Multiple sequence alignment - TraesCS7B01G323200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G323200 chr7B 100.000 4962 0 0 1 4962 573923348 573928309 0.000000e+00 9164.0
1 TraesCS7B01G323200 chr7B 87.574 169 15 3 3548 3715 574476896 574477059 1.820000e-44 191.0
2 TraesCS7B01G323200 chr7B 94.167 120 7 0 4577 4696 470986824 470986943 3.050000e-42 183.0
3 TraesCS7B01G323200 chr7B 88.321 137 12 4 4302 4435 513813795 513813930 1.430000e-35 161.0
4 TraesCS7B01G323200 chr7D 93.898 4294 165 39 1 4258 533758276 533762508 0.000000e+00 6388.0
5 TraesCS7B01G323200 chr7D 89.157 166 13 4 3548 3713 533912123 533912283 8.420000e-48 202.0
6 TraesCS7B01G323200 chr7D 89.630 135 12 2 4316 4448 89485469 89485335 2.380000e-38 171.0
7 TraesCS7B01G323200 chr7D 100.000 37 0 0 4265 4301 533762627 533762663 8.910000e-08 69.4
8 TraesCS7B01G323200 chr7A 89.914 1517 121 23 1 1494 613177156 613178663 0.000000e+00 1925.0
9 TraesCS7B01G323200 chr7A 95.973 894 34 2 3359 4250 613180891 613181784 0.000000e+00 1450.0
10 TraesCS7B01G323200 chr7A 92.034 703 38 7 2440 3137 613179799 613180488 0.000000e+00 972.0
11 TraesCS7B01G323200 chr7A 80.158 761 105 19 1539 2289 613178674 613179398 1.220000e-145 527.0
12 TraesCS7B01G323200 chr7A 88.698 407 28 7 2736 3137 613180503 613180896 9.660000e-132 481.0
13 TraesCS7B01G323200 chr7A 92.937 269 18 1 4693 4961 613182146 613182413 1.670000e-104 390.0
14 TraesCS7B01G323200 chr7A 87.952 166 15 4 3548 3713 613639499 613639659 1.820000e-44 191.0
15 TraesCS7B01G323200 chr7A 95.652 115 4 1 4586 4700 403363384 403363497 3.050000e-42 183.0
16 TraesCS7B01G323200 chr7A 94.792 96 4 1 4496 4591 613182055 613182149 1.110000e-31 148.0
17 TraesCS7B01G323200 chr7A 96.970 33 1 0 4432 4464 613182013 613182045 6.940000e-04 56.5
18 TraesCS7B01G323200 chrUn 83.256 430 57 10 964 1387 122475476 122475896 1.010000e-101 381.0
19 TraesCS7B01G323200 chrUn 90.476 126 12 0 4318 4443 87827392 87827517 3.070000e-37 167.0
20 TraesCS7B01G323200 chrUn 90.476 126 12 0 4318 4443 309972437 309972562 3.070000e-37 167.0
21 TraesCS7B01G323200 chr5B 97.273 110 3 0 4587 4696 167283424 167283533 2.360000e-43 187.0
22 TraesCS7B01G323200 chr3B 97.248 109 3 0 4587 4695 173580771 173580879 8.480000e-43 185.0
23 TraesCS7B01G323200 chr3B 97.222 108 3 0 4588 4695 214560265 214560158 3.050000e-42 183.0
24 TraesCS7B01G323200 chr3B 94.068 118 7 0 4585 4702 928996 929113 3.950000e-41 180.0
