Multiple sequence alignment - TraesCS7B01G323700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G323700 chr7B 100.000 8694 0 0 1 8694 575375613 575384306 0.000000e+00 16055
1 TraesCS7B01G323700 chr7B 90.559 752 62 5 7947 8694 547319418 547318672 0.000000e+00 987
2 TraesCS7B01G323700 chr7B 75.000 660 147 15 5282 5935 199759070 199759717 1.100000e-73 289
3 TraesCS7B01G323700 chr7B 87.692 130 14 2 7947 8074 547303451 547303580 5.440000e-32 150
4 TraesCS7B01G323700 chr7D 95.845 4212 86 24 3623 7813 535326554 535330697 0.000000e+00 6726
5 TraesCS7B01G323700 chr7D 95.622 2695 73 25 836 3500 535323877 535326556 0.000000e+00 4281
6 TraesCS7B01G323700 chr7D 83.428 706 77 22 15 708 535323131 535323808 3.450000e-173 619
7 TraesCS7B01G323700 chr7D 74.964 695 154 17 5282 5969 228513971 228514652 1.420000e-77 302
8 TraesCS7B01G323700 chr7A 97.625 2695 50 9 3623 6311 615338394 615341080 0.000000e+00 4610
9 TraesCS7B01G323700 chr7A 95.464 2844 87 28 671 3500 615335581 615338396 0.000000e+00 4499
10 TraesCS7B01G323700 chr7A 97.742 753 10 4 6308 7055 615341161 615341911 0.000000e+00 1290
11 TraesCS7B01G323700 chr7A 94.063 758 27 12 7052 7802 615342437 615343183 0.000000e+00 1134
12 TraesCS7B01G323700 chr7A 74.964 695 154 17 5282 5969 240730621 240731302 1.420000e-77 302
13 TraesCS7B01G323700 chr7A 90.722 97 6 2 7850 7946 615343186 615343279 9.160000e-25 126
14 TraesCS7B01G323700 chr4D 90.263 2013 135 35 1171 3163 318327887 318329858 0.000000e+00 2575
15 TraesCS7B01G323700 chr1B 90.280 751 65 4 7947 8694 588423709 588424454 0.000000e+00 976
16 TraesCS7B01G323700 chr1B 88.820 161 14 4 3469 3626 383464526 383464685 2.480000e-45 195
17 TraesCS7B01G323700 chr3B 89.894 752 67 5 7947 8694 607479471 607478725 0.000000e+00 959
18 TraesCS7B01G323700 chr3B 91.083 157 13 1 3728 3884 328715444 328715599 2.460000e-50 211
19 TraesCS7B01G323700 chrUn 89.880 751 66 6 7947 8694 354053186 354053929 0.000000e+00 957
20 TraesCS7B01G323700 chrUn 89.747 751 67 6 7947 8694 214923254 214922511 0.000000e+00 952
21 TraesCS7B01G323700 chrUn 88.462 130 13 2 7947 8074 214921988 214922117 1.170000e-33 156
22 TraesCS7B01G323700 chrUn 88.462 130 13 2 7947 8074 354054452 354054323 1.170000e-33 156
23 TraesCS7B01G323700 chr1D 89.645 676 51 10 1692 2358 371677572 371678237 0.000000e+00 843
24 TraesCS7B01G323700 chr1D 94.203 138 7 1 3492 3628 194139763 194139900 8.840000e-50 209
25 TraesCS7B01G323700 chr1D 88.820 161 14 4 3469 3626 265352359 265352200 2.480000e-45 195
26 TraesCS7B01G323700 chr3D 86.733 505 59 5 8191 8692 577808200 577807701 9.860000e-154 555
27 TraesCS7B01G323700 chr3D 89.157 249 24 3 7947 8193 577816550 577816303 3.050000e-79 307
28 TraesCS7B01G323700 chr3D 89.595 173 14 3 3716 3888 288550621 288550453 5.290000e-52 217
29 TraesCS7B01G323700 chr6D 77.201 829 168 16 5145 5958 73522391 73523213 1.710000e-126 464
30 TraesCS7B01G323700 chr6D 88.820 161 14 4 3469 3626 137216603 137216444 2.480000e-45 195
31 TraesCS7B01G323700 chr6D 88.820 161 14 4 3469 3626 412524911 412524752 2.480000e-45 195
32 TraesCS7B01G323700 chr6D 85.714 105 15 0 4401 4505 73521591 73521695 2.570000e-20 111
33 TraesCS7B01G323700 chr6A 89.286 364 32 5 1996 2358 326746719 326746362 4.790000e-122 449
34 TraesCS7B01G323700 chr6A 85.714 105 15 0 4401 4505 89970505 89970609 2.570000e-20 111
35 TraesCS7B01G323700 chr5D 90.751 173 9 6 1175 1341 49689848 49690019 3.160000e-54 224
36 TraesCS7B01G323700 chr5D 88.889 162 14 4 3468 3626 90184260 90184420 6.890000e-46 196
37 TraesCS7B01G323700 chr6B 80.428 327 32 16 1019 1344 91136923 91136628 4.090000e-53 220
38 TraesCS7B01G323700 chr6B 88.820 161 14 4 3469 3626 175825054 175824895 2.480000e-45 195
39 TraesCS7B01G323700 chr6B 84.762 105 16 0 4401 4505 147884172 147884276 1.190000e-18 106
40 TraesCS7B01G323700 chr2B 89.941 169 13 2 3719 3886 403702443 403702278 1.900000e-51 215
41 TraesCS7B01G323700 chr3A 91.083 157 14 0 3728 3884 310692088 310691932 6.840000e-51 213
42 TraesCS7B01G323700 chr3A 88.136 177 17 2 3714 3889 509865420 509865247 3.180000e-49 207
43 TraesCS7B01G323700 chr2D 89.349 169 14 2 3719 3886 335689867 335689702 8.840000e-50 209
44 TraesCS7B01G323700 chr2D 88.820 161 14 4 3469 3626 84466808 84466649 2.480000e-45 195
45 TraesCS7B01G323700 chr2D 88.820 161 14 4 3469 3626 420406000 420406159 2.480000e-45 195
46 TraesCS7B01G323700 chr2A 89.349 169 14 2 3719 3886 446072216 446072051 8.840000e-50 209
47 TraesCS7B01G323700 chr5A 89.222 167 11 4 1175 1341 39113509 39113668 1.480000e-47 202
48 TraesCS7B01G323700 chr5A 88.623 167 12 4 1175 1341 38996449 38996608 6.890000e-46 196


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G323700 chr7B 575375613 575384306 8693 False 16055.000000 16055 100.000000 1 8694 1 chr7B.!!$F3 8693
1 TraesCS7B01G323700 chr7B 547318672 547319418 746 True 987.000000 987 90.559000 7947 8694 1 chr7B.!!$R1 747
2 TraesCS7B01G323700 chr7B 199759070 199759717 647 False 289.000000 289 75.000000 5282 5935 1 chr7B.!!$F1 653
3 TraesCS7B01G323700 chr7D 535323131 535330697 7566 False 3875.333333 6726 91.631667 15 7813 3 chr7D.!!$F2 7798
4 TraesCS7B01G323700 chr7D 228513971 228514652 681 False 302.000000 302 74.964000 5282 5969 1 chr7D.!!$F1 687
5 TraesCS7B01G323700 chr7A 615335581 615343279 7698 False 2331.800000 4610 95.123200 671 7946 5 chr7A.!!$F2 7275
6 TraesCS7B01G323700 chr7A 240730621 240731302 681 False 302.000000 302 74.964000 5282 5969 1 chr7A.!!$F1 687
7 TraesCS7B01G323700 chr4D 318327887 318329858 1971 False 2575.000000 2575 90.263000 1171 3163 1 chr4D.!!$F1 1992
8 TraesCS7B01G323700 chr1B 588423709 588424454 745 False 976.000000 976 90.280000 7947 8694 1 chr1B.!!$F2 747
9 TraesCS7B01G323700 chr3B 607478725 607479471 746 True 959.000000 959 89.894000 7947 8694 1 chr3B.!!$R1 747
10 TraesCS7B01G323700 chrUn 354053186 354053929 743 False 957.000000 957 89.880000 7947 8694 1 chrUn.!!$F2 747
11 TraesCS7B01G323700 chrUn 214922511 214923254 743 True 952.000000 952 89.747000 7947 8694 1 chrUn.!!$R1 747
12 TraesCS7B01G323700 chr1D 371677572 371678237 665 False 843.000000 843 89.645000 1692 2358 1 chr1D.!!$F2 666
13 TraesCS7B01G323700 chr6D 73521591 73523213 1622 False 287.500000 464 81.457500 4401 5958 2 chr6D.!!$F1 1557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
68 69 0.108472 TCAGCGAGCACATGAAGGAG 60.108 55.000 0.00 0.00 0.00 3.69 F
851 864 0.166379 TAAAACCCGTTCGCGATTGC 59.834 50.000 10.88 2.36 44.71 3.56 F
918 941 0.395686 GTACCTATTTCGGCCTCCCC 59.604 60.000 0.00 0.00 0.00 4.81 F
919 942 0.765519 TACCTATTTCGGCCTCCCCC 60.766 60.000 0.00 0.00 0.00 5.40 F
921 944 1.755384 CTATTTCGGCCTCCCCCTC 59.245 63.158 0.00 0.00 0.00 4.30 F
922 945 1.768888 TATTTCGGCCTCCCCCTCC 60.769 63.158 0.00 0.00 0.00 4.30 F
