCGCGAC | 62.396 | 66.667 | 8.23 | 2.72 | 42.00 | 5.19 |
1116 | 1123 | 4.003788 | CCGTGCCCCGTGAAGAGT | 62.004 | 66.667 | 0.00 | 0.00 | 33.66 | 3.24 |
1118 | 1125 | 4.308458 | CACCGTGCCCCGTGAAGA | 62.308 | 66.667 | 0.00 | 0.00 | 33.66 | 2.87 |
1165 | 1172 | 0.836400 | TCGGCCTCAAAGTCCTCCTT | 60.836 | 55.000 | 0.00 | 0.00 | 33.79 | 3.36 |
1202 | 1209 | 2.044492 | AGGTCATAGTCCCTGGAGTCAA | 59.956 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1242 | 1249 | 3.366476 | CGTCGTCTTCCTTCTCATCAACT | 60.366 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
1247 | 1254 | 1.130749 | CGTCGTCGTCTTCCTTCTCAT | 59.869 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
1257 | 1264 | 2.160946 | GACTTCCTCGTCGTCGTCT | 58.839 | 57.895 | 1.33 | 0.00 | 38.33 | 4.18 |
1328 | 1335 | 8.611654 | ATTAAAAACTAGTCCAAGCGAACTAA | 57.388 | 30.769 | 0.00 | 0.00 | 0.00 | 2.24 |
1330 | 1337 | 8.665685 | CATATTAAAAACTAGTCCAAGCGAACT | 58.334 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
1357 | 1365 | 7.931407 | ACATCAATCGCTAAAGGTAATGATACA | 59.069 | 33.333 | 0.00 | 0.00 | 33.45 | 2.29 |
1381 | 1399 | 4.859304 | ACCAAGACGAATGTAGTACACA | 57.141 | 40.909 | 4.80 | 0.00 | 42.69 | 3.72 |
1382 | 1400 | 5.464389 | ACAAACCAAGACGAATGTAGTACAC | 59.536 | 40.000 | 4.80 | 0.00 | 0.00 | 2.90 |
1383 | 1401 | 5.603596 | ACAAACCAAGACGAATGTAGTACA | 58.396 | 37.500 | 5.24 | 5.24 | 0.00 | 2.90 |
1384 | 1402 | 6.535274 | AACAAACCAAGACGAATGTAGTAC | 57.465 | 37.500 | 0.00 | 0.00 | 0.00 | 2.73 |
1410 | 1428 | 6.736110 | ATTTGACCCAAAATATGATGGAGG | 57.264 | 37.500 | 8.30 | 0.00 | 39.12 | 4.30 |
1513 | 1592 | 3.089284 | CCCCCTCATGTTTTTAGGTCAC | 58.911 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
1565 | 1645 | 1.678728 | GGACCAATCGCACAATCTCCA | 60.679 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
1586 | 1666 | 1.671845 | TCGAACGACCAAACCCTTTTG | 59.328 | 47.619 | 0.00 | 0.00 | 41.71 | 2.44 |
1591 | 1671 | 0.519961 | CCAATCGAACGACCAAACCC | 59.480 | 55.000 | 0.00 | 0.00 | 0.00 | 4.11 |
1628 | 1713 | 1.820877 | GCCTTCCAATAGCATCCCCTG | 60.821 | 57.143 | 0.00 | 0.00 | 0.00 | 4.45 |
1634 | 1719 | 4.586001 | CCAAACATAGCCTTCCAATAGCAT | 59.414 | 41.667 | 0.00 | 0.00 | 0.00 | 3.79 |
1667 | 1753 | 6.071952 | GCACATCCAATCTAAAGAAACAGGAA | 60.072 | 38.462 | 0.00 | 0.00 | 0.00 | 3.36 |
1676 | 1762 | 6.938596 | TCCATGATAGCACATCCAATCTAAAG | 59.061 | 38.462 | 0.00 | 0.00 | 0.00 | 1.85 |
1709 | 1804 | 3.181437 | GGAAAAGGACTAACCCTTCACCA | 60.181 | 47.826 | 0.00 | 0.00 | 45.30 | 4.17 |
1723 | 1818 | 4.714308 | ACACAACAAAGGAATGGAAAAGGA | 59.286 | 37.500 | 0.00 | 0.00 | 0.00 | 3.36 |
1724 | 1819 | 5.022282 | ACACAACAAAGGAATGGAAAAGG | 57.978 | 39.130 | 0.00 | 0.00 | 0.00 | 3.11 |
1735 | 1832 | 0.306533 | CCGACCGAACACAACAAAGG | 59.693 | 55.000 | 0.00 | 0.00 | 0.00 | 3.11 |