25 TraesCS7B01G323200 chr3B 94.828 116 5 1 4585 4700 84898678 84898792 3.950000e-41 180.0
26 TraesCS7B01G323200 chr6B 94.118 119 7 0 4581 4699 130967938 130967820 1.100000e-41 182.0
27 TraesCS7B01G323200 chr6B 91.935 124 9 1 4319 4441 27077971 27078094 6.600000e-39 172.0
28 TraesCS7B01G323200 chr6A 93.496 123 7 1 4589 4710 542057163 542057041 1.100000e-41 182.0
29 TraesCS7B01G323200 chr2A 91.603 131 10 1 4318 4447 26851551 26851681 3.950000e-41 180.0
30 TraesCS7B01G323200 chr5D 94.017 117 7 0 4319 4435 352456399 352456283 1.420000e-40 178.0
31 TraesCS7B01G323200 chr1B 91.200 125 11 0 4311 4435 67115759 67115883 2.380000e-38 171.0
32 TraesCS7B01G323200 chr3D 90.000 130 10 3 4314 4442 378244639 378244512 1.110000e-36 165.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G323200 chr7B 573923348 573928309 4961 False 9164.0000 9164 100.0000 1 4962 1 chr7B.!!$F3 4961
1 TraesCS7B01G323200 chr7D 533758276 533762663 4387 False 3228.7000 6388 96.9490 1 4301 2 chr7D.!!$F2 4300
2 TraesCS7B01G323200 chr7A 613177156 613182413 5257 False 743.6875 1925 91.4345 1 4961 8 chr7A.!!$F3 4960

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
114 115 0.321653 AAGAGGAAACATCGCGCCTT 60.322 50.0 0.00 0.00 0.00 4.35 F
1170 1201 0.392998 ATGACGGCGCCTTCAAGATT 60.393 50.0 35.53 19.13 0.00 2.40 F
1552 1606 0.465460 GCCGTCCCTGCCATTGATAA 60.465 55.0 0.00 0.00 0.00 1.75 F
2323 2384 0.179081 CTCTTGGGGTAGCCGCTAAC 60.179 60.0 6.93 6.93 37.37 2.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1513 1567 0.454600 CACATGACATGAGCAAGGCC 59.545 55.000 22.19 0.0 0.00 5.19 R
2014 2075 1.066573 CAGAACCAAGAGGAGCGATGT 60.067 52.381 0.00 0.0 38.69 3.06 R
3332 4066 1.767681 TGCTTTGCCTGATTGGGTTTT 59.232 42.857 0.00 0.0 36.00 2.43 R
4316 5211 0.032813 TTCCGGACGGAGGGAGTATT 60.033 55.000 13.64 0.0 46.06 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 113 1.425428 CAAGAGGAAACATCGCGCC 59.575 57.895 0.00 0.00 0.00 6.53
114 115 0.321653 AAGAGGAAACATCGCGCCTT 60.322 50.000 0.00 0.00 0.00 4.35
259 260 3.128242 CGATGCAAAAGAAGAGAAGGCAT 59.872 43.478 0.00 0.00 42.59 4.40
275 276 2.680352 ATCGGAGGGACAGCACGT 60.680 61.111 0.00 0.00 0.00 4.49
276 277 2.711922 ATCGGAGGGACAGCACGTC 61.712 63.158 0.00 0.00 44.57 4.34
277 278 4.778415 CGGAGGGACAGCACGTCG 62.778 72.222 0.00 0.00 46.42 5.12
290 294 4.509756 CGTCGTCGTCCTCCTCTA 57.490 61.111 0.00 0.00 0.00 2.43
483 487 1.323412 GAGCGCCCTCTCAAGAGATA 58.677 55.000 2.29 0.00 44.74 1.98