2005 2056 1.922447 TCCTGGGCACATGTAGGAATT 59.078 47.619 11.89 0.00 36.44 2.17 F
3443 3507 2.969950 ACCCCTTTGCCTTTTTCCTTAC 59.030 45.455 0.00 0.00 0.00 2.34 F
3513 3577 0.178926 TTTGTACTCCCTCCGTCCCA 60.179 55.000 0.00 0.00 0.00 4.37 F
3514 3578 0.178926 TTGTACTCCCTCCGTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12 F
4165 4233 0.451628 CAAGCATGCGTCTGAACACG 60.452 55.000 13.01 0.00 42.95 4.49 F
6107 6336 3.329386 TCTGCAGCAGTAAGAATCACAC 58.671 45.455 22.10 0.00 32.61 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1384 1407 3.302347 GACGCCCAGAGTCCCACAG 62.302 68.421 0.00 0.00 32.78 3.66 R
2673 2730 0.928505 TGGGCCATCCATTCATGTCT 59.071 50.000 0.00 0.00 41.46 3.41 R
2811 2870 4.892934 ACCAAATTGCTCTTCCTTGTACAA 59.107 37.500 8.28 8.28 0.00 2.41 R
2972 3034 8.051535 AGGTATCATGTGTTCTTGAGAAATCAT 58.948 33.333 0.00 1.53 35.58 2.45 R
3096 3158 9.705290 CATGTACACATATAGCACTTATACCAA 57.295 33.333 0.00 0.00 34.26 3.67 R
3443 3507 6.908870 TTAGGACAAATCATGAATCAGACG 57.091 37.500 0.00 0.00 0.00 4.18 R
3497 3561 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73 R
4701 4794 4.187694 GCTATATGTATTCCTGCTGAGGC 58.812 47.826 0.00 0.00 39.57 4.70 R
6029 6258 3.636764 GGGTCACTGTTCACAAAGGAAAT 59.363 43.478 0.00 0.00 0.00 2.17 R
6166 6395 8.981647 AGAGCAAATACATAAAACTTGCAAAAG 58.018 29.630 0.00 0.00 43.77 2.27 R
6617 6932 2.487265 GGGAACAGGCATCAATATCGGT 60.487 50.000 0.00 0.00 0.00 4.69 R
8398 9289 0.035056 ATCTTTGAGGCCGGTGAAGG 60.035 55.000 1.90 0.00 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.866486 GCATCATCATGAGCGTATACATCA 59.134 41.667 0.09 9.52 30.57 3.07
43 44 4.537965 CGTATACATCAGTTCCTCTTCGG 58.462 47.826 3.32 0.00 0.00 4.30
68 69 0.108472 TCAGCGAGCACATGAAGGAG 60.108 55.000 0.00 0.00 0.00 3.69
71 72 1.078918 CGAGCACATGAAGGAGCCA 60.079 57.895 0.00 0.00 0.00 4.75
121 122 3.541632 ACGTCCGGAATATTTCATTGCT 58.458 40.909 5.23 0.00 0.00 3.91
147 148 0.250727 TTGACTGGCACAAGGCTACC 60.251 55.000 0.00 0.00 44.01 3.18
152 153 1.521681 GGCACAAGGCTACCGCTAG 60.522 63.158 0.00 0.00 44.01 3.42
183 185 3.985925 CACAAGAGCATGAAAAGAAAGGC 59.014 43.478 0.00 0.00 0.00 4.35
222 225 0.260230 TCAGTTGGAAAAGGGTGGCA 59.740 50.000 0.00 0.00 0.00 4.92
228 231 0.396060 GGAAAAGGGTGGCAATTGCA 59.604 50.000 30.32 14.71 44.36 4.08
241 244 3.545822 GGCAATTGCAAACGTTTTTCCTG 60.546 43.478 30.32 1.16 44.36 3.86
251 255 6.623633 CAAACGTTTTTCCTGACAATTTACG 58.376 36.000 11.66 0.00 0.00 3.18
271 275 4.517285 ACGTTGTGAGAGAATAATGGCAT 58.483 39.130 0.00 0.00 0.00 4.40
272 276 5.670485 ACGTTGTGAGAGAATAATGGCATA 58.330 37.500 0.00 0.00 0.00 3.14
294 298 8.133627 GCATATTCTTCAGAAACACATAGCAAT 58.866 33.333 0.00 0.00 37.61 3.56
366 370 8.201554 TCCTCAATCGACTGATTAATTTCTTG 57.798 34.615 0.00 0.00 42.94 3.02
371 375 6.817765 TCGACTGATTAATTTCTTGGCTTT 57.182 33.333 0.00 0.00 0.00 3.51
378 382 0.521735 ATTTCTTGGCTTTCGTCCGC 59.478 50.000 0.00 0.00 0.00 5.54
379 383 1.837538 TTTCTTGGCTTTCGTCCGCG 61.838 55.000 0.00 0.00 39.92 6.46
380 384 2.981977 TTCTTGGCTTTCGTCCGCGT 62.982 55.000 4.92 0.00 39.49 6.01
381 385 3.011760 CTTGGCTTTCGTCCGCGTC 62.012 63.158 4.92 0.00 39.49 5.19
382 386 3.509137 TTGGCTTTCGTCCGCGTCT 62.509 57.895 4.92 0.00 39.49 4.18
383 387 3.179939 GGCTTTCGTCCGCGTCTC 61.180 66.667 4.92 0.00 39.49 3.36
384 388 3.533691 GCTTTCGTCCGCGTCTCG 61.534 66.667 4.92 6.93 39.49 4.04
394 406 2.152699 CGCGTCTCGGACATGTGTC 61.153 63.158 1.15 4.58 44.04 3.67
407 419 1.836166 CATGTGTCCTCCACTCCTCAT 59.164 52.381 0.00 0.00 44.81 2.90
418 430 2.502947 CCACTCCTCATGATTCCACTCA 59.497 50.000 0.00 0.00 0.00 3.41
420 432 4.566278 CCACTCCTCATGATTCCACTCAAA 60.566 45.833 0.00 0.00 0.00 2.69
421 433 5.005740 CACTCCTCATGATTCCACTCAAAA 58.994 41.667 0.00 0.00 0.00 2.44
424 436 6.723052 ACTCCTCATGATTCCACTCAAAATTT 59.277 34.615 0.00 0.00 0.00 1.82
425 437 7.234166 ACTCCTCATGATTCCACTCAAAATTTT 59.766 33.333 0.00 0.00 0.00 1.82
426 438 7.380536 TCCTCATGATTCCACTCAAAATTTTG 58.619 34.615 22.40 22.40 39.48 2.44
427 439 7.015487 TCCTCATGATTCCACTCAAAATTTTGT 59.985 33.333 25.98 9.17 39.18 2.83
428 440 7.117236 CCTCATGATTCCACTCAAAATTTTGTG 59.883 37.037 25.98 25.11 39.18 3.33
429 441 6.424509 TCATGATTCCACTCAAAATTTTGTGC 59.575 34.615 25.98 12.73 39.18 4.57
430 442 5.668471 TGATTCCACTCAAAATTTTGTGCA 58.332 33.333 25.98 14.70 39.18 4.57
431 443 6.111382 TGATTCCACTCAAAATTTTGTGCAA 58.889 32.000 25.98 17.88 39.18 4.08
469 481 7.827819 TGGAAAGTTATTCTCGTAACATCAG 57.172 36.000 0.00 0.00 37.10 2.90
470 482 7.383687 TGGAAAGTTATTCTCGTAACATCAGT 58.616 34.615 0.00 0.00 37.10 3.41
490 502 9.398170 CATCAGTTATGTTGTAAAAAGGTGAAG 57.602 33.333 0.00 0.00 0.00 3.02
493 505 8.402472 CAGTTATGTTGTAAAAAGGTGAAGACA 58.598 33.333 0.00 0.00 0.00 3.41
494 506 8.621286 AGTTATGTTGTAAAAAGGTGAAGACAG 58.379 33.333 0.00 0.00 0.00 3.51
497 509 7.639113 TGTTGTAAAAAGGTGAAGACAGAAT 57.361 32.000 0.00 0.00 0.00 2.40
498 510 8.062065 TGTTGTAAAAAGGTGAAGACAGAATT 57.938 30.769 0.00 0.00 0.00 2.17
499 511 8.527810 TGTTGTAAAAAGGTGAAGACAGAATTT 58.472 29.630 0.00 0.00 0.00 1.82
500 512 9.366216 GTTGTAAAAAGGTGAAGACAGAATTTT 57.634 29.630 0.00 0.00 0.00 1.82
501 513 9.936759 TTGTAAAAAGGTGAAGACAGAATTTTT 57.063 25.926 0.00 0.00 34.10 1.94
538 550 5.919196 CATCTATTGCAAAAACAAACCTGC 58.081 37.500 1.71 0.00 32.27 4.85
539 551 5.016051 TCTATTGCAAAAACAAACCTGCA 57.984 34.783 1.71 0.00 42.79 4.41
542 554 3.325293 TGCAAAAACAAACCTGCAAGA 57.675 38.095 0.00 0.00 41.61 3.02
543 555 3.668447 TGCAAAAACAAACCTGCAAGAA 58.332 36.364 0.00 0.00 41.61 2.52
544 556 3.434984 TGCAAAAACAAACCTGCAAGAAC 59.565 39.130 0.00 0.00 41.61 3.01
545 557 3.684305 GCAAAAACAAACCTGCAAGAACT 59.316 39.130 0.00 0.00 34.07 3.01
547 559 4.535526 AAAACAAACCTGCAAGAACTGT 57.464 36.364 0.00 0.00 34.07 3.55
548 560 5.652994 AAAACAAACCTGCAAGAACTGTA 57.347 34.783 0.00 0.00 34.07 2.74
564 576 2.093890 CTGTATTGCAATGGTGGAGCA 58.906 47.619 22.27 8.05 36.32 4.26
567 579 1.855295 ATTGCAATGGTGGAGCATCA 58.145 45.000 12.09 0.00 38.19 3.07
571 583 2.029623 GCAATGGTGGAGCATCAGATT 58.970 47.619 0.00 0.00 36.25 2.40
581 593 3.345508 AGCATCAGATTTGACAGCTCA 57.654 42.857 8.66 0.00 41.51 4.26
622 634 2.842394 AAGATCAGCAGGCGGACACG 62.842 60.000 0.00 0.00 44.63 4.49
629 641 3.299977 AGGCGGACACGTAGCACA 61.300 61.111 0.00 0.00 43.45 4.57
631 643 3.110178 GCGGACACGTAGCACACC 61.110 66.667 0.00 0.00 43.45 4.16
638 650 1.148310 CACGTAGCACACCCAGAAAG 58.852 55.000 0.00 0.00 0.00 2.62
641 653 2.158871 ACGTAGCACACCCAGAAAGAAA 60.159 45.455 0.00 0.00 0.00 2.52
642 654 2.875933 CGTAGCACACCCAGAAAGAAAA 59.124 45.455 0.00 0.00 0.00 2.29
643 655 3.314080 CGTAGCACACCCAGAAAGAAAAA 59.686 43.478 0.00 0.00 0.00 1.94
657 669 4.097218 AAAAAGCCCGCTCTTCCC 57.903 55.556 0.00 0.00 0.00 3.97
658 670 1.460699 AAAAAGCCCGCTCTTCCCT 59.539 52.632 0.00 0.00 0.00 4.20