1738 | 1835 | 1.538634 | CCTACCGACCGAACACAACAA | 60.539 | 52.381 | 0.00 | 0.00 | 0.00 | 2.83 |
1752 | 1849 | 1.663702 | CCGCGGAAATAGCCTACCG | 60.664 | 63.158 | 24.07 | 0.00 | 46.74 | 4.02 |
2070 | 3155 | 2.178912 | TGATTGGTCAAGTTCGGGTC | 57.821 | 50.000 | 0.00 | 0.00 | 0.00 | 4.46 |
2085 | 3181 | 5.535783 | TCACAATGAACACTGAACCATGATT | 59.464 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2161 | 3266 | 5.474876 | AGAGGGATCAACACTGACAAATTTC | 59.525 | 40.000 | 0.00 | 0.00 | 33.30 | 2.17 |
2162 | 3267 | 5.388654 | AGAGGGATCAACACTGACAAATTT | 58.611 | 37.500 | 0.00 | 0.00 | 33.30 | 1.82 |
2171 | 3276 | 4.225942 | TCAATGCTAAGAGGGATCAACACT | 59.774 | 41.667 | 0.00 | 0.00 | 33.40 | 3.55 |
2293 | 3398 | 1.679032 | GGGCGTTGACAGATAGCCTTT | 60.679 | 52.381 | 4.73 | 0.00 | 46.44 | 3.11 |
2298 | 3403 | 1.656652 | CAAGGGGCGTTGACAGATAG | 58.343 | 55.000 | 0.00 | 0.00 | 0.00 | 2.08 |
2322 | 3427 | 2.092753 | TCTCTGATTTCAGCATCCCACC | 60.093 | 50.000 | 2.60 | 0.00 | 43.46 | 4.61 |
2328 | 3433 | 4.347292 | TGCTAGGATCTCTGATTTCAGCAT | 59.653 | 41.667 | 2.60 | 0.00 | 43.46 | 3.79 |
2454 | 3562 | 1.882623 | CTGTTGGTTCCTCTGGAAAGC | 59.117 | 52.381 | 0.12 | 0.00 | 43.86 | 3.51 |
2478 | 3706 | 2.429971 | TGGTTTGATGCAAAGTCAGCAA | 59.570 | 40.909 | 0.00 | 0.00 | 46.27 | 3.91 |
2547 | 3823 | 7.665922 | TCCCTGGTCAGAATAGATATCCATAT | 58.334 | 38.462 | 0.00 | 0.00 | 0.00 | 1.78 |
2560 | 3836 | 3.858135 | AGAGTTACTTCCCTGGTCAGAA | 58.142 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
2584 | 3860 | 2.985456 | CCCAGGTCAGAGCAGGAC | 59.015 | 66.667 | 12.50 | 0.00 | 34.52 | 3.85 |
2586 | 3862 | 3.007920 | AGCCCAGGTCAGAGCAGG | 61.008 | 66.667 | 4.04 | 4.04 | 0.00 | 4.85 |
2597 | 3873 | 0.179000 | GTGTCATACTCCCAGCCCAG | 59.821 | 60.000 | 0.00 | 0.00 | 0.00 | 4.45 |
2620 | 3896 | 8.143193 | GGAGCAATGGATGATATATCTAGACTG | 58.857 | 40.741 | 13.79 | 5.81 | 0.00 | 3.51 |
2733 | 4240 | 4.764308 | TCCATGGTTCGAAATTGACATCAA | 59.236 | 37.500 | 12.58 | 0.00 | 40.51 | 2.57 |
2771 | 4278 | 2.067013 | CAGCTCATCCACGCTATCATG | 58.933 | 52.381 | 0.00 | 0.00 | 34.58 | 3.07 |
2807 | 4314 | 3.941483 | ACATCCCGAGTCACATCAAAATC | 59.059 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
2819 | 4326 | 2.107041 | TTGCCAACGACATCCCGAGT | 62.107 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
2891 | 4400 | 4.202419 | CCCGATATACAGGGTTTGAATCCA | 60.202 | 45.833 | 6.25 | 0.00 | 42.67 | 3.41 |
3012 | 4526 | 1.713078 | AGGGTGCTTTCCAATCTTCCT | 59.287 | 47.619 | 0.00 | 0.00 | 0.00 | 3.36 |
3083 | 4597 | 0.322546 | AAGAGAACCGGGATGCAACC | 60.323 | 55.000 | 6.32 | 4.00 | 0.00 | 3.77 |
3105 | 4621 | 6.099845 | AGACAACTAGGGAAATGGTCGATTAT | 59.900 | 38.462 | 0.00 | 0.00 | 0.00 | 1.28 |
3115 | 4631 | 5.765182 | CACAAAGACAGACAACTAGGGAAAT | 59.235 | 40.000 | 0.00 | 0.00 | 0.00 | 2.17 |
3203 | 4731 | 6.653526 | TGATGTTCACATTCAGAAATGGTT | 57.346 | 33.333 | 3.45 | 0.00 | 45.48 | 3.67 |