490 494 4.322273 CGCCCTCTCAAGAGATATATTGCA 60.322 45.833 8.62 0.00 44.74 4.08
540 544 7.519008 CGCTAGATGATTTCCTGTTATTGTTCC 60.519 40.741 0.00 0.00 0.00 3.62
559 563 2.313945 TCCCCCTGTGCTAAGTAGTACT 59.686 50.000 0.00 0.00 39.30 2.73
621 626 7.495934 TGCTTGAAGCTATAGATTGTTTCCTAC 59.504 37.037 18.94 0.00 42.97 3.18
702 708 0.734889 GTTGTGCTTGACTGCTGTGT 59.265 50.000 0.00 0.00 0.00 3.72
764 770 4.415224 TGACCTTACTTACTCCCTCCTT 57.585 45.455 0.00 0.00 0.00 3.36
787 793 4.201960 TGCCGAATTATAGCGCATTTTTCA 60.202 37.500 11.47 0.00 0.00 2.69
792 799 7.840797 CCGAATTATAGCGCATTTTTCAAAAAG 59.159 33.333 11.47 0.00 0.00 2.27
793 800 7.840797 CGAATTATAGCGCATTTTTCAAAAAGG 59.159 33.333 11.47 2.82 0.00 3.11
815 822 6.196434 AGGGGTCAAACTTTGTAAACCTTAA 58.804 36.000 9.57 0.00 0.00 1.85
817 824 6.982141 GGGGTCAAACTTTGTAAACCTTAAAG 59.018 38.462 9.57 0.00 37.42 1.85
818 825 7.364056 GGGGTCAAACTTTGTAAACCTTAAAGT 60.364 37.037 9.57 0.00 44.09 2.66
849 862 9.988350 GGACAATTATCAACACTTACAATACAG 57.012 33.333 0.00 0.00 0.00 2.74
863 876 9.243105 ACTTACAATACAGAATAAGTGCCATTT 57.757 29.630 0.00 0.00 36.69 2.32
879 892 7.658261 AGTGCCATTTGATTCATCATAATGAG 58.342 34.615 17.39 12.20 42.72 2.90
881 894 6.041069 TGCCATTTGATTCATCATAATGAGCA 59.959 34.615 19.61 19.61 42.72 4.26
882 895 6.365247 GCCATTTGATTCATCATAATGAGCAC 59.635 38.462 17.39 0.00 42.72 4.40
1041 1072 1.751162 CGGTCTCCTCTCGCTCCTT 60.751 63.158 0.00 0.00 0.00 3.36
1084 1115 4.761058 TCCTCCGCTTCTCCGCCT 62.761 66.667 0.00 0.00 0.00 5.52
1092 1123 1.222936 CTTCTCCGCCTTGCTGGAT 59.777 57.895 0.49 0.00 38.35 3.41
1140 1171 4.741239 TCCCCTCCACTGCCCCTC 62.741 72.222 0.00 0.00 0.00 4.30
1170 1201 0.392998 ATGACGGCGCCTTCAAGATT 60.393 50.000 35.53 19.13 0.00 2.40
1192 1223 1.377725 CAGGTTGGTAGCTGGCTGG 60.378 63.158 5.25 0.00 44.30 4.85
1370 1421 2.895865 CTGCGCAGGCTCATCCAG 60.896 66.667 29.88 0.00 40.82 3.86
1446 1500 1.133407 CGCGGCTTCTCTTCTCTTACT 59.867 52.381 0.00 0.00 0.00 2.24
1550 1604 2.124151 GCCGTCCCTGCCATTGAT 60.124 61.111 0.00 0.00 0.00 2.57
1551 1605 1.148273 GCCGTCCCTGCCATTGATA 59.852 57.895 0.00 0.00 0.00 2.15
1552 1606 0.465460 GCCGTCCCTGCCATTGATAA 60.465 55.000 0.00 0.00 0.00 1.75
1553 1607 1.597742 CCGTCCCTGCCATTGATAAG 58.402 55.000 0.00 0.00 0.00 1.73
1710 1768 7.483059 GCTTGTAAGTTGACTTTATGAATGCTC 59.517 37.037 1.20 0.00 37.40 4.26
1893 1952 2.096069 CCAAGCAATGTGAACTCGTCAG 60.096 50.000 0.00 0.00 36.74 3.51
1934 1995 4.307032 AACACTGGATGGAGCTAATGTT 57.693 40.909 0.00 0.00 0.00 2.71
1949 2010 7.650104 GGAGCTAATGTTAGAGTACTAAGCTTG 59.350 40.741 9.86 1.57 38.97 4.01
2144 2205 7.798596 AGCAGTCAATAGTAGAATTTGGATG 57.201 36.000 0.00 0.00 0.00 3.51
2190 2251 4.406003 TGAGTAATGTTCCCTCTTAGGCTC 59.594 45.833 0.00 0.00 32.73 4.70
2197 2258 2.672098 TCCCTCTTAGGCTCTTAGCTG 58.328 52.381 0.00 0.00 41.99 4.24
2220 2281 7.379059 TGTAACAGAATATGGATGATCCTGT 57.621 36.000 13.44 4.51 37.46 4.00
2300 2361 8.403236 ACTACAAAACAATCTAAAACAGTCCAC 58.597 33.333 0.00 0.00 0.00 4.02
2301 2362 6.569780 ACAAAACAATCTAAAACAGTCCACC 58.430 36.000 0.00 0.00 0.00 4.61
2323 2384 0.179081 CTCTTGGGGTAGCCGCTAAC 60.179 60.000 6.93 6.93 37.37 2.34
2369 2444 8.697067 CGAGTAAATAGTTATTGACCATAACCG 58.303 37.037 5.94 0.00 46.13 4.44
2377 2452 1.448985 TGACCATAACCGCTGCTTTC 58.551 50.000 0.00 0.00 0.00 2.62
2378 2453 1.003118 TGACCATAACCGCTGCTTTCT 59.997 47.619 0.00 0.00 0.00 2.52
2401 2476 0.689080 TCCATCAGCCCCTCTCTGAC 60.689 60.000 0.00 0.00 42.63 3.51
2712 3033 7.453393 TCTTGTCTTTGATGGATTACTCAGTT 58.547 34.615 0.00 0.00 0.00 3.16
2790 3519 3.232662 CATACATGGGCCATTTGGATCA 58.767 45.455 18.46 0.00 37.39 2.92
2803 3532 2.512692 TGGATCAGGGTTGGTCAATG 57.487 50.000 0.00 0.00 36.09 2.82
2949 3678 8.313944 TCCAGGTAGTCATGCTAAATACTAAA 57.686 34.615 0.00 0.00 0.00 1.85
2971 3700 7.396540 AAATTGATCACAGTACCAAAGATCC 57.603 36.000 0.00 0.00 35.42 3.36
3152 3886 7.995463 TTGAACTAAATTTCTTTTTGACCCG 57.005 32.000 0.00 0.00 0.00 5.28
3158 3892 6.399639 AAATTTCTTTTTGACCCGAAGCTA 57.600 33.333 0.00 0.00 0.00 3.32
3159 3893 6.590234 AATTTCTTTTTGACCCGAAGCTAT 57.410 33.333 0.00 0.00 0.00 2.97
3177 3911 8.554528 CGAAGCTATGATAATTTGTTCTCACAT 58.445 33.333 0.00 0.00 31.06 3.21
3294 4028 3.890756 ACAACAACAGCATCATTGGAGAA 59.109 39.130 0.00 0.00 0.00 2.87
3327 4061 9.790344 ATGATTCTCATCCAAAACCTATCTAAG 57.210 33.333 0.00 0.00 29.59 2.18
3570 4305 2.649312 ACATCCCAAATCCAGAAGTCCA 59.351 45.455 0.00 0.00 0.00 4.02
3604 4339 6.592994 GGTACACAGATTTTAAGGGTGAGTAC 59.407 42.308 0.00 0.00 35.63 2.73
3838 4573 2.093764 ACTCAAGAAAGGGCAGAGATCG 60.094 50.000 0.00 0.00 0.00 3.69
4235 4970 8.073467 TGTGTATGGATTGACTGTTATCTGTA 57.927 34.615 4.55 0.00 0.00 2.74
4326 5221 7.520451 AAAAACACCTGTTTAATACTCCCTC 57.480 36.000 3.87 0.00 46.47 4.30
4327 5222 4.838904 ACACCTGTTTAATACTCCCTCC 57.161 45.455 0.00 0.00 0.00 4.30
4328 5223 3.197116 ACACCTGTTTAATACTCCCTCCG 59.803 47.826 0.00 0.00 0.00 4.63
4329 5224 3.197116 CACCTGTTTAATACTCCCTