Multiple sequence alignment - TraesCS7B01G324000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G324000 chr7B 100.000 3477 0 0 1 3477 575978310 575974834 0.000000e+00 6421
1 TraesCS7B01G324000 chr7B 93.027 2481 129 24 1017 3477 515591354 515593810 0.000000e+00 3583
2 TraesCS7B01G324000 chr7B 87.365 277 31 4 78 351 46452771 46453046 7.240000e-82 315
3 TraesCS7B01G324000 chr7B 87.410 278 28 7 78 351 150058211 150057937 2.610000e-81 313
4 TraesCS7B01G324000 chr3A 94.374 3484 178 10 1 3477 629104927 629108399 0.000000e+00 5332
5 TraesCS7B01G324000 chr3A 91.135 282 21 4 3197 3477 531814698 531814976 2.530000e-101 379
6 TraesCS7B01G324000 chr2D 94.231 3484 170 14 1 3477 645427926 645431385 0.000000e+00 5291
7 TraesCS7B01G324000 chr2D 93.427 715 43 4 1080 1792 586830966 586831678 0.000000e+00 1057
8 TraesCS7B01G324000 chr6B 94.099 3084 170 7 1 3079 671453177 671456253 0.000000e+00 4676
9 TraesCS7B01G324000 chr6B 92.786 1400 63 21 2090 3471 58115535 58116914 0.000000e+00 1991
10 TraesCS7B01G324000 chr6B 86.957 276 34 2 78 351 316577409 316577134 3.370000e-80 309
11 TraesCS7B01G324000 chr7D 96.950 1967 58 2 1513 3477 41752458 41750492 0.000000e+00 3299
12 TraesCS7B01G324000 chr7D 94.357 886 48 2 1 884 41764256 41763371 0.000000e+00 1358
13 TraesCS7B01G324000 chr7D 91.039 491 38 1 1683 2173 486202432 486201948 0.000000e+00 658
14 TraesCS7B01G324000 chr7D 93.812 404 23 2 2178 2580 486200977 486200575 1.070000e-169 606
15 TraesCS7B01G324000 chr1B 93.899 2180 104 20 1320 3477 665424813 665422641 0.000000e+00 3262
16 TraesCS7B01G324000 chr1B 92.611 1773 110 9 1507 3265 232329633 232331398 0.000000e+00 2529
17 TraesCS7B01G324000 chr1B 90.727 550 50 1 297 845 232293645 232294194 0.000000e+00 732
18 TraesCS7B01G324000 chr1B 87.814 279 32 2 75 351 404335728 404336006 3.350000e-85 326
19 TraesCS7B01G324000 chr1B 87.365 277 31 4 78 351 620590647 620590922 7.240000e-82 315
20 TraesCS7B01G324000 chr1B 86.667 105 9 1 967 1071 470779289 470779388 1.020000e-20 111
21 TraesCS7B01G324000 chr4D 91.389 1498 84 17 1080 2575 437505855 437507309 0.000000e+00 2010
22 TraesCS7B01G324000 chr2B 92.643 1400 67 19 2090 3471 81564407 81565788 0.000000e+00 1982
23 TraesCS7B01G324000 chr2B 91.896 1271 63 22 2219 3471 725391145 725392393 0.000000e+00 1740
24 TraesCS7B01G324000 chr2B 89.895 287 25 4 3194 3477 56825302 56825017 1.970000e-97 366
25 TraesCS7B01G324000 chr2B 90.036 281 24 4 3194 3471 30038369 30038090 9.170000e-96 361
26 TraesCS7B01G324000 chr2B 88.850 287 27 5 3194 3477 691309050 691308766 7.140000e-92 348
27 TraesCS7B01G324000 chr2B 90.494 263 22 3 3216 3477 132716826 132717086 9.240000e-91 344