663 675 1.118356 AGCCCGCTCTTCCCTCTATG 61.118 60.000 0.00 0.00 0.00 2.23
664 676 1.403687 GCCCGCTCTTCCCTCTATGT 61.404 60.000 0.00 0.00 0.00 2.29
675 687 8.994170 GCTCTTCCCTCTATGTCAAAATATAAC 58.006 37.037 0.00 0.00 0.00 1.89
769 782 1.187567 GCTTGCCACCCCTTGTCAAT 61.188 55.000 0.00 0.00 0.00 2.57
791 804 8.670135 TCAATTGAACGTTCGTTGGATAATAAT 58.330 29.630 29.81 16.88 0.00 1.28
818 831 9.855021 AACAATACCAAAAGAAAATAAGATCCG 57.145 29.630 0.00 0.00 0.00 4.18
819 832 9.238368 ACAATACCAAAAGAAAATAAGATCCGA 57.762 29.630 0.00 0.00 0.00 4.55
821 834 6.196079 ACCAAAAGAAAATAAGATCCGAGC 57.804 37.500 0.00 0.00 0.00 5.03
822 835 5.125578 ACCAAAAGAAAATAAGATCCGAGCC 59.874 40.000 0.00 0.00 0.00 4.70
824 837 3.113260 AGAAAATAAGATCCGAGCCCG 57.887 47.619 0.00 0.00 0.00 6.13
825 838 2.698797 AGAAAATAAGATCCGAGCCCGA 59.301 45.455 0.00 0.00 38.22 5.14
826 839 2.821991 AAATAAGATCCGAGCCCGAG 57.178 50.000 0.00 0.00 38.22 4.63
827 840 1.705873 AATAAGATCCGAGCCCGAGT 58.294 50.000 0.00 0.00 38.22 4.18
832 845 1.076923 ATCCGAGCCCGAGTACTGT 60.077 57.895 0.00 0.00 38.22 3.55
850 863 1.194997 TGTAAAACCCGTTCGCGATTG 59.805 47.619 10.88 5.22 44.71 2.67
851 864 0.166379 TAAAACCCGTTCGCGATTGC 59.834 50.000 10.88 2.36 44.71 3.56
907 930 1.813728 GCCGCGGCCTAGTACCTATT 61.814 60.000 39.89 0.00 34.56 1.73
918 941 0.395686 GTACCTATTTCGGCCTCCCC 59.604 60.000 0.00 0.00 0.00 4.81
919 942 0.765519 TACCTATTTCGGCCTCCCCC 60.766 60.000 0.00 0.00 0.00 5.40
920 943 1.770518 CCTATTTCGGCCTCCCCCT 60.771 63.158 0.00 0.00 0.00 4.79
921 944 1.755384 CTATTTCGGCCTCCCCCTC 59.245 63.158 0.00 0.00 0.00 4.30
922 945 1.768888 TATTTCGGCCTCCCCCTCC 60.769 63.158 0.00 0.00 0.00 4.30
1384 1407 2.516225 GATAACGCACCCAGGGGC 60.516 66.667 11.37 9.72 39.32 5.80
1403 1428 4.436998 GTGGGACTCTGGGCGTCG 62.437 72.222 0.00 0.00 32.24 5.12
1404 1429 4.988716 TGGGACTCTGGGCGTCGT 62.989 66.667 0.00 0.00 32.24 4.34
1405 1430 4.131088 GGGACTCTGGGCGTCGTC 62.131 72.222 0.00 0.00 32.24 4.20
1539 1564 2.409870 GGGTACGACGATGACCGGT 61.410 63.158 6.92 6.92 43.93 5.28
1592 1625 4.806640 TTTGCCCTTCATTGAGAATTCC 57.193 40.909 0.65 0.00 35.25 3.01
1604 1637 9.650714 TTCATTGAGAATTCCATCCTATCAATT 57.349 29.630 11.89 0.00 34.58 2.32
1729 1771 4.216257 CAGTTCGAAATTTGACCACCTGAT 59.784 41.667 0.00 0.00 0.00 2.90
1735 1777 7.505258 TCGAAATTTGACCACCTGATCATATA 58.495 34.615 0.00 0.00 0.00 0.86
1736 1778 8.156820 TCGAAATTTGACCACCTGATCATATAT 58.843 33.333 0.00 0.00 0.00 0.86
1737 1779 8.786898 CGAAATTTGACCACCTGATCATATATT 58.213 33.333 0.00 0.00 0.00 1.28
1747 1789 9.823647 CCACCTGATCATATATTTATCTACCAC 57.176 37.037 0.00 0.00 0.00 4.16
1809 1852 4.013267 AGACTCCTTGTTCATTCAGTGG 57.987 45.455 0.00 0.00 0.00 4.00
2005 2056 1.922447 TCCTGGGCACATGTAGGAATT 59.078 47.619 11.89 0.00 36.44 2.17
2156 2207 3.681594 GCACGTTGGATCCTTGATTCCTA 60.682 47.826 14.23 0.00 0.00 2.94
2211 2263 4.152580 GCTCTTTTTACAGTCAGCACTACC 59.847 45.833 0.00 0.00 0.00 3.18
2466 2519 4.096833 TCCACTATTTTGATGTGCATGCTC 59.903 41.667 20.33 16.39 0.00 4.26
2531 2584 8.438676 AAACCTTGAGATATATGTAGTTGTGC 57.561 34.615 0.00 0.00 0.00 4.57
2673 2730 4.340097 TCGTTGGTACTTGTTCAGAAGAGA 59.660 41.667 0.00 0.00 0.00 3.10
2720 2777 6.989659 TGTTTGGAGTAGTCGAGTTAAATCT 58.010 36.000 0.00 0.00 0.00 2.40
2882 2941 7.061441 GTGTCATTCAAACTGCATCAATTAGTG 59.939 37.037 0.00 0.00 0.00 2.74
2949 3010 8.772705 CACCATATTTTGCAATTGTACTTGTTT 58.227 29.630 7.40 0.00 0.00 2.83
2950 3011 9.336171 ACCATATTTTGCAATTGTACTTGTTTT 57.664 25.926 7.40 0.00 0.00 2.43
2972 3034 7.415592 TTTATTGTTTGCATGATACCATCCA 57.584 32.000 0.00 0.00 0.00 3.41
2994 3056 6.888088 TCCATGATTTCTCAAGAACACATGAT 59.112 34.615 24.30 6.18 42.95 2.45
3176 3238 5.229423 TGTTGATTCCTTTTGTGCTATTGC 58.771 37.500 0.00 0.00 40.20 3.56
3443 3507 2.969950 ACCCCTTTGCCTTTTTCCTTAC 59.030 45.455 0.00 0.00 0.00 2.34
3468 3532 7.554118 ACGTCTGATTCATGATTTGTCCTAAAT 59.446 33.333 0.00 0.00 0.00 1.40
3500 3564 7.707774 TTTTGCCTGCTAAAGATTTTTGTAC 57.292 32.000 0.00 0.00 0.00 2.90
3501 3565 6.648879 TTGCCTGCTAAAGATTTTTGTACT 57.351 33.333 0.00 0.00 0.00 2.73
3502 3566 6.254281 TGCCTGCTAAAGATTTTTGTACTC 57.746 37.500 0.00 0.00 0.00 2.59
3503 3567 5.183140 TGCCTGCTAAAGATTTTTGTACTCC 59.817 40.000 0.00 0.00 0.00 3.85
3504 3568 5.393135 GCCTGCTAAAGATTTTTGTACTCCC 60.393 44.000 0.00 0.00 0.00 4.30
3505 3569 5.946377 CCTGCTAAAGATTTTTGTACTCCCT 59.054 40.000 0.00 0.00 0.00 4.20
3506 3570 6.094186 CCTGCTAAAGATTTTTGTACTCCCTC 59.906 42.308 0.00 0.00 0.00 4.30
3507 3571 5.944007 TGCTAAAGATTTTTGTACTCCCTCC 59.056 40.000 0.00 0.00 0.00 4.30
3508 3572 5.064834 GCTAAAGATTTTTGTACTCCCTCCG 59.935 44.000 0.00 0.00 0.00 4.63
3509 3573 4.635699 AAGATTTTTGTACTCCCTCCGT 57.364 40.909 0.00 0.00 0.00 4.69
3510 3574 4.203654 AGATTTTTGTACTCCCTCCGTC 57.796 45.455 0.00 0.00 0.00 4.79
3511 3575 2.845363 TTTTTGTACTCCCTCCGTCC 57.155 50.000 0.00 0.00 0.00 4.79
3512 3576 0.978907 TTTTGTACTCCCTCCGTCCC 59.021 55.000 0.00 0.00 0.00 4.46
3513 3577 0.178926 TTTGTACTCCCTCCGTCCCA 60.179 55.000 0.00 0.00 0.00 4.37
3514 3578 0.178926 TTGTACTCCCTCCGTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
3515 3579 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
3516 3580 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
3517 3581 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
3518 3582 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
3519 3583 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
3520 3584 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
3521 3585 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
3522 3586 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
3523 3587 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
3524 3588 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3525 3589 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
3526 3590 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3527 3591 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3528 3592 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
3529 3593 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
3530 3594 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
3531 3595 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
3532 3596 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
3533 3597 8.082242 CGTCCCAAAATTCTTGTCTTAGATTTT 58.918 33.333 0.00 0.00 32.19 1.82
3534 3598 9.764363 GTCCCAAAATTCTTGTCTTAGATTTTT 57.236 29.630 0.00 0.00 37.82 1.94
3535 3599 9.762933 TCCCAAAATTCTTGTCTTAGATTTTTG 57.237 29.630 17.94 17.94 44.80 2.44
3536 3600 9.546428 CCCAAAATTCTTGTCTTAGATTTTTGT 57.454 29.630 20.57 0.00 44.34 2.83
3544 3608 9.582431 TCTTGTCTTAGATTTTTGTAGATACGG 57.418 33.333 0.00 0.00 0.00 4.02
3545 3609 9.582431 CTTGTCTTAGATTTTTGTAGATACGGA 57.418 33.333 0.00 0.00 0.00 4.69
3547 3611 9.529325 TGTCTTAGATTTTTGTAGATACGGATG 57.471 33.333 0.00 0.00 0.00 3.51
3548 3612 9.530633 GTCTTAGATTTTTGTAGATACGGATGT 57.469 33.333 0.00 0.00 0.00 3.06
3581 3645 8.547967 ACTAAAATGTGACTTGATACATTCGT 57.452 30.769 0.00 0.00 44.32 3.85
3582 3646 9.647797 ACTAAAATGTGACTTGATACATTCGTA 57.352 29.630 0.00 0.00 44.32 3.43
3589 3653 9.297586 TGTGACTTGATACATTCGTATTTAGAC 57.702 33.333 0.00 0.00 38.48 2.59
3590 3654 9.297586 GTGACTTGATACATTCGTATTTAGACA 57.702 33.333 0.00 0.00 38.48 3.41
3591 3655 9.863845 TGACTTGATACATTCGTATTTAGACAA 57.136 29.630 0.00 0.00 38.48 3.18
3604 3668 9.483916 TCGTATTTAGACAAATTCAAGACAAGA 57.516 29.630 0.00 0.00 35.88 3.02
3615 3679 6.729690 ATTCAAGACAAGAATTTTGGGACA 57.270 33.333 5.68 0.00 31.99 4.02
3616 3680 5.772825 TCAAGACAAGAATTTTGGGACAG 57.227 39.130 5.68 0.00 42.39 3.51
3617 3681 5.445069 TCAAGACAAGAATTTTGGGACAGA 58.555 37.500 5.68 0.00 42.39 3.41
3618 3682 5.532406 TCAAGACAAGAATTTTGGGACAGAG 59.468 40.000 5.68 0.00 42.39 3.35
3619 3683 4.401925 AGACAAGAATTTTGGGACAGAGG 58.598 43.478 5.68 0.00 42.39 3.69
3620 3684 3.500343 ACAAGAATTTTGGGACAGAGGG 58.500 45.455 5.68 0.00 42.39 4.30
3621 3685 3.140144 ACAAGAATTTTGGGACAGAGGGA 59.860 43.478 5.68 0.00 42.39 4.20
3819 3886 7.540400 TGTTTTAGTGTGTTTGTTCACTCATTG 59.460 33.333 1.08 0.00 42.77 2.82
3825 3892 3.947196 TGTTTGTTCACTCATTGCAGTCT 59.053 39.130 0.00 0.00 0.00 3.24
3988 4055 6.924612 TGTTGACCAATCTGAATTGAACATTG 59.075 34.615 0.00 0.00 44.25 2.82
3992 4059 7.448161 TGACCAATCTGAATTGAACATTGTACT 59.552 33.333 0.00 0.00 44.25 2.73
4082 4149 1.066002 GCTATGTTGATGCACGCCAAT 59.934 47.619 0.00 0.00 0.00 3.16
4162 4230 4.447365 GCAAGCATGCGTCTGAAC 57.553 55.556 13.01 0.00 43.83 3.18
4165 4233 0.451628 CAAGCATGCGTCTGAACACG 60.452 55.000 13.01 0.00 42.95 4.49
4187 4255 3.426695 GGAGTTGCTTGATTTGATGTCCG 60.427 47.826 0.00 0.00 0.00 4.79
4232 4309 6.692486 TGAACAAATCTGAGAAGACTCCTAC 58.308 40.000 0.00 0.00 41.99 3.18
4245 4322 5.564048 AGACTCCTACTGTAGTTTAAGCG 57.436 43.478 13.42 0.00 0.00 4.68
4309 4387 4.041691 TCAGTAGCTTTAGGCACCTTTCTT 59.958 41.667 0.00 0.00 44.79 2.52
4510 4589 4.987912 GCTGAGAGCAGGTAATCATTACTC 59.012 45.833 7.49 0.00 41.89 2.59
4673 4766 4.148128 AGAATGAGGACTGGTATGCTTG 57.852 45.455 0.00 0.00 0.00 4.01
4674 4767 3.521126 AGAATGAGGACTGGTATGCTTGT 59.479 43.478 0.00 0.00 0.00 3.16
4701 4794 7.087409 TGATGTAATTCCATGTGCTAACTTG 57.913 36.000 0.00 0.00 0.00 3.16
4911 5005 9.180678 GTTTTGGTTGTAACATCTCTTTACATG 57.819 33.333 0.00 0.00 38.81 3.21
4912 5006 6.494893 TGGTTGTAACATCTCTTTACATGC 57.505 37.500 0.00 0.00 38.81 4.06
6107 6336 3.329386 TCTGCAGCAGTAAGAATCACAC 58.671 45.455 22.10 0.00 32.61 3.82
6197 6426 8.450964 GCAAGTTTTATGTATTTGCTCTACTCA 58.549 33.333 0.66 0.00 40.58 3.41
6268 6499 7.729124 TTAGTCTGCACTAATACCCTACTTT 57.271 36.000 0.00 0.00 39.74 2.66
6312 6627 4.021368 TGTCTCTTGCCTTCCTGTTACTAC 60.021 45.833 0.00 0.00 0.00 2.73
6316 6631 6.034161 TCTTGCCTTCCTGTTACTACTTAC 57.966 41.667 0.00 0.00 0.00 2.34
6318 6633 6.950041 TCTTGCCTTCCTGTTACTACTTACTA 59.050 38.462 0.00 0.00 0.00 1.82
6319 6634 6.770746 TGCCTTCCTGTTACTACTTACTAG 57.229 41.667 0.00 0.00 0.00 2.57
6320 6635 6.251471 TGCCTTCCTGTTACTACTTACTAGT 58.749 40.000 0.00 0.00 39.24 2.57
6321 6636 6.723052 TGCCTTCCTGTTACTACTTACTAGTT 59.277 38.462 0.00 0.00 36.95 2.24
6392 6707 7.041984 GGACAATCTTGATAAAACGATCCTACC 60.042 40.741 0.00 0.00 0.00 3.18
6617 6932 1.304282 GGCTGAATTCCCTGCTCCA 59.696 57.895 2.27 0.00 0.00 3.86
6667 6982 4.025979 CGGGTACGTGAAAAGCTATGAATC 60.026 45.833 0.00 0.00 34.81 2.52
6999 7351 8.894768 ATTTGCTCTAGATATGAACTGTTACC 57.105 34.615 0.00 0.00 0.00 2.85
7000 7352 7.418337 TTGCTCTAGATATGAACTGTTACCA 57.582 36.000 0.00 0.00 0.00 3.25
7001 7353 7.043961 TGCTCTAGATATGAACTGTTACCAG 57.956 40.000 0.00 0.00 44.68 4.00
7002 7354 5.923684 GCTCTAGATATGAACTGTTACCAGC 59.076 44.000 0.00 0.00 42.81 4.85
7003 7355 6.461648 GCTCTAGATATGAACTGTTACCAGCA 60.462 42.308 0.00 0.00 42.81 4.41
7004 7356 7.418337 TCTAGATATGAACTGTTACCAGCAA 57.582 36.000 0.00 0.00 42.81 3.91
7005 7357 8.023021 TCTAGATATGAACTGTTACCAGCAAT 57.977 34.615 0.00 0.00 42.81 3.56
7006 7358 8.144478 TCTAGATATGAACTGTTACCAGCAATC 58.856 37.037 0.00 0.00 42.81 2.67
7007 7359 5.755375 AGATATGAACTGTTACCAGCAATCG 59.245 40.000 0.00 0.00 42.81 3.34
7008 7360 3.394674 TGAACTGTTACCAGCAATCGA 57.605 42.857 0.00 0.00 42.81 3.59
7009 7361 3.734463 TGAACTGTTACCAGCAATCGAA 58.266 40.909 0.00 0.00 42.81 3.71
7010 7362 4.323417 TGAACTGTTACCAGCAATCGAAT 58.677 39.130 0.00 0.00 42.81 3.34
7011 7363 5.483811 TGAACTGTTACCAGCAATCGAATA 58.516 37.500 0.00 0.00 42.81 1.75
7012 7364 5.350365 TGAACTGTTACCAGCAATCGAATAC 59.650 40.000 0.00 0.00 42.81 1.89
7013 7365 4.189231 ACTGTTACCAGCAATCGAATACC 58.811 43.478 0.00 0.00 42.81 2.73
7014 7366 4.188462 CTGTTACCAGCAATCGAATACCA 58.812 43.478 0.00 0.00 0.00 3.25
7015 7367 4.776349 TGTTACCAGCAATCGAATACCAT 58.224 39.130 0.00 0.00 0.00 3.55
7016 7368 4.574421 TGTTACCAGCAATCGAATACCATG 59.426 41.667 0.00 0.00 0.00 3.66
7017 7369 3.281727 ACCAGCAATCGAATACCATGT 57.718 42.857 0.00 0.00 0.00 3.21
7018 7370 3.206150 ACCAGCAATCGAATACCATGTC 58.794 45.455 0.00 0.00 0.00 3.06
7019 7371 2.221749 CCAGCAATCGAATACCATGTCG 59.778 50.000 0.00 0.00 38.62 4.35
7020 7372 1.867233 AGCAATCGAATACCATGTCGC 59.133 47.619 0.00 0.00 37.19 5.19
7021 7373 1.867233 GCAATCGAATACCATGTCGCT 59.133 47.619 0.00 0.00 37.19 4.93
7022 7374 3.057019 GCAATCGAATACCATGTCGCTA 58.943 45.455 0.00 0.00 37.19 4.26
7023 7375 3.679980 GCAATCGAATACCATGTCGCTAT 59.320 43.478 0.00 0.00 37.19 2.97
7024 7376 4.862574 GCAATCGAATACCATGTCGCTATA 59.137 41.667 0.00 0.00 37.19 1.31
7215 8097 6.953101 TGAATTTTACCATGCTACTCCACTA 58.047 36.000 0.00 0.00 0.00 2.74
7236 8118 7.389053 CCACTATATCTTAATCCTTTGCTGTCC 59.611 40.741 0.00 0.00 0.00 4.02
7237 8119 7.116948 CACTATATCTTAATCCTTTGCTGTCCG 59.883 40.741 0.00 0.00 0.00 4.79
7292 8174 3.133721 GCTATAATGATCTCGATGCCCCT 59.866 47.826 0.00 0.00 0.00 4.79
7562 8448 6.899393 TTATGCAGTCACAGAAAAGGATTT 57.101 33.333 0.00 0.00 42.41 2.17
7564 8450 8.579850 TTATGCAGTCACAGAAAAGGATTTAT 57.420 30.769 0.00 0.00 37.28 1.40
7565 8451 6.899393 TGCAGTCACAGAAAAGGATTTATT 57.101 33.333 0.00 0.00 37.28 1.40
7766 8654 1.924524 ACACGTGTGTCGAGTTTCAAG 59.075 47.619 22.71 0.00 40.24 3.02
7825 8713 9.840427 AATAAATTCGTGGAGAACATTGTAAAG 57.160 29.630 0.00 0.00 42.39 1.85
7826 8714 4.742438 TTCGTGGAGAACATTGTAAAGC 57.258 40.909 0.00 0.00 33.14 3.51
7827 8715 4.002906 TCGTGGAGAACATTGTAAAGCT 57.997 40.909 0.00 0.00 0.00 3.74
7828 8716 3.745975 TCGTGGAGAACATTGTAAAGCTG 59.254 43.478 0.00 0.00 0.00 4.24
7829 8717 3.498397 CGTGGAGAACATTGTAAAGCTGT 59.502 43.478 0.00 0.00 0.00 4.40
7830 8718 4.024048 CGTGGAGAACATTGTAAAGCTGTT 60.024 41.667 0.00 0.00 35.89 3.16
7831 8719 5.452777 GTGGAGAACATTGTAAAGCTGTTC 58.547 41.667 6.55 6.55 45.75 3.18
