Multiple sequence alignment - TraesCS7B01G324400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G324400 chr7B 100.000 3622 0 0 270 3891 577199784 577203405 0.000000e+00 6689.0
1 TraesCS7B01G324400 chr7B 86.096 712 81 9 1773 2475 509736882 509736180 0.000000e+00 750.0
2 TraesCS7B01G324400 chr7B 85.232 711 85 11 1773 2475 517933601 517932903 0.000000e+00 713.0
3 TraesCS7B01G324400 chr7B 82.962 628 96 8 2658 3282 517932543 517931924 1.220000e-154 556.0
4 TraesCS7B01G324400 chr7B 100.000 187 0 0 1 187 577199515 577199701 2.880000e-91 346.0
5 TraesCS7B01G324400 chr7B 99.465 187 1 0 1 187 577199834 577200020 1.340000e-89 340.0
6 TraesCS7B01G324400 chr7B 83.895 267 34 6 3377 3637 337574731 337574994 3.000000e-61 246.0
7 TraesCS7B01G324400 chr7B 83.333 126 11 2 1641 1757 517933884 517933760 1.480000e-19 108.0
8 TraesCS7B01G324400 chr7B 81.443 97 18 0 1387 1483 613185978 613186074 3.220000e-11 80.5
9 TraesCS7B01G324400 chr7D 90.285 1894 163 15 1491 3371 535510426 535512311 0.000000e+00 2459.0
10 TraesCS7B01G324400 chr7D 88.622 624 66 3 875 1493 535509744 535510367 0.000000e+00 754.0
11 TraesCS7B01G324400 chr7D 85.870 644 81 7 1832 2468 489302118 489301478 0.000000e+00 676.0
12 TraesCS7B01G324400 chr7D 88.847 529 33 10 3377 3891 535512348 535512864 9.180000e-176 627.0
13 TraesCS7B01G324400 chr7D 83.546 626 95 5 2658 3282 489301111 489300493 2.610000e-161 579.0
14 TraesCS7B01G324400 chr7D 87.755 441 44 8 2038 2470 484071647 484071209 1.250000e-139 507.0
15 TraesCS7B01G324400 chr7D 83.740 246 35 3 3397 3637 119741249 119741494 1.090000e-55 228.0
16 TraesCS7B01G324400 chr7D 82.482 137 14 4 1641 1768 484072169 484072034 1.140000e-20 111.0
17 TraesCS7B01G324400 chr7D 83.333 126 11 3 1641 1757 489311035 489310911 1.480000e-19 108.0
18 TraesCS7B01G324400 chr7D 81.651 109 19 1 1385 1493 605228921 605228814 5.350000e-14 89.8
19 TraesCS7B01G324400 chr7A 86.516 1817 218 13 1482 3282 616444351 616442546 0.000000e+00 1973.0
20 TraesCS7B01G324400 chr7A 86.304 1818 219 18 1482 3282 615785495 615787299 0.000000e+00 1951.0
21 TraesCS7B01G324400 chr7A 86.448 701 64 17 1779 2470 551542877 551542199 0.000000e+00 739.0
22 TraesCS7B01G324400 chr7A 83.573 627 92 10 875 1498 616445017 616444399 9.370000e-161 577.0
23 TraesCS7B01G324400 chr7A 82.958 622 101 5 875 1493 615784827 615785446 1.220000e-154 556.0
24 TraesCS7B01G324400 chr7A 84.956 452 35 11 3377 3814 618244144 618243712 9.990000e-116 427.0
25 TraesCS7B01G324400 chr7A 76.211 454 93 11 940 1386 591023112 591023557 3.910000e-55 226.0
26 TraesCS7B01G324400 chr7A 84.783 92 12 2 1678 1768 551543131 551543041 1.490000e-14 91.6
27 TraesCS7B01G324400 chr7A 94.444 54 3 0 3302 3355 618244243 618244190 2.490000e-12 84.2
28 TraesCS7B01G324400 chr2B 85.392 1595 208 18 1678 3258 142295828 142297411 0.000000e+00 1631.0
29 TraesCS7B01G324400 chr2B 98.339 602 10 0 270 871 708701634 708702235 0.000000e+00 1057.0
30 TraesCS7B01G324400 chr2B 98.017 605 11 1 270 874 699768748 699769351 0.000000e+00 1050.0
31 TraesCS7B01G324400 chr2B 99.465 187 1 0 1 187 699768798 699768984 1.340000e-89 340.0
32 TraesCS7B01G324400 chr2B 85.882 255 31 3 3385 3635 601177839 601178092 2.300000e-67 267.0
33 TraesCS7B01G324400 chr2D 85.725 1366 157 16 1482 2826 89468421 89469769 0.000000e+00 1408.0
34 TraesCS7B01G324400 chr2D 86.100 259 32 2 3377 3632 547154485 547154742 3.830000e-70 276.0
35 TraesCS7B01G324400 chr2D 83.969 262 38 2 3377 3635 511918801 511919061 8.350000e-62 248.0
36 TraesCS7B01G324400 chr2D 84.581 227 33 2 3371 3596 431928512 431928737 1.410000e-54 224.0
37 TraesCS7B01G324400 chr2D 82.464 211 33 3 875 1083 89439658 89439866 8.590000e-42 182.0
38 TraesCS7B01G324400 chr5B 98.680 606 8 0 270 875 423217362 423216757 0.000000e+00 1075.0
39 TraesCS7B01G324400 chr5B 99.465 187 1 0 1 187 336802940 336802754 1.340000e-89 340.0
40 TraesCS7B01G324400 chr5B 99.465 187 1 0 1 187 423217312 423217126 1.340000e-89 340.0
41 TraesCS7B01G324400 chr5B 99.465 187 1 0 1 187 524587245 524587431 1.340000e-89 340.0
42 TraesCS7B01G324400 chr5B 85.973 221 31 0 3376 3596 696724833 696725053 1.810000e-58 237.0
43 TraesCS7B01G324400 chr1B 98.512 605 9 0 270 874 686834328 686833724 0.000000e+00 1068.0
44 TraesCS7B01G324400 chr1B 97.690 606 13 1 270 874 659733663 659733058 0.000000e+00 1040.0
45 TraesCS7B01G324400 chr1B 97.360 606 16 0 270 875 326013795 326013190 0.000000e+00 1031.0
46 TraesCS7B01G324400 chr1B 99.465 187 1 0 1 187 686834278 686834092 1.340000e-89 340.0
47 TraesCS7B01G324400 chr2A 98.039 612 11 1 270 880 470629106 470628495 0.000000e+00 1062.0
48 TraesCS7B01G324400 chr5A 98.182 605 11 0 270 874 617983191 617982587 0.000000e+00 1057.0
49 TraesCS7B01G324400 chr5A 84.993 753 103 10 2509 3258 531401657 531402402 0.000000e+00 756.0
50 TraesCS7B01G324400 chr5A 99.465 187 1 0 1 187 617983141 617982955 1.340000e-89 340.0
51 TraesCS7B01G324400 chr6B 97.855 606 13 0 270 875 439446723 439447328 0.000000e+00 1048.0
52 TraesCS7B01G324400 chr6B 85.086 818 104 14 2469 3282 649740125 649739322 0.000000e+00 819.0
53 TraesCS7B01G324400 chr6B 85.525 753 99 9 2509 3258 695810231 695809486 0.000000e+00 778.0
54 TraesCS7B01G324400 chr6B 82.035 629 98 11 2658 3281 121431948 121431330 4.460000e-144 521.0
55 TraesCS7B01G324400 chr6B 99.465 187 1 0 1 187 439446773 439446959 1.340000e-89 340.0
56 TraesCS7B01G324400 chr6B 75.191 524 113 13 875 1387 649834569 649834052 8.410000e-57 231.0
57 TraesCS7B01G324400 chr6D 85.732 813 104 9 2473 3282 430751281 430750478 0.000000e+00 848.0
58 TraesCS7B01G324400 chr6D 85.695 755 94 13 2509 3258 457256361 457255616 0.000000e+00 784.0
59 TraesCS7B01G324400 chr6D 82.669 727 84 26 1771 2475 430845932 430845226 1.200000e-169 606.0
60 TraesCS7B01G324400 chr6D 83.914 603 89 4 2658 3258 430844842 430844246 1.570000e-158 569.0
61 TraesCS7B01G324400 chr6D 82.667 600 90 11 2660 3253 50180549 50181140 1.600000e-143 520.0
62 TraesCS7B01G324400 chr6D 76.573 572 91 26 926 1493 430752065 430751533 1.380000e-69 274.0
63 TraesCS7B01G324400 chr6D 75.095 526 110 14 875 1387 430847601 430847084 3.910000e-55 226.0
64 TraesCS7B01G324400 chr6D 82.609 207 34 2 2509 2714 50180341 50180546 8.590000e-42 182.0
65 TraesCS7B01G324400 chr6D 82.000 100 17 1 1385 1484 97304702 97304800 2.490000e-12 84.2