3463 | 5023 | 7.831753 | TGGTCTGTAAACTCAAAAATTGTGAA | 58.168 | 30.769 | 0.00 | 0.00 | 0.00 | 3.18 |
3484 | 5046 | 9.862585 | GTGTGTTTCAATTTGAATAATTTGGTC | 57.137 | 29.630 | 12.39 | 0.00 | 36.11 | 4.02 |
3511 | 5073 | 7.147742 | TGCTCTTTACTTCATTTGAACCCTTTT | 60.148 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
3512 | 5074 | 6.323739 | TGCTCTTTACTTCATTTGAACCCTTT | 59.676 | 34.615 | 0.00 | 0.00 | 0.00 | 3.11 |
3521 | 5083 | 8.784043 | ACTTTTATCGTGCTCTTTACTTCATTT | 58.216 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
3522 | 5084 | 8.324163 | ACTTTTATCGTGCTCTTTACTTCATT | 57.676 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
3523 | 5085 | 7.907214 | ACTTTTATCGTGCTCTTTACTTCAT | 57.093 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3524 | 5086 | 7.868922 | TGTACTTTTATCGTGCTCTTTACTTCA | 59.131 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
3525 | 5087 | 8.236084 | TGTACTTTTATCGTGCTCTTTACTTC | 57.764 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
3552 | 5119 | 9.138062 | CATTGTCATCTCTATAGCACTTCATAC | 57.862 | 37.037 | 0.00 | 0.00 | 0.00 | 2.39 |
3566 | 5133 | 5.169992 | TGTTGACCATCATTGTCATCTCT | 57.830 | 39.130 | 0.00 | 0.00 | 41.99 | 3.10 |
3573 | 5140 | 5.947566 | TCATGATCTTGTTGACCATCATTGT | 59.052 | 36.000 | 8.33 | 0.00 | 34.40 | 2.71 |
3576 | 5143 | 6.185511 | ACTTCATGATCTTGTTGACCATCAT | 58.814 | 36.000 | 8.33 | 0.00 | 36.59 | 2.45 |
3596 | 5163 | 8.290325 | AGAACCGAGAATTTCATACAAAACTTC | 58.710 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
3597 | 5164 | 8.166422 | AGAACCGAGAATTTCATACAAAACTT | 57.834 | 30.769 | 0.00 | 0.00 | 0.00 | 2.66 |
3598 | 5165 | 7.360101 | CGAGAACCGAGAATTTCATACAAAACT | 60.360 | 37.037 | 0.00 | 0.00 | 41.76 | 2.66 |
3600 | 5167 | 6.647481 | TCGAGAACCGAGAATTTCATACAAAA | 59.353 | 34.615 | 0.00 | 0.00 | 43.23 | 2.44 |
3601 | 5168 | 6.160684 | TCGAGAACCGAGAATTTCATACAAA | 58.839 | 36.000 | 0.00 | 0.00 | 43.23 | 2.83 |
3602 | 5169 | 5.716094 | TCGAGAACCGAGAATTTCATACAA | 58.284 | 37.500 | 0.00 | 0.00 | 43.23 | 2.41 |
3637 | 5207 | 4.873827 | TCTCTTTTACGGGAATCCATTTCG | 59.126 | 41.667 | 0.09 | 0.00 | 34.98 | 3.46 |
3761 | 5342 | 6.458232 | AGCTAGTGGTAGTTTCATAGTGAG | 57.542 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
3762 | 5343 | 6.039493 | GCTAGCTAGTGGTAGTTTCATAGTGA | 59.961 | 42.308 | 21.62 | 0.00 | 43.86 | 3.41 |
3763 | 5344 | 6.183360 | TGCTAGCTAGTGGTAGTTTCATAGTG | 60.183 | 42.308 | 21.62 | 0.00 | 43.86 | 2.74 |
3777 | 5359 | 5.220931 | GGATTGGATTTGTTGCTAGCTAGTG | 60.221 | 44.000 | 21.62 | 0.00 | 0.00 | 2.74 |
3834 | 5424 | 4.261741 | GCCAAATTCAGAGCACTTCAAGAA | 60.262 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
3838 | 5428 | 2.555325 | CAGCCAAATTCAGAGCACTTCA | 59.445 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.