Multiple sequence alignment - TraesCS7B01G323300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G323300 chr7B 100.000 3115 0 0 1 3115 574468213 574471327 0.000000e+00 5753.0
1 TraesCS7B01G323300 chr7B 79.655 290 44 11 2409 2687 575368136 575368421 8.810000e-46 195.0
2 TraesCS7B01G323300 chr7B 88.119 101 12 0 552 652 141564027 141564127 1.520000e-23 121.0
3 TraesCS7B01G323300 chr7D 92.558 2607 141 21 544 3115 533903896 533906484 0.000000e+00 3690.0
4 TraesCS7B01G323300 chr7D 90.957 376 31 3 1 374 472297401 472297775 1.290000e-138 503.0
5 TraesCS7B01G323300 chr7D 79.032 124 24 2 415 537 53536279 53536157 1.990000e-12 84.2
6 TraesCS7B01G323300 chr7A 92.772 2421 136 14 718 3115 613631502 613633906 0.000000e+00 3465.0
7 TraesCS7B01G323300 chr5A 91.755 376 28 3 1 374 167058974 167058600 1.280000e-143 520.0
8 TraesCS7B01G323300 chr5D 91.444 374 30 2 1 373 116167029 116167401 2.140000e-141 512.0
9 TraesCS7B01G323300 chr2D 91.444 374 30 2 1 373 204556948 204556576 2.140000e-141 512.0
10 TraesCS7B01G323300 chr2D 91.328 369 30 2 7 374 204594196 204593829 1.290000e-138 503.0
11 TraesCS7B01G323300 chr2D 90.741 378 30 5 1 375 125523540 125523165 1.670000e-137 499.0
12 TraesCS7B01G323300 chr2D 92.308 39 3 0 499 537 113379660 113379698 4.340000e-04 56.5
13 TraesCS7B01G323300 chr3D 91.247 377 28 5 1 374 496494443 496494817 2.770000e-140 508.0
14 TraesCS7B01G323300 chr3D 88.095 126 13 2 552 676 580131706 580131582 6.960000e-32 148.0
15 TraesCS7B01G323300 chr1A 90.765 379 32 3 1 377 450336947 450336570 1.290000e-138 503.0
16 TraesCS7B01G323300 chr1A 86.364 110 15 0 552 661 533665257 533665366 1.520000e-23 121.0
17 TraesCS7B01G323300 chr2B 90.909 374 31 3 1 373 251385815 251386186 1.670000e-137 499.0
18 TraesCS7B01G323300 chr2B 86.364 110 15 0 417 526 229182035 229181926 1.520000e-23 121.0
19 TraesCS7B01G323300 chr2B 94.595 37 2 0 492 528 184652459 184652495 1.210000e-04 58.4
20 TraesCS7B01G323300 chr1B 85.600 125 18 0 552 676 591350476 591350600 7.010000e-27 132.0
21 TraesCS7B01G323300 chr6D 80.263 152 28 2 386 536 336517944 336518094 2.540000e-21 113.0
22 TraesCS7B01G323300 chr6D 89.091 55 6 0 552 606 43406016 43406070 5.570000e-08 69.4
23 TraesCS7B01G323300 chr4A 80.282 142 28 0 385 526 596727174 596727315 1.180000e-19 108.0
24 TraesCS7B01G323300 chr4A 87.755 49 5 1 2788 2835 681792788 681792836 4.340000e-04 56.5
25 TraesCS7B01G323300 chr2A 85.366 82 11 1 2872 2952 563942751 563942832 1.990000e-12 84.2
26 TraesCS7B01G323300 chr4D 84.932 73 11 0 464 536 490146835 490146907 1.200000e-09 75.0
27 TraesCS7B01G323300 chr4D 80.198 101 18 2 438 537 497027831 497027930 1.200000e-09 75.0
28 TraesCS7B01G323300 chr6B 100.000 32 0 0 2787 2818 579212908 579212939 3.350000e-05 60.2
29 TraesCS7B01G323300 chrUn 100.000 30 0 0 2788 2817 202163553 202163524 4.340000e-04 56.5
30 TraesCS7B01G323300 chrUn 100.000 30 0 0 2788 2817 202180654 202180625 4.340000e-04 56.5
31 TraesCS7B01G323300 chrUn 100.000 30 0 0 2788 2817 202184737 202184708 4.340000e-04 56.5
32 TraesCS7B01G323300 chrUn 92.500 40 1 2 2779 2817 210163095 210163133 4.340000e-04 56.5
33 TraesCS7B01G323300 chrUn 92.500 40 1 2 2779 2817 210630980 210631018 4.340000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G323300 chr7B 574468213 574471327 3114 False 5753 5753 100.000 1 3115 1 chr7B.!!$F2 3114
1 TraesCS7B01G323300 chr7D 533903896 533906484 2588 False 3690 3690 92.558 544 3115 1 chr7D.!!$F2 2571
2 TraesCS7B01G323300 chr7A 613631502 613633906 2404 False 3465 3465 92.772 718 3115 1 chr7A.!!$F1 2397

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
549 550 0.03831 GGCCCTCTAGTGCAACCTTT 59.962 55.0 0.0 0.0 37.80 3.11 F
1495 1527 0.09820 TAGTCTCGGACGATGTTGCG 59.902 55.0 0.0 0.0 37.67 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1844 1876 0.110823 GCAACACGTCGATCCAACAC 60.111 55.0 0.0 0.0 0.00 3.32 R
2347 2399 1.234615 ATTTGGCGACTCCCAACACG 61.235 55.0 0.0 0.0 44.17 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.105039 CTCCAGTATCCGGGAGTTGC 59.895 60.000 0.00 0.00 45.07 4.17
21 22 0.616395 TCCAGTATCCGGGAGTTGCA 60.616 55.000 0.00 0.00 30.82 4.08
22 23 0.469917 CCAGTATCCGGGAGTTGCAT 59.530 55.000 0.00 0.00 0.00 3.96
23 24 1.586422 CAGTATCCGGGAGTTGCATG 58.414 55.000 0.00 0.00 0.00 4.06
24 25 1.138859 CAGTATCCGGGAGTTGCATGA 59.861 52.381 0.00 0.00 0.00 3.07
25 26 2.050144 AGTATCCGGGAGTTGCATGAT 58.950 47.619 0.00 0.00 0.00 2.45
26 27 2.037772 AGTATCCGGGAGTTGCATGATC 59.962 50.000 0.00 0.00 0.00 2.92
27 28 1.135094 ATCCGGGAGTTGCATGATCT 58.865 50.000 0.00 0.00 0.00 2.75
28 29 0.465705 TCCGGGAGTTGCATGATCTC 59.534 55.000 0.00 0.12 0.00 2.75
29 30 0.178767 CCGGGAGTTGCATGATCTCA 59.821 55.000 0.00 0.00 0.00 3.27
30 31 1.202734 CCGGGAGTTGCATGATCTCAT 60.203 52.381 0.00 0.00 36.96 2.90
42 43 4.970860 ATGATCTCATGGTCGAAGGAAT 57.029 40.909 0.00 0.00 34.83 3.01
44 45 6.617782 ATGATCTCATGGTCGAAGGAATAT 57.382 37.500 0.00 0.00 34.83 1.28
45 46 5.787380 TGATCTCATGGTCGAAGGAATATG 58.213 41.667 0.00 0.00 0.00 1.78
46 47 5.305386 TGATCTCATGGTCGAAGGAATATGT 59.695 40.000 0.00 0.00 0.00 2.29
47 48 6.493458 TGATCTCATGGTCGAAGGAATATGTA 59.507 38.462 0.00 0.00 0.00 2.29
48 49 6.918067 TCTCATGGTCGAAGGAATATGTAT 57.082 37.500 0.00 0.00 0.00 2.29
49 50 7.303182 TCTCATGGTCGAAGGAATATGTATT 57.697 36.000 0.00 0.00 0.00 1.89
50 51 7.735917 TCTCATGGTCGAAGGAATATGTATTT 58.264 34.615 0.00 0.00 0.00 1.40
51 52 7.657354 TCTCATGGTCGAAGGAATATGTATTTG 59.343 37.037 0.00 0.00 0.00 2.32
52 53 7.505258 TCATGGTCGAAGGAATATGTATTTGA 58.495 34.615 0.00 0.00 0.00 2.69
53 54 7.441157 TCATGGTCGAAGGAATATGTATTTGAC 59.559 37.037 0.00 0.00 35.98 3.18
54 55 6.645306 TGGTCGAAGGAATATGTATTTGACA 58.355 36.000 12.80 0.00 43.97 3.58
70 71 9.787532 TGTATTTGACATTAAGAAAGCAATAGC 57.212 29.630 0.00 0.00 35.11 2.97
71 72 9.787532 GTATTTGACATTAAGAAAGCAATAGCA 57.212 29.630 0.00 0.00 45.49 3.49
73 74 9.709495 ATTTGACATTAAGAAAGCAATAGCAAA 57.291 25.926 0.00 0.00 45.49 3.68
74 75 9.539825 TTTGACATTAAGAAAGCAATAGCAAAA 57.460 25.926 0.00 0.00 45.49 2.44
75 76 9.539825 TTGACATTAAGAAAGCAATAGCAAAAA 57.460 25.926 0.00 0.00 45.49 1.94
76 77 8.977505 TGACATTAAGAAAGCAATAGCAAAAAC 58.022 29.630 0.00 0.00 45.49 2.43
77 78 9.196552 GACATTAAGAAAGCAATAGCAAAAACT 57.803 29.630 0.00 0.00 45.49 2.66
81 82 9.893305 TTAAGAAAGCAATAGCAAAAACTAGAC 57.107 29.630 0.00 0.00 45.49 2.59
82 83 6.603095 AGAAAGCAATAGCAAAAACTAGACG 58.397 36.000 0.00 0.00 45.49 4.18
83 84 6.426937 AGAAAGCAATAGCAAAAACTAGACGA 59.573 34.615 0.00 0.00 45.49 4.20
84 85 6.743575 AAGCAATAGCAAAAACTAGACGAT 57.256 33.333 0.00 0.00 45.49 3.73
85 86 6.351327 AGCAATAGCAAAAACTAGACGATC 57.649 37.500 0.00 0.00 45.49 3.69
86 87 5.874810 AGCAATAGCAAAAACTAGACGATCA 59.125 36.000 0.00 0.00 45.49 2.92
87 88 6.540189 AGCAATAGCAAAAACTAGACGATCAT 59.460 34.615 0.00 0.00 45.49 2.45
88 89 7.710907 AGCAATAGCAAAAACTAGACGATCATA 59.289 33.333 0.00 0.00 45.49 2.15
89 90 8.499162 GCAATAGCAAAAACTAGACGATCATAT 58.501 33.333 0.00 0.00 41.58 1.78