66 TraesCS7B01G324400 chr6A 85.259 753 101 9 2509 3258 604192813 604192068 0.000000e+00 767.0
67 TraesCS7B01G324400 chr6A 85.075 603 88 2 2658 3258 577722570 577721968 7.150000e-172 614.0
68 TraesCS7B01G324400 chr6A 80.952 630 104 13 2658 3281 64907704 64907085 5.850000e-133 484.0
69 TraesCS7B01G324400 chr6A 99.465 187 1 0 1 187 157648258 157648072 1.340000e-89 340.0
70 TraesCS7B01G324400 chr6A 84.426 244 35 2 3387 3627 503604102 503604345 1.810000e-58 237.0
71 TraesCS7B01G324400 chr6A 83.607 244 37 2 3387 3627 503525376 503525619 3.910000e-55 226.0
72 TraesCS7B01G324400 chr6A 83.333 246 37 3 3390 3632 503487899 503488143 1.410000e-54 224.0
73 TraesCS7B01G324400 chr4A 84.711 242 34 1 3389 3627 685343447 685343688 5.020000e-59 239.0
74 TraesCS7B01G324400 chr4D 84.711 242 32 4 3395 3632 352290332 352290092 1.810000e-58 237.0
75 TraesCS7B01G324400 chr4D 81.328 241 37 4 3390 3627 16726510 16726745 5.130000e-44 189.0
76 TraesCS7B01G324400 chr4D 83.575 207 22 1 3390 3596 16671457 16671651 2.390000e-42 183.0
77 TraesCS7B01G324400 chr4D 80.583 103 19 1 1382 1484 488804235 488804134 1.160000e-10 78.7
78 TraesCS7B01G324400 chr4D 94.286 35 1 1 3404 3438 40409516 40409549 7.000000e-03 52.8
79 TraesCS7B01G324400 chr3B 83.794 253 36 3 3389 3637 492571798 492572049 6.500000e-58 235.0
80 TraesCS7B01G324400 chr3B 84.211 247 31 5 3390 3631 652480951 652481194 2.340000e-57 233.0
81 TraesCS7B01G324400 chr3D 82.812 256 39 3 3377 3631 490300111 490300362 1.410000e-54 224.0
82 TraesCS7B01G324400 chr3D 80.800 250 40 4 3388 3631 171131533 171131286 5.130000e-44 189.0
83 TraesCS7B01G324400 chr1A 88.462 182 21 0 3389 3570 387816963 387817144 1.820000e-53 220.0
84 TraesCS7B01G324400 chr1D 86.667 195 24 2 3377 3570 308448602 308448795 8.470000e-52 215.0
85 TraesCS7B01G324400 chr1D 83.957 187 27 3 3389 3573 291116165 291116350 4.000000e-40 176.0
86 TraesCS7B01G324400 chr5D 79.104 268 30 12 3389 3631 67346464 67346730 1.120000e-35 161.0
87 TraesCS7B01G324400 chr5D 83.465 127 19 2 3377 3502 448198823 448198948 2.460000e-22 117.0
88 TraesCS7B01G324400 chr5D 80.531 113 15 6 1385 1493 84326551 84326660 3.220000e-11 80.5
89 TraesCS7B01G324400 chr4B 82.171 129 22 1 3395 3523 656897741 656897614 4.110000e-20 110.0
90 TraesCS7B01G324400 chr4B 85.938 64 7 2 3404 3466 58974986 58975048 2.510000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G324400 chr7B 577199515 577203405 3890 False 2458.333333 6689 99.821667 1 3891 3 chr7B.!!$F3 3890
1 TraesCS7B01G324400 chr7B 509736180 509736882 702 True 750.000000 750 86.096000 1773 2475 1 chr7B.!!$R1 702
2 TraesCS7B01G324400 chr7B 517931924 517933884 1960 True 459.000000 713 83.842333 1641 3282 3 chr7B.!!$R2 1641
3 TraesCS7B01G324400 chr7D 535509744 535512864 3120 False 1280.000000 2459 89.251333 875 3891 3 chr7D.!!$F2 3016
4 TraesCS7B01G324400 chr7D 489300493 489302118 1625 True 627.500000 676 84.708000 1832 3282 2 chr7D.!!$R4 1450
5 TraesCS7B01G324400 chr7D 484071209 484072169 960 True 309.000000 507 85.118500 1641 2470 2 chr7D.!!$R3 829
6 TraesCS7B01G324400 chr7A 616442546 616445017 2471 True 1275.000000 1973 85.044500 875 3282 2 chr7A.!!$R2 2407
7 TraesCS7B01G324400 chr7A 615784827 615787299 2472 False 1253.500000 1951 84.631000 875 3282 2 chr7A.!!$F2 2407
8 TraesCS7B01G324400 chr7A 551542199 551543131 932 True 415.300000 739 85.615500 1678 2470 2 chr7A.!!$R1 792
9 TraesCS7B01G324400 chr7A 618243712 618244243 531 True 255.600000 427 89.700000 3302 3814 2 chr7A.!!$R3 512
10 TraesCS7B01G324400 chr2B 142295828 142297411 1583 False 1631.000000 1631 85.392000 1678 3258 1 chr2B.!!$F1 1580
11 TraesCS7B01G324400 chr2B 708701634 708702235 601 False 1057.000000 1057 98.339000 270 871 1 chr2B.!!$F3 601
12 TraesCS7B01G324400 chr2B 699768748 699769351 603 False 695.000000 1050 98.741000 1 874 2 chr2B.!!$F4 873
13 TraesCS7B01G324400 chr2D 89468421 89469769 1348 False 1408.000000 1408 85.725000 1482 2826 1 chr2D.!!$F2 1344
14 TraesCS7B01G324400 chr5B 423216757 423217362 605 True 707.500000 1075 99.072500 1 875 2 chr5B.!!$R2 874
15 TraesCS7B01G324400 chr1B 659733058 659733663 605 True 1040.000000 1040 97.690000 270 874 1 chr1B.!!$R2 604
16 TraesCS7B01G324400 chr1B 326013190 326013795 605 True 1031.000000 1031 97.360000 270 875 1 chr1B.!!$R1 605
17 TraesCS7B01G324400 chr1B 686833724 686834328 604 True 704.000000 1068 98.988500 1 874 2 chr1B.!!$R3 873
18 TraesCS7B01G324400 chr2A 470628495 470629106 611 True 1062.000000 1062 98.039000 270 880 1 chr2A.!!$R1 610
19 TraesCS7B01G324400 chr5A 531401657 531402402 745 False 756.000000 756 84.993000 2509 3258 1 chr5A.!!$F1 749
20 TraesCS7B01G324400 chr5A 617982587 617983191 604 True 698.500000 1057 98.823500 1 874 2 chr5A.!!$R1 873
21 TraesCS7B01G324400 chr6B 649739322 649740125 803 True 819.000000 819 85.086000 2469 3282 1 chr6B.!!$R2 813
22 TraesCS7B01G324400 chr6B 695809486 695810231 745 True 778.000000 778 85.525000 2509 3258 1 chr6B.!!$R4 749
23 TraesCS7B01G324400 chr6B 439446723 439447328 605 False 694.000000 1048 98.660000 1 875 2 chr6B.!!$F1 874
24 TraesCS7B01G324400 chr6B 121431330 121431948 618 True 521.000000 521 82.035000 2658 3281 1 chr6B.!!$R1 623
25 TraesCS7B01G324400 chr6B 649834052 649834569 517 True 231.000000 231 75.191000 875 1387 1 chr6B.!!$R3 512
26 TraesCS7B01G324400 chr6D 457255616 457256361 745 True 784.000000 784 85.695000 2509 3258 1 chr6D.!!$R1 749
27 TraesCS7B01G324400 chr6D 430750478 430752065 1587 True 561.000000 848 81.152500 926 3282 2 chr6D.!!$R2 2356
28 TraesCS7B01G324400 chr6D 430844246 430847601 3355 True 467.000000 606 80.559333 875 3258 3 chr6D.!!$R3 2383
29 TraesCS7B01G324400 chr6D 50180341 50181140 799 False 351.000000 520 82.638000 2509 3253 2 chr6D.!!$F2 744
30 TraesCS7B01G324400 chr6A 604192068 604192813 745 True 767.000000 767 85.259000 2509 3258 1 chr6A.!!$R4 749
31 TraesCS7B01G324400 chr6A 577721968 577722570 602 True 614.000000 614 85.075000 2658 3258 1 chr6A.!!$R3 600
32 TraesCS7B01G324400 chr6A 64907085 64907704 619 True 484.000000 484 80.952000 2658 3281 1 chr6A.!!$R1 623


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
92 93 0.107165 GAAAACGAGGGGATGGGAGG 60.107 60.0 0.00 0.00 0.00 4.30 F
130 131 0.168128 GGTTGGCTTCGAAATCCACG 59.832 55.0 15.89 0.00 0.00 4.94 F
131 132 0.168128 GTTGGCTTCGAAATCCACGG 59.832 55.0 15.89 0.00 0.00 4.94 F
132 133 0.250553 TTGGCTTCGAAATCCACGGT 60.251 50.0 15.89 0.00 0.00 4.83 F
973 980 0.331954 AGGTCCTTCTCCTAGCGACA 59.668 55.0 0.00 0.00 33.04 4.35 F
1030 1037 0.795735 AACATTAGTCGCGGACGTCG 60.796 55.0 9.92 6.26 41.18 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1735 1832 0.306533 CCGACCGAACACAACAAAGG 59.693 55.000 0.00 0.0 0.00 3.11 R
1738 1835 1.538634 CCTACCGACCGAACACAACAA 60.539 52.381 0.00 0.0 0.00 2.83 R
1752 1849 1.663702 CCGCGGAAATAGCCTACCG 60.664 63.158 24.07 0.0 46.74 4.02 R
2070 3155 2.178912 TGATTGGTCAAGTTCGGGTC 57.821 50.000 0.00 0.0 0.00 4.46 R
2597 3873 0.179000 GTGTCATACTCCCAGCCCAG 59.821 60.000 0.00 0.0 0.00 4.45 R
3012 4526 1.713078 AGGGTGCTTTCCAATCTTCCT 59.287 47.619 0.00 0.0 0.00 3.36 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.452078 TGCAAATCCAAGTCAAAACTAGG 57.548 39.130 0.00 0.00 33.48 3.02
23 24 4.280677 TGCAAATCCAAGTCAAAACTAGGG 59.719 41.667 0.00 0.00 33.48 3.53
24 25 4.280929 GCAAATCCAAGTCAAAACTAGGGT 59.719 41.667 0.00 0.00 33.48 4.34
25 26 5.221441 GCAAATCCAAGTCAAAACTAGGGTT 60.221 40.000 0.00 0.00 33.48 4.11
26 27 6.685368 GCAAATCCAAGTCAAAACTAGGGTTT 60.685 38.462 0.00 0.00 46.27 3.27
27 28 6.650427 AATCCAAGTCAAAACTAGGGTTTC 57.350 37.500 0.00 0.00 43.90 2.78
28 29 4.466827 TCCAAGTCAAAACTAGGGTTTCC 58.533 43.478 0.00 0.00 43.90 3.13
29 30 3.572682 CCAAGTCAAAACTAGGGTTTCCC 59.427 47.826 0.00 0.00 43.90 3.97
30 31 3.572682 CAAGTCAAAACTAGGGTTTCCCC 59.427 47.826 0.71 0.00 43.90 4.81
31 32 3.437491 AAGTCAAAACTAGGGTTTCCCCC 60.437 47.826 0.71 0.00 43.37 5.40
32 33 5.940301 AAGTCAAAACTAGGGTTTCCCCCA 61.940 45.833 0.71 0.00 45.89 4.96
33 34 7.365168 AAGTCAAAACTAGGGTTTCCCCCAA 62.365 44.000 0.71 0.00 45.89 4.12
34 35 8.756701 AAGTCAAAACTAGGGTTTCCCCCAAA 62.757 42.308 0.71 0.00 45.89 3.28
40 41 3.757836 GGTTTCCCCCAAACTAGCA 57.242 52.632 0.00 0.00 43.63 3.49
41 42 2.003937 GGTTTCCCCCAAACTAGCAA 57.996 50.000 0.00 0.00 43.63 3.91
42 43 2.536066 GGTTTCCCCCAAACTAGCAAT 58.464 47.619 0.00 0.00 43.63 3.56
43 44 3.703921 GGTTTCCCCCAAACTAGCAATA 58.296 45.455 0.00 0.00 43.63 1.90
44 45 4.286707 GGTTTCCCCCAAACTAGCAATAT 58.713 43.478 0.00 0.00 43.63 1.28
45 46 4.714802 GGTTTCCCCCAAACTAGCAATATT 59.285 41.667 0.00 0.00 43.63 1.28
46 47 5.188948 GGTTTCCCCCAAACTAGCAATATTT 59.811 40.000 0.00 0.00 43.63 1.40
47 48 5.930837 TTCCCCCAAACTAGCAATATTTG 57.069 39.130 0.00 0.00 33.90 2.32
48 49 5.199982 TCCCCCAAACTAGCAATATTTGA 57.800 39.130 4.74 0.00 35.73 2.69
49 50 5.200483 TCCCCCAAACTAGCAATATTTGAG 58.800 41.667 4.74 0.00 35.73 3.02
50 51 4.202151 CCCCCAAACTAGCAATATTTGAGC 60.202 45.833 4.74 0.00 35.73 4.26
51 52 4.402155 CCCCAAACTAGCAATATTTGAGCA 59.598 41.667 4.74 0.00 35.73 4.26
52 53 5.105392 CCCCAAACTAGCAATATTTGAGCAA 60.105 40.000 4.74 0.00 35.73 3.91
53 54 6.397272 CCCAAACTAGCAATATTTGAGCAAA 58.603 36.000 4.74 0.00 35.73 3.68
54 55 7.043565 CCCAAACTAGCAATATTTGAGCAAAT 58.956 34.615 12.51 12.51 42.95 2.32
55 56 7.010738 CCCAAACTAGCAATATTTGAGCAAATG 59.989 37.037 16.45 5.03 40.83 2.32
56 57 7.546667 CCAAACTAGCAATATTTGAGCAAATGT 59.453 33.333 16.45 8.68 40.83 2.71
57 58 8.377681 CAAACTAGCAATATTTGAGCAAATGTG 58.622 33.333 16.45 14.50 40.83 3.21
58 59 7.395190 ACTAGCAATATTTGAGCAAATGTGA 57.605 32.000 16.45 0.00 40.83 3.58
59 60 7.253422 ACTAGCAATATTTGAGCAAATGTGAC 58.747 34.615 16.45 7.57 40.83 3.67
60 61 6.028146 AGCAATATTTGAGCAAATGTGACA 57.972 33.333 16.45 0.00 40.83 3.58
61 62 6.457355 AGCAATATTTGAGCAAATGTGACAA 58.543 32.000 16.45 0.00 40.83 3.18
62 63 7.101054 AGCAATATTTGAGCAAATGTGACAAT 58.899 30.769 16.45 0.95 40.83 2.71
63 64 7.604927 AGCAATATTTGAGCAAATGTGACAATT 59.395 29.630 16.45 6.24 40.83 2.32
64 65 7.901377 GCAATATTTGAGCAAATGTGACAATTC 59.099 33.333 16.45 1.06 40.83 2.17
65 66 8.385111 CAATATTTGAGCAAATGTGACAATTCC 58.615 33.333 16.45 0.00 40.83 3.01
66 67 5.534207 TTTGAGCAAATGTGACAATTCCT 57.466 34.783 0.00 0.00 0.00 3.36
67 68 6.647334 TTTGAGCAAATGTGACAATTCCTA 57.353 33.333 0.00 0.00 0.00 2.94
68 69 6.839124 TTGAGCAAATGTGACAATTCCTAT 57.161 33.333 0.00 0.00 0.00 2.57
69 70 6.198650 TGAGCAAATGTGACAATTCCTATG 57.801 37.500 0.00 0.00 0.00 2.23
70 71 5.125900 TGAGCAAATGTGACAATTCCTATGG 59.874 40.000 0.00 0.00 0.00 2.74
71 72 5.263599 AGCAAATGTGACAATTCCTATGGA 58.736 37.500 0.00 0.00 0.00 3.41
72 73 5.895534 AGCAAATGTGACAATTCCTATGGAT 59.104 36.000 0.00 0.00 0.00 3.41
73 74 5.981315 GCAAATGTGACAATTCCTATGGATG 59.019 40.000 0.00 0.00 0.00 3.51
74 75 6.183360 GCAAATGTGACAATTCCTATGGATGA 60.183 38.462 0.00 0.00 0.00 2.92
75 76 7.631161 GCAAATGTGACAATTCCTATGGATGAA 60.631 37.037 0.00 0.00 0.00 2.57
76 77 7.959658 AATGTGACAATTCCTATGGATGAAA 57.040 32.000 0.00 0.00 0.00 2.69
77 78 7.959658 ATGTGACAATTCCTATGGATGAAAA 57.040 32.000 0.00 0.00 0.00 2.29
78 79 7.156876 TGTGACAATTCCTATGGATGAAAAC 57.843 36.000 0.00 0.00 0.00 2.43
79 80 6.128035 TGTGACAATTCCTATGGATGAAAACG 60.128 38.462 0.00 0.00 0.00 3.60
80 81 6.093495 GTGACAATTCCTATGGATGAAAACGA 59.907 38.462 0.00 0.00 0.00 3.85
81 82 6.316140 TGACAATTCCTATGGATGAAAACGAG 59.684 38.462 0.00 0.00 0.00 4.18
82 83 5.590259 ACAATTCCTATGGATGAAAACGAGG 59.410 40.000 0.00 0.00 0.00 4.63
83 84 3.838244 TCCTATGGATGAAAACGAGGG 57.162 47.619 0.00 0.00 0.00 4.30
84 85 2.438021 TCCTATGGATGAAAACGAGGGG 59.562 50.000 0.00 0.00 0.00 4.79
85 86 2.438021 CCTATGGATGAAAACGAGGGGA 59.562 50.000 0.00 0.00 0.00 4.81
86 87 3.073062 CCTATGGATGAAAACGAGGGGAT 59.927 47.826 0.00 0.00 0.00 3.85
87 88 2.418368 TGGATGAAAACGAGGGGATG 57.582 50.000 0.00 0.00 0.00 3.51
88 89 1.064758 TGGATGAAAACGAGGGGATGG 60.065 52.381 0.00 0.00 0.00 3.51
89 90 1.680338 GATGAAAACGAGGGGATGGG 58.320 55.000 0.00 0.00 0.00 4.00
90 91 1.211949 GATGAAAACGAGGGGATGGGA 59.788 52.381 0.00 0.00 0.00 4.37
91 92 0.618458 TGAAAACGAGGGGATGGGAG 59.382 55.000 0.00 0.00 0.00 4.30
92 93 0.107165 GAAAACGAGGGGATGGGAGG 60.107 60.000 0.00 0.00 0.00 4.30
93 94 0.549169 AAAACGAGGGGATGGGAGGA 60.549 55.000 0.00 0.00 0.00 3.71
94 95 0.983378 AAACGAGGGGATGGGAGGAG 60.983 60.000 0.00 0.00 0.00 3.69
95 96 1.886730 AACGAGGGGATGGGAGGAGA 61.887 60.000 0.00 0.00 0.00 3.71
96 97 1.157276 CGAGGGGATGGGAGGAGAT 59.843 63.158 0.00 0.00 0.00 2.75
97 98 0.472734 CGAGGGGATGGGAGGAGATT 60.473 60.000 0.00 0.00 0.00 2.40
98 99 1.203187 CGAGGGGATGGGAGGAGATTA 60.203 57.143 0.00 0.00 0.00 1.75
99 100 2.261729 GAGGGGATGGGAGGAGATTAC 58.738 57.143 0.00 0.00 0.00 1.89
100 101 1.132365 AGGGGATGGGAGGAGATTACC 60.132 57.143 0.00 0.00 0.00 2.85
101 102 1.132365 GGGGATGGGAGGAGATTACCT 60.132 57.143 0.00 0.00 43.64 3.08
102 103 2.700540 GGGGATGGGAGGAGATTACCTT 60.701 54.545 0.00 0.00 40.73 3.50
103 104 3.441054 GGGGATGGGAGGAGATTACCTTA 60.441 52.174 0.00 0.00 40.73 2.69
104 105 4.240323 GGGATGGGAGGAGATTACCTTAA 58.760 47.826 0.00 0.00 40.73 1.85
105 106 4.287326 GGGATGGGAGGAGATTACCTTAAG 59.713 50.000 0.00 0.00 40.73 1.85
106 107 4.287326 GGATGGGAGGAGATTACCTTAAGG 59.713 50.000 20.42 20.42 40.73 2.69
107 108 3.665443 TGGGAGGAGATTACCTTAAGGG 58.335 50.000 25.31 7.85 40.73 3.95
108 109 3.276578 TGGGAGGAGATTACCTTAAGGGA 59.723 47.826 25.31 15.27 40.73 4.20
109 110 3.904965 GGGAGGAGATTACCTTAAGGGAG 59.095 52.174 25.31 0.91 40.73 4.30
110 111 3.904965 GGAGGAGATTACCTTAAGGGAGG 59.095 52.174 25.31 1.03 40.73 4.30
111 112 3.904965 GAGGAGATTACCTTAAGGGAGGG 59.095 52.174 25.31 0.97 41.31 4.30
112 113 2.980379 GGAGATTACCTTAAGGGAGGGG 59.020 54.545 25.31 0.19 41.31 4.79
113 114 3.635531 GGAGATTACCTTAAGGGAGGGGT 60.636 52.174 25.31 6.76 41.31 4.95
114 115 4.045736 GAGATTACCTTAAGGGAGGGGTT 58.954 47.826 25.31 5.15 41.31 4.11
115 116 3.786450 AGATTACCTTAAGGGAGGGGTTG 59.214 47.826 25.31 0.00 41.31 3.77
116 117 1.975471 TACCTTAAGGGAGGGGTTGG 58.025 55.000 25.31 0.00 41.31 3.77
117 118 1.306633 CCTTAAGGGAGGGGTTGGC 59.693 63.158 14.25 0.00 37.23 4.52
118 119 1.214992 CCTTAAGGGAGGGGTTGGCT 61.215 60.000 14.25 0.00 37.23 4.75
119 120 0.704664 CTTAAGGGAGGGGTTGGCTT 59.295 55.000 0.00 0.00 0.00 4.35
120 121 0.702316 TTAAGGGAGGGGTTGGCTTC 59.298 55.000 0.00 0.00 0.00 3.86
121 122 1.559065 TAAGGGAGGGGTTGGCTTCG 61.559 60.000 0.00 0.00 0.00 3.79
122 123 3.327404 GGGAGGGGTTGGCTTCGA 61.327 66.667 0.00 0.00 0.00 3.71
123 124 2.754375 GGAGGGGTTGGCTTCGAA 59.246 61.111 0.00 0.00 0.00 3.71
124 125 1.074248 GGAGGGGTTGGCTTCGAAA 59.926 57.895 0.00 0.00 0.00 3.46
125 126 0.323451 GGAGGGGTTGGCTTCGAAAT 60.323 55.000 0.00 0.00 0.00 2.17
126 127 1.095600 GAGGGGTTGGCTTCGAAATC 58.904 55.000 0.00 0.00 0.00 2.17
127 128 0.323451 AGGGGTTGGCTTCGAAATCC 60.323 55.000 0.00 4.20 0.00 3.01
128 129 0.610785 GGGGTTGGCTTCGAAATCCA 60.611 55.000 13.11 13.11 0.00 3.41
129 130 0.526211 GGGTTGGCTTCGAAATCCAC 59.474 55.000 15.89 11.75 0.00 4.02
130 131 0.168128 GGTTGGCTTCGAAATCCACG 59.832 55.000 15.89 0.00 0.00 4.94
131 132 0.168128 GTTGGCTTCGAAATCCACGG 59.832 55.000 15.89 0.00 0.00 4.94
132 133 0.250553 TTGGCTTCGAAATCCACGGT 60.251 50.000 15.89 0.00 0.00 4.83
133 134 0.672401 TGGCTTCGAAATCCACGGTC 60.672 55.000 13.11 0.00 0.00 4.79
134 135 0.672401 GGCTTCGAAATCCACGGTCA 60.672 55.000 10.32 0.00 0.00 4.02
135 136 1.153353 GCTTCGAAATCCACGGTCAA 58.847 50.000 0.00 0.00 0.00 3.18
136 137 1.533731 GCTTCGAAATCCACGGTCAAA 59.466 47.619 0.00 0.00 0.00 2.69
137 138 2.161609 GCTTCGAAATCCACGGTCAAAT 59.838 45.455 0.00 0.00 0.00 2.32
138 139 3.372822 GCTTCGAAATCCACGGTCAAATA 59.627 43.478 0.00 0.00 0.00 1.40
139 140 4.726876 GCTTCGAAATCCACGGTCAAATAC 60.727 45.833 0.00 0.00 0.00 1.89
140 141 4.196626 TCGAAATCCACGGTCAAATACT 57.803 40.909 0.00 0.00 0.00 2.12
141 142 4.178540 TCGAAATCCACGGTCAAATACTC 58.821 43.478 0.00 0.00 0.00 2.59
142 143 3.308866 CGAAATCCACGGTCAAATACTCC 59.691 47.826 0.00 0.00 0.00 3.85
149 150 3.944422 CGGTCAAATACTCCGGATTTG 57.056 47.619 18.83 18.83 42.94 2.32
150 151 2.031683 CGGTCAAATACTCCGGATTTGC 59.968 50.000 19.72 15.29 41.86 3.68
151 152 3.013921 GGTCAAATACTCCGGATTTGCA 58.986 45.455 19.72 9.45 41.86 4.08
152 153 3.442273 GGTCAAATACTCCGGATTTGCAA 59.558 43.478 19.72 0.00 41.86 4.08
153 154 4.438744 GGTCAAATACTCCGGATTTGCAAG 60.439 45.833 19.72 3.87 41.86 4.01
154 155 4.394920 GTCAAATACTCCGGATTTGCAAGA 59.605 41.667 19.72 5.52 41.86 3.02
155 156 5.066505 GTCAAATACTCCGGATTTGCAAGAT 59.933 40.000 19.72 0.00 41.86 2.40
156 157 5.652014 TCAAATACTCCGGATTTGCAAGATT 59.348 36.000 19.72 2.50 41.86 2.40
157 158 6.152661 TCAAATACTCCGGATTTGCAAGATTT 59.847 34.615 19.72 7.81 41.86 2.17
158 159 3.855689 ACTCCGGATTTGCAAGATTTG 57.144 42.857 3.57 0.00 0.00 2.32
159 160 3.420893 ACTCCGGATTTGCAAGATTTGA 58.579 40.909 3.57 0.00 0.00 2.69
160 161 3.441572 ACTCCGGATTTGCAAGATTTGAG 59.558 43.478 3.57 7.44 0.00 3.02
161 162 3.684908 TCCGGATTTGCAAGATTTGAGA 58.315 40.909 0.00 0.00 0.00 3.27
162 163 4.078537 TCCGGATTTGCAAGATTTGAGAA 58.921 39.130 0.00 0.00 0.00 2.87
163 164 4.156556 TCCGGATTTGCAAGATTTGAGAAG 59.843 41.667 0.00 0.00 0.00 2.85
164 165 4.418392 CGGATTTGCAAGATTTGAGAAGG 58.582 43.478 0.00 0.00 0.00 3.46
165 166 4.156556 CGGATTTGCAAGATTTGAGAAGGA 59.843 41.667 0.00 0.00 0.00 3.36
166 167 5.163581 CGGATTTGCAAGATTTGAGAAGGAT 60.164 40.000 0.00 0.00 0.00 3.24
167 168 6.626623 CGGATTTGCAAGATTTGAGAAGGATT 60.627 38.462 0.00 0.00 0.00 3.01
168 169 7.101700 GGATTTGCAAGATTTGAGAAGGATTT 58.898 34.615 0.00 0.00 0.00 2.17
169 170 7.064253 GGATTTGCAAGATTTGAGAAGGATTTG 59.936 37.037 0.00 0.00 0.00 2.32
170 171 6.653526 TTGCAAGATTTGAGAAGGATTTGA 57.346 33.333 0.00 0.00 0.00 2.69
171 172 6.263516 TGCAAGATTTGAGAAGGATTTGAG 57.736 37.500 0.00 0.00 0.00 3.02
172 173 6.005823 TGCAAGATTTGAGAAGGATTTGAGA 58.994 36.000 0.00 0.00 0.00 3.27
173 174 6.150641 TGCAAGATTTGAGAAGGATTTGAGAG 59.849 38.462 0.00 0.00 0.00 3.20
174 175 6.404513 GCAAGATTTGAGAAGGATTTGAGAGG 60.405 42.308 0.00 0.00 0.00 3.69
175 176 5.753716 AGATTTGAGAAGGATTTGAGAGGG 58.246 41.667 0.00 0.00 0.00 4.30
176 177 4.307032 TTTGAGAAGGATTTGAGAGGGG 57.693 45.455 0.00 0.00 0.00 4.79
177 178 2.200081 TGAGAAGGATTTGAGAGGGGG 58.800 52.381 0.00 0.00 0.00 5.40
922 925 0.524862 CACCTGCTGCCTTGCTTAAG 59.475 55.000 0.00 0.00 0.00 1.85
937 942 2.418976 GCTTAAGTAAAACCTCTGCCCG 59.581 50.000 4.02 0.00 0.00 6.13
960 965 1.201429 ACCAATTCCAGCGAGGTCCT 61.201 55.000 0.00 0.00 39.02 3.85
963 968 1.065854 CAATTCCAGCGAGGTCCTTCT 60.066 52.381 0.00 0.00 39.02 2.85
966 972 1.684049 CCAGCGAGGTCCTTCTCCT 60.684 63.158 0.00 0.00 38.09 3.69
973 980 0.331954 AGGTCCTTCTCCTAGCGACA 59.668 55.000 0.00 0.00 33.04 4.35
976 983 1.544691 GTCCTTCTCCTAGCGACAACA 59.455 52.381 0.00 0.00 0.00 3.33
983 990 1.344942 CCTAGCGACAACAGCGACAC 61.345 60.000 0.00 0.00 40.04 3.67
1018 1025 4.201980 CCATCATGTGTGGCAGAACATTAG 60.202 45.833 11.92 4.29 34.81 1.73
1030 1037 0.795735 AACATTAGTCGCGGACGTCG 60.796 55.000 9.92 6.26 41.18 5.12
1095 1102 1.136305 CCCGAGAATAAGAAGCACCGA 59.864 52.381 0.00 0.00 0.00 4.69
1118 1125 4.250170 AGGTGGTGGGGGTCGACT 62.250 66.667 16.46 0.00 0.00 4.18
1165 1172 1.285950 CTCGAGCTGGACAACGACA 59.714 57.895 0.00 0.00 0.00 4.35
1202 1209 3.326747 CCGATTTTGAGAAGTTCGAGGT 58.673 45.455 0.00 0.00 0.00 3.85
1257 1264 2.028112 CGGTGGAGTTGATGAGAAGGAA 60.028 50.000 0.00 0.00 0.00 3.36
1357 1365 8.448615 GTTCGCTTGGACTAGTTTTTAATATGT 58.551 33.333 0.00 0.00 0.00 2.29
1379 1397 7.477144 TGTGTATCATTACCTTTAGCGATTG 57.523 36.000 0.00 0.00 0.00 2.67
1380 1398 7.269316 TGTGTATCATTACCTTTAGCGATTGA 58.731 34.615 0.00 0.00 0.00 2.57
1381 1399 7.931407 TGTGTATCATTACCTTTAGCGATTGAT 59.069 33.333 0.00 0.00 0.00 2.57
1382 1400 8.223769 GTGTATCATTACCTTTAGCGATTGATG 58.776 37.037 0.00 0.00 0.00 3.07
1383 1401 7.931407 TGTATCATTACCTTTAGCGATTGATGT 59.069 33.333 0.00 0.00 0.00 3.06
1384 1402 6.603237 TCATTACCTTTAGCGATTGATGTG 57.397 37.500 0.00 0.00 0.00 3.21
1410 1428 4.483476 ACATTCGTCTTGGTTTGTTAGC 57.517 40.909 0.00 0.00 0.00 3.09
1565 1645 3.132467 GCAGGACGGAGGTAGTAGAAATT 59.868 47.826 0.00 0.00 0.00 1.82
1576 1656 6.116126 AGGTAGTAGAAATTGGAGATTGTGC 58.884 40.000 0.00 0.00 0.00 4.57
1584 1664 1.737838 TGGAGATTGTGCGATTGGTC 58.262 50.000 0.00 0.00 0.00 4.02
1586 1666 1.017387 GAGATTGTGCGATTGGTCCC 58.983 55.000 0.00 0.00 0.00 4.46
1591 1671 0.958091 TGTGCGATTGGTCCCAAAAG 59.042 50.000 2.32 1.70 39.55 2.27
1628 1713 6.030228 CGATTGGGTAGAAGAGAAATTTTGC 58.970 40.000 0.00 0.00 0.00 3.68
1634 1719 4.118168 AGAAGAGAAATTTTGCAGGGGA 57.882 40.909 0.00 0.00 0.00 4.81
1667 1753 2.021457 GCTATGTTTGGGCGGTGTTAT 58.979 47.619 0.00 0.00 0.00 1.89
1676 1762 1.471287 GGGCGGTGTTATTCCTGTTTC 59.529 52.381 0.00 0.00 0.00 2.78
1709 1804 5.533903 GGATGTGCTATCATGGAGTGATTTT 59.466 40.000 0.00 0.00 45.25 1.82
1723 1818 5.061721 AGTGATTTTGGTGAAGGGTTAGT 57.938 39.130 0.00 0.00 0.00 2.24
1724 1819 5.070685 AGTGATTTTGGTGAAGGGTTAGTC 58.929 41.667 0.00 0.00 0.00 2.59
1735 1832 5.183331 GTGAAGGGTTAGTCCTTTTCCATTC 59.817 44.000 0.00 0.00 46.31 2.67
1738 1835 4.357097 AGGGTTAGTCCTTTTCCATTCCTT 59.643 41.667 0.00 0.00 32.13 3.36
1752 1849 3.550030 CCATTCCTTTGTTGTGTTCGGTC 60.550 47.826 0.00 0.00 0.00 4.79
1837 2105 4.583073 GTGTGTGTTAGGAACCAAGGATTT 59.417 41.667 0.00 0.00 0.00 2.17
1928 2231 2.897436 TCCTTGATTCTGCATCGTCTG 58.103 47.619 0.00 0.00 34.08 3.51
1977 2281 4.683781 GCAGAATGATGTCGAAGGTCTATC 59.316 45.833 0.00 0.00 39.69 2.08
2070 3155 2.163010 GTGGGTGACTGATGATGCTTTG 59.837 50.000 0.00 0.00 0.00 2.77
2085 3181 1.961793 CTTTGACCCGAACTTGACCA 58.038 50.000 0.00 0.00 0.00 4.02
2106 3202 5.165676 CCAATCATGGTTCAGTGTTCATTG 58.834 41.667 0.00 0.00 42.18 2.82
2111 3207 6.237154 TCATGGTTCAGTGTTCATTGTGATA 58.763 36.000 0.00 0.00 0.00 2.15
2171 3276 9.996554 TTTACTATCTGTGAGAGAAATTTGTCA 57.003 29.630 16.80 4.53 33.12 3.58
2293 3398 7.926018 GCAAAAAGGAAGAGAAAGAACCAAATA 59.074 33.333 0.00 0.00 0.00 1.40
2298 3403 6.209589 AGGAAGAGAAAGAACCAAATAAAGGC 59.790 38.462 0.00 0.00 0.00 4.35
2322 3427 1.376812 GTCAACGCCCCTTGGGTAG 60.377 63.158 4.84 0.83 46.51 3.18
2328 3433 2.126372 CCCCTTGGGTAGGTGGGA 59.874 66.667 4.84 0.00 43.07 4.37
2388 3496 2.480845 GCTCGGTACTTTCAACAGTGT 58.519 47.619 0.00 0.00 0.00 3.55
2478 3706 2.348472 TCCAGAGGAACCAACAGGATT 58.652 47.619 0.00 0.00 0.00 3.01
2547 3823 2.069776 CCCCTGTTGAAGCTCCTGA 58.930 57.895 0.00 0.00 0.00 3.86
2560 3836 8.703743 GTTGAAGCTCCTGATATGGATATCTAT 58.296 37.037 6.80 6.80 39.82 1.98
2584 3860 4.040461 TCTGACCAGGGAAGTAACTCTTTG 59.960 45.833 0.00 0.00 36.40 2.77
2586 3862 4.202326 TGACCAGGGAAGTAACTCTTTGTC 60.202 45.833 0.00 0.00 36.40 3.18
2597 3873 1.346068 ACTCTTTGTCCTGCTCTGACC 59.654 52.381 0.00 0.00 31.60 4.02
2620 3896 1.679032 GGCTGGGAGTATGACACCAAC 60.679 57.143 0.00 0.00 29.85 3.77
2650 3926 6.839454 AGATATATCATCCATTGCTCCCATC 58.161 40.000 15.08 0.00 0.00 3.51
2663 3939 2.549778 GCTCCCATCTCTACCATTGCTC 60.550 54.545 0.00 0.00 0.00 4.26
2718 4225 3.780294 ACCTATAACTCATTGGTGCCTCA 59.220 43.478 0.00 0.00 40.71 3.86
2733 4240 5.073554 TGGTGCCTCATGTTATGGAGAATAT 59.926 40.000 0.00 0.00 32.87 1.28
2771 4278 6.257411 CGAACCATGGATGAGATATCTTATGC 59.743 42.308 21.47 18.53 32.31 3.14
2807 4314 3.323115 TGAGCTGATTGATAGCCTACTGG 59.677 47.826 0.00 0.00 42.07 4.00
2819 4326 4.574674 AGCCTACTGGATTTTGATGTGA 57.425 40.909 0.00 0.00 34.57 3.58
2864 4372 1.002366 CCTTTGGAGCTTCGATGACG 58.998 55.000 1.89 0.00 41.26 4.35
2891 4400 6.337356 CCCATACGTGGCAAATTTTTCTAAT 58.663 36.000 0.00 0.00 44.62 1.73
3012 4526 8.208224 TGTTCTGTGTTTCAGGAATAAGACTAA 58.792 33.333 0.00 0.00 43.76 2.24
3083 4597 3.507233 TGTCCAAGCTTAGATGCAAAAGG 59.493 43.478 0.00 0.00 34.99 3.11
3105 4621 3.078837 GTTGCATCCCGGTTCTCTTTTA 58.921 45.455 0.00 0.00 0.00 1.52
3115 4631 5.353938 CCGGTTCTCTTTTATAATCGACCA 58.646 41.667 0.00 0.00 0.00 4.02
3135 4651 4.351111 ACCATTTCCCTAGTTGTCTGTCTT 59.649 41.667 0.00 0.00 0.00 3.01
3142 4662 4.442893 CCCTAGTTGTCTGTCTTTGTGTGA 60.443 45.833 0.00 0.00 0.00 3.58
3203 4731 8.300286 TCTTTTGTCAACTTTTATGTTGTCACA 58.700 29.630 6.77 3.34 45.26 3.58
3310 4838 3.674528 AGGGTATTGATGAGAGATGCG 57.325 47.619 0.00 0.00 0.00 4.73
3371 4900 7.156673 GGTTTTAAGTTTTAATTGACCCCCTC 58.843 38.462 0.00 0.00 0.00 4.30
3372 4901 6.921486 TTTAAGTTTTAATTGACCCCCTCC 57.079 37.500 0.00 0.00 0.00 4.30
3373 4902 4.759793 AAGTTTTAATTGACCCCCTCCT 57.240 40.909 0.00 0.00 0.00 3.69
3374 4903 4.759793 AGTTTTAATTGACCCCCTCCTT 57.240 40.909 0.00 0.00 0.00 3.36
3375 4904 5.087923 AGTTTTAATTGACCCCCTCCTTT 57.912 39.130 0.00 0.00 0.00 3.11
3463 5023 5.514274 AAGGTTCACACAATTCACGAATT 57.486 34.783 0.00 0.00 41.33 2.17
3474 5034 8.663911 ACACAATTCACGAATTTCACAATTTTT 58.336 25.926 2.24 0.00 38.84 1.94
3484 5046 9.833894 CGAATTTCACAATTTTTGAGTTTACAG 57.166 29.630 0.00 0.00 32.35 2.74
3511 5073 9.388506 ACCAAATTATTCAAATTGAAACACACA 57.611 25.926 12.75 0.00 40.12 3.72
3521 5083 4.873746 TTGAAACACACAAAAGGGTTCA 57.126 36.364 0.00 0.00 0.00 3.18
3522 5084 4.873746 TGAAACACACAAAAGGGTTCAA 57.126 36.364 0.00 0.00 0.00 2.69
3523 5085 5.215252 TGAAACACACAAAAGGGTTCAAA 57.785 34.783 0.00 0.00 0.00 2.69
3524 5086 5.799213 TGAAACACACAAAAGGGTTCAAAT 58.201 33.333 0.00 0.00 0.00 2.32
3525 5087 5.641209 TGAAACACACAAAAGGGTTCAAATG 59.359 36.000 0.00 0.00 0.00 2.32
3552 5119 8.240883 AGTAAAGAGCACGATAAAAGTACAAG 57.759 34.615 0.00 0.00 0.00 3.16
3573 5140 8.470657 ACAAGTATGAAGTGCTATAGAGATGA 57.529 34.615 3.21 0.00 0.00 2.92
3576 5143 8.470657 AGTATGAAGTGCTATAGAGATGACAA 57.529 34.615 3.21 0.00 0.00 3.18
3602 5169 6.906157 ATGGTCAACAAGATCATGAAGTTT 57.094 33.333 4.68 0.00 46.27 2.66
3637 5207 0.166814 GTTCTCGATGCTTGTGTGCC 59.833 55.000 0.00 0.00 0.00 5.01
3666 5239 2.762535 TCCCGTAAAAGAGAAGCCAG 57.237 50.000 0.00 0.00 0.00 4.85
3667 5240 1.087501 CCCGTAAAAGAGAAGCCAGC 58.912 55.000 0.00 0.00 0.00 4.85
3668 5241 1.610624 CCCGTAAAAGAGAAGCCAGCA 60.611 52.381 0.00 0.00 0.00 4.41
3669 5242 2.151202 CCGTAAAAGAGAAGCCAGCAA 58.849 47.619 0.00 0.00 0.00 3.91
3834 5424 3.967326 CCCACCCCTTTCTCTTTCTTTTT 59.033 43.478 0.00 0.00 0.00 1.94
3870 5460 5.240183 TCTGAATTTGGCTGTTCTTTCTGAG 59.760 40.000 0.00 0.00 0.00 3.35
3871 5461 4.889409 TGAATTTGGCTGTTCTTTCTGAGT 59.111 37.500 0.00 0.00 0.00 3.41
3873 5463 5.948992 ATTTGGCTGTTCTTTCTGAGTAC 57.051 39.130 0.00 0.00 0.00 2.73
3881 5471 0.734253 CTTTCTGAGTACGCAGCGCT 60.734 55.000 20.52 2.64 35.86 5.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.280677 CCCTAGTTTTGACTTGGATTTGCA 59.719 41.667 8.31 0.00 35.16 4.08
1 2 4.280929 ACCCTAGTTTTGACTTGGATTTGC 59.719 41.667 8.31 0.00 35.16 3.68
2 3 6.405278 AACCCTAGTTTTGACTTGGATTTG 57.595 37.500 8.31 0.00 35.16 2.32
5 6 5.077564 GGAAACCCTAGTTTTGACTTGGAT 58.922 41.667 8.31 0.00 46.25 3.41
6 7 4.466827 GGAAACCCTAGTTTTGACTTGGA 58.533 43.478 8.31 0.00 46.25 3.53
7 8 3.572682 GGGAAACCCTAGTTTTGACTTGG 59.427 47.826 0.00 0.87 46.25 3.61
8 9 4.848562 GGGAAACCCTAGTTTTGACTTG 57.151 45.455 0.00 0.00 46.25 3.16
22 23 8.938772 TCAAATATTGCTAGTTTGGGGGAAACC 61.939 40.741 8.24 0.00 44.54 3.27
23 24 5.932619 AATATTGCTAGTTTGGGGGAAAC 57.067 39.130 0.00 0.00 43.89 2.78
24 25 6.019748 TCAAATATTGCTAGTTTGGGGGAAA 58.980 36.000 8.24 0.00 34.48 3.13
25 26 5.584913 TCAAATATTGCTAGTTTGGGGGAA 58.415 37.500 8.24 0.00 34.48 3.97
26 27 5.199982 TCAAATATTGCTAGTTTGGGGGA 57.800 39.130 8.24 0.00 34.48 4.81
27 28 4.202151 GCTCAAATATTGCTAGTTTGGGGG 60.202 45.833 9.50 3.69 34.65 5.40
28 29 4.402155 TGCTCAAATATTGCTAGTTTGGGG 59.598 41.667 9.50 5.34 34.65 4.96
29 30 5.581126 TGCTCAAATATTGCTAGTTTGGG 57.419 39.130 8.24 6.63 36.61 4.12
30 31 7.546667 ACATTTGCTCAAATATTGCTAGTTTGG 59.453 33.333 7.44 0.00 38.84 3.28
31 32 8.377681 CACATTTGCTCAAATATTGCTAGTTTG 58.622 33.333 7.44 0.00 38.84 2.93
32 33 8.306038 TCACATTTGCTCAAATATTGCTAGTTT 58.694 29.630 7.44 0.00 38.84 2.66
33 34 7.756722 GTCACATTTGCTCAAATATTGCTAGTT 59.243 33.333 7.44 0.00 38.84 2.24
34 35 7.094248 TGTCACATTTGCTCAAATATTGCTAGT 60.094 33.333 7.44 0.00 38.84 2.57
35 36 7.252708 TGTCACATTTGCTCAAATATTGCTAG 58.747 34.615 7.44 0.00 38.84 3.42
36 37 7.155655 TGTCACATTTGCTCAAATATTGCTA 57.844 32.000 7.44 0.35 38.84 3.49
37 38 6.028146 TGTCACATTTGCTCAAATATTGCT 57.972 33.333 7.44 0.00 38.84 3.91
38 39 6.709145 TTGTCACATTTGCTCAAATATTGC 57.291 33.333 7.44 5.91 38.84 3.56
39 40 8.385111 GGAATTGTCACATTTGCTCAAATATTG 58.615 33.333 7.44 8.14 38.84 1.90
40 41 8.316214 AGGAATTGTCACATTTGCTCAAATATT 58.684 29.630 7.44 3.74 38.84 1.28
41 42 7.844009 AGGAATTGTCACATTTGCTCAAATAT 58.156 30.769 7.44 0.00 38.84 1.28
42 43 7.230849 AGGAATTGTCACATTTGCTCAAATA 57.769 32.000 7.44 0.00 38.84 1.40
43 44 6.105397 AGGAATTGTCACATTTGCTCAAAT 57.895 33.333 0.92 2.24 41.33 2.32
44 45 5.534207 AGGAATTGTCACATTTGCTCAAA 57.466 34.783 0.92 0.00 34.46 2.69
45 46 6.350361 CCATAGGAATTGTCACATTTGCTCAA 60.350 38.462 9.45 0.00 30.60 3.02
46 47 5.125900 CCATAGGAATTGTCACATTTGCTCA 59.874 40.000 9.45 0.00 30.60 4.26
47 48 5.357878 TCCATAGGAATTGTCACATTTGCTC 59.642 40.000 9.45 0.00 30.60 4.26
48 49 5.263599 TCCATAGGAATTGTCACATTTGCT 58.736 37.500 10.76 10.76 32.19 3.91
49 50 5.581126 TCCATAGGAATTGTCACATTTGC 57.419 39.130 0.00 0.00 0.00 3.68
50 51 7.337480 TCATCCATAGGAATTGTCACATTTG 57.663 36.000 0.00 0.00 34.34 2.32
51 52 7.959658 TTCATCCATAGGAATTGTCACATTT 57.040 32.000 0.00 0.00 34.34 2.32
52 53 7.959658 TTTCATCCATAGGAATTGTCACATT 57.040 32.000 0.00 0.00 34.34 2.71
53 54 7.415541 CGTTTTCATCCATAGGAATTGTCACAT 60.416 37.037 0.00 0.00 34.34 3.21
54 55 6.128035 CGTTTTCATCCATAGGAATTGTCACA 60.128 38.462 0.00 0.00 34.34 3.58
55 56 6.093495 TCGTTTTCATCCATAGGAATTGTCAC 59.907 38.462 0.00 0.00 34.34 3.67
56 57 6.176896 TCGTTTTCATCCATAGGAATTGTCA 58.823 36.000 0.00 0.00 34.34 3.58
57 58 6.238484 CCTCGTTTTCATCCATAGGAATTGTC 60.238 42.308 0.00 0.00 34.34 3.18
58 59 5.590259 CCTCGTTTTCATCCATAGGAATTGT 59.410 40.000 0.00 0.00 34.34 2.71
59 60 5.009010 CCCTCGTTTTCATCCATAGGAATTG 59.991 44.000 0.00 0.00 34.34 2.32
60 61 5.133221 CCCTCGTTTTCATCCATAGGAATT 58.867 41.667 0.00 0.00 34.34 2.17
61 62 4.446311 CCCCTCGTTTTCATCCATAGGAAT 60.446 45.833 0.00 0.00 34.34 3.01
62 63 3.118038 CCCCTCGTTTTCATCCATAGGAA 60.118 47.826 0.00 0.00 34.34 3.36
63 64 2.438021 CCCCTCGTTTTCATCCATAGGA 59.562 50.000 0.00 0.00 35.55 2.94
64 65 2.438021 TCCCCTCGTTTTCATCCATAGG 59.562 50.000 0.00 0.00 0.00 2.57
65 66 3.838244 TCCCCTCGTTTTCATCCATAG 57.162 47.619 0.00 0.00 0.00 2.23
66 67 3.181445 CCATCCCCTCGTTTTCATCCATA 60.181 47.826 0.00 0.00 0.00 2.74
67 68 2.423373 CCATCCCCTCGTTTTCATCCAT 60.423 50.000 0.00 0.00 0.00 3.41
68 69 1.064758 CCATCCCCTCGTTTTCATCCA 60.065 52.381 0.00 0.00 0.00 3.41
69 70 1.680338 CCATCCCCTCGTTTTCATCC 58.320 55.000 0.00 0.00 0.00 3.51
70 71 1.211949 TCCCATCCCCTCGTTTTCATC 59.788 52.381 0.00 0.00 0.00 2.92
71 72 1.212935 CTCCCATCCCCTCGTTTTCAT 59.787 52.381 0.00 0.00 0.00 2.57
72 73 0.618458 CTCCCATCCCCTCGTTTTCA 59.382 55.000 0.00 0.00 0.00 2.69
73 74 0.107165 CCTCCCATCCCCTCGTTTTC 60.107 60.000 0.00 0.00 0.00 2.29
74 75 0.549169 TCCTCCCATCCCCTCGTTTT 60.549 55.000 0.00 0.00 0.00 2.43
75 76 0.983378 CTCCTCCCATCCCCTCGTTT 60.983 60.000 0.00 0.00 0.00 3.60
76 77 1.383248 CTCCTCCCATCCCCTCGTT 60.383 63.158 0.00 0.00 0.00 3.85
77 78 1.669927 ATCTCCTCCCATCCCCTCGT 61.670 60.000 0.00 0.00 0.00 4.18
78 79 0.472734 AATCTCCTCCCATCCCCTCG 60.473 60.000 0.00 0.00 0.00 4.63
79 80 2.261729 GTAATCTCCTCCCATCCCCTC 58.738 57.143 0.00 0.00 0.00 4.30
80 81 1.132365 GGTAATCTCCTCCCATCCCCT 60.132 57.143 0.00 0.00 0.00 4.79
81 82 1.132365 AGGTAATCTCCTCCCATCCCC 60.132 57.143 0.00 0.00 31.32 4.81
82 83 2.424684 AGGTAATCTCCTCCCATCCC 57.575 55.000 0.00 0.00 31.32 3.85
83 84 4.287326 CCTTAAGGTAATCTCCTCCCATCC 59.713 50.000 13.83 0.00 36.74 3.51
84 85 4.287326 CCCTTAAGGTAATCTCCTCCCATC 59.713 50.000 20.22 0.00 36.74 3.51
85 86 4.077387 TCCCTTAAGGTAATCTCCTCCCAT 60.077 45.833 20.22 0.00 36.74 4.00
86 87 3.276578 TCCCTTAAGGTAATCTCCTCCCA 59.723 47.826 20.22 0.00 36.74 4.37
87 88 3.904965 CTCCCTTAAGGTAATCTCCTCCC 59.095 52.174 20.22 0.00 36.74 4.30
88 89 3.904965 CCTCCCTTAAGGTAATCTCCTCC 59.095 52.174 20.22 0.00 36.74 4.30
89 90 3.904965 CCCTCCCTTAAGGTAATCTCCTC 59.095 52.174 20.22 0.00 36.74 3.71
90 91 3.376555 CCCCTCCCTTAAGGTAATCTCCT 60.377 52.174 20.22 0.00 39.84 3.69
91 92 2.980379 CCCCTCCCTTAAGGTAATCTCC 59.020 54.545 20.22 0.00 36.75 3.71
92 93 3.666568 ACCCCTCCCTTAAGGTAATCTC 58.333 50.000 20.22 0.00 36.75 2.75
93 94 3.786450 CAACCCCTCCCTTAAGGTAATCT 59.214 47.826 20.22 0.00 36.75 2.40
94 95 3.117625 CCAACCCCTCCCTTAAGGTAATC 60.118 52.174 20.22 0.00 36.75 1.75
95 96 2.856864 CCAACCCCTCCCTTAAGGTAAT 59.143 50.000 20.22 0.00 36.75 1.89
96 97 2.281034 CCAACCCCTCCCTTAAGGTAA 58.719 52.381 20.22 7.17 36.75 2.85
97 98 1.975471 CCAACCCCTCCCTTAAGGTA 58.025 55.000 20.22 3.36 36.75 3.08
98 99 1.506907 GCCAACCCCTCCCTTAAGGT 61.507 60.000 20.22 0.00 36.75 3.50
99 100 1.214992 AGCCAACCCCTCCCTTAAGG 61.215 60.000 15.14 15.14 36.08 2.69
100 101 0.704664 AAGCCAACCCCTCCCTTAAG 59.295 55.000 0.00 0.00 0.00 1.85
101 102 0.702316 GAAGCCAACCCCTCCCTTAA 59.298 55.000 0.00 0.00 0.00 1.85
102 103 1.559065 CGAAGCCAACCCCTCCCTTA 61.559 60.000 0.00 0.00 0.00 2.69
103 104 2.907179 CGAAGCCAACCCCTCCCTT 61.907 63.158 0.00 0.00 0.00 3.95
104 105 3.330720 CGAAGCCAACCCCTCCCT 61.331 66.667 0.00 0.00 0.00 4.20
105 106 2.420466 TTTCGAAGCCAACCCCTCCC 62.420 60.000 0.00 0.00 0.00 4.30
106 107 0.323451 ATTTCGAAGCCAACCCCTCC 60.323 55.000 0.00 0.00 0.00 4.30
107 108 1.095600 GATTTCGAAGCCAACCCCTC 58.904 55.000 0.00 0.00 0.00 4.30
108 109 0.323451 GGATTTCGAAGCCAACCCCT 60.323 55.000 12.65 0.00 36.80 4.79
109 110 0.610785 TGGATTTCGAAGCCAACCCC 60.611 55.000 16.61 4.97 45.40 4.95
110 111 2.955609 TGGATTTCGAAGCCAACCC 58.044 52.632 16.61 6.13 45.40 4.11
114 115 0.672401 GACCGTGGATTTCGAAGCCA 60.672 55.000 15.40 15.40 46.37 4.75
115 116 0.672401 TGACCGTGGATTTCGAAGCC 60.672 55.000 11.10 11.10 37.50 4.35
116 117 1.153353 TTGACCGTGGATTTCGAAGC 58.847 50.000 0.00 0.00 0.00 3.86
117 118 4.630069 AGTATTTGACCGTGGATTTCGAAG 59.370 41.667 0.00 0.00 0.00 3.79
118 119 4.571919 AGTATTTGACCGTGGATTTCGAA 58.428 39.130 0.00 0.00 0.00 3.71
119 120 4.178540 GAGTATTTGACCGTGGATTTCGA 58.821 43.478 0.00 0.00 0.00 3.71
120 121 3.308866 GGAGTATTTGACCGTGGATTTCG 59.691 47.826 0.00 0.00 0.00 3.46
121 122 3.308866 CGGAGTATTTGACCGTGGATTTC 59.691 47.826 0.00 0.00 41.47 2.17
122 123 3.267483 CGGAGTATTTGACCGTGGATTT 58.733 45.455 0.00 0.00 41.47 2.17
123 124 2.419574 CCGGAGTATTTGACCGTGGATT 60.420 50.000 0.00 0.00 44.34 3.01
124 125 1.138266 CCGGAGTATTTGACCGTGGAT 59.862 52.381 0.00 0.00 44.34 3.41
125 126 0.533491 CCGGAGTATTTGACCGTGGA 59.467 55.000 0.00 0.00 44.34 4.02
126 127 0.533491 TCCGGAGTATTTGACCGTGG 59.467 55.000 0.00 0.00 44.34 4.94
127 128 2.596904 ATCCGGAGTATTTGACCGTG 57.403 50.000 11.34 0.00 44.34 4.94
128 129 3.267483 CAAATCCGGAGTATTTGACCGT 58.733 45.455 19.80 0.00 44.90 4.83
129 130 2.031683 GCAAATCCGGAGTATTTGACCG 59.968 50.000 25.96 6.49 44.90 4.79
130 131 3.013921 TGCAAATCCGGAGTATTTGACC 58.986 45.455 25.96 13.64 44.90 4.02
131 132 4.394920 TCTTGCAAATCCGGAGTATTTGAC 59.605 41.667 25.96 18.63 44.90 3.18
132 133 4.584874 TCTTGCAAATCCGGAGTATTTGA 58.415 39.130 25.96 12.61 44.90 2.69
133 134 4.963276 TCTTGCAAATCCGGAGTATTTG 57.037 40.909 20.06 20.06 44.90 2.32
134 135 6.152661 TCAAATCTTGCAAATCCGGAGTATTT 59.847 34.615 11.34 6.27 0.00 1.40
135 136 5.652014 TCAAATCTTGCAAATCCGGAGTATT 59.348 36.000 11.34 1.75 0.00 1.89
136 137 5.192927 TCAAATCTTGCAAATCCGGAGTAT 58.807 37.500 11.34 0.00 0.00 2.12
137 138 4.584874 TCAAATCTTGCAAATCCGGAGTA 58.415 39.130 11.34 0.00 0.00 2.59
138 139 3.420893 TCAAATCTTGCAAATCCGGAGT 58.579 40.909 11.34 3.58 0.00 3.85
139 140 3.691118 TCTCAAATCTTGCAAATCCGGAG 59.309 43.478 11.34 5.73 0.00 4.63
140 141 3.684908 TCTCAAATCTTGCAAATCCGGA 58.315 40.909 6.61 6.61 0.00 5.14
141 142 4.418392 CTTCTCAAATCTTGCAAATCCGG 58.582 43.478 0.00 0.00 0.00 5.14
142 143 4.156556 TCCTTCTCAAATCTTGCAAATCCG 59.843 41.667 0.00 0.00 0.00 4.18
143 144 5.649782 TCCTTCTCAAATCTTGCAAATCC 57.350 39.130 0.00 0.00 0.00 3.01
144 145 7.816031 TCAAATCCTTCTCAAATCTTGCAAATC 59.184 33.333 0.00 0.00 0.00 2.17
145 146 7.673180 TCAAATCCTTCTCAAATCTTGCAAAT 58.327 30.769 0.00 0.00 0.00 2.32
146 147 7.014518 TCTCAAATCCTTCTCAAATCTTGCAAA 59.985 33.333 0.00 0.00 0.00 3.68
147 148 6.491062 TCTCAAATCCTTCTCAAATCTTGCAA 59.509 34.615 0.00 0.00 0.00 4.08
148 149 6.005823 TCTCAAATCCTTCTCAAATCTTGCA 58.994 36.000 0.00 0.00 0.00 4.08
149 150 6.404513 CCTCTCAAATCCTTCTCAAATCTTGC 60.405 42.308 0.00 0.00 0.00 4.01
150 151 6.095160 CCCTCTCAAATCCTTCTCAAATCTTG 59.905 42.308 0.00 0.00 0.00 3.02
151 152 6.186234 CCCTCTCAAATCCTTCTCAAATCTT 58.814 40.000 0.00 0.00 0.00 2.40
152 153 5.339861 CCCCTCTCAAATCCTTCTCAAATCT 60.340 44.000 0.00 0.00 0.00 2.40
153 154 4.886489 CCCCTCTCAAATCCTTCTCAAATC 59.114 45.833 0.00 0.00 0.00 2.17
154 155 4.325658 CCCCCTCTCAAATCCTTCTCAAAT 60.326 45.833 0.00 0.00 0.00 2.32
155 156 3.010584 CCCCCTCTCAAATCCTTCTCAAA 59.989 47.826 0.00 0.00 0.00 2.69
156 157 2.578021 CCCCCTCTCAAATCCTTCTCAA 59.422 50.000 0.00 0.00 0.00 3.02
157 158 2.200081 CCCCCTCTCAAATCCTTCTCA 58.800 52.381 0.00 0.00 0.00 3.27
896 898 2.983725 AAGGCAGCAGGTGTGGGTTC 62.984 60.000 0.66 0.00 0.00 3.62
922 925 2.485426 GGTAAACGGGCAGAGGTTTTAC 59.515 50.000 0.00 0.00 37.52 2.01
937 942 2.418976 GACCTCGCTGGAATTGGTAAAC 59.581 50.000 1.32 0.00 39.71 2.01
960 965 0.109272 CGCTGTTGTCGCTAGGAGAA 60.109 55.000 0.00 0.00 0.00 2.87
963 968 1.211969 GTCGCTGTTGTCGCTAGGA 59.788 57.895 0.00 0.00 0.00 2.94
966 972 1.728074 CGTGTCGCTGTTGTCGCTA 60.728 57.895 0.00 0.00 0.00 4.26
973 980 1.081641 CTCGTACCGTGTCGCTGTT 60.082 57.895 0.00 0.00 0.00 3.16
976 983 3.324099 CTGCTCGTACCGTGTCGCT 62.324 63.158 0.00 0.00 0.00 4.93
983 990 1.068083 ATGATGGCTGCTCGTACCG 59.932 57.895 0.00 0.00 0.00 4.02
1018 1025 4.395583 AACCTCGACGTCCGCGAC 62.396 66.667 8.23 2.72 42.00 5.19
1116 1123 4.003788 CCGTGCCCCGTGAAGAGT 62.004 66.667 0.00 0.00 33.66 3.24
1118 1125 4.308458 CACCGTGCCCCGTGAAGA 62.308 66.667 0.00 0.00 33.66 2.87
1165 1172 0.836400 TCGGCCTCAAAGTCCTCCTT 60.836 55.000 0.00 0.00 33.79 3.36
1202 1209 2.044492 AGGTCATAGTCCCTGGAGTCAA 59.956 50.000 0.00 0.00 0.00 3.18
1242 1249 3.366476 CGTCGTCTTCCTTCTCATCAACT 60.366 47.826 0.00 0.00 0.00 3.16
1247 1254 1.130749 CGTCGTCGTCTTCCTTCTCAT 59.869 52.381 0.00 0.00 0.00 2.90
1257 1264 2.160946 GACTTCCTCGTCGTCGTCT 58.839 57.895 1.33 0.00 38.33 4.18
1328 1335 8.611654 ATTAAAAACTAGTCCAAGCGAACTAA 57.388 30.769 0.00 0.00 0.00 2.24
1330 1337 8.665685 CATATTAAAAACTAGTCCAAGCGAACT 58.334 33.333 0.00 0.00 0.00 3.01
1357 1365 7.931407 ACATCAATCGCTAAAGGTAATGATACA 59.069 33.333 0.00 0.00 33.45 2.29
1381 1399 4.859304 ACCAAGACGAATGTAGTACACA 57.141 40.909 4.80 0.00 42.69 3.72
1382 1400 5.464389 ACAAACCAAGACGAATGTAGTACAC 59.536 40.000 4.80 0.00 0.00 2.90
1383 1401 5.603596 ACAAACCAAGACGAATGTAGTACA 58.396 37.500 5.24 5.24 0.00 2.90
1384 1402 6.535274 AACAAACCAAGACGAATGTAGTAC 57.465 37.500 0.00 0.00 0.00 2.73
1410 1428 6.736110 ATTTGACCCAAAATATGATGGAGG 57.264 37.500 8.30 0.00 39.12 4.30
1513 1592 3.089284 CCCCCTCATGTTTTTAGGTCAC 58.911 50.000 0.00 0.00 0.00 3.67
1565 1645 1.678728 GGACCAATCGCACAATCTCCA 60.679 52.381 0.00 0.00 0.00 3.86
1586 1666 1.671845 TCGAACGACCAAACCCTTTTG 59.328 47.619 0.00 0.00 41.71 2.44
1591 1671 0.519961 CCAATCGAACGACCAAACCC 59.480 55.000 0.00 0.00 0.00 4.11
1628 1713 1.820877 GCCTTCCAATAGCATCCCCTG 60.821 57.143 0.00 0.00 0.00 4.45
1634 1719 4.586001 CCAAACATAGCCTTCCAATAGCAT 59.414 41.667 0.00 0.00 0.00 3.79
1667 1753 6.071952 GCACATCCAATCTAAAGAAACAGGAA 60.072 38.462 0.00 0.00 0.00 3.36
1676 1762 6.938596 TCCATGATAGCACATCCAATCTAAAG 59.061 38.462 0.00 0.00 0.00 1.85
1709 1804 3.181437 GGAAAAGGACTAACCCTTCACCA 60.181 47.826 0.00 0.00 45.30 4.17
1723 1818 4.714308 ACACAACAAAGGAATGGAAAAGGA 59.286 37.500 0.00 0.00 0.00 3.36
1724 1819 5.022282 ACACAACAAAGGAATGGAAAAGG 57.978 39.130 0.00 0.00 0.00 3.11
1735 1832 0.306533 CCGACCGAACACAACAAAGG 59.693 55.000 0.00 0.00 0.00 3.11
1738 1835 1.538634 CCTACCGACCGAACACAACAA 60.539 52.381 0.00 0.00 0.00 2.83
1752 1849 1.663702 CCGCGGAAATAGCCTACCG 60.664 63.158 24.07 0.00 46.74 4.02
2070 3155 2.178912 TGATTGGTCAAGTTCGGGTC 57.821 50.000 0.00 0.00 0.00 4.46
2085 3181 5.535783 TCACAATGAACACTGAACCATGATT 59.464 36.000 0.00 0.00 0.00 2.57
2161 3266 5.474876 AGAGGGATCAACACTGACAAATTTC 59.525 40.000 0.00 0.00 33.30 2.17
2162 3267 5.388654 AGAGGGATCAACACTGACAAATTT 58.611 37.500 0.00 0.00 33.30 1.82
2171 3276 4.225942 TCAATGCTAAGAGGGATCAACACT 59.774 41.667 0.00 0.00 33.40 3.55
2293 3398 1.679032 GGGCGTTGACAGATAGCCTTT 60.679 52.381 4.73 0.00 46.44 3.11
2298 3403 1.656652 CAAGGGGCGTTGACAGATAG 58.343 55.000 0.00 0.00 0.00 2.08
2322 3427 2.092753 TCTCTGATTTCAGCATCCCACC 60.093 50.000 2.60 0.00 43.46 4.61
2328 3433 4.347292 TGCTAGGATCTCTGATTTCAGCAT 59.653 41.667 2.60 0.00 43.46 3.79
2454 3562 1.882623 CTGTTGGTTCCTCTGGAAAGC 59.117 52.381 0.12 0.00 43.86 3.51
2478 3706 2.429971 TGGTTTGATGCAAAGTCAGCAA 59.570 40.909 0.00 0.00 46.27 3.91
2547 3823 7.665922 TCCCTGGTCAGAATAGATATCCATAT 58.334 38.462 0.00 0.00 0.00 1.78
2560 3836 3.858135 AGAGTTACTTCCCTGGTCAGAA 58.142 45.455 0.00 0.00 0.00 3.02
2584 3860 2.985456 CCCAGGTCAGAGCAGGAC 59.015 66.667 12.50 0.00 34.52 3.85
2586 3862 3.007920 AGCCCAGGTCAGAGCAGG 61.008 66.667 4.04 4.04 0.00 4.85
2597 3873 0.179000 GTGTCATACTCCCAGCCCAG 59.821 60.000 0.00 0.00 0.00 4.45
2620 3896 8.143193 GGAGCAATGGATGATATATCTAGACTG 58.857 40.741 13.79 5.81 0.00 3.51
2733 4240 4.764308 TCCATGGTTCGAAATTGACATCAA 59.236 37.500 12.58 0.00 40.51 2.57
2771 4278 2.067013 CAGCTCATCCACGCTATCATG 58.933 52.381 0.00 0.00 34.58 3.07
2807 4314 3.941483 ACATCCCGAGTCACATCAAAATC 59.059 43.478 0.00 0.00 0.00 2.17
2819 4326 2.107041 TTGCCAACGACATCCCGAGT 62.107 55.000 0.00 0.00 0.00 4.18
2891 4400 4.202419 CCCGATATACAGGGTTTGAATCCA 60.202 45.833 6.25 0.00 42.67 3.41
3012 4526 1.713078 AGGGTGCTTTCCAATCTTCCT 59.287 47.619 0.00 0.00 0.00 3.36
3083 4597 0.322546 AAGAGAACCGGGATGCAACC 60.323 55.000 6.32 4.00 0.00 3.77
3105 4621 6.099845 AGACAACTAGGGAAATGGTCGATTAT 59.900 38.462 0.00 0.00 0.00 1.28
3115 4631 5.765182 CACAAAGACAGACAACTAGGGAAAT 59.235 40.000 0.00 0.00 0.00 2.17
3203 4731 6.653526 TGATGTTCACATTCAGAAATGGTT 57.346 33.333 3.45 0.00 45.48 3.67
3463 5023 7.831753 TGGTCTGTAAACTCAAAAATTGTGAA 58.168 30.769 0.00 0.00 0.00 3.18
3484 5046 9.862585 GTGTGTTTCAATTTGAATAATTTGGTC 57.137 29.630 12.39 0.00 36.11 4.02
3511 5073 7.147742 TGCTCTTTACTTCATTTGAACCCTTTT 60.148 33.333 0.00 0.00 0.00 2.27
3512 5074 6.323739 TGCTCTTTACTTCATTTGAACCCTTT 59.676 34.615 0.00 0.00 0.00 3.11
3521 5083 8.784043 ACTTTTATCGTGCTCTTTACTTCATTT 58.216 29.630 0.00 0.00 0.00 2.32
3522 5084 8.324163 ACTTTTATCGTGCTCTTTACTTCATT 57.676 30.769 0.00 0.00 0.00 2.57
3523 5085 7.907214 ACTTTTATCGTGCTCTTTACTTCAT 57.093 32.000 0.00 0.00 0.00 2.57
3524 5086 7.868922 TGTACTTTTATCGTGCTCTTTACTTCA 59.131 33.333 0.00 0.00 0.00 3.02
3525 5087 8.236084 TGTACTTTTATCGTGCTCTTTACTTC 57.764 34.615 0.00 0.00 0.00 3.01
3552 5119 9.138062 CATTGTCATCTCTATAGCACTTCATAC 57.862 37.037 0.00 0.00 0.00 2.39
3566 5133 5.169992 TGTTGACCATCATTGTCATCTCT 57.830 39.130 0.00 0.00 41.99 3.10
3573 5140 5.947566 TCATGATCTTGTTGACCATCATTGT 59.052 36.000 8.33 0.00 34.40 2.71
3576 5143 6.185511 ACTTCATGATCTTGTTGACCATCAT 58.814 36.000 8.33 0.00 36.59 2.45
3596 5163 8.290325 AGAACCGAGAATTTCATACAAAACTTC 58.710 33.333 0.00 0.00 0.00 3.01
3597 5164 8.166422 AGAACCGAGAATTTCATACAAAACTT 57.834 30.769 0.00 0.00 0.00 2.66
3598 5165 7.360101 CGAGAACCGAGAATTTCATACAAAACT 60.360 37.037 0.00 0.00 41.76 2.66
3600 5167 6.647481 TCGAGAACCGAGAATTTCATACAAAA 59.353 34.615 0.00 0.00 43.23 2.44
3601 5168 6.160684 TCGAGAACCGAGAATTTCATACAAA 58.839 36.000 0.00 0.00 43.23 2.83
3602 5169 5.716094 TCGAGAACCGAGAATTTCATACAA 58.284 37.500 0.00 0.00 43.23 2.41
3637 5207 4.873827 TCTCTTTTACGGGAATCCATTTCG 59.126 41.667 0.09 0.00 34.98 3.46
3761 5342 6.458232 AGCTAGTGGTAGTTTCATAGTGAG 57.542 41.667 0.00 0.00 0.00 3.51
3762 5343 6.039493 GCTAGCTAGTGGTAGTTTCATAGTGA 59.961 42.308 21.62 0.00 43.86 3.41
3763 5344 6.183360 TGCTAGCTAGTGGTAGTTTCATAGTG 60.183 42.308 21.62 0.00 43.86 2.74
3777 5359 5.220931 GGATTGGATTTGTTGCTAGCTAGTG 60.221 44.000 21.62 0.00 0.00 2.74
3834 5424 4.261741 GCCAAATTCAGAGCACTTCAAGAA 60.262 41.667 0.00 0.00 0.00 2.52
3838 5428 2.555325 CAGCCAAATTCAGAGCACTTCA 59.445 45.455 0.00 0.00 0.00 3.02



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.