28 TraesCS7B01G324000 chr2B 87.368 285 32 4 3195 3477 74713926 74714208 1.200000e-84 324
29 TraesCS7B01G324000 chr2B 91.818 220 16 2 3259 3477 252094835 252095053 4.360000e-79 305
30 TraesCS7B01G324000 chr2B 88.421 190 20 2 3289 3477 435476275 435476463 9.710000e-56 228
31 TraesCS7B01G324000 chr2B 93.220 118 6 1 3362 3477 402093439 402093556 4.610000e-39 172
32 TraesCS7B01G324000 chr3B 93.761 1106 61 2 1090 2194 749193609 749192511 0.000000e+00 1653
33 TraesCS7B01G324000 chr5D 92.877 716 47 4 1080 1792 556578709 556577995 0.000000e+00 1037
34 TraesCS7B01G324000 chr3D 92.867 715 48 3 1080 1792 588696155 588696868 0.000000e+00 1035
35 TraesCS7B01G324000 chr3D 92.727 715 49 3 1080 1792 10933418 10932705 0.000000e+00 1029
36 TraesCS7B01G324000 chr7A 90.000 290 25 4 3190 3477 648532712 648532425 4.240000e-99 372
37 TraesCS7B01G324000 chr7A 88.542 288 26 4 3194 3477 99550519 99550803 3.320000e-90 342
38 TraesCS7B01G324000 chr5A 88.629 299 27 6 3184 3477 566390651 566390355 1.190000e-94 357
39 TraesCS7B01G324000 chr5A 86.622 299 34 5 3184 3477 663860212 663859915 3.350000e-85 326


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G324000 chr7B 575974834 575978310 3476 True 6421 6421 100.0000 1 3477 1 chr7B.!!$R2 3476
1 TraesCS7B01G324000 chr7B 515591354 515593810 2456 False 3583 3583 93.0270 1017 3477 1 chr7B.!!$F2 2460
2 TraesCS7B01G324000 chr3A 629104927 629108399 3472 False 5332 5332 94.3740 1 3477 1 chr3A.!!$F2 3476
3 TraesCS7B01G324000 chr2D 645427926 645431385 3459 False 5291 5291 94.2310 1 3477 1 chr2D.!!$F2 3476
4 TraesCS7B01G324000 chr2D 586830966 586831678 712 False 1057 1057 93.4270 1080 1792 1 chr2D.!!$F1 712
5 TraesCS7B01G324000 chr6B 671453177 671456253 3076 False 4676 4676 94.0990 1 3079 1 chr6B.!!$F2 3078
6 TraesCS7B01G324000 chr6B 58115535 58116914 1379 False 1991 1991 92.7860 2090 3471 1 chr6B.!!$F1 1381
7 TraesCS7B01G324000 chr7D 41750492 41752458 1966 True 3299 3299 96.9500 1513 3477 1 chr7D.!!$R1 1964
8 TraesCS7B01G324000 chr7D 41763371 41764256 885 True 1358 1358 94.3570 1 884 1 chr7D.!!$R2 883
9 TraesCS7B01G324000 chr7D 486200575 486202432 1857 True 632 658 92.4255 1683 2580 2 chr7D.!!$R3 897
10 TraesCS7B01G324000 chr1B 665422641 665424813 2172 True 3262 3262 93.8990 1320 3477 1 chr1B.!!$R1 2157
11 TraesCS7B01G324000 chr1B 232329633 232331398 1765 False 2529 2529 92.6110 1507 3265 1 chr1B.!!$F2 1758
12 TraesCS7B01G324000 chr1B 232293645 232294194 549 False 732 732 90.7270 297 845 1 chr1B.!!$F1 548
13 TraesCS7B01G324000 chr4D 437505855 437507309 1454 False 2010 2010 91.3890 1080 2575 1 chr4D.!!$F1 1495