90 91 9.803130 CAATAGCAAAAACTAGACGATCATATG 57.197 33.333 0.00 0.00 0.00 1.78
91 92 6.292389 AGCAAAAACTAGACGATCATATGC 57.708 37.500 0.00 0.00 0.00 3.14
92 93 6.051717 AGCAAAAACTAGACGATCATATGCT 58.948 36.000 0.00 0.00 34.68 3.79
93 94 7.210174 AGCAAAAACTAGACGATCATATGCTA 58.790 34.615 0.00 0.00 37.47 3.49
94 95 7.875041 AGCAAAAACTAGACGATCATATGCTAT 59.125 33.333 0.00 0.00 37.47 2.97
95 96 7.954248 GCAAAAACTAGACGATCATATGCTATG 59.046 37.037 0.00 0.00 0.00 2.23
96 97 7.588143 AAAACTAGACGATCATATGCTATGC 57.412 36.000 0.00 0.00 0.00 3.14
97 98 6.522625 AACTAGACGATCATATGCTATGCT 57.477 37.500 0.00 0.00 0.00 3.79
98 99 7.631717 AACTAGACGATCATATGCTATGCTA 57.368 36.000 0.00 0.00 0.00 3.49
99 100 7.631717 ACTAGACGATCATATGCTATGCTAA 57.368 36.000 0.00 0.00 0.00 3.09
100 101 7.476667 ACTAGACGATCATATGCTATGCTAAC 58.523 38.462 0.00 0.00 0.00 2.34
101 102 5.335935 AGACGATCATATGCTATGCTAACG 58.664 41.667 0.00 0.00 0.00 3.18
102 103 5.123979 AGACGATCATATGCTATGCTAACGA 59.876 40.000 0.00 0.00 0.00 3.85
103 104 5.709966 ACGATCATATGCTATGCTAACGAA 58.290 37.500 0.00 0.00 0.00 3.85
104 105 6.333416 ACGATCATATGCTATGCTAACGAAT 58.667 36.000 0.00 0.00 0.00 3.34
105 106 6.254373 ACGATCATATGCTATGCTAACGAATG 59.746 38.462 0.00 0.00 0.00 2.67
106 107 6.254373 CGATCATATGCTATGCTAACGAATGT 59.746 38.462 0.00 0.00 0.00 2.71
107 108 6.710692 TCATATGCTATGCTAACGAATGTG 57.289 37.500 0.00 0.00 0.00 3.21
108 109 6.223120 TCATATGCTATGCTAACGAATGTGT 58.777 36.000 0.00 0.00 0.00 3.72
109 110 6.366061 TCATATGCTATGCTAACGAATGTGTC 59.634 38.462 0.00 0.00 0.00 3.67
110 111 4.123497 TGCTATGCTAACGAATGTGTCT 57.877 40.909 0.00 0.00 0.00 3.41
111 112 4.503910 TGCTATGCTAACGAATGTGTCTT 58.496 39.130 0.00 0.00 0.00 3.01
112 113 4.329801 TGCTATGCTAACGAATGTGTCTTG 59.670 41.667 0.00 0.00 0.00 3.02
113 114 3.747099 ATGCTAACGAATGTGTCTTGC 57.253 42.857 0.00 0.00 0.00 4.01
114 115 1.804151 TGCTAACGAATGTGTCTTGCC 59.196 47.619 0.00 0.00 0.00 4.52
115 116 1.130561 GCTAACGAATGTGTCTTGCCC 59.869 52.381 0.00 0.00 0.00 5.36
116 117 2.422597 CTAACGAATGTGTCTTGCCCA 58.577 47.619 0.00 0.00 0.00 5.36
117 118 1.909700 AACGAATGTGTCTTGCCCAT 58.090 45.000 0.00 0.00 0.00 4.00
118 119 1.453155 ACGAATGTGTCTTGCCCATC 58.547 50.000 0.00 0.00 0.00 3.51
119 120 1.271325 ACGAATGTGTCTTGCCCATCA 60.271 47.619 0.00 0.00 0.00 3.07
120 121 2.019249 CGAATGTGTCTTGCCCATCAT 58.981 47.619 0.00 0.00 0.00 2.45
121 122 3.205338 CGAATGTGTCTTGCCCATCATA 58.795 45.455 0.00 0.00 0.00 2.15
122 123 3.817084 CGAATGTGTCTTGCCCATCATAT 59.183 43.478 0.00 0.00 0.00 1.78
123 124 4.083643 CGAATGTGTCTTGCCCATCATATC 60.084 45.833 0.00 0.00 0.00 1.63
124 125 3.929955 TGTGTCTTGCCCATCATATCA 57.070 42.857 0.00 0.00 0.00 2.15
125 126 4.442401 TGTGTCTTGCCCATCATATCAT 57.558 40.909 0.00 0.00 0.00 2.45
126 127 4.795469 TGTGTCTTGCCCATCATATCATT 58.205 39.130 0.00 0.00 0.00 2.57
127 128 4.823442 TGTGTCTTGCCCATCATATCATTC 59.177 41.667 0.00 0.00 0.00 2.67
128 129 5.068636 GTGTCTTGCCCATCATATCATTCT 58.931 41.667 0.00 0.00 0.00 2.40
129 130 5.180868 GTGTCTTGCCCATCATATCATTCTC 59.819 44.000 0.00 0.00 0.00 2.87
130 131 4.699257 GTCTTGCCCATCATATCATTCTCC 59.301 45.833 0.00 0.00 0.00 3.71
131 132 4.600547 TCTTGCCCATCATATCATTCTCCT 59.399 41.667 0.00 0.00 0.00 3.69
132 133 5.786975 TCTTGCCCATCATATCATTCTCCTA 59.213 40.000 0.00 0.00 0.00 2.94
133 134 6.273026 TCTTGCCCATCATATCATTCTCCTAA 59.727 38.462 0.00 0.00 0.00 2.69
134 135 6.647461 TGCCCATCATATCATTCTCCTAAT 57.353 37.500 0.00 0.00 0.00 1.73
135 136 6.420638 TGCCCATCATATCATTCTCCTAATG 58.579 40.000 0.00 0.00 0.00 1.90
136 137 6.216046 TGCCCATCATATCATTCTCCTAATGA 59.784 38.462 3.13 3.13 40.50 2.57
137 138 7.092128 TGCCCATCATATCATTCTCCTAATGAT 60.092 37.037 15.36 15.36 46.01 2.45
138 139 7.228906 GCCCATCATATCATTCTCCTAATGATG 59.771 40.741 18.79 13.55 44.49 3.07
139 140 8.272889 CCCATCATATCATTCTCCTAATGATGT 58.727 37.037 18.79 12.03 44.57 3.06
145 146 9.902684 ATATCATTCTCCTAATGATGTGATTCC 57.097 33.333 18.79 0.00 44.49 3.01
146 147 6.226052 TCATTCTCCTAATGATGTGATTCCG 58.774 40.000 0.00 0.00 32.21 4.30
147 148 3.995199 TCTCCTAATGATGTGATTCCGC 58.005 45.455 0.00 0.00 0.00 5.54
148 149 3.643320 TCTCCTAATGATGTGATTCCGCT 59.357 43.478 0.00 0.00 0.00 5.52
149 150 4.832823 TCTCCTAATGATGTGATTCCGCTA 59.167 41.667 0.00 0.00 0.00 4.26
150 151 5.481824 TCTCCTAATGATGTGATTCCGCTAT 59.518 40.000 0.00 0.00 0.00 2.97
151 152 6.014242 TCTCCTAATGATGTGATTCCGCTATT 60.014 38.462 0.00 0.00 0.00 1.73
152 153 7.178451 TCTCCTAATGATGTGATTCCGCTATTA 59.822 37.037 0.00 0.00 0.00 0.98
153 154 7.676004 TCCTAATGATGTGATTCCGCTATTAA 58.324 34.615 0.00 0.00 0.00 1.40
154 155 8.321353 TCCTAATGATGTGATTCCGCTATTAAT 58.679 33.333 0.00 0.00 0.00 1.40
155 156 8.393366 CCTAATGATGTGATTCCGCTATTAATG 58.607 37.037 0.00 0.00 0.00 1.90
156 157 7.984422 AATGATGTGATTCCGCTATTAATGA 57.016 32.000 0.00 0.00 0.00 2.57
157 158 6.785488 TGATGTGATTCCGCTATTAATGAC 57.215 37.500 0.00 0.00 0.00 3.06
158 159 6.287525 TGATGTGATTCCGCTATTAATGACA 58.712 36.000 0.00 0.00 34.48 3.58
159 160 6.765512 TGATGTGATTCCGCTATTAATGACAA 59.234 34.615 0.00 0.00 33.84 3.18
160 161 6.358118 TGTGATTCCGCTATTAATGACAAC 57.642 37.500 0.00 0.00 28.31 3.32
161 162 5.295787 TGTGATTCCGCTATTAATGACAACC 59.704 40.000 0.00 0.00 28.31 3.77
162 163 4.819630 TGATTCCGCTATTAATGACAACCC 59.180 41.667 0.00 0.00 0.00 4.11
163 164 3.916359 TCCGCTATTAATGACAACCCA 57.084 42.857 0.00 0.00 0.00 4.51
164 165 4.431416 TCCGCTATTAATGACAACCCAT 57.569 40.909 0.00 0.00 0.00 4.00
165 166 4.133820 TCCGCTATTAATGACAACCCATG 58.866 43.478 0.00 0.00 0.00 3.66
177 178 4.428294 ACAACCCATGTCTATGATGAGG 57.572 45.455 0.00 0.00 37.96 3.86
178 179 4.040047 ACAACCCATGTCTATGATGAGGA 58.960 43.478 0.00 0.00 37.96 3.71
179 180 4.474651 ACAACCCATGTCTATGATGAGGAA 59.525 41.667 0.00 0.00 37.96 3.36
180 181 5.044919 ACAACCCATGTCTATGATGAGGAAA 60.045 40.000 0.00 0.00 37.96 3.13
181 182 5.041191 ACCCATGTCTATGATGAGGAAAC 57.959 43.478 0.00 0.00 36.36 2.78
182 183 4.141390 ACCCATGTCTATGATGAGGAAACC 60.141 45.833 0.00 0.00 36.36 3.27
183 184 4.103785 CCCATGTCTATGATGAGGAAACCT 59.896 45.833 0.00 0.00 36.36 3.50
184 185 5.398353 CCCATGTCTATGATGAGGAAACCTT 60.398 44.000 0.00 0.00 36.36 3.50
185 186 6.183361 CCCATGTCTATGATGAGGAAACCTTA 60.183 42.308 0.00 0.00 36.36 2.69
186 187 7.282585 CCATGTCTATGATGAGGAAACCTTAA 58.717 38.462 0.00 0.00 36.36 1.85
187 188 7.227512 CCATGTCTATGATGAGGAAACCTTAAC 59.772 40.741 0.00 0.00 36.36 2.01
188 189 6.650120 TGTCTATGATGAGGAAACCTTAACC 58.350 40.000 0.00 0.00 31.76 2.85
189 190 6.214615 TGTCTATGATGAGGAAACCTTAACCA 59.785 38.462 0.00 0.00 31.76 3.67
190 191 7.092444 TGTCTATGATGAGGAAACCTTAACCAT 60.092 37.037 0.00 0.00 31.76 3.55
191 192 7.442666 GTCTATGATGAGGAAACCTTAACCATC 59.557 40.741 0.00 0.00 34.06 3.51
192 193 5.779241 TGATGAGGAAACCTTAACCATCT 57.221 39.130 14.03 0.00 34.36 2.90
193 194 6.139679 TGATGAGGAAACCTTAACCATCTT 57.860 37.500 14.03 0.00 34.36 2.40
194 195 6.552008 TGATGAGGAAACCTTAACCATCTTT 58.448 36.000 14.03 0.00 34.36 2.52