7836 8724 6.680055 GAACATTGTAAAGCTGTTCACATG 57.320 37.500 9.18 0.00 45.09 3.21
7837 8725 4.549458 ACATTGTAAAGCTGTTCACATGC 58.451 39.130 0.00 0.00 0.00 4.06
7838 8726 4.037803 ACATTGTAAAGCTGTTCACATGCA 59.962 37.500 0.00 0.00 0.00 3.96
7839 8727 4.852134 TTGTAAAGCTGTTCACATGCAT 57.148 36.364 0.00 0.00 0.00 3.96
7840 8728 5.956068 TTGTAAAGCTGTTCACATGCATA 57.044 34.783 0.00 0.00 0.00 3.14
7841 8729 6.513806 TTGTAAAGCTGTTCACATGCATAT 57.486 33.333 0.00 0.00 0.00 1.78
7842 8730 6.513806 TGTAAAGCTGTTCACATGCATATT 57.486 33.333 0.00 0.00 0.00 1.28
7843 8731 6.554419 TGTAAAGCTGTTCACATGCATATTC 58.446 36.000 0.00 0.00 0.00 1.75
7844 8732 3.957671 AGCTGTTCACATGCATATTCG 57.042 42.857 0.00 0.00 0.00 3.34
7845 8733 2.032550 AGCTGTTCACATGCATATTCGC 59.967 45.455 0.00 0.00 0.00 4.70
7846 8734 2.032550 GCTGTTCACATGCATATTCGCT 59.967 45.455 0.00 0.00 0.00 4.93
7847 8735 3.248363 GCTGTTCACATGCATATTCGCTA 59.752 43.478 0.00 0.00 0.00 4.26
7848 8736 4.610007 GCTGTTCACATGCATATTCGCTAG 60.610 45.833 0.00 0.00 0.00 3.42
7879 8767 1.890894 CGACTGACGGGGAGAACAT 59.109 57.895 0.00 0.00 38.46 2.71
7885 8773 3.000727 CTGACGGGGAGAACATTGTAAC 58.999 50.000 0.00 0.00 0.00 2.50
7888 8776 1.674817 CGGGGAGAACATTGTAACGCT 60.675 52.381 0.00 0.00 0.00 5.07
7891 8779 3.270877 GGGAGAACATTGTAACGCTGAT 58.729 45.455 0.00 0.00 0.00 2.90
7929 8817 2.592102 TTTGATGAAGGGAAGCAGCT 57.408 45.000 0.00 0.00 0.00 4.24
7931 8819 0.694771 TGATGAAGGGAAGCAGCTGT 59.305 50.000 16.64 0.00 0.00 4.40
8029 8917 4.939509 TTTTCGCTGATAACTACCAAGC 57.060 40.909 0.00 0.00 0.00 4.01
8036 8924 1.350310 ATAACTACCAAGCCCGGGGG 61.350 60.000 25.28 18.19 38.57 5.40
8037 8925 2.769145 TAACTACCAAGCCCGGGGGT 62.769 60.000 25.28 23.28 38.70 4.95
8075 8964 3.304659 CCAAATCGCAGTGTGCTTAAAGT 60.305 43.478 0.00 0.00 42.25 2.66
8090 8979 8.457261 TGTGCTTAAAGTTTAAACCGTTTTCTA 58.543 29.630 14.72 1.76 0.00 2.10
8107 8996 5.387113 TTTCTAACAGATATGGCCCACAT 57.613 39.130 0.00 0.00 43.68 3.21
8110 8999 2.353357 ACAGATATGGCCCACATGTG 57.647 50.000 19.31 19.31 40.82 3.21
8118 9007 1.678970 GCCCACATGTGAGGTTCCC 60.679 63.158 27.46 9.58 0.00 3.97
8126 9015 1.380302 GTGAGGTTCCCTGTGGCAT 59.620 57.895 0.00 0.00 31.76 4.40
8139 9028 1.069568 TGTGGCATAAAAGTCAACGCG 60.070 47.619 3.53 3.53 0.00 6.01
8173 9062 6.285990 ACAGTTAAGTTGACCGTTATGACTT 58.714 36.000 0.00 0.00 35.07 3.01
8192 9081 3.189336 TGGGGCCCACATGTCATT 58.811 55.556 24.76 0.00 0.00 2.57
8193 9082 2.403348 TGGGGCCCACATGTCATTA 58.597 52.632 24.76 0.00 0.00 1.90
8241 9130 9.093458 AGAAACAATCAATTTTTATCCCTGACT 57.907 29.630 0.00 0.00 0.00 3.41
8265 9156 1.595993 CCGTCATCCACCTCTCACGT 61.596 60.000 0.00 0.00 0.00 4.49
8271 9162 2.573869 CACCTCTCACGTGCGGAT 59.426 61.111 20.35 6.53 0.00 4.18
8397 9288 4.344865 ACCCGCCGCATGTTCCTT 62.345 61.111 0.00 0.00 0.00 3.36
8398 9289 3.508840 CCCGCCGCATGTTCCTTC 61.509 66.667 0.00 0.00 0.00 3.46
8403 9294 0.960364 GCCGCATGTTCCTTCCTTCA 60.960 55.000 0.00 0.00 0.00 3.02
8427 9318 1.153568 CTCAAAGATCGCCGGCTGA 60.154 57.895 26.68 23.03 0.00 4.26
8467 9358 4.790962 CTCAGCCTGGCACCGCAT 62.791 66.667 22.65 0.00 0.00 4.73
8519 9410 4.153330 TCCGCCTACCTCTCCCCC 62.153 72.222 0.00 0.00 0.00 5.40
8541 9432 3.809775 GGCAGCCGTATTGCGCAA 61.810 61.111 27.24 27.24 42.42 4.85
8549 9440 2.106683 GTATTGCGCAACCGGCTCT 61.107 57.895 27.64 10.42 41.67 4.09
8564 9455 1.264045 GCTCTCCCTCCTGCAAGAGT 61.264 60.000 11.35 0.00 38.01 3.24
8602 9494 3.082579 GCGTGCTCTCCCGGAATCT 62.083 63.158 0.73 0.00 0.00 2.40
8603 9495 1.517832 CGTGCTCTCCCGGAATCTT 59.482 57.895 0.73 0.00 0.00 2.40
8609 9501 2.685743 TCCCGGAATCTTGGCGGA 60.686 61.111 0.73 0.00 0.00 5.54
8675 9567 0.606604 GTCGGGGAGAGCTACAACAA 59.393 55.000 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.107557 TCATGATGATGCTGGCACGT 60.108 50.000 0.00 0.00 0.00 4.49
1 2 0.586802 CTCATGATGATGCTGGCACG 59.413 55.000 0.00 0.00 0.00 5.34
2 3 0.311165 GCTCATGATGATGCTGGCAC 59.689 55.000 0.00 0.00 0.00 5.01
3 4 1.164041 CGCTCATGATGATGCTGGCA 61.164 55.000 12.59 0.00 0.00 4.92
4 5 1.164662 ACGCTCATGATGATGCTGGC 61.165 55.000 12.59 4.88 0.00 4.85
5 6 2.159327 TACGCTCATGATGATGCTGG 57.841 50.000 12.59 3.96 0.00 4.85
6 7 4.240096 TGTATACGCTCATGATGATGCTG 58.760 43.478 12.59 9.53 0.00 4.41
7 8 4.525912 TGTATACGCTCATGATGATGCT 57.474 40.909 12.59 5.36 0.00 3.79
8 9 4.866486 TGATGTATACGCTCATGATGATGC 59.134 41.667 0.00 1.30 0.00 3.91
9 10 6.098017 ACTGATGTATACGCTCATGATGATG 58.902 40.000 0.00 0.00 0.00 3.07
10 11 6.278172 ACTGATGTATACGCTCATGATGAT 57.722 37.500 0.00 0.00 0.00 2.45
11 12 5.712152 ACTGATGTATACGCTCATGATGA 57.288 39.130 0.00 0.00 0.00 2.92
12 13 5.347093 GGAACTGATGTATACGCTCATGATG 59.653 44.000 0.00 0.00 0.00 3.07
13 14 5.244851 AGGAACTGATGTATACGCTCATGAT 59.755 40.000 0.00 0.00 37.18 2.45
43 44 0.441533 CATGTGCTCGCTGACTTGTC 59.558 55.000 0.00 0.00 0.00 3.18
71 72 3.965258 TGCACATTGGGCCGGAGT 61.965 61.111 5.05 0.00 0.00 3.85
76 77 1.369091 CGTCTAGTGCACATTGGGCC 61.369 60.000 21.04 0.00 0.00 5.80
81 82 1.447838 CCGGCGTCTAGTGCACATT 60.448 57.895 21.04 0.92 0.00 2.71
82 83 2.184322 CCGGCGTCTAGTGCACAT 59.816 61.111 21.04 6.83 0.00 3.21
135 136 1.084370 CACTAGCGGTAGCCTTGTGC 61.084 60.000 21.11 0.00 46.67 4.57
206 208 2.493035 CAATTGCCACCCTTTTCCAAC 58.507 47.619 0.00 0.00 0.00 3.77
207 209 1.202746 GCAATTGCCACCCTTTTCCAA 60.203 47.619 20.06 0.00 34.31 3.53
208 210 0.396060 GCAATTGCCACCCTTTTCCA 59.604 50.000 20.06 0.00 34.31 3.53
222 225 4.499183 TGTCAGGAAAAACGTTTGCAATT 58.501 34.783 15.46 4.72 37.52 2.32
228 231 6.324042 ACGTAAATTGTCAGGAAAAACGTTT 58.676 32.000 7.96 7.96 37.76 3.60
241 244 9.478019 CATTATTCTCTCACAACGTAAATTGTC 57.522 33.333 0.00 0.00 40.89 3.18
251 255 8.388484 AGAATATGCCATTATTCTCTCACAAC 57.612 34.615 7.49 0.00 42.54 3.32
312 316 5.220643 CGTTTCCTCTTTTGCAGCAATTTTT 60.221 36.000 9.12 0.00 0.00 1.94
355 359 4.674362 GCGGACGAAAGCCAAGAAATTAAT 60.674 41.667 0.00 0.00 0.00 1.40
356 360 3.365565 GCGGACGAAAGCCAAGAAATTAA 60.366 43.478 0.00 0.00 0.00 1.40
357 361 2.160813 GCGGACGAAAGCCAAGAAATTA 59.839 45.455 0.00 0.00 0.00 1.40
358 362 1.068541 GCGGACGAAAGCCAAGAAATT 60.069 47.619 0.00 0.00 0.00 1.82
366 370 3.179939 GAGACGCGGACGAAAGCC 61.180 66.667 12.47 0.00 43.93 4.35
394 406 2.121948 TGGAATCATGAGGAGTGGAGG 58.878 52.381 0.09 0.00 0.00 4.30
396 408 2.768527 GAGTGGAATCATGAGGAGTGGA 59.231 50.000 0.09 0.00 0.00 4.02
399 411 4.916041 TTTGAGTGGAATCATGAGGAGT 57.084 40.909 0.09 0.00 0.00 3.85
407 419 5.668471 TGCACAAAATTTTGAGTGGAATCA 58.332 33.333 32.20 15.98 40.55 2.57
418 430 6.095160 ACATTGGTGATGTTGCACAAAATTTT 59.905 30.769 0.00 0.00 46.80 1.82
420 432 5.124645 ACATTGGTGATGTTGCACAAAATT 58.875 33.333 0.00 0.00 46.80 1.82
421 433 4.706035 ACATTGGTGATGTTGCACAAAAT 58.294 34.783 0.00 0.00 46.80 1.82
445 457 7.383687 ACTGATGTTACGAGAATAACTTTCCA 58.616 34.615 0.00 0.00 36.25 3.53
446 458 7.829378 ACTGATGTTACGAGAATAACTTTCC 57.171 36.000 0.00 0.00 36.25 3.13
469 481 8.617809 TCTGTCTTCACCTTTTTACAACATAAC 58.382 33.333 0.00 0.00 0.00 1.89
470 482 8.740123 TCTGTCTTCACCTTTTTACAACATAA 57.260 30.769 0.00 0.00 0.00 1.90
523 535 3.684305 AGTTCTTGCAGGTTTGTTTTTGC 59.316 39.130 0.00 0.00 37.09 3.68
530 542 3.983344 GCAATACAGTTCTTGCAGGTTTG 59.017 43.478 13.14 0.00 45.50 2.93
531 543 4.243007 GCAATACAGTTCTTGCAGGTTT 57.757 40.909 13.14 0.00 45.50 3.27
532 544 3.923017 GCAATACAGTTCTTGCAGGTT 57.077 42.857 13.14 0.00 45.50 3.50
537 549 3.922240 CACCATTGCAATACAGTTCTTGC 59.078 43.478 12.53 11.73 46.19 4.01
538 550 4.218200 TCCACCATTGCAATACAGTTCTTG 59.782 41.667 12.53 0.00 0.00 3.02
539 551 4.406456 TCCACCATTGCAATACAGTTCTT 58.594 39.130 12.53 0.00 0.00 2.52
541 553 3.428045 GCTCCACCATTGCAATACAGTTC 60.428 47.826 12.53 0.00 0.00 3.01
542 554 2.493278 GCTCCACCATTGCAATACAGTT 59.507 45.455 12.53 0.00 0.00 3.16
543 555 2.094675 GCTCCACCATTGCAATACAGT 58.905 47.619 12.53 7.34 0.00 3.55
544 556 2.093890 TGCTCCACCATTGCAATACAG 58.906 47.619 12.53 6.68 33.48 2.74
545 557 2.212812 TGCTCCACCATTGCAATACA 57.787 45.000 12.53 0.00 33.48 2.29
547 559 2.953648 CTGATGCTCCACCATTGCAATA 59.046 45.455 12.53 0.00 40.24 1.90
548 560 1.754803 CTGATGCTCCACCATTGCAAT 59.245 47.619 5.99 5.99 40.24 3.56
564 576 3.519579 CTCGTGAGCTGTCAAATCTGAT 58.480 45.455 0.00 0.00 33.27 2.90
581 593 0.813184 TAAAAGATCGGTCGGCTCGT 59.187 50.000 0.00 0.00 0.00 4.18
622 634 4.911514 TTTTTCTTTCTGGGTGTGCTAC 57.088 40.909 0.00 0.00 0.00 3.58
641 653 1.002011 GAGGGAAGAGCGGGCTTTT 60.002 57.895 0.00 0.00 0.00 2.27
642 654 0.617820 TAGAGGGAAGAGCGGGCTTT 60.618 55.000 0.00 0.00 0.00 3.51
643 655 0.399233 ATAGAGGGAAGAGCGGGCTT 60.399 55.000 0.00 0.00 0.00 4.35
644 656 1.118356 CATAGAGGGAAGAGCGGGCT 61.118 60.000 0.00 0.00 0.00 5.19
645 657 1.369321 CATAGAGGGAAGAGCGGGC 59.631 63.158 0.00 0.00 0.00 6.13
646 658 0.676736 GACATAGAGGGAAGAGCGGG 59.323 60.000 0.00 0.00 0.00 6.13
647 659 1.403814 TGACATAGAGGGAAGAGCGG 58.596 55.000 0.00 0.00 0.00 5.52
648 660 3.526931 TTTGACATAGAGGGAAGAGCG 57.473 47.619 0.00 0.00 0.00 5.03
649 661 8.994170 GTTATATTTTGACATAGAGGGAAGAGC 58.006 37.037 0.00 0.00 0.00 4.09
746 759 2.597510 AAGGGGTGGCAAGCGAAC 60.598 61.111 0.00 0.00 0.00 3.95
748 761 3.842925 GACAAGGGGTGGCAAGCGA 62.843 63.158 0.00 0.00 34.13 4.93
749 762 3.365265 GACAAGGGGTGGCAAGCG 61.365 66.667 0.00 0.00 34.13 4.68
750 763 2.203480 TGACAAGGGGTGGCAAGC 60.203 61.111 0.00 0.00 44.65 4.01
769 782 8.933807 TGTTATTATTATCCAACGAACGTTCAA 58.066 29.630 26.71 12.54 36.00 2.69
809 822 2.161030 GTACTCGGGCTCGGATCTTAT 58.839 52.381 5.94 0.00 36.95 1.73
812 825 0.820074 CAGTACTCGGGCTCGGATCT 60.820 60.000 5.94 0.00 36.95 2.75
813 826 1.102222 ACAGTACTCGGGCTCGGATC 61.102 60.000 5.94 0.00 36.95 3.36
814 827 0.182061 TACAGTACTCGGGCTCGGAT 59.818 55.000 5.94 0.00 36.95 4.18
815 828 0.035152 TTACAGTACTCGGGCTCGGA 60.035 55.000 5.94 0.00 36.95 4.55
818 831 2.614779 GGTTTTACAGTACTCGGGCTC 58.385 52.381 0.00 0.00 0.00 4.70
819 832 1.277273 GGGTTTTACAGTACTCGGGCT 59.723 52.381 0.00 0.00 0.00 5.19
821 834 1.273327 ACGGGTTTTACAGTACTCGGG 59.727 52.381 0.00 0.00 42.36 5.14
822 835 2.730550 ACGGGTTTTACAGTACTCGG 57.269 50.000 0.00 0.00 42.36 4.63
824 837 2.409715 GCGAACGGGTTTTACAGTACTC 59.590 50.000 0.00 0.00 0.00 2.59
825 838 2.407090 GCGAACGGGTTTTACAGTACT 58.593 47.619 0.00 0.00 0.00 2.73
826 839 1.124839 CGCGAACGGGTTTTACAGTAC 59.875 52.381 0.00 0.00 34.97 2.73
827 840 1.000827 TCGCGAACGGGTTTTACAGTA 60.001 47.619 6.20 0.00 40.63 2.74
832 845 0.166379 GCAATCGCGAACGGGTTTTA 59.834 50.000 15.24 0.00 40.63 1.52
868 881 1.206523 GCACGAGATAACTAACGGGC 58.793 55.000 0.00 0.00 46.90 6.13
918 941 3.610669 CGATGGAGCCGAGGGAGG 61.611 72.222 0.00 0.00 0.00 4.30
919 942 4.292178 GCGATGGAGCCGAGGGAG 62.292 72.222 0.00 0.00 0.00 4.30
1384 1407 3.302347 GACGCCCAGAGTCCCACAG 62.302 68.421 0.00 0.00 32.78 3.66
1539 1564 3.387091 ACGATGCCTGCCGTGGTA 61.387 61.111 0.00 0.00 37.64 3.25
1592 1625 8.970859 ACTTTTGGAGACTAATTGATAGGATG 57.029 34.615 0.00 0.00 35.81 3.51
1604 1637 7.395190 TGCGTATACTTACTTTTGGAGACTA 57.605 36.000 0.56 0.00 0.00 2.59
1747 1789 9.778993 AAGAAACGATGAATCATGATAACAAAG 57.221 29.630 9.04 12.16 0.00 2.77
1942 1985 7.178451 CCAGAAACCCAAAAGACTAACCATAAT 59.822 37.037 0.00 0.00 0.00 1.28
2156 2207 6.001449 TGCTGGTGGCTAATAAGAGTAATT 57.999 37.500 0.00 0.00 42.39 1.40
2211 2263 1.441311 GCCTTTTGTGGTGGTGGTG 59.559 57.895 0.00 0.00 0.00 4.17
2497 2550 9.354673 ACATATATCTCAAGGTTTTTACATGGG 57.645 33.333 0.00 0.00 0.00 4.00
2644 2698 7.972832 TCTGAACAAGTACCAACGAATAAAT 57.027 32.000 0.00 0.00 0.00 1.40
2673 2730 0.928505 TGGGCCATCCATTCATGTCT 59.071 50.000 0.00 0.00 41.46 3.41
2720 2777 8.239038 TGTTCACACCAGGTTGAAAAATATAA 57.761 30.769 14.98 0.00 0.00 0.98
2811 2870 4.892934 ACCAAATTGCTCTTCCTTGTACAA 59.107 37.500 8.28 8.28 0.00 2.41
2972 3034 8.051535 AGGTATCATGTGTTCTTGAGAAATCAT 58.948 33.333 0.00 1.53 35.58 2.45
3096 3158 9.705290 CATGTACACATATAGCACTTATACCAA 57.295 33.333 0.00 0.00 34.26 3.67
3443 3507 6.908870 TTAGGACAAATCATGAATCAGACG 57.091 37.500 0.00 0.00 0.00 4.18
3497 3561 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
3498 3562 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3499 3563 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
3500 3564 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
3501 3565 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
3502 3566 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
3503 3567 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
3504 3568 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3505 3569 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
3506 3570 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
3507 3571 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
3508 3572 9.764363 AAAAATCTAAGACAAGAATTTTGGGAC 57.236 29.630 0.20 0.00 37.26 4.46
3509 3573 9.762933 CAAAAATCTAAGACAAGAATTTTGGGA 57.237 29.630 14.85 0.00 44.85 4.37
3518 3582 9.582431 CCGTATCTACAAAAATCTAAGACAAGA 57.418 33.333 0.00 0.00 0.00 3.02
3519 3583 9.582431 TCCGTATCTACAAAAATCTAAGACAAG 57.418 33.333 0.00 0.00 0.00 3.16
3521 3585 9.529325 CATCCGTATCTACAAAAATCTAAGACA 57.471 33.333 0.00 0.00 0.00 3.41
3522 3586 9.530633 ACATCCGTATCTACAAAAATCTAAGAC 57.469 33.333 0.00 0.00 0.00 3.01
3555 3619 9.647797 ACGAATGTATCAAGTCACATTTTAGTA 57.352 29.630 1.86 0.00 43.58 1.82
3556 3620 8.547967 ACGAATGTATCAAGTCACATTTTAGT 57.452 30.769 1.86 1.50 43.58 2.24
3563 3627 9.297586 GTCTAAATACGAATGTATCAAGTCACA 57.702 33.333 0.00 0.00 40.42 3.58
3564 3628 9.297586 TGTCTAAATACGAATGTATCAAGTCAC 57.702 33.333 0.00 0.00 40.42 3.67
3565 3629 9.863845 TTGTCTAAATACGAATGTATCAAGTCA 57.136 29.630 0.00 0.00 40.42 3.41
3578 3642 9.483916 TCTTGTCTTGAATTTGTCTAAATACGA 57.516 29.630 0.00 0.00 35.50 3.43
3585 3649 9.748708 CCAAAATTCTTGTCTTGAATTTGTCTA 57.251 29.630 13.02 0.00 46.81 2.59
3586 3650 7.712205 CCCAAAATTCTTGTCTTGAATTTGTCT 59.288 33.333 13.02 0.00 46.81 3.41
3587 3651 7.710475 TCCCAAAATTCTTGTCTTGAATTTGTC 59.290 33.333 13.02 0.00 46.81 3.18
3588 3652 7.495606 GTCCCAAAATTCTTGTCTTGAATTTGT 59.504 33.333 13.02 4.15 46.81 2.83
3589 3653 7.495279 TGTCCCAAAATTCTTGTCTTGAATTTG 59.505 33.333 13.02 8.67 46.81 2.32
3591 3655 7.069826 TCTGTCCCAAAATTCTTGTCTTGAATT 59.930 33.333 0.00 0.00 43.44 2.17
3592 3656 6.550854 TCTGTCCCAAAATTCTTGTCTTGAAT 59.449 34.615 0.00 0.00 35.88 2.57
3593 3657 5.890985 TCTGTCCCAAAATTCTTGTCTTGAA 59.109 36.000 0.00 0.00 0.00 2.69
3594 3658 5.445069 TCTGTCCCAAAATTCTTGTCTTGA 58.555 37.500 0.00 0.00 0.00 3.02
3595 3659 5.278660 CCTCTGTCCCAAAATTCTTGTCTTG 60.279 44.000 0.00 0.00 0.00 3.02
3596 3660 4.829492 CCTCTGTCCCAAAATTCTTGTCTT 59.171 41.667 0.00 0.00 0.00 3.01
3597 3661 4.401925 CCTCTGTCCCAAAATTCTTGTCT 58.598 43.478 0.00 0.00 0.00 3.41
3598 3662 3.507622 CCCTCTGTCCCAAAATTCTTGTC 59.492 47.826 0.00 0.00 0.00 3.18
3599 3663 3.140144 TCCCTCTGTCCCAAAATTCTTGT 59.860 43.478 0.00 0.00 0.00 3.16
3600 3664 3.760684 CTCCCTCTGTCCCAAAATTCTTG 59.239 47.826 0.00 0.00 0.00 3.02
3601 3665 3.399305 ACTCCCTCTGTCCCAAAATTCTT 59.601 43.478 0.00 0.00 0.00 2.52
3602 3666 2.989571 ACTCCCTCTGTCCCAAAATTCT 59.010 45.455 0.00 0.00 0.00 2.40
3603 3667 3.441500 ACTCCCTCTGTCCCAAAATTC 57.558 47.619 0.00 0.00 0.00 2.17
3604 3668 6.848562 ATATACTCCCTCTGTCCCAAAATT 57.151 37.500 0.00 0.00 0.00 1.82
3605 3669 6.410853 CCAATATACTCCCTCTGTCCCAAAAT 60.411 42.308 0.00 0.00 0.00 1.82
3606 3670 5.104109 CCAATATACTCCCTCTGTCCCAAAA 60.104 44.000 0.00 0.00 0.00 2.44
3607 3671 4.412199 CCAATATACTCCCTCTGTCCCAAA 59.588 45.833 0.00 0.00 0.00 3.28
3608 3672 3.973973 CCAATATACTCCCTCTGTCCCAA 59.026 47.826 0.00 0.00 0.00 4.12
3609 3673 3.051341 ACCAATATACTCCCTCTGTCCCA 60.051 47.826 0.00 0.00 0.00 4.37
3610 3674 3.588569 ACCAATATACTCCCTCTGTCCC 58.411 50.000 0.00 0.00 0.00 4.46
3611 3675 5.395611 ACTACCAATATACTCCCTCTGTCC 58.604 45.833 0.00 0.00 0.00 4.02
3612 3676 6.778559 AGAACTACCAATATACTCCCTCTGTC 59.221 42.308 0.00 0.00 0.00 3.51
3613 3677 6.684538 AGAACTACCAATATACTCCCTCTGT 58.315 40.000 0.00 0.00 0.00 3.41
3614 3678 8.887264 ATAGAACTACCAATATACTCCCTCTG 57.113 38.462 0.00 0.00 0.00 3.35
3615 3679 8.679725 TGATAGAACTACCAATATACTCCCTCT 58.320 37.037 0.00 0.00 0.00 3.69
3616 3680 8.880991 TGATAGAACTACCAATATACTCCCTC 57.119 38.462 0.00 0.00 0.00 4.30
3617 3681 8.679725 TCTGATAGAACTACCAATATACTCCCT 58.320 37.037 0.00 0.00 0.00 4.20
3618 3682 8.880991 TCTGATAGAACTACCAATATACTCCC 57.119 38.462 0.00 0.00 0.00 4.30
3766 3831 9.187996 TGTCTATATGCATCCAATTCAGAAAAA 57.812 29.630 0.19 0.00 0.00 1.94
3767 3832 8.750515 TGTCTATATGCATCCAATTCAGAAAA 57.249 30.769 0.19 0.00 0.00 2.29
3819 3886 2.698855 ATGGACCACATACAGACTGC 57.301 50.000 1.25 0.00 38.26 4.40
3825 3892 7.402054 GGATATTTCCATATGGACCACATACA 58.598 38.462 24.47 4.08 45.39 2.29
3954 4021 9.739276 AATTCAGATTGGTCAACAAAGTATCTA 57.261 29.630 0.00 0.00 43.46 1.98
3988 4055 7.752695 ACTTACATAAAATTGCTGCTCAGTAC 58.247 34.615 0.00 0.00 0.00 2.73
3992 4059 7.109501 TCCTACTTACATAAAATTGCTGCTCA 58.890 34.615 0.00 0.00 0.00 4.26
4029 4096 3.876914 TGTGAAGTCTCCACATTTGTGTC 59.123 43.478 9.66 0.80 44.21 3.67
4134 4202 2.486918 GCATGCTTGCCAGAAAAGTTT 58.513 42.857 11.37 0.00 43.38 2.66
4162 4230 3.058016 ACATCAAATCAAGCAACTCCGTG 60.058 43.478 0.00 0.00 0.00 4.94
4165 4233 3.426695 CGGACATCAAATCAAGCAACTCC 60.427 47.826 0.00 0.00 0.00 3.85
4232 4309 7.731556 AAATACGAGTACGCTTAAACTACAG 57.268 36.000 0.00 0.00 43.96 2.74
4309 4387 4.425772 TGGATAGGTCCTGAAACTTGAGA 58.574 43.478 0.00 0.00 45.32 3.27
4673 4766 8.840321 AGTTAGCACATGGAATTACATCATTAC 58.160 33.333 0.00 0.00 0.00 1.89
4674 4767 8.978874 AGTTAGCACATGGAATTACATCATTA 57.021 30.769 0.00 0.00 0.00 1.90
4701 4794 4.187694 GCTATATGTATTCCTGCTGAGGC 58.812 47.826 0.00 0.00 39.57 4.70
5952 6181 7.092137 TGAAATAGAAGATTGCAGGAACATG 57.908 36.000 0.00 0.00 0.00 3.21
6029 6258 3.636764 GGGTCACTGTTCACAAAGGAAAT 59.363 43.478 0.00 0.00 0.00 2.17
6166 6395 8.981647 AGAGCAAATACATAAAACTTGCAAAAG 58.018 29.630 0.00 0.00 43.77 2.27
6197 6426 7.378181 CAAGCTTCAACCATAACTAAAACCAT 58.622 34.615 0.00 0.00 0.00 3.55
6312 6627 7.598869 TGATGCAGTGTTGTTCTAACTAGTAAG 59.401 37.037 0.00 0.00 0.00 2.34
6316 6631 5.163913 GCTGATGCAGTGTTGTTCTAACTAG 60.164 44.000 0.00 0.00 39.41 2.57
6318 6633 3.499918 GCTGATGCAGTGTTGTTCTAACT 59.500 43.478 0.00 0.00 39.41 2.24
6319 6634 3.250762 TGCTGATGCAGTGTTGTTCTAAC 59.749 43.478 0.00 0.00 45.31 2.34
6320 6635 3.475575 TGCTGATGCAGTGTTGTTCTAA 58.524 40.909 0.00 0.00 45.31 2.10
6321 6636 3.124578 TGCTGATGCAGTGTTGTTCTA 57.875 42.857 0.00 0.00 45.31 2.10
6617 6932 2.487265 GGGAACAGGCATCAATATCGGT 60.487 50.000 0.00 0.00 0.00 4.69
6667 6982 9.277783 CAAAGTTCCTATTGAGGGTATATTGAG 57.722 37.037 0.00 0.00 43.94 3.02
6994 7346 4.574828 ACATGGTATTCGATTGCTGGTAAC 59.425 41.667 0.00 0.00 0.00 2.50
6995 7347 4.776349 ACATGGTATTCGATTGCTGGTAA 58.224 39.130 0.00 0.00 0.00 2.85
6996 7348 4.377021 GACATGGTATTCGATTGCTGGTA 58.623 43.478 0.00 0.00 0.00 3.25
6997 7349 3.206150 GACATGGTATTCGATTGCTGGT 58.794 45.455 0.00 0.00 0.00 4.00
6998 7350 2.221749 CGACATGGTATTCGATTGCTGG 59.778 50.000 0.00 0.00 37.43 4.85
6999 7351 2.348872 GCGACATGGTATTCGATTGCTG 60.349 50.000 7.55 0.00 37.43 4.41
7000 7352 1.867233 GCGACATGGTATTCGATTGCT 59.133 47.619 7.55 0.00 37.43 3.91
7001 7353 1.867233 AGCGACATGGTATTCGATTGC 59.133 47.619 7.55 0.00 37.43 3.56
7002 7354 6.093404 AGTATAGCGACATGGTATTCGATTG 58.907 40.000 7.55 0.00 41.39 2.67
7003 7355 6.268825 AGTATAGCGACATGGTATTCGATT 57.731 37.500 7.55 0.00 41.39 3.34
7004 7356 5.899120 AGTATAGCGACATGGTATTCGAT 57.101 39.130 7.55 3.76 41.39 3.59
7005 7357 5.239963 TGAAGTATAGCGACATGGTATTCGA 59.760 40.000 7.55 0.00 41.39 3.71
7006 7358 5.458015 TGAAGTATAGCGACATGGTATTCG 58.542 41.667 0.00 0.00 41.39 3.34
7007 7359 7.385205 ACATTGAAGTATAGCGACATGGTATTC 59.615 37.037 0.00 0.00 41.39 1.75
7008 7360 7.217200 ACATTGAAGTATAGCGACATGGTATT 58.783 34.615 0.00 0.00 41.39 1.89
7009 7361 6.759272 ACATTGAAGTATAGCGACATGGTAT 58.241 36.000 0.00 0.00 43.46 2.73
7010 7362 6.156748 ACATTGAAGTATAGCGACATGGTA 57.843 37.500 0.00 0.00 34.52 3.25
7011 7363 5.023533 ACATTGAAGTATAGCGACATGGT 57.976 39.130 0.00 0.00 0.00 3.55
7012 7364 7.477144 TTTACATTGAAGTATAGCGACATGG 57.523 36.000 0.00 0.00 0.00 3.66
7013 7365 7.065894 GCTTTACATTGAAGTATAGCGACATG 58.934 38.462 0.00 0.00 38.57 3.21
7014 7366 6.761242 TGCTTTACATTGAAGTATAGCGACAT 59.239 34.615 10.42 0.00 45.82 3.06
7015 7367 6.103330 TGCTTTACATTGAAGTATAGCGACA 58.897 36.000 10.42 0.00 45.82 4.35
7016 7368 6.583912 TGCTTTACATTGAAGTATAGCGAC 57.416 37.500 10.42 0.00 45.82 5.19
7017 7369 6.816640 AGTTGCTTTACATTGAAGTATAGCGA 59.183 34.615 10.42 7.06 45.82 4.93
7018 7370 7.005062 AGTTGCTTTACATTGAAGTATAGCG 57.995 36.000 10.42 0.00 45.82 4.26
7024 7376 9.816354 AAAACATAAGTTGCTTTACATTGAAGT 57.184 25.926 0.00 0.00 38.17 3.01
7089 7970 5.968676 TTAAGCCCCACAAGTATAGTGAT 57.031 39.130 0.00 0.00 39.30 3.06
7147 8029 8.996024 ACAATAACATAAAACAATACTTGCCC 57.004 30.769 0.00 0.00 0.00 5.36
7200 8082 8.200792 GGATTAAGATATAGTGGAGTAGCATGG 58.799 40.741 0.00 0.00 0.00 3.66
7215 8097 5.163195 ACCGGACAGCAAAGGATTAAGATAT 60.163 40.000 9.46 0.00 0.00 1.63
7236 8118 1.202382 GGACCCGAGATGAGTTAACCG 60.202 57.143 0.88 0.00 0.00 4.44
7237 8119 2.108970 AGGACCCGAGATGAGTTAACC 58.891 52.381 0.88 0.00 0.00 2.85
7292 8174 4.340097 TCAAGAACAGTAACTTCCTCGTCA 59.660 41.667 0.00 0.00 0.00 4.35
7353 8237 0.609662 GTGTTGGGCATTGGCAAGAT 59.390 50.000 12.70 0.00 43.71 2.40
7483 8367 5.048713 GCTAAAACTCACAACATTACAGGCT 60.049 40.000 0.00 0.00 0.00 4.58
7801 8689 7.174253 AGCTTTACAATGTTCTCCACGAATTTA 59.826 33.333 0.00 0.00 33.45 1.40
7803 8691 5.473504 AGCTTTACAATGTTCTCCACGAATT 59.526 36.000 0.00 0.00 33.45 2.17
7804 8692 5.003804 AGCTTTACAATGTTCTCCACGAAT 58.996 37.500 0.00 0.00 33.45 3.34
7805 8693 4.213270 CAGCTTTACAATGTTCTCCACGAA 59.787 41.667 0.00 0.00 0.00 3.85
7806 8694 3.745975 CAGCTTTACAATGTTCTCCACGA 59.254 43.478 0.00 0.00 0.00 4.35
7807 8695 3.498397 ACAGCTTTACAATGTTCTCCACG 59.502 43.478 0.00 0.00 0.00 4.94
7808 8696 5.438761 AACAGCTTTACAATGTTCTCCAC 57.561 39.130 0.00 0.00 31.72 4.02
7809 8697 5.689383 GAACAGCTTTACAATGTTCTCCA 57.311 39.130 9.43 0.00 45.91 3.86
7814 8702 4.984161 GCATGTGAACAGCTTTACAATGTT 59.016 37.500 0.00 0.00 39.76 2.71
7815 8703 4.037803 TGCATGTGAACAGCTTTACAATGT 59.962 37.500 0.00 0.00 30.28 2.71
7816 8704 4.548494 TGCATGTGAACAGCTTTACAATG 58.452 39.130 0.00 0.00 30.28 2.82
7817 8705 4.852134 TGCATGTGAACAGCTTTACAAT 57.148 36.364 0.00 0.00 30.28 2.71
7818 8706 4.852134 ATGCATGTGAACAGCTTTACAA 57.148 36.364 0.00 0.00 30.28 2.41
7819 8707 6.513806 AATATGCATGTGAACAGCTTTACA 57.486 33.333 10.16 0.00 30.98 2.41
7820 8708 5.678483 CGAATATGCATGTGAACAGCTTTAC 59.322 40.000 10.16 0.00 0.00 2.01
7821 8709 5.730289 GCGAATATGCATGTGAACAGCTTTA 60.730 40.000 10.16 0.00 34.15 1.85
7822 8710 4.665212 CGAATATGCATGTGAACAGCTTT 58.335 39.130 10.16 0.00 0.00 3.51
7823 8711 3.488047 GCGAATATGCATGTGAACAGCTT 60.488 43.478 10.16 0.00 34.15 3.74
7824 8712 2.032550 GCGAATATGCATGTGAACAGCT 59.967 45.455 10.16 0.00 34.15 4.24
7825 8713 2.032550 AGCGAATATGCATGTGAACAGC 59.967 45.455 10.16 5.87 37.31 4.40
7826 8714 3.957671 AGCGAATATGCATGTGAACAG 57.042 42.857 10.16 0.00 37.31 3.16
7827 8715 3.809279 CCTAGCGAATATGCATGTGAACA 59.191 43.478 10.16 0.00 37.31 3.18
7828 8716 3.809832 ACCTAGCGAATATGCATGTGAAC 59.190 43.478 10.16 0.00 37.31 3.18
7829 8717 4.071961 ACCTAGCGAATATGCATGTGAA 57.928 40.909 10.16 0.00 37.31 3.18
7830 8718 3.751479 ACCTAGCGAATATGCATGTGA 57.249 42.857 10.16 0.00 37.31 3.58
7831 8719 3.561310 ACAACCTAGCGAATATGCATGTG 59.439 43.478 10.16 0.00 37.31 3.21
7832 8720 3.561310 CACAACCTAGCGAATATGCATGT 59.439 43.478 10.16 0.00 37.31 3.21
7833 8721 3.561310 ACACAACCTAGCGAATATGCATG 59.439 43.478 10.16 0.00 37.31 4.06
7834 8722 3.808728 ACACAACCTAGCGAATATGCAT 58.191 40.909 3.79 3.79 37.31 3.96
7835 8723 3.260475 ACACAACCTAGCGAATATGCA 57.740 42.857 0.00 0.00 37.31 3.96
7836 8724 3.242739 CCAACACAACCTAGCGAATATGC 60.243 47.826 0.00 0.00 0.00 3.14
7837 8725 3.938963 ACCAACACAACCTAGCGAATATG 59.061 43.478 0.00 0.00 0.00 1.78
7838 8726 4.216411 ACCAACACAACCTAGCGAATAT 57.784 40.909 0.00 0.00 0.00 1.28
7839 8727 3.688694 ACCAACACAACCTAGCGAATA 57.311 42.857 0.00 0.00 0.00 1.75
7840 8728 2.561478 ACCAACACAACCTAGCGAAT 57.439 45.000 0.00 0.00 0.00 3.34
7841 8729 2.758009 GTACCAACACAACCTAGCGAA 58.242 47.619 0.00 0.00 0.00 4.70
7842 8730 1.336148 CGTACCAACACAACCTAGCGA 60.336 52.381 0.00 0.00 0.00 4.93
7843 8731 1.065358 CGTACCAACACAACCTAGCG 58.935 55.000 0.00 0.00 0.00 4.26
7844 8732 2.064014 GTCGTACCAACACAACCTAGC 58.936 52.381 0.00 0.00 0.00 3.42
7845 8733 3.005050 TCAGTCGTACCAACACAACCTAG 59.995 47.826 0.00 0.00 0.00 3.02
7846 8734 2.957680 TCAGTCGTACCAACACAACCTA 59.042 45.455 0.00 0.00 0.00 3.08
7847 8735 1.758280 TCAGTCGTACCAACACAACCT 59.242 47.619 0.00 0.00 0.00 3.50
7848 8736 1.862827 GTCAGTCGTACCAACACAACC 59.137 52.381 0.00 0.00 0.00 3.77
7902 8790 5.242393 TGCTTCCCTTCATCAAAAGAAGAAG 59.758 40.000 4.61 4.08 44.00 2.85
7903 8791 5.139727 TGCTTCCCTTCATCAAAAGAAGAA 58.860 37.500 4.61 0.00 44.00 2.52
7904 8792 4.728772 TGCTTCCCTTCATCAAAAGAAGA 58.271 39.130 4.61 0.00 44.00 2.87
7905 8793 4.617762 GCTGCTTCCCTTCATCAAAAGAAG 60.618 45.833 0.00 0.00 41.61 2.85
8029 8917 1.043673 TTTGAAACAACACCCCCGGG 61.044 55.000 15.80 15.80 42.03 5.73
8036 8924 5.559427 ATTTGGGCTTTTTGAAACAACAC 57.441 34.783 0.00 0.00 0.00 3.32
8037 8925 4.331168 CGATTTGGGCTTTTTGAAACAACA 59.669 37.500 0.00 0.00 0.00 3.33
8075 8964 8.238631 GCCATATCTGTTAGAAAACGGTTTAAA 58.761 33.333 6.53 0.00 41.86 1.52
8090 8979 2.241941 TCACATGTGGGCCATATCTGTT 59.758 45.455 25.16 0.00 30.71 3.16
8118 9007 2.584791 GCGTTGACTTTTATGCCACAG 58.415 47.619 0.00 0.00 0.00 3.66
8126 9015 4.118410 TCAGTTAACCGCGTTGACTTTTA 58.882 39.130 4.92 0.00 39.70 1.52
8139 9028 6.510638 CGGTCAACTTAACTGTTCAGTTAACC 60.511 42.308 22.03 22.03 38.76 2.85
8216 9105 9.143631 CAGTCAGGGATAAAAATTGATTGTTTC 57.856 33.333 0.00 0.00 0.00 2.78
8225 9114 3.769300 GGCACCAGTCAGGGATAAAAATT 59.231 43.478 0.00 0.00 43.89 1.82
8241 9130 2.927856 AGGTGGATGACGGCACCA 60.928 61.111 8.31 8.31 40.00 4.17
8265 9156 3.129502 GCTGCTTGCTCATCCGCA 61.130 61.111 0.00 0.00 38.95 5.69
8271 9162 2.359602 GCTCCTGCTGCTTGCTCA 60.360 61.111 0.00 0.00 43.37 4.26
8361 9252 2.108976 GCGGATGGAATGAGGCGA 59.891 61.111 0.00 0.00 0.00 5.54
8365 9256 1.526917 GGGTGGCGGATGGAATGAG 60.527 63.158 0.00 0.00 0.00 2.90
8366 9257 2.595095 GGGTGGCGGATGGAATGA 59.405 61.111 0.00 0.00 0.00 2.57
8396 9287 0.250727 CTTTGAGGCCGGTGAAGGAA 60.251 55.000 1.90 0.00 0.00 3.36
8397 9288 1.125093 TCTTTGAGGCCGGTGAAGGA 61.125 55.000 1.90 0.00 0.00 3.36
8398 9289 0.035056 ATCTTTGAGGCCGGTGAAGG 60.035 55.000 1.90 0.00 0.00 3.46
8403 9294 2.125106 GCGATCTTTGAGGCCGGT 60.125 61.111 1.90 0.00 0.00 5.28
8427 9318 1.750399 GACGGCACATCAATGGCCT 60.750 57.895 3.32 7.20 42.01 5.19
8549 9440 0.687354 GTTCACTCTTGCAGGAGGGA 59.313 55.000 25.59 25.59 43.14 4.20
8551 9442 1.294659 GCGTTCACTCTTGCAGGAGG 61.295 60.000 27.37 16.98 37.63 4.30
8564 9455 3.947841 GGCTTGTGCGTGCGTTCA 61.948 61.111 0.00 0.00 40.82 3.18
8675 9567 2.291043 AAGGCTCGATTCCGGTGGT 61.291 57.895 0.00 0.00 36.24 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.