14 TraesCS7B01G324000 chr2B 81564407 81565788 1381 False 1982 1982 92.6430 2090 3471 1 chr2B.!!$F2 1381
15 TraesCS7B01G324000 chr2B 725391145 725392393 1248 False 1740 1740 91.8960 2219 3471 1 chr2B.!!$F7 1252
16 TraesCS7B01G324000 chr3B 749192511 749193609 1098 True 1653 1653 93.7610 1090 2194 1 chr3B.!!$R1 1104
17 TraesCS7B01G324000 chr5D 556577995 556578709 714 True 1037 1037 92.8770 1080 1792 1 chr5D.!!$R1 712
18 TraesCS7B01G324000 chr3D 588696155 588696868 713 False 1035 1035 92.8670 1080 1792 1 chr3D.!!$F1 712
19 TraesCS7B01G324000 chr3D 10932705 10933418 713 True 1029 1029 92.7270 1080 1792 1 chr3D.!!$R1 712

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
577 582 0.250038 CCATTCATGACGCCGAGGAT 60.250 55.0 0.0 0.0 0.0 3.24 F
1261 1276 0.108585 GTGGTCTGGGAGCTTGTGAA 59.891 55.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2329 3330 0.613777 AAACCTAGAAGCGGGACAGG 59.386 55.0 0.00 0.0 0.00 4.00 R
2726 3746 0.947244 CCAACAGCACAGTTGTCCTC 59.053 55.0 13.33 0.0 45.66 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.305381 CTCGTCCTCCTTCCACCCT 60.305 63.158 0.00 0.00 0.00 4.34
163 165 2.520982 CCCCGACCTCGCCATCTA 60.521 66.667 0.00 0.00 38.18 1.98
285 287 4.444081 AGGTCCGTCTCCTCCCGG 62.444 72.222 0.00 0.00 45.55 5.73
294 296 4.377760 TCCTCCCGGAGCCGAGTT 62.378 66.667 11.05 0.00 42.83 3.01
319 321 2.173669 CCGTCGATTTGCCTCGCAT 61.174 57.895 0.00 0.00 38.76 4.73
384 386 4.818005 TCGGAATCCATGATGATTTGACAG 59.182 41.667 0.00 0.00 35.15 3.51
421 423 0.391263 AGCGTCGAATGTTCCTTCCC 60.391 55.000 0.00 0.00 0.00 3.97
486 488 1.278413 GTGTAGGTGGGGAGAGGAAAC 59.722 57.143 0.00 0.00 0.00 2.78
577 582 0.250038 CCATTCATGACGCCGAGGAT 60.250 55.000 0.00 0.00 0.00 3.24
600 605 1.706443 GAGAATGCCAAGCAACAAGC 58.294 50.000 0.00 0.00 43.62 4.01
640 645 6.862711 TCGATGACTACTAGTTGTATCCAG 57.137 41.667 10.02 0.00 0.00 3.86
681 686 2.916934 ACCCATTTGCTACCCTACTTGA 59.083 45.455 0.00 0.00 0.00 3.02
823 829 8.740123 TTTATGAAAAGAAGTGGTACTGTCAA 57.260 30.769 0.00 0.00 0.00 3.18
828 834 7.990886 TGAAAAGAAGTGGTACTGTCAAAGTAT 59.009 33.333 0.00 0.00 43.30 2.12
830 836 9.490379 AAAAGAAGTGGTACTGTCAAAGTATAG 57.510 33.333 0.00 0.00 43.30 1.31
845 851 7.331934 GTCAAAGTATAGCTGAAGTGTTGATGA 59.668 37.037 0.00 0.00 0.00 2.92
864 870 5.069516 TGATGATCTACTATCAGCACAAGCA 59.930 40.000 2.04 0.00 45.49 3.91
872 878 3.637998 ATCAGCACAAGCAAGAACAAG 57.362 42.857 0.00 0.00 45.49 3.16
898 904 7.124750 GGTAGTAGTGGTCCTTAGTTTAATCCA 59.875 40.741 0.00 0.00 0.00 3.41
975 981 7.208080 AGTTACTATATCTTTTACGCCCACTG 58.792 38.462 0.00 0.00 0.00 3.66
1041 1048 4.894784 AGTAGTACATTATCATTGGCCCG 58.105 43.478 0.00 0.00 0.00 6.13
1071 1078 3.294214 AGATTTTGATCCTGGTGATGCC 58.706 45.455 0.00 0.00 32.41 4.40
1137 1151 9.695526 TCAAATAGTCAAATGTTTCCTTGATTG 57.304 29.630 0.00 0.00 34.26 2.67
1157 1171 3.623703 TGTGTAGGATTAGTGCGTCCTA 58.376 45.455 0.00 0.00 42.93 2.94
1179 1193 1.339055 TGCTTGTTGCTAGCTGTAGGG 60.339 52.381 17.23 3.29 43.37 3.53
1234 1249 2.667473 AGGGAAATGACTACCGTTCG 57.333 50.000 0.00 0.00 0.00 3.95
1238 1253 1.925185 GAAATGACTACCGTTCGAGGC 59.075 52.381 0.00 0.00 33.69 4.70
1240 1255 1.183549 ATGACTACCGTTCGAGGCTT 58.816 50.000 0.00 0.00 33.69 4.35
1242 1257 1.336517 TGACTACCGTTCGAGGCTTTG 60.337 52.381 0.00 0.00 33.69 2.77
1256 1271 0.538287 GCTTTGTGGTCTGGGAGCTT 60.538 55.000 0.00 0.00 0.00 3.74
1259 1274 0.179020 TTGTGGTCTGGGAGCTTGTG 60.179 55.000 0.00 0.00 0.00 3.33
1260 1275 1.053835 TGTGGTCTGGGAGCTTGTGA 61.054 55.000 0.00 0.00 0.00 3.58
1261 1276 0.108585 GTGGTCTGGGAGCTTGTGAA 59.891 55.000 0.00 0.00 0.00 3.18
1293 1314 6.319141 ACTGCTTCTTGATAAAACAGTTCC 57.681 37.500 0.00 0.00 33.31 3.62
1311 1332 3.032033 GCAACAGCAACGCCAAGC 61.032 61.111 0.00 0.00 0.00 4.01
1329 1350 2.828868 TGCGGTTCAGCAAGGAGT 59.171 55.556 0.00 0.00 45.06 3.85
1350 1371 4.102524 AGTCCAACAACCTCTACAATGTCA 59.897 41.667 0.00 0.00 0.00 3.58
1361 1382 6.042781 ACCTCTACAATGTCAACTCCTACAAA 59.957 38.462 0.00 0.00 0.00 2.83
1367 1388 6.998074 ACAATGTCAACTCCTACAAATTCTCA 59.002 34.615 0.00 0.00 0.00 3.27
1384 1405 2.891580 TCTCAAGTCCGTAGCTCTTTGT 59.108 45.455 0.00 0.00 0.00 2.83
1393 1414 4.748102 TCCGTAGCTCTTTGTAGTGTTTTG 59.252 41.667 0.00 0.00 0.00 2.44
1718 1740 2.544721 TGTCTCTGCTTCCTCCTTGAT 58.455 47.619 0.00 0.00 0.00 2.57
1740 1762 0.892755 CAGAGTTGTGGCATGGCATT 59.107 50.000 26.07 11.40 0.00 3.56
1792 1827 2.026014 GCACCGTTGTTGCACTGG 59.974 61.111 0.00 0.00 0.00 4.00
1796 1831 0.464735 ACCGTTGTTGCACTGGCTTA 60.465 50.000 0.00 0.00 41.91 3.09
1916 1951 6.472163 CAGTTTGTTGACGAGCTATTTGTTTT 59.528 34.615 0.00 0.00 0.00 2.43
2259 3260 9.515226 ACTAACTTTAATTTATGTTCCTGCAGA 57.485 29.630 17.39 0.00 0.00 4.26
2389 3390 6.808829 TCGTTAGGAGAGTTTGAAGTTGTTA 58.191 36.000 0.00 0.00 0.00 2.41
2433 3434 8.367660 AGTGATTTTAGTCATCCTCTTCACTA 57.632 34.615 0.00 0.00 39.43 2.74
2469 3485 6.207025 GGTCAGAACAACTCTTGTCTAGTCTA 59.793 42.308 0.00 0.00 44.59 2.59
2719 3739 2.872858 GTGAGGACTTTGACCACAGAAC 59.127 50.000 0.00 0.00 0.00 3.01
2726 3746 3.869246 ACTTTGACCACAGAACTACAACG 59.131 43.478 0.00 0.00 0.00 4.10
2784 3805 6.183360 GGTCCAAGGACGACTATATACTTTGT 60.183 42.308 12.77 0.00 45.41 2.83
2938 3959 7.222611 GTGCAGTCTTGTATGTTTTTGTGAATT 59.777 33.333 0.00 0.00 0.00 2.17
3178 4199 1.610379 GGCTTGGCCCATGAAGGTT 60.610 57.895 0.00 0.00 44.06 3.50
3294 4317 1.228245 AGCTTGCCACGTTGGATGT 60.228 52.632 8.04 0.00 40.96 3.06
3299 4322 0.682292 TGCCACGTTGGATGTCTACA 59.318 50.000 8.04 0.00 40.96 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.840722 GGAGGAACAGGGTGGAAGGA 60.841 60.000 0.00 0.00 0.00 3.36
37 38 2.552585 GATCGCGAACGGGAGGAACA 62.553 60.000 15.24 0.00 40.35 3.18
163 165 1.746517 GTCGTGGTTGGAGTGGAGT 59.253 57.895 0.00 0.00 0.00 3.85
220 222 1.226859 GTCGCCATCGTGGATTCGA 60.227 57.895 8.04 5.10 40.96 3.71
223 225 0.321210 TGTTGTCGCCATCGTGGATT 60.321 50.000 8.04 0.00 40.96 3.01
259 261 0.820871 GAGACGGACCTGATCTTGCT 59.179 55.000 0.00 0.00 0.00 3.91
262 264 1.686741 GGAGGAGACGGACCTGATCTT 60.687 57.143 0.00 0.00 37.93 2.40
285 287 1.082104 CGGCAAAACAACTCGGCTC 60.082 57.895 0.00 0.00 0.00 4.70
294 296 0.318275 GGCAAATCGACGGCAAAACA 60.318 50.000 7.04 0.00 0.00 2.83
319 321 3.311110 GGTCAGAGGTCGTGGCCA 61.311 66.667 0.00 0.00 39.68 5.36
407 409 0.804989 GCACAGGGAAGGAACATTCG 59.195 55.000 0.00 0.00 0.00 3.34
421 423 2.159338 ACAGTTTGAAGCACAAGCACAG 60.159 45.455 11.42 5.31 45.49 3.66
486 488 2.115911 CCTCCTCCTCCTCGTCGTG 61.116 68.421 0.00 0.00 0.00 4.35
543 548 7.415541 CGTCATGAATGGTGTTTAATTGGAGAT 60.416 37.037 0.00 0.00 0.00 2.75
577 582 1.603171 TTGCTTGGCATTCTCGGCA 60.603 52.632 0.00 0.00 38.76 5.69
600 605 5.050091 GTCATCGAATAAATGCAGGTGGTAG 60.050 44.000 0.00 0.00 0.00 3.18
640 645 1.268999 TGTCAGCCGATGCACAAAAAC 60.269 47.619 0.00 0.00 41.13 2.43
681 686 2.168728 GGAACGAGAAGGACTGGCTAAT 59.831 50.000 0.00 0.00 0.00 1.73
823 829 7.790027 AGATCATCAACACTTCAGCTATACTT 58.210 34.615 0.00 0.00 0.00 2.24
828 834 6.782082 AGTAGATCATCAACACTTCAGCTA 57.218 37.500 0.00 0.00 0.00 3.32
830 836 7.205992 TGATAGTAGATCATCAACACTTCAGC 58.794 38.462 0.00 0.00 0.00 4.26
845 851 5.604758 TCTTGCTTGTGCTGATAGTAGAT 57.395 39.130 0.00 0.00 40.48 1.98
864 870 4.490706 AGGACCACTACTACCTTGTTCTT 58.509 43.478 0.00 0.00 0.00 2.52
872 878 7.124750 TGGATTAAACTAAGGACCACTACTACC 59.875 40.741 0.00 0.00 0.00 3.18
898 904 5.789643 TTTCACTACCGGTACTGTAACTT 57.210 39.130 11.16 0.00 0.00 2.66
1033 1039 3.508845 ATCTAGCAATAACGGGCCAAT 57.491 42.857 4.39 0.00 0.00 3.16
1041 1048 7.283127 TCACCAGGATCAAAATCTAGCAATAAC 59.717 37.037 0.00 0.00 32.12 1.89
1071 1078 6.204688 TGATTGCAAGTAGAAACAAGTACAGG 59.795 38.462 4.94 0.00 0.00 4.00
1179 1193 4.625311 CCAAAACAACAACCAAAGTCAGAC 59.375 41.667 0.00 0.00 0.00 3.51
1234 1249 0.322008 CTCCCAGACCACAAAGCCTC 60.322 60.000 0.00 0.00 0.00 4.70
1238 1253 1.242076 CAAGCTCCCAGACCACAAAG 58.758 55.000 0.00 0.00 0.00 2.77
1240 1255 0.179020 CACAAGCTCCCAGACCACAA 60.179 55.000 0.00 0.00 0.00 3.33
1242 1257 0.108585 TTCACAAGCTCCCAGACCAC 59.891 55.000 0.00 0.00 0.00 4.16
1256 1271 4.517285 AGAAGCAGTTGTTCTTCTTCACA 58.483 39.130 9.12 0.00 44.64 3.58
1293 1314 2.726912 CTTGGCGTTGCTGTTGCG 60.727 61.111 0.00 0.00 43.34 4.85
1329 1350 4.698201 TGACATTGTAGAGGTTGTTGGA 57.302 40.909 0.00 0.00 0.00 3.53
1350 1371 5.221661 ACGGACTTGAGAATTTGTAGGAGTT 60.222 40.000 0.00 0.00 0.00 3.01
1361 1382 4.021016 ACAAAGAGCTACGGACTTGAGAAT 60.021 41.667 0.00 0.00 0.00 2.40
1367 1388 3.573110 ACACTACAAAGAGCTACGGACTT 59.427 43.478 0.00 0.00 0.00 3.01
1384 1405 5.639931 GCAAACAAAAGGGTTCAAAACACTA 59.360 36.000 0.00 0.00 46.52 2.74
1393 1414 3.595173 ACACTTGCAAACAAAAGGGTTC 58.405 40.909 0.00 0.00 36.65 3.62
1634 1656 5.221244 GGGCAATTCAAGTACAAAACTCTGT 60.221 40.000 0.00 0.00 37.50 3.41
1718 1740 0.961019 GCCATGCCACAACTCTGAAA 59.039 50.000 0.00 0.00 0.00 2.69
1740 1762 4.097741 CACAAGTCCACCACAAAATCAAGA 59.902 41.667 0.00 0.00 0.00 3.02
1792 1827 6.183360 ACAAGATGCATTCAGTCAAGATAAGC 60.183 38.462 0.00 0.00 0.00 3.09
1796 1831 5.250982 TGACAAGATGCATTCAGTCAAGAT 58.749 37.500 19.94 0.00 38.15 2.40
1843 1878 7.148306 GCGTCTATCATTTCCTAACCAAAGAAA 60.148 37.037 0.00 0.00 34.26 2.52
1950 1985 5.123502 CACTTCAGAAGATGGAATGACAAGG 59.876 44.000 17.56 0.00 0.00 3.61
1959 1994 3.242867 ACTGGTCACTTCAGAAGATGGA 58.757 45.455 17.56 8.28 36.22 3.41
2006 2041 2.972713 ACACCTGTGAGTACTGGACAAT 59.027 45.455 0.00 0.00 45.82 2.71
2329 3330 0.613777 AAACCTAGAAGCGGGACAGG 59.386 55.000 0.00 0.00 0.00 4.00
2410 3411 8.595362 TCTAGTGAAGAGGATGACTAAAATCA 57.405 34.615 0.00 0.00 0.00 2.57
2433 3434 5.930135 AGTTGTTCTGACCATTGTTACTCT 58.070 37.500 0.00 0.00 0.00 3.24
2469 3485 9.872684 ATGGAAGAACATGATTTATTATCCTGT 57.127 29.630 0.00 0.00 0.00 4.00
2719 3739 1.792949 GCACAGTTGTCCTCGTTGTAG 59.207 52.381 0.00 0.00 0.00 2.74
2726 3746 0.947244 CCAACAGCACAGTTGTCCTC 59.053 55.000 13.33 0.00 45.66 3.71
2784 3805 0.956633 CTTGCTTGGCTCTTTGCTGA 59.043 50.000 0.00 0.00 42.39 4.26
2938 3959 9.636789 ATCAAATCCAGAACTCATATGATCAAA 57.363 29.630 5.72 0.00 0.00 2.69
3030 4051 7.110155 TGGTCCAGTAGAATATTTGGTCTTTC 58.890 38.462 4.25 0.00 32.15 2.62
3257 4280 2.229543 GCTGATGTGGCACAAGAATCAA 59.770 45.455 25.95 7.51 44.16 2.57
3294 4317 1.384502 CCTCCCCAGGCCATGTAGA 60.385 63.158 5.01 0.00 30.98 2.59
3299 4322 4.066139 GCAACCTCCCCAGGCCAT 62.066 66.667 5.01 0.00 45.05 4.40
3381 4415 0.739813 GCTGGCGGTCGTAAACTGAT 60.740 55.000 0.00 0.00 36.22 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.