195 196 7.010160 TGATGAGGAAACCTTAACCATCTTTT 58.990 34.615 14.03 0.00 34.36 2.27
196 197 8.167392 TGATGAGGAAACCTTAACCATCTTTTA 58.833 33.333 14.03 0.00 34.36 1.52
197 198 8.950007 ATGAGGAAACCTTAACCATCTTTTAA 57.050 30.769 0.00 0.00 31.76 1.52
198 199 8.950007 TGAGGAAACCTTAACCATCTTTTAAT 57.050 30.769 0.00 0.00 31.76 1.40
199 200 9.020731 TGAGGAAACCTTAACCATCTTTTAATC 57.979 33.333 0.00 0.00 31.76 1.75
200 201 8.950007 AGGAAACCTTAACCATCTTTTAATCA 57.050 30.769 0.00 0.00 0.00 2.57
201 202 9.374711 AGGAAACCTTAACCATCTTTTAATCAA 57.625 29.630 0.00 0.00 0.00 2.57
202 203 9.419297 GGAAACCTTAACCATCTTTTAATCAAC 57.581 33.333 0.00 0.00 0.00 3.18
203 204 9.124807 GAAACCTTAACCATCTTTTAATCAACG 57.875 33.333 0.00 0.00 0.00 4.10
204 205 7.989416 ACCTTAACCATCTTTTAATCAACGA 57.011 32.000 0.00 0.00 0.00 3.85
205 206 8.040716 ACCTTAACCATCTTTTAATCAACGAG 57.959 34.615 0.00 0.00 0.00 4.18
206 207 6.967199 CCTTAACCATCTTTTAATCAACGAGC 59.033 38.462 0.00 0.00 0.00 5.03
207 208 7.148239 CCTTAACCATCTTTTAATCAACGAGCT 60.148 37.037 0.00 0.00 0.00 4.09
208 209 8.780846 TTAACCATCTTTTAATCAACGAGCTA 57.219 30.769 0.00 0.00 0.00 3.32
209 210 7.681939 AACCATCTTTTAATCAACGAGCTAA 57.318 32.000 0.00 0.00 0.00 3.09
210 211 7.865706 ACCATCTTTTAATCAACGAGCTAAT 57.134 32.000 0.00 0.00 0.00 1.73
211 212 7.920738 ACCATCTTTTAATCAACGAGCTAATC 58.079 34.615 0.00 0.00 0.00 1.75
212 213 7.770897 ACCATCTTTTAATCAACGAGCTAATCT 59.229 33.333 0.00 0.00 0.00 2.40
213 214 9.261180 CCATCTTTTAATCAACGAGCTAATCTA 57.739 33.333 0.00 0.00 0.00 1.98
220 221 6.811253 ATCAACGAGCTAATCTAGTAGAGG 57.189 41.667 5.98 0.29 30.15 3.69
221 222 4.515944 TCAACGAGCTAATCTAGTAGAGGC 59.484 45.833 5.98 9.64 30.15 4.70
222 223 4.360951 ACGAGCTAATCTAGTAGAGGCT 57.639 45.455 18.69 18.69 33.52 4.58
223 224 4.721132 ACGAGCTAATCTAGTAGAGGCTT 58.279 43.478 19.27 7.75 31.94 4.35
224 225 5.867330 ACGAGCTAATCTAGTAGAGGCTTA 58.133 41.667 19.27 8.34 31.94 3.09
225 226 5.702209 ACGAGCTAATCTAGTAGAGGCTTAC 59.298 44.000 19.27 11.07 31.94 2.34
226 227 5.935789 CGAGCTAATCTAGTAGAGGCTTACT 59.064 44.000 19.27 12.02 37.61 2.24
227 228 6.128391 CGAGCTAATCTAGTAGAGGCTTACTG 60.128 46.154 19.27 10.69 35.57 2.74
228 229 6.007703 AGCTAATCTAGTAGAGGCTTACTGG 58.992 44.000 15.09 13.25 35.57 4.00
229 230 5.184287 GCTAATCTAGTAGAGGCTTACTGGG 59.816 48.000 5.98 10.15 35.57 4.45
230 231 3.596940 TCTAGTAGAGGCTTACTGGGG 57.403 52.381 15.24 8.52 35.57 4.96
231 232 3.128848 TCTAGTAGAGGCTTACTGGGGA 58.871 50.000 15.24 9.96 35.57 4.81
232 233 2.162264 AGTAGAGGCTTACTGGGGAC 57.838 55.000 8.07 0.00 32.78 4.46
233 234 1.646977 AGTAGAGGCTTACTGGGGACT 59.353 52.381 8.07 0.00 32.78 3.85
234 235 2.044630 AGTAGAGGCTTACTGGGGACTT 59.955 50.000 8.07 0.00 32.78 3.01
235 236 2.942604 AGAGGCTTACTGGGGACTTA 57.057 50.000 0.00 0.00 0.00 2.24
236 237 2.753247 AGAGGCTTACTGGGGACTTAG 58.247 52.381 0.00 0.00 0.00 2.18
237 238 2.044630 AGAGGCTTACTGGGGACTTAGT 59.955 50.000 0.00 0.00 0.00 2.24
238 239 3.271490 AGAGGCTTACTGGGGACTTAGTA 59.729 47.826 0.00 0.00 0.00 1.82
239 240 4.078513 AGAGGCTTACTGGGGACTTAGTAT 60.079 45.833 0.00 0.00 30.93 2.12
240 241 4.632292 AGGCTTACTGGGGACTTAGTATT 58.368 43.478 0.00 0.00 30.93 1.89
241 242 5.037598 AGGCTTACTGGGGACTTAGTATTT 58.962 41.667 0.00 0.00 30.93 1.40
242 243 5.104485 AGGCTTACTGGGGACTTAGTATTTG 60.104 44.000 0.00 0.00 30.93 2.32
243 244 4.575236 GCTTACTGGGGACTTAGTATTTGC 59.425 45.833 0.00 0.00 30.93 3.68
244 245 5.629366 GCTTACTGGGGACTTAGTATTTGCT 60.629 44.000 0.00 0.00 30.93 3.91
245 246 4.929146 ACTGGGGACTTAGTATTTGCTT 57.071 40.909 0.00 0.00 0.00 3.91
246 247 7.499200 TTACTGGGGACTTAGTATTTGCTTA 57.501 36.000 0.00 0.00 30.93 3.09
247 248 6.576778 ACTGGGGACTTAGTATTTGCTTAT 57.423 37.500 0.00 0.00 0.00 1.73
248 249 6.357367 ACTGGGGACTTAGTATTTGCTTATG 58.643 40.000 0.00 0.00 0.00 1.90
249 250 6.069615 ACTGGGGACTTAGTATTTGCTTATGT 60.070 38.462 0.00 0.00 0.00 2.29
250 251 7.126726 ACTGGGGACTTAGTATTTGCTTATGTA 59.873 37.037 0.00 0.00 0.00 2.29
251 252 8.041143 TGGGGACTTAGTATTTGCTTATGTAT 57.959 34.615 0.00 0.00 0.00 2.29
252 253 8.499406 TGGGGACTTAGTATTTGCTTATGTATT 58.501 33.333 0.00 0.00 0.00 1.89
253 254 9.000486 GGGGACTTAGTATTTGCTTATGTATTC 58.000 37.037 0.00 0.00 0.00 1.75
254 255 9.555727 GGGACTTAGTATTTGCTTATGTATTCA 57.444 33.333 0.00 0.00 0.00 2.57
261 262 9.177608 AGTATTTGCTTATGTATTCACACATGT 57.822 29.630 0.00 0.00 39.46 3.21
360 361 7.075851 ACCACTTTATTATTACCTCTAGGGC 57.924 40.000 0.20 0.00 40.27 5.19
361 362 6.618196 ACCACTTTATTATTACCTCTAGGGCA 59.382 38.462 0.20 0.00 40.27 5.36
362 363 7.294958 ACCACTTTATTATTACCTCTAGGGCAT 59.705 37.037 0.20 0.00 40.27 4.40
363 364 8.822805 CCACTTTATTATTACCTCTAGGGCATA 58.177 37.037 0.20 0.00 40.27 3.14
369 370 7.881912 TTATTACCTCTAGGGCATATTTCCA 57.118 36.000 0.20 0.00 40.27 3.53
370 371 6.780198 ATTACCTCTAGGGCATATTTCCAA 57.220 37.500 0.20 0.00 40.27 3.53
371 372 4.439253 ACCTCTAGGGCATATTTCCAAC 57.561 45.455 0.20 0.00 40.27 3.77
372 373 3.785887 ACCTCTAGGGCATATTTCCAACA 59.214 43.478 0.20 0.00 40.27 3.33
373 374 4.141390 ACCTCTAGGGCATATTTCCAACAG 60.141 45.833 0.20 0.00 40.27 3.16
374 375 4.392940 CTCTAGGGCATATTTCCAACAGG 58.607 47.826 0.00 0.00 0.00 4.00
375 376 2.459555 AGGGCATATTTCCAACAGGG 57.540 50.000 0.00 0.00 38.37 4.45
376 377 1.062962 AGGGCATATTTCCAACAGGGG 60.063 52.381 0.00 0.00 37.22 4.79
377 378 1.342975 GGGCATATTTCCAACAGGGGT 60.343 52.381 0.00 0.00 37.22 4.95
378 379 2.031870 GGCATATTTCCAACAGGGGTC 58.968 52.381 0.00 0.00 37.22 4.46
379 380 1.676006 GCATATTTCCAACAGGGGTCG 59.324 52.381 0.00 0.00 37.22 4.79
380 381 1.676006 CATATTTCCAACAGGGGTCGC 59.324 52.381 0.00 0.00 37.22 5.19
381 382 0.988832 TATTTCCAACAGGGGTCGCT 59.011 50.000 0.00 0.00 37.22 4.93
382 383 0.322546 ATTTCCAACAGGGGTCGCTC 60.323 55.000 0.00 0.00 37.22 5.03
383 384 2.406002 TTTCCAACAGGGGTCGCTCC 62.406 60.000 0.00 0.00 37.22 4.70
384 385 4.760047 CCAACAGGGGTCGCTCCG 62.760 72.222 0.00 0.00 37.00 4.63
397 398 2.892425 CTCCGCTCCGCCAACATC 60.892 66.667 0.00 0.00 0.00 3.06
398 399 4.812476 TCCGCTCCGCCAACATCG 62.812 66.667 0.00 0.00 0.00 3.84
439 440 3.479269 GCTCCGAAAGCCGTGTCG 61.479 66.667 0.00 0.00 45.92 4.35
482 483 4.206958 CTGCGCAACAGGATGCTA 57.793 55.556 13.05 0.00 44.21 3.49
483 484 2.470156 CTGCGCAACAGGATGCTAA 58.530 52.632 13.05 0.00 44.21 3.09
484 485 0.376152 CTGCGCAACAGGATGCTAAG 59.624 55.000 13.05 0.00 44.21 2.18
485 486 1.063166 GCGCAACAGGATGCTAAGC 59.937 57.895 0.30 0.00 44.21 3.09
486 487 1.647545 GCGCAACAGGATGCTAAGCA 61.648 55.000 0.30 0.00 44.21 3.91
487 488 0.376152 CGCAACAGGATGCTAAGCAG 59.624 55.000 0.00 0.00 43.65 4.24
493 494 0.758123 AGGATGCTAAGCAGCTCCTC 59.242 55.000 11.74 2.31 44.98 3.71
494 495 2.652251 AGGATGCTAAGCAGCTCCTCC 61.652 57.143 11.74 9.48 44.98 4.30
496 497 2.587473 GCTAAGCAGCTCCTCCGC 60.587 66.667 0.00 0.00 44.93 5.54
497 498 3.087666 GCTAAGCAGCTCCTCCGCT 62.088 63.158 0.00 0.00 44.93 5.52
498 499 1.739338 GCTAAGCAGCTCCTCCGCTA 61.739 60.000 0.00 0.00 44.93 4.26
499 500 0.313672 CTAAGCAGCTCCTCCGCTAG 59.686 60.000 0.00 0.00 38.41 3.42
500 501 1.739338 TAAGCAGCTCCTCCGCTAGC 61.739 60.000 4.06 4.06 38.41 3.42
501 502 4.940593 GCAGCTCCTCCGCTAGCG 62.941 72.222 29.93 29.93 43.63 4.26
530 531 3.136123 CCGGACAAGGCTGCCATG 61.136 66.667 22.65 21.94 0.00 3.66
531 532 3.136123 CGGACAAGGCTGCCATGG 61.136 66.667 25.70 7.63 0.00 3.66
532 533 3.455469 GGACAAGGCTGCCATGGC 61.455 66.667 30.54 30.54 42.35 4.40
538 539 3.492353 GGCTGCCATGGCCCTCTA 61.492 66.667 33.44 14.00 43.49 2.43
539 540 2.112718 GCTGCCATGGCCCTCTAG 59.887 66.667 33.44 23.58 41.09 2.43
540 541 2.750657 GCTGCCATGGCCCTCTAGT 61.751 63.158 33.44 0.00 41.09 2.57
541 542 1.147824 CTGCCATGGCCCTCTAGTG 59.852 63.158 33.44 9.55 41.09 2.74
542 543 2.203266 GCCATGGCCCTCTAGTGC 60.203 66.667 27.24 0.00 34.56 4.40
543 544 3.047807 GCCATGGCCCTCTAGTGCA 62.048 63.158 27.24 0.00 34.56 4.57
544 545 1.609239 CCATGGCCCTCTAGTGCAA 59.391 57.895 0.00 0.00 0.00 4.08
545 546 0.749454 CCATGGCCCTCTAGTGCAAC 60.749 60.000 0.00 0.00 0.00 4.17
546 547 0.749454 CATGGCCCTCTAGTGCAACC 60.749 60.000 0.00 0.00 37.80 3.77
547 548 0.916358 ATGGCCCTCTAGTGCAACCT 60.916 55.000 0.00 0.00 37.80 3.50
548 549 1.133809 TGGCCCTCTAGTGCAACCTT 61.134 55.000 0.00 0.00 37.80 3.50
549 550 0.038310 GGCCCTCTAGTGCAACCTTT 59.962 55.000 0.00 0.00 37.80 3.11
550 551 1.454201 GCCCTCTAGTGCAACCTTTC 58.546 55.000 0.00 0.00 37.80 2.62
589 590 2.420022 CGAACTTCAATGAAATCCGCCT 59.580 45.455 0.00 0.00 0.00 5.52
606 607 2.287308 CGCCTGGTTTGAACGAATTTCA 60.287 45.455 0.00 0.00 42.83 2.69
608 609 4.306600 GCCTGGTTTGAACGAATTTCATT 58.693 39.130 0.00 0.00 43.99 2.57
615 616 9.534565 TGGTTTGAACGAATTTCATTCAATTAA 57.465 25.926 18.17 4.59 43.99 1.40
641 642 0.322906 TTGTTGGCCGGATGTATGCA 60.323 50.000 5.05 0.00 0.00 3.96
646 647 1.823470 GCCGGATGTATGCAGGCAA 60.823 57.895 5.05 0.00 46.48 4.52
652 653 1.737236 GATGTATGCAGGCAACGTTGA 59.263 47.619 31.62 10.86 46.39 3.18
656 657 0.244450 ATGCAGGCAACGTTGAATGG 59.756 50.000 31.62 17.06 46.39 3.16
661 662 2.953821 CAACGTTGAATGGCGGCT 59.046 55.556 23.90 0.00 0.00 5.52
663 664 0.318614 CAACGTTGAATGGCGGCTTT 60.319 50.000 23.90 10.65 0.00 3.51
666 667 1.083489 CGTTGAATGGCGGCTTTCTA 58.917 50.000 29.35 22.68 0.00 2.10
670 671 2.288666 TGAATGGCGGCTTTCTACATC 58.711 47.619 29.35 10.95 0.00 3.06
674 675 0.947244 GGCGGCTTTCTACATCCATG 59.053 55.000 0.00 0.00 0.00 3.66
676 677 2.484770 GGCGGCTTTCTACATCCATGTA 60.485 50.000 0.00 0.00 41.97 2.29
677 678 3.403038 GCGGCTTTCTACATCCATGTAT 58.597 45.455 0.00 0.00 41.92 2.29
678 679 3.187227 GCGGCTTTCTACATCCATGTATG 59.813 47.826 0.00 0.00 41.92 2.39
679 680 4.380531 CGGCTTTCTACATCCATGTATGT 58.619 43.478 9.07 9.07 41.92 2.29
680 681 4.449068 CGGCTTTCTACATCCATGTATGTC 59.551 45.833 7.24 0.00 41.92 3.06
681 682 5.368145 GGCTTTCTACATCCATGTATGTCA 58.632 41.667 7.24 0.00 41.92 3.58
794 799 1.195900 GCAACTGCATTTTGGCACATG 59.804 47.619 9.57 0.00 39.25 3.21
1065 1079 2.050714 GTGTTCGACGACCTCGCA 60.051 61.111 0.00 0.00 42.62 5.10
1086 1100 3.151022 GTGGAGGCGGAGGAGGAG 61.151 72.222 0.00 0.00 0.00 3.69
1087 1101 4.465446 TGGAGGCGGAGGAGGAGG 62.465 72.222 0.00 0.00 0.00 4.30
1088 1102 4.144727 GGAGGCGGAGGAGGAGGA 62.145 72.222 0.00 0.00 0.00 3.71
1177 1209 2.052690 CCGATGGACACCGAGGACT 61.053 63.158 0.00 0.00 0.00 3.85
1178 1210 1.433879 CGATGGACACCGAGGACTC 59.566 63.158 0.00 0.00 0.00 3.36
1229 1261 0.890542 TGCAACATGCTCACCCTGTC 60.891 55.000 3.78 0.00 45.31 3.51
1235 1267 1.566298 ATGCTCACCCTGTCCTTCCC 61.566 60.000 0.00 0.00 0.00 3.97
1260 1292 2.082231 GCTGTGCACATCTTCATGTCT 58.918 47.619 22.00 0.00 41.69 3.41
1340 1372 2.102553 GGCGGACTCTACGACTGC 59.897 66.667 0.00 0.00 38.67 4.40
1341 1373 2.697761 GGCGGACTCTACGACTGCA 61.698 63.158 0.00 0.00 40.72 4.41
1348 1380 4.063967 CTACGACTGCACCGCCCA 62.064 66.667 3.89 0.00 0.00 5.36
1452 1484 4.517285 TGTTCTCTGCAAACTGTCTTCTT 58.483 39.130 1.74 0.00 0.00 2.52
1458 1490 3.005341 GCAAACTGTCTTCTTTGCCTC 57.995 47.619 4.14 0.00 44.30 4.70
1495 1527 0.098200 TAGTCTCGGACGATGTTGCG 59.902 55.000 0.00 0.00 37.67 4.85
1512 1544 2.616960 TGCGAGGTGCTAGTGTATTTG 58.383 47.619 0.00 0.00 46.63 2.32
1517 1549 4.497507 CGAGGTGCTAGTGTATTTGATCGA 60.498 45.833 0.00 0.00 0.00 3.59
1537 1569 1.229975 TGTCGCAGGTGCAAGATGTG 61.230 55.000 2.33 0.00 42.21 3.21
1587 1619 2.334023 GGTCCCTAGGATTGAGCTCAT 58.666 52.381 19.04 7.83 32.73 2.90
1593 1625 4.324099 CCCTAGGATTGAGCTCATAATGGG 60.324 50.000 19.04 18.88 0.00 4.00
1599 1631 1.494721 TGAGCTCATAATGGGGTTCCC 59.505 52.381 13.74 0.00 45.71 3.97
1615 1647 0.609957 TCCCGAACTGGAGCTACGAA 60.610 55.000 0.00 0.00 42.00 3.85
1653 1685 2.297597 CTGATAAGGTCCATCCCTCGAC 59.702 54.545 0.00 0.00 36.75 4.20
1654 1686 1.269998 GATAAGGTCCATCCCTCGACG 59.730 57.143 0.00 0.00 36.75 5.12
1656 1688 1.321074 AAGGTCCATCCCTCGACGTC 61.321 60.000 5.18 5.18 36.75 4.34
1682 1714 5.594926 CAAATTGTCTTCTCTGCCTGTTTT 58.405 37.500 0.00 0.00 0.00 2.43
1683 1715 4.843220 ATTGTCTTCTCTGCCTGTTTTG 57.157 40.909 0.00 0.00 0.00 2.44
1695 1727 4.305769 TGCCTGTTTTGCACATGATTTAC 58.694 39.130 0.00 0.00 33.76 2.01
1705 1737 5.601662 TGCACATGATTTACTACTAGCCTC 58.398 41.667 0.00 0.00 0.00 4.70
1726 1758 5.178252 CCTCGAATGATATTGCAAGGTAGTG 59.822 44.000 4.94 0.00 0.00 2.74
1741 1773 4.729868 AGGTAGTGGTTTCTTTGATTGCT 58.270 39.130 0.00 0.00 0.00 3.91
1795 1827 1.480954 GGGAATGAAGCTGACGGTCTA 59.519 52.381 9.88 0.00 0.00 2.59
1803 1835 0.317938 GCTGACGGTCTATACGGCTG 60.318 60.000 9.88 0.00 40.77 4.85
1817 1849 2.260434 GCTGTGCCATGTGCCTTG 59.740 61.111 4.07 0.00 40.16 3.61
1818 1850 2.260434 CTGTGCCATGTGCCTTGC 59.740 61.111 4.07 0.00 40.16 4.01
1819 1851 2.521224 TGTGCCATGTGCCTTGCA 60.521 55.556 4.07 0.00 40.16 4.08
1844 1876 2.486472 AGCTCACTGAACCCTTGATG 57.514 50.000 0.00 0.00 0.00 3.07
1847 1879 2.811873 GCTCACTGAACCCTTGATGTGT 60.812 50.000 0.00 0.00 0.00 3.72
1862 1894 1.213491 TGTGTTGGATCGACGTGTTG 58.787 50.000 0.00 0.00 0.00 3.33
1863 1895 0.110823 GTGTTGGATCGACGTGTTGC 60.111 55.000 0.00 0.00 0.00 4.17
1870 1902 4.012895 CGACGTGTTGCACCCTGC 62.013 66.667 0.00 0.00 45.29 4.85
1897 1929 2.428890 CTGATAAGGTCCGTCTCTTGCT 59.571 50.000 0.00 0.00 0.00 3.91
2022 2054 1.443802 AGCTTTACTTTCGCTGCTCC 58.556 50.000 0.00 0.00 31.82 4.70
2023 2055 1.156736 GCTTTACTTTCGCTGCTCCA 58.843 50.000 0.00 0.00 0.00 3.86
2096 2128 9.614792 ATTCCATACAGACTATTTTTACAGTCC 57.385 33.333 0.00 0.00 41.77 3.85
2103 2135 9.787435 ACAGACTATTTTTACAGTCCATAAACA 57.213 29.630 0.00 0.00 41.77 2.83
2116 2148 7.090173 CAGTCCATAAACAATGTTTGGTAAGG 58.910 38.462 20.40 13.79 33.34 2.69
2150 2182 0.322816 ATTCACATGCGGCAGAGGTT 60.323 50.000 9.25 0.00 0.00 3.50
2170 2202 4.706962 GGTTGAATTTACCCTGCTTCAGAT 59.293 41.667 0.00 0.00 32.44 2.90
2180 2212 4.219288 ACCCTGCTTCAGATGTTGAATTTC 59.781 41.667 0.00 0.00 44.48 2.17
2182 2214 4.461781 CCTGCTTCAGATGTTGAATTTCCT 59.538 41.667 0.00 0.00 44.48 3.36
2186 2218 6.072508 TGCTTCAGATGTTGAATTTCCTACAC 60.073 38.462 4.24 1.07 44.48 2.90
2197 2229 2.047274 CCTACACTGGTGGCACCG 60.047 66.667 30.14 25.29 42.58 4.94
2325 2377 4.340950 TCTCAAATGTTGTCTGGGGAAAAC 59.659 41.667 0.00 0.00 39.48 2.43
2345 2397 9.166126 GGAAAACGTCTGAAATACTTTAAGTTG 57.834 33.333 1.94 0.00 0.00 3.16
2346 2398 9.712359 GAAAACGTCTGAAATACTTTAAGTTGT 57.288 29.630 1.94 0.00 0.00 3.32
2347 2399 9.712359 AAAACGTCTGAAATACTTTAAGTTGTC 57.288 29.630 1.94 0.00 0.00 3.18
2545 2598 4.274705 GTGTGTACCATGTCAAACATCACA 59.725 41.667 7.73 7.73 36.53 3.58
2600 2653 4.781934 AGTGTGGCACTTCTTTCTTTAGT 58.218 39.130 19.83 0.00 42.59 2.24
2628 2681 5.406780 GGTTTCCATGATCACGACATAGATC 59.593 44.000 0.00 0.00 40.75 2.75
2632 2685 3.708563 TGATCACGACATAGATCGCAA 57.291 42.857 0.00 0.00 46.22 4.85
2648 2701 7.652524 AGATCGCAATATCCTGTGATACTAT 57.347 36.000 3.91 0.00 44.56 2.12
2737 2790 1.402968 CCACATCTGCACAACCATAGC 59.597 52.381 0.00 0.00 0.00 2.97
2754 2807 9.750125 CAACCATAGCTTTTTCTTAGAAAACTT 57.250 29.630 18.37 10.17 0.00 2.66
2761 2814 9.705290 AGCTTTTTCTTAGAAAACTTTGTTCAA 57.295 25.926 18.37 1.82 0.00 2.69
2843 2896 7.318909 GCATCGACGTCAACAATATGAAAATAG 59.681 37.037 17.16 0.00 0.00 1.73
2897 2950 8.966069 TTGGTATTGTGGATGTCGATAATTTA 57.034 30.769 0.00 0.00 0.00 1.40
3011 3064 6.759497 AAATTGCCTCTAGTCGCTTTATTT 57.241 33.333 5.60 6.10 0.00 1.40
3053 3106 6.053632 ACCAGTATGATGTGATTCTTGTCA 57.946 37.500 0.00 0.00 39.69 3.58
3071 3124 6.934083 TCTTGTCAGTTGCAATATTAGTGTGA 59.066 34.615 0.59 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.138859 TCATGCAACTCCCGGATACTG 59.861 52.381 0.73 0.00 0.00 2.74
5 6 1.496060 TCATGCAACTCCCGGATACT 58.504 50.000 0.73 0.00 0.00 2.12
6 7 2.037772 AGATCATGCAACTCCCGGATAC 59.962 50.000 0.73 0.00 0.00 2.24
7 8 2.300152 GAGATCATGCAACTCCCGGATA 59.700 50.000 0.73 0.00 0.00 2.59
8 9 1.071385 GAGATCATGCAACTCCCGGAT 59.929 52.381 0.73 0.00 0.00 4.18
9 10 0.465705 GAGATCATGCAACTCCCGGA 59.534 55.000 0.73 0.00 0.00 5.14
10 11 0.178767 TGAGATCATGCAACTCCCGG 59.821 55.000 0.00 0.00 0.00 5.73
11 12 1.871676 CATGAGATCATGCAACTCCCG 59.128 52.381 9.73 0.00 45.92 5.14
21 22 4.970860 ATTCCTTCGACCATGAGATCAT 57.029 40.909 0.00 0.00 36.96 2.45
22 23 5.305386 ACATATTCCTTCGACCATGAGATCA 59.695 40.000 0.00 0.00 0.00 2.92
23 24 5.788450 ACATATTCCTTCGACCATGAGATC 58.212 41.667 0.00 0.00 0.00 2.75
24 25 5.815233 ACATATTCCTTCGACCATGAGAT 57.185 39.130 0.00 0.00 0.00 2.75
25 26 6.918067 ATACATATTCCTTCGACCATGAGA 57.082 37.500 0.00 0.00 0.00 3.27
26 27 7.657354 TCAAATACATATTCCTTCGACCATGAG 59.343 37.037 0.00 0.00 0.00 2.90
27 28 7.441157 GTCAAATACATATTCCTTCGACCATGA 59.559 37.037 0.00 0.00 0.00 3.07
28 29 7.226523 TGTCAAATACATATTCCTTCGACCATG 59.773 37.037 0.00 0.00 31.43 3.66
29 30 7.279615 TGTCAAATACATATTCCTTCGACCAT 58.720 34.615 0.00 0.00 31.43 3.55
30 31 6.645306 TGTCAAATACATATTCCTTCGACCA 58.355 36.000 0.00 0.00 31.43 4.02
44 45 9.787532 GCTATTGCTTTCTTAATGTCAAATACA 57.212 29.630 0.00 0.00 38.22 2.29
45 46 9.787532 TGCTATTGCTTTCTTAATGTCAAATAC 57.212 29.630 0.00 0.00 40.48 1.89
47 48 9.709495 TTTGCTATTGCTTTCTTAATGTCAAAT 57.291 25.926 0.00 0.00 40.48 2.32
48 49 9.539825 TTTTGCTATTGCTTTCTTAATGTCAAA 57.460 25.926 0.00 0.00 40.48 2.69
49 50 9.539825 TTTTTGCTATTGCTTTCTTAATGTCAA 57.460 25.926 0.00 0.00 40.48 3.18
50 51 8.977505 GTTTTTGCTATTGCTTTCTTAATGTCA 58.022 29.630 0.00 0.00 40.48 3.58
51 52 9.196552 AGTTTTTGCTATTGCTTTCTTAATGTC 57.803 29.630 0.00 0.00 40.48 3.06
55 56 9.893305 GTCTAGTTTTTGCTATTGCTTTCTTAA 57.107 29.630 0.00 0.00 40.48 1.85
56 57 8.227791 CGTCTAGTTTTTGCTATTGCTTTCTTA 58.772 33.333 0.00 0.00 40.48 2.10
57 58 7.041372 TCGTCTAGTTTTTGCTATTGCTTTCTT 60.041 33.333 0.00 0.00 40.48 2.52
58 59 6.426937 TCGTCTAGTTTTTGCTATTGCTTTCT 59.573 34.615 0.00 0.00 40.48 2.52
59 60 6.599437 TCGTCTAGTTTTTGCTATTGCTTTC 58.401 36.000 0.00 0.00 40.48 2.62
60 61 6.554334 TCGTCTAGTTTTTGCTATTGCTTT 57.446 33.333 0.00 0.00 40.48 3.51
61 62 6.371548 TGATCGTCTAGTTTTTGCTATTGCTT 59.628 34.615 0.00 0.00 40.48 3.91
62 63 5.874810 TGATCGTCTAGTTTTTGCTATTGCT 59.125 36.000 0.00 0.00 40.48 3.91
63 64 6.106877 TGATCGTCTAGTTTTTGCTATTGC 57.893 37.500 0.00 0.00 40.20 3.56
64 65 9.803130 CATATGATCGTCTAGTTTTTGCTATTG 57.197 33.333 0.00 0.00 0.00 1.90
65 66 8.499162 GCATATGATCGTCTAGTTTTTGCTATT 58.501 33.333 6.97 0.00 0.00 1.73
66 67 7.875041 AGCATATGATCGTCTAGTTTTTGCTAT 59.125 33.333 6.97 0.00 34.10 2.97
67 68 7.210174 AGCATATGATCGTCTAGTTTTTGCTA 58.790 34.615 6.97 0.00 34.10 3.49
68 69 6.051717 AGCATATGATCGTCTAGTTTTTGCT 58.948 36.000 6.97 0.00 0.00 3.91
69 70 6.292389 AGCATATGATCGTCTAGTTTTTGC 57.708 37.500 6.97 0.00 0.00 3.68
70 71 7.954248 GCATAGCATATGATCGTCTAGTTTTTG 59.046 37.037 6.97 0.00 0.00 2.44
71 72 7.875041 AGCATAGCATATGATCGTCTAGTTTTT 59.125 33.333 6.97 0.00 0.00 1.94
72 73 7.382110 AGCATAGCATATGATCGTCTAGTTTT 58.618 34.615 6.97 0.00 0.00 2.43
73 74 6.929625 AGCATAGCATATGATCGTCTAGTTT 58.070 36.000 6.97 0.00 0.00 2.66
74 75 6.522625 AGCATAGCATATGATCGTCTAGTT 57.477 37.500 6.97 0.00 0.00 2.24
75 76 7.476667 GTTAGCATAGCATATGATCGTCTAGT 58.523 38.462 6.97 0.00 0.00 2.57
76 77 6.630840 CGTTAGCATAGCATATGATCGTCTAG 59.369 42.308 6.97 0.00 0.00 2.43
77 78 6.315393 TCGTTAGCATAGCATATGATCGTCTA 59.685 38.462 6.97 0.00 0.00 2.59
78 79 5.123979 TCGTTAGCATAGCATATGATCGTCT 59.876 40.000 6.97 0.66 0.00 4.18
79 80 5.332707 TCGTTAGCATAGCATATGATCGTC 58.667 41.667 6.97 0.00 0.00 4.20
80 81 5.310720 TCGTTAGCATAGCATATGATCGT 57.689 39.130 6.97 0.00 0.00 3.73
81 82 6.254373 ACATTCGTTAGCATAGCATATGATCG 59.746 38.462 6.97 0.00 0.00 3.69
82 83 7.063898 ACACATTCGTTAGCATAGCATATGATC 59.936 37.037 6.97 0.00 0.00 2.92
83 84 6.875726 ACACATTCGTTAGCATAGCATATGAT 59.124 34.615 6.97 1.82 0.00 2.45
84 85 6.223120 ACACATTCGTTAGCATAGCATATGA 58.777 36.000 6.97 0.00 0.00 2.15
85 86 6.367149 AGACACATTCGTTAGCATAGCATATG 59.633 38.462 0.00 0.00 0.00 1.78
86 87 6.459066 AGACACATTCGTTAGCATAGCATAT 58.541 36.000 0.00 0.00 0.00 1.78
87 88 5.842907 AGACACATTCGTTAGCATAGCATA 58.157 37.500 0.00 0.00 0.00 3.14
88 89 4.697514 AGACACATTCGTTAGCATAGCAT 58.302 39.130 0.00 0.00 0.00 3.79
89 90 4.123497 AGACACATTCGTTAGCATAGCA 57.877 40.909 0.00 0.00 0.00 3.49
90 91 4.783450 GCAAGACACATTCGTTAGCATAGC 60.783 45.833 0.00 0.00 0.00 2.97
91 92 4.260375 GGCAAGACACATTCGTTAGCATAG 60.260 45.833 0.00 0.00 0.00 2.23
92 93 3.621268 GGCAAGACACATTCGTTAGCATA 59.379 43.478 0.00 0.00 0.00 3.14
93 94 2.420022 GGCAAGACACATTCGTTAGCAT 59.580 45.455 0.00 0.00 0.00 3.79
94 95 1.804151 GGCAAGACACATTCGTTAGCA 59.196 47.619 0.00 0.00 0.00 3.49
95 96 1.130561 GGGCAAGACACATTCGTTAGC 59.869 52.381 0.00 0.00 0.00 3.09
96 97 2.422597 TGGGCAAGACACATTCGTTAG 58.577 47.619 0.00 0.00 0.00 2.34
97 98 2.552599 TGGGCAAGACACATTCGTTA 57.447 45.000 0.00 0.00 0.00 3.18
98 99 1.812571 GATGGGCAAGACACATTCGTT 59.187 47.619 0.00 0.00 0.00 3.85
99 100 1.271325 TGATGGGCAAGACACATTCGT 60.271 47.619 0.00 0.00 0.00 3.85
100 101 1.452110 TGATGGGCAAGACACATTCG 58.548 50.000 0.00 0.00 0.00 3.34
101 102 4.823442 TGATATGATGGGCAAGACACATTC 59.177 41.667 0.00 0.00 0.00 2.67
102 103 4.795469 TGATATGATGGGCAAGACACATT 58.205 39.130 0.00 0.00 0.00 2.71
103 104 4.442401 TGATATGATGGGCAAGACACAT 57.558 40.909 0.00 0.00 0.00 3.21
104 105 3.929955 TGATATGATGGGCAAGACACA 57.070 42.857 0.00 0.00 0.00 3.72
105 106 5.068636 AGAATGATATGATGGGCAAGACAC 58.931 41.667 0.00 0.00 0.00 3.67
106 107 5.311265 GAGAATGATATGATGGGCAAGACA 58.689 41.667 0.00 0.00 0.00 3.41
107 108 4.699257 GGAGAATGATATGATGGGCAAGAC 59.301 45.833 0.00 0.00 0.00 3.01
108 109 4.600547 AGGAGAATGATATGATGGGCAAGA 59.399 41.667 0.00 0.00 0.00 3.02
109 110 4.919793 AGGAGAATGATATGATGGGCAAG 58.080 43.478 0.00 0.00 0.00 4.01
110 111 6.452757 TTAGGAGAATGATATGATGGGCAA 57.547 37.500 0.00 0.00 0.00 4.52
111 112 6.216046 TCATTAGGAGAATGATATGATGGGCA 59.784 38.462 0.00 0.00 32.21 5.36
112 113 6.656902 TCATTAGGAGAATGATATGATGGGC 58.343 40.000 0.00 0.00 32.21 5.36
113 114 8.272889 ACATCATTAGGAGAATGATATGATGGG 58.727 37.037 20.51 2.53 46.80 4.00
114 115 9.110502 CACATCATTAGGAGAATGATATGATGG 57.889 37.037 20.51 10.34 46.80 3.51
115 116 9.886132 TCACATCATTAGGAGAATGATATGATG 57.114 33.333 14.26 16.89 42.36 3.07
119 120 9.902684 GGAATCACATCATTAGGAGAATGATAT 57.097 33.333 11.40 0.00 43.38 1.63
120 121 8.037166 CGGAATCACATCATTAGGAGAATGATA 58.963 37.037 11.40 0.00 43.38 2.15
121 122 6.877855 CGGAATCACATCATTAGGAGAATGAT 59.122 38.462 6.90 6.90 45.40 2.45
122 123 6.226052 CGGAATCACATCATTAGGAGAATGA 58.774 40.000 2.66 2.66 40.50 2.57
123 124 5.106791 GCGGAATCACATCATTAGGAGAATG 60.107 44.000 0.00 0.00 0.00 2.67
124 125 4.999950 GCGGAATCACATCATTAGGAGAAT 59.000 41.667 0.00 0.00 0.00 2.40
125 126 4.101585 AGCGGAATCACATCATTAGGAGAA 59.898 41.667 0.00 0.00 0.00 2.87
126 127 3.643320 AGCGGAATCACATCATTAGGAGA 59.357 43.478 0.00 0.00 0.00 3.71
127 128 4.000331 AGCGGAATCACATCATTAGGAG 58.000 45.455 0.00 0.00 0.00 3.69
128 129 5.745312 ATAGCGGAATCACATCATTAGGA 57.255 39.130 0.00 0.00 0.00 2.94
129 130 7.905604 TTAATAGCGGAATCACATCATTAGG 57.094 36.000 0.00 0.00 0.00 2.69
130 131 9.154847 TCATTAATAGCGGAATCACATCATTAG 57.845 33.333 0.00 0.00 0.00 1.73
131 132 8.935844 GTCATTAATAGCGGAATCACATCATTA 58.064 33.333 0.00 0.00 0.00 1.90
132 133 7.445096 TGTCATTAATAGCGGAATCACATCATT 59.555 33.333 0.00 0.00 0.00 2.57
133 134 6.936335 TGTCATTAATAGCGGAATCACATCAT 59.064 34.615 0.00 0.00 0.00 2.45
134 135 6.287525 TGTCATTAATAGCGGAATCACATCA 58.712 36.000 0.00 0.00 0.00 3.07
135 136 6.785488 TGTCATTAATAGCGGAATCACATC 57.215 37.500 0.00 0.00 0.00 3.06
136 137 6.017109 GGTTGTCATTAATAGCGGAATCACAT 60.017 38.462 0.00 0.00 0.00 3.21
137 138 5.295787 GGTTGTCATTAATAGCGGAATCACA 59.704 40.000 0.00 0.00 0.00 3.58
138 139 5.277828 GGGTTGTCATTAATAGCGGAATCAC 60.278 44.000 0.00 0.00 0.00 3.06
139 140 4.819630 GGGTTGTCATTAATAGCGGAATCA 59.180 41.667 0.00 0.00 0.00 2.57
140 141 4.819630 TGGGTTGTCATTAATAGCGGAATC 59.180 41.667 0.00 0.00 0.00 2.52
141 142 4.787551 TGGGTTGTCATTAATAGCGGAAT 58.212 39.130 0.00 0.00 0.00 3.01
142 143 4.223556 TGGGTTGTCATTAATAGCGGAA 57.776 40.909 0.00 0.00 0.00 4.30
143 144 3.916359 TGGGTTGTCATTAATAGCGGA 57.084 42.857 0.00 0.00 0.00 5.54
144 145 3.882888 ACATGGGTTGTCATTAATAGCGG 59.117 43.478 0.00 0.00 30.89 5.52
156 157 4.040047 TCCTCATCATAGACATGGGTTGT 58.960 43.478 0.00 0.00 42.79 3.32
157 158 4.694760 TCCTCATCATAGACATGGGTTG 57.305 45.455 0.00 0.00 32.61 3.77
158 159 5.440610 GTTTCCTCATCATAGACATGGGTT 58.559 41.667 0.00 0.00 32.61 4.11
159 160 4.141390 GGTTTCCTCATCATAGACATGGGT 60.141 45.833 0.00 0.00 32.61 4.51
160 161 4.103785 AGGTTTCCTCATCATAGACATGGG 59.896 45.833 0.00 0.00 32.61 4.00
161 162 5.301835 AGGTTTCCTCATCATAGACATGG 57.698 43.478 0.00 0.00 32.61 3.66
162 163 7.227512 GGTTAAGGTTTCCTCATCATAGACATG 59.772 40.741 0.00 0.00 30.89 3.21
163 164 7.092444 TGGTTAAGGTTTCCTCATCATAGACAT 60.092 37.037 0.00 0.00 30.89 3.06
164 165 6.214615 TGGTTAAGGTTTCCTCATCATAGACA 59.785 38.462 0.00 0.00 30.89 3.41
165 166 6.650120 TGGTTAAGGTTTCCTCATCATAGAC 58.350 40.000 0.00 0.00 30.89 2.59
166 167 6.884472 TGGTTAAGGTTTCCTCATCATAGA 57.116 37.500 0.00 0.00 30.89 1.98
167 168 7.512992 AGATGGTTAAGGTTTCCTCATCATAG 58.487 38.462 13.68 0.00 35.15 2.23
168 169 7.451731 AGATGGTTAAGGTTTCCTCATCATA 57.548 36.000 13.68 0.00 35.15 2.15
169 170 6.332976 AGATGGTTAAGGTTTCCTCATCAT 57.667 37.500 13.68 5.97 35.15 2.45
170 171 5.779241 AGATGGTTAAGGTTTCCTCATCA 57.221 39.130 13.68 2.28 35.15 3.07
171 172 7.468141 AAAAGATGGTTAAGGTTTCCTCATC 57.532 36.000 6.94 6.94 33.81 2.92
172 173 8.950007 TTAAAAGATGGTTAAGGTTTCCTCAT 57.050 30.769 0.00 0.00 30.89 2.90
173 174 8.950007 ATTAAAAGATGGTTAAGGTTTCCTCA 57.050 30.769 0.00 0.00 30.89 3.86
174 175 9.020731 TGATTAAAAGATGGTTAAGGTTTCCTC 57.979 33.333 0.00 0.00 30.89 3.71
175 176 8.950007 TGATTAAAAGATGGTTAAGGTTTCCT 57.050 30.769 0.00 0.00 33.87 3.36
176 177 9.419297 GTTGATTAAAAGATGGTTAAGGTTTCC 57.581 33.333 0.00 0.00 0.00 3.13
177 178 9.124807 CGTTGATTAAAAGATGGTTAAGGTTTC 57.875 33.333 0.00 0.00 0.00 2.78
178 179 8.852135 TCGTTGATTAAAAGATGGTTAAGGTTT 58.148 29.630 0.00 0.00 0.00 3.27
179 180 8.398878 TCGTTGATTAAAAGATGGTTAAGGTT 57.601 30.769 0.00 0.00 0.00 3.50
180 181 7.361799 GCTCGTTGATTAAAAGATGGTTAAGGT 60.362 37.037 0.00 0.00 0.00 3.50
181 182 6.967199 GCTCGTTGATTAAAAGATGGTTAAGG 59.033 38.462 0.00 0.00 0.00 2.69
182 183 7.752695 AGCTCGTTGATTAAAAGATGGTTAAG 58.247 34.615 0.00 0.00 0.00 1.85
183 184 7.681939 AGCTCGTTGATTAAAAGATGGTTAA 57.318 32.000 0.00 0.00 0.00 2.01
184 185 8.780846 TTAGCTCGTTGATTAAAAGATGGTTA 57.219 30.769 0.00 0.00 0.00 2.85
185 186 7.681939 TTAGCTCGTTGATTAAAAGATGGTT 57.318 32.000 0.00 0.00 0.00 3.67
186 187 7.770897 AGATTAGCTCGTTGATTAAAAGATGGT 59.229 33.333 0.00 0.00 0.00 3.55
187 188 8.147642 AGATTAGCTCGTTGATTAAAAGATGG 57.852 34.615 0.00 0.00 0.00 3.51
194 195 8.784994 CCTCTACTAGATTAGCTCGTTGATTAA 58.215 37.037 0.00 0.00 0.00 1.40
195 196 7.094720 GCCTCTACTAGATTAGCTCGTTGATTA 60.095 40.741 0.00 0.00 0.00 1.75
196 197 6.294286 GCCTCTACTAGATTAGCTCGTTGATT 60.294 42.308 0.00 0.00 0.00 2.57
197 198 5.182380 GCCTCTACTAGATTAGCTCGTTGAT 59.818 44.000 0.00 0.00 0.00 2.57
198 199 4.515944 GCCTCTACTAGATTAGCTCGTTGA 59.484 45.833 0.00 0.00 0.00 3.18
199 200 4.517453 AGCCTCTACTAGATTAGCTCGTTG 59.483 45.833 0.00 0.00 0.00 4.10
200 201 4.721132 AGCCTCTACTAGATTAGCTCGTT 58.279 43.478 0.00 0.00 0.00 3.85
201 202 4.360951 AGCCTCTACTAGATTAGCTCGT 57.639 45.455 0.00 0.00 0.00 4.18
202 203 5.935789 AGTAAGCCTCTACTAGATTAGCTCG 59.064 44.000 0.00 0.00 30.13 5.03
203 204 6.150474 CCAGTAAGCCTCTACTAGATTAGCTC 59.850 46.154 0.00 0.00 30.77 4.09
204 205 6.007703 CCAGTAAGCCTCTACTAGATTAGCT 58.992 44.000 0.00 0.00 30.77 3.32
205 206 5.184287 CCCAGTAAGCCTCTACTAGATTAGC 59.816 48.000 0.00 0.00 30.77 3.09
206 207 5.712917 CCCCAGTAAGCCTCTACTAGATTAG 59.287 48.000 0.00 0.00 30.77 1.73
207 208 5.374753 TCCCCAGTAAGCCTCTACTAGATTA 59.625 44.000 0.00 0.00 30.77 1.75
208 209 4.170251 TCCCCAGTAAGCCTCTACTAGATT 59.830 45.833 0.00 0.00 30.77 2.40
209 210 3.727923 TCCCCAGTAAGCCTCTACTAGAT 59.272 47.826 0.00 0.00 30.77 1.98
210 211 3.117587 GTCCCCAGTAAGCCTCTACTAGA 60.118 52.174 0.00 0.00 30.77 2.43
211 212 3.117436 AGTCCCCAGTAAGCCTCTACTAG 60.117 52.174 0.00 0.00 30.77 2.57
212 213 2.857498 AGTCCCCAGTAAGCCTCTACTA 59.143 50.000 0.00 0.00 30.77 1.82
213 214 1.646977 AGTCCCCAGTAAGCCTCTACT 59.353 52.381 0.00 0.00 32.13 2.57
214 215 2.162264 AGTCCCCAGTAAGCCTCTAC 57.838 55.000 0.00 0.00 0.00 2.59
215 216 2.942604 AAGTCCCCAGTAAGCCTCTA 57.057 50.000 0.00 0.00 0.00 2.43
216 217 2.044630 ACTAAGTCCCCAGTAAGCCTCT 59.955 50.000 0.00 0.00 0.00 3.69
217 218 2.468915 ACTAAGTCCCCAGTAAGCCTC 58.531 52.381 0.00 0.00 0.00 4.70
218 219 2.644060 ACTAAGTCCCCAGTAAGCCT 57.356 50.000 0.00 0.00 0.00 4.58
219 220 5.123936 CAAATACTAAGTCCCCAGTAAGCC 58.876 45.833 0.00 0.00 31.35 4.35
220 221 4.575236 GCAAATACTAAGTCCCCAGTAAGC 59.425 45.833 0.00 0.00 31.35 3.09
221 222 5.990668 AGCAAATACTAAGTCCCCAGTAAG 58.009 41.667 0.00 0.00 31.35 2.34
222 223 6.382919 AAGCAAATACTAAGTCCCCAGTAA 57.617 37.500 0.00 0.00 31.35 2.24
223 224 7.126726 ACATAAGCAAATACTAAGTCCCCAGTA 59.873 37.037 0.00 0.00 0.00 2.74
224 225 4.929146 AAGCAAATACTAAGTCCCCAGT 57.071 40.909 0.00 0.00 0.00 4.00
225 226 6.357367 ACATAAGCAAATACTAAGTCCCCAG 58.643 40.000 0.00 0.00 0.00 4.45
226 227 6.321821 ACATAAGCAAATACTAAGTCCCCA 57.678 37.500 0.00 0.00 0.00 4.96
227 228 8.919777 AATACATAAGCAAATACTAAGTCCCC 57.080 34.615 0.00 0.00 0.00 4.81
228 229 9.555727 TGAATACATAAGCAAATACTAAGTCCC 57.444 33.333 0.00 0.00 0.00 4.46
235 236 9.177608 ACATGTGTGAATACATAAGCAAATACT 57.822 29.630 0.00 0.00 39.17 2.12
334 335 8.654094 GCCCTAGAGGTAATAATAAAGTGGTTA 58.346 37.037 0.00 0.00 38.26 2.85
335 336 7.128263 TGCCCTAGAGGTAATAATAAAGTGGTT 59.872 37.037 0.00 0.00 38.26 3.67
336 337 6.618196 TGCCCTAGAGGTAATAATAAAGTGGT 59.382 38.462 0.00 0.00 38.26 4.16
337 338 7.074653 TGCCCTAGAGGTAATAATAAAGTGG 57.925 40.000 0.00 0.00 38.26 4.00
343 344 9.569074 TGGAAATATGCCCTAGAGGTAATAATA 57.431 33.333 0.00 0.00 38.26 0.98
344 345 8.463055 TGGAAATATGCCCTAGAGGTAATAAT 57.537 34.615 0.00 0.00 38.26 1.28
345 346 7.881912 TGGAAATATGCCCTAGAGGTAATAA 57.118 36.000 0.00 0.00 38.26 1.40
346 347 7.293771 TGTTGGAAATATGCCCTAGAGGTAATA 59.706 37.037 0.00 0.00 38.26 0.98
347 348 6.102615 TGTTGGAAATATGCCCTAGAGGTAAT 59.897 38.462 0.00 0.00 38.26 1.89
348 349 5.430417 TGTTGGAAATATGCCCTAGAGGTAA 59.570 40.000 0.00 0.00 38.26 2.85
349 350 4.972568 TGTTGGAAATATGCCCTAGAGGTA 59.027 41.667 0.00 0.00 38.26 3.08
350 351 3.785887 TGTTGGAAATATGCCCTAGAGGT 59.214 43.478 0.00 0.00 38.26 3.85
351 352 4.392940 CTGTTGGAAATATGCCCTAGAGG 58.607 47.826 0.00 0.00 39.47 3.69
352 353 4.392940 CCTGTTGGAAATATGCCCTAGAG 58.607 47.826 0.00 0.00 34.57 2.43
353 354 3.138283 CCCTGTTGGAAATATGCCCTAGA 59.862 47.826 0.00 0.00 35.39 2.43
354 355 3.490348 CCCTGTTGGAAATATGCCCTAG 58.510 50.000 0.00 0.00 35.39 3.02
355 356 2.176798 CCCCTGTTGGAAATATGCCCTA 59.823 50.000 0.00 0.00 35.39 3.53
356 357 1.062962 CCCCTGTTGGAAATATGCCCT 60.063 52.381 0.00 0.00 35.39 5.19
357 358 1.342975 ACCCCTGTTGGAAATATGCCC 60.343 52.381 0.00 0.00 35.39 5.36
358 359 2.031870 GACCCCTGTTGGAAATATGCC 58.968 52.381 0.00 0.00 35.39 4.40
359 360 1.676006 CGACCCCTGTTGGAAATATGC 59.324 52.381 0.00 0.00 35.39 3.14
360 361 1.676006 GCGACCCCTGTTGGAAATATG 59.324 52.381 0.00 0.00 35.39 1.78
361 362 1.564348 AGCGACCCCTGTTGGAAATAT 59.436 47.619 0.00 0.00 35.39 1.28
362 363 0.988832 AGCGACCCCTGTTGGAAATA 59.011 50.000 0.00 0.00 35.39 1.40
363 364 0.322546 GAGCGACCCCTGTTGGAAAT 60.323 55.000 0.00 0.00 35.39 2.17
364 365 1.072505 GAGCGACCCCTGTTGGAAA 59.927 57.895 0.00 0.00 35.39 3.13
365 366 2.747686 GAGCGACCCCTGTTGGAA 59.252 61.111 0.00 0.00 35.39 3.53
366 367 3.319198 GGAGCGACCCCTGTTGGA 61.319 66.667 0.00 0.00 35.39 3.53
367 368 4.760047 CGGAGCGACCCCTGTTGG 62.760 72.222 0.00 0.00 34.64 3.77
448 449 4.228097 GTGCATAGTGCCGCTGCG 62.228 66.667 16.34 16.34 44.23 5.18
449 450 2.821366 AGTGCATAGTGCCGCTGC 60.821 61.111 0.00 0.00 44.23 5.25
450 451 3.095911 CAGTGCATAGTGCCGCTG 58.904 61.111 0.00 4.66 44.23 5.18
451 452 2.821366 GCAGTGCATAGTGCCGCT 60.821 61.111 11.09 0.00 45.53 5.52
462 463 2.177531 CATCCTGTTGCGCAGTGC 59.822 61.111 11.31 4.58 43.55 4.40
463 464 2.177531 GCATCCTGTTGCGCAGTG 59.822 61.111 11.31 4.71 43.55 3.66
469 470 0.100146 GCTGCTTAGCATCCTGTTGC 59.900 55.000 7.58 1.55 43.09 4.17
470 471 1.669779 GAGCTGCTTAGCATCCTGTTG 59.330 52.381 7.58 0.00 38.13 3.33
471 472 1.407989 GGAGCTGCTTAGCATCCTGTT 60.408 52.381 17.00 0.33 38.13 3.16
472 473 0.179936 GGAGCTGCTTAGCATCCTGT 59.820 55.000 17.00 0.00 38.13 4.00
473 474 0.469070 AGGAGCTGCTTAGCATCCTG 59.531 55.000 23.79 7.59 39.33 3.86
474 475 0.758123 GAGGAGCTGCTTAGCATCCT 59.242 55.000 24.42 24.42 41.59 3.24
475 476 0.250252 GGAGGAGCTGCTTAGCATCC 60.250 60.000 16.66 16.66 38.13 3.51
476 477 0.599728 CGGAGGAGCTGCTTAGCATC 60.600 60.000 9.91 3.06 38.13 3.91
477 478 1.445095 CGGAGGAGCTGCTTAGCAT 59.555 57.895 9.91 0.00 38.13 3.79
478 479 2.895680 CGGAGGAGCTGCTTAGCA 59.104 61.111 9.91 6.76 37.25 3.49
479 480 2.587473 GCGGAGGAGCTGCTTAGC 60.587 66.667 9.91 14.37 45.70 3.09
513 514 3.136123 CATGGCAGCCTTGTCCGG 61.136 66.667 17.59 0.00 0.00 5.14
514 515 3.136123 CCATGGCAGCCTTGTCCG 61.136 66.667 22.59 7.04 0.00 4.79
515 516 3.455469 GCCATGGCAGCCTTGTCC 61.455 66.667 32.08 11.66 41.49 4.02
522 523 2.112718 CTAGAGGGCCATGGCAGC 59.887 66.667 36.56 24.06 44.11 5.25
523 524 1.147824 CACTAGAGGGCCATGGCAG 59.852 63.158 36.56 26.31 44.11 4.85
524 525 3.047807 GCACTAGAGGGCCATGGCA 62.048 63.158 36.56 16.18 44.11 4.92
525 526 2.203266 GCACTAGAGGGCCATGGC 60.203 66.667 29.47 29.47 41.06 4.40
526 527 0.749454 GTTGCACTAGAGGGCCATGG 60.749 60.000 7.63 7.63 0.00 3.66
527 528 0.749454 GGTTGCACTAGAGGGCCATG 60.749 60.000 6.18 0.00 0.00 3.66
528 529 0.916358 AGGTTGCACTAGAGGGCCAT 60.916 55.000 6.18 0.00 0.00 4.40
529 530 1.133809 AAGGTTGCACTAGAGGGCCA 61.134 55.000 6.18 0.00 0.00 5.36
530 531 0.038310 AAAGGTTGCACTAGAGGGCC 59.962 55.000 0.32 0.00 0.00 5.80
531 532 1.003696 AGAAAGGTTGCACTAGAGGGC 59.996 52.381 0.00 0.00 0.00 5.19
532 533 3.425162 AAGAAAGGTTGCACTAGAGGG 57.575 47.619 0.00 0.00 0.00 4.30
533 534 5.940470 ACATAAAGAAAGGTTGCACTAGAGG 59.060 40.000 0.00 0.00 0.00 3.69
534 535 8.547967 TTACATAAAGAAAGGTTGCACTAGAG 57.452 34.615 0.00 0.00 0.00 2.43
535 536 8.911918 TTTACATAAAGAAAGGTTGCACTAGA 57.088 30.769 0.00 0.00 0.00 2.43
544 545 9.675464 TCGGACATAATTTACATAAAGAAAGGT 57.325 29.630 0.00 0.00 0.00 3.50
578 579 1.611491 GTTCAAACCAGGCGGATTTCA 59.389 47.619 2.43 0.00 35.59 2.69
608 609 5.641209 CCGGCCAACAATTCAAATTAATTGA 59.359 36.000 16.88 0.00 45.61 2.57
615 616 2.566724 ACATCCGGCCAACAATTCAAAT 59.433 40.909 2.24 0.00 0.00 2.32
623 624 0.747644 CTGCATACATCCGGCCAACA 60.748 55.000 2.24 0.00 0.00 3.33
641 642 2.625823 CCGCCATTCAACGTTGCCT 61.626 57.895 23.47 9.86 0.00 4.75
646 647 0.889186 AGAAAGCCGCCATTCAACGT 60.889 50.000 8.69 0.00 0.00 3.99
652 653 1.064758 TGGATGTAGAAAGCCGCCATT 60.065 47.619 0.00 0.00 0.00 3.16
656 657 1.668419 ACATGGATGTAGAAAGCCGC 58.332 50.000 0.00 0.00 39.68 6.53
674 675 2.246719 GGAGCAGTCCCATGACATAC 57.753 55.000 0.00 0.00 44.33 2.39
989 1003 2.592861 GTGCCATGGCGAGGGATC 60.593 66.667 30.87 11.42 45.51 3.36
990 1004 4.195334 GGTGCCATGGCGAGGGAT 62.195 66.667 30.87 0.00 45.51 3.85
1077 1091 1.231928 GTCCTCCTCCTCCTCCTCC 59.768 68.421 0.00 0.00 0.00 4.30
1078 1092 1.152839 CGTCCTCCTCCTCCTCCTC 60.153 68.421 0.00 0.00 0.00 3.71
1079 1093 3.011885 CGTCCTCCTCCTCCTCCT 58.988 66.667 0.00 0.00 0.00 3.69
1080 1094 2.835895 GCGTCCTCCTCCTCCTCC 60.836 72.222 0.00 0.00 0.00 4.30
1081 1095 2.605854 TACGCGTCCTCCTCCTCCTC 62.606 65.000 18.63 0.00 0.00 3.71
1082 1096 2.677289 TACGCGTCCTCCTCCTCCT 61.677 63.158 18.63 0.00 0.00 3.69
1083 1097 2.124403 TACGCGTCCTCCTCCTCC 60.124 66.667 18.63 0.00 0.00 4.30
1084 1098 2.821688 CGTACGCGTCCTCCTCCTC 61.822 68.421 18.63 0.00 0.00 3.71
1085 1099 2.823147 CGTACGCGTCCTCCTCCT 60.823 66.667 18.63 0.00 0.00 3.69
1086 1100 2.821366 TCGTACGCGTCCTCCTCC 60.821 66.667 18.63 0.00 39.49 4.30
1087 1101 2.708255 CTCGTACGCGTCCTCCTC 59.292 66.667 18.63 0.00 39.49 3.71
1088 1102 2.823147 CCTCGTACGCGTCCTCCT 60.823 66.667 18.63 0.00 39.49 3.69
1187 1219 2.115911 CAGCCGGAGTAGACGAGCT 61.116 63.158 5.05 0.00 38.00 4.09
1190 1222 3.506096 CGCAGCCGGAGTAGACGA 61.506 66.667 5.05 0.00 0.00 4.20
1216 1248 1.566298 GGGAAGGACAGGGTGAGCAT 61.566 60.000 0.00 0.00 0.00 3.79
1241 1273 2.159558 GCAGACATGAAGATGTGCACAG 60.160 50.000 25.84 11.91 43.22 3.66
1260 1292 2.121963 ACCTTGTCAGGGGAGGCA 60.122 61.111 5.89 0.00 46.01 4.75
1384 1416 2.670414 CAGAGTCGAAATTGCACTCCTC 59.330 50.000 10.63 0.00 37.82 3.71
1394 1426 3.170717 TCAGGGGTTACAGAGTCGAAAT 58.829 45.455 0.00 0.00 0.00 2.17
1468 1500 1.931841 TCGTCCGAGACTACTGAATCG 59.068 52.381 3.15 0.00 35.02 3.34
1495 1527 4.933330 TCGATCAAATACACTAGCACCTC 58.067 43.478 0.00 0.00 0.00 3.85
1512 1544 1.083806 TTGCACCTGCGACATCGATC 61.084 55.000 5.26 0.00 45.83 3.69
1517 1549 0.321919 ACATCTTGCACCTGCGACAT 60.322 50.000 0.00 0.00 45.83 3.06
1537 1569 4.445545 CCCGCGAGCGACAAAAGC 62.446 66.667 19.72 0.00 42.83 3.51
1599 1631 1.846782 CGAATTCGTAGCTCCAGTTCG 59.153 52.381 19.67 0.00 34.11 3.95
1601 1633 2.492484 AGTCGAATTCGTAGCTCCAGTT 59.508 45.455 25.93 0.67 40.80 3.16
1604 1636 2.097629 CAGAGTCGAATTCGTAGCTCCA 59.902 50.000 28.00 11.02 40.80 3.86
1615 1647 3.314307 TCAGGGGATACAGAGTCGAAT 57.686 47.619 0.00 0.00 39.74 3.34
1653 1685 3.666374 GCAGAGAAGACAATTTGCTGACG 60.666 47.826 0.00 0.00 0.00 4.35
1654 1686 3.365767 GGCAGAGAAGACAATTTGCTGAC 60.366 47.826 0.00 0.00 0.00 3.51
1656 1688 2.818432 AGGCAGAGAAGACAATTTGCTG 59.182 45.455 0.00 0.00 0.00 4.41
1682 1714 5.601662 GAGGCTAGTAGTAAATCATGTGCA 58.398 41.667 0.00 0.00 0.00 4.57
1683 1715 4.681942 CGAGGCTAGTAGTAAATCATGTGC 59.318 45.833 0.00 0.00 0.00 4.57
1695 1727 5.714047 TGCAATATCATTCGAGGCTAGTAG 58.286 41.667 0.00 0.00 0.00 2.57
1705 1737 4.816385 ACCACTACCTTGCAATATCATTCG 59.184 41.667 0.00 0.00 0.00 3.34
1726 1758 2.319472 GCGACAGCAATCAAAGAAACC 58.681 47.619 0.00 0.00 44.35 3.27
1741 1773 0.531753 TACAGCTTGCAACTGCGACA 60.532 50.000 21.43 8.20 45.83 4.35
1782 1814 0.384669 GCCGTATAGACCGTCAGCTT 59.615 55.000 0.40 0.00 0.00 3.74
1815 1847 1.595109 CAGTGAGCTGGTCGTGCAA 60.595 57.895 0.00 0.00 39.01 4.08
1816 1848 2.026945 TTCAGTGAGCTGGTCGTGCA 62.027 55.000 0.00 0.00 42.78 4.57
1817 1849 1.300931 TTCAGTGAGCTGGTCGTGC 60.301 57.895 0.00 0.00 42.78 5.34
1818 1850 0.946221 GGTTCAGTGAGCTGGTCGTG 60.946 60.000 6.95 2.81 42.78 4.35
1819 1851 1.367840 GGTTCAGTGAGCTGGTCGT 59.632 57.895 6.95 0.00 42.78 4.34
1820 1852 1.374758 GGGTTCAGTGAGCTGGTCG 60.375 63.158 6.95 0.00 42.78 4.79
1821 1853 0.398318 AAGGGTTCAGTGAGCTGGTC 59.602 55.000 6.95 0.00 42.78 4.02
1844 1876 0.110823 GCAACACGTCGATCCAACAC 60.111 55.000 0.00 0.00 0.00 3.32
1847 1879 1.225376 GGTGCAACACGTCGATCCAA 61.225 55.000 0.00 0.00 39.98 3.53
1862 1894 1.626356 TATCAGGGAGTGCAGGGTGC 61.626 60.000 0.00 0.00 45.29 5.01
1863 1895 0.911769 TTATCAGGGAGTGCAGGGTG 59.088 55.000 0.00 0.00 0.00 4.61
1870 1902 1.409427 GACGGACCTTATCAGGGAGTG 59.591 57.143 0.00 0.00 46.01 3.51
1872 1904 1.957877 GAGACGGACCTTATCAGGGAG 59.042 57.143 0.00 0.00 46.01 4.30
1897 1929 9.717942 AAGGCAAAATTATACTAATTGCAAACA 57.282 25.926 1.71 0.00 46.12 2.83
1919 1951 1.464997 CGTACAAAAGGCAGAGAAGGC 59.535 52.381 0.00 0.00 0.00 4.35
1998 2030 2.665794 GCAGCGAAAGTAAAGCTTCCAC 60.666 50.000 0.00 0.68 39.48 4.02
2001 2033 2.159639 GGAGCAGCGAAAGTAAAGCTTC 60.160 50.000 0.00 0.00 39.48 3.86
2022 2054 0.955919 GGGTTGAGCTCGTTTCCCTG 60.956 60.000 20.60 0.00 32.89 4.45
2023 2055 1.375326 GGGTTGAGCTCGTTTCCCT 59.625 57.895 20.60 0.00 32.89 4.20
2096 2128 9.921637 ACATAACCTTACCAAACATTGTTTATG 57.078 29.630 14.13 12.56 40.26 1.90
2103 2135 5.047377 CCAGCACATAACCTTACCAAACATT 60.047 40.000 0.00 0.00 0.00 2.71
2116 2148 5.516996 CATGTGAATCATCCAGCACATAAC 58.483 41.667 0.00 0.00 46.76 1.89
2150 2182 4.922206 ACATCTGAAGCAGGGTAAATTCA 58.078 39.130 0.00 0.00 31.51 2.57
2170 2202 4.141287 CCACCAGTGTAGGAAATTCAACA 58.859 43.478 0.00 0.00 0.00 3.33
2180 2212 2.047274 CGGTGCCACCAGTGTAGG 60.047 66.667 15.45 0.00 38.47 3.18
2182 2214 1.227704 CAACGGTGCCACCAGTGTA 60.228 57.895 15.45 0.00 38.47 2.90
2186 2218 1.300971 CTCATCAACGGTGCCACCAG 61.301 60.000 15.45 9.33 38.47 4.00
2197 2229 5.526846 CAGCTTCTCCCTAAATCTCATCAAC 59.473 44.000 0.00 0.00 0.00 3.18
2325 2377 7.001922 CACGACAACTTAAAGTATTTCAGACG 58.998 38.462 0.00 0.00 40.09 4.18
2345 2397 2.737376 GGCGACTCCCAACACGAC 60.737 66.667 0.00 0.00 0.00 4.34
2346 2398 2.313051 TTTGGCGACTCCCAACACGA 62.313 55.000 0.00 0.00 44.17 4.35
2347 2399 1.234615 ATTTGGCGACTCCCAACACG 61.235 55.000 0.00 0.00 44.17 4.49
2484 2537 7.976734 CCAGAACAACTAGAGGTAGTTAATCAG 59.023 40.741 0.00 0.00 46.01 2.90
2494 2547 1.272769 GCGACCAGAACAACTAGAGGT 59.727 52.381 0.00 0.00 0.00 3.85
2545 2598 4.216257 ACTGACAAAAATCGCAGCATAACT 59.784 37.500 0.00 0.00 31.74 2.24
2560 2613 6.425721 GCCACACTAGTATTACAACTGACAAA 59.574 38.462 0.00 0.00 0.00 2.83
2562 2615 5.011227 TGCCACACTAGTATTACAACTGACA 59.989 40.000 0.00 0.00 0.00 3.58
2628 2681 7.093354 AGAACATAGTATCACAGGATATTGCG 58.907 38.462 0.00 0.00 38.24 4.85
2632 2685 9.601810 TGGTAAGAACATAGTATCACAGGATAT 57.398 33.333 0.00 0.00 38.24 1.63
2648 2701 4.365514 TCATTTGGCTCTGGTAAGAACA 57.634 40.909 0.00 0.00 30.03 3.18
2754 2807 8.690203 TTTGAAATGGAGAGAGTATTGAACAA 57.310 30.769 0.00 0.00 0.00 2.83
2843 2896 3.812262 TCATCACATCCACCATGACATC 58.188 45.455 0.00 0.00 36.21 3.06
2852 2905 7.281040 ACCAAATCAATATCATCACATCCAC 57.719 36.000 0.00 0.00 0.00 4.02
2911 2964 9.213819 CCTAAGTTAAACGTTGTAAAGTTTGAC 57.786 33.333 16.98 16.98 43.01 3.18
3011 3064 3.508402 TGGTAATGCTTGACACGAGACTA 59.492 43.478 0.00 0.00 0.00 2.59
3053 3106 5.643777 GGAGTGTCACACTAATATTGCAACT 59.356 40.000 11.42 0.00 45.44 3.16
3071 3124 5.505181 ACCATGTCTAAATCAAGGAGTGT 57.495 39.130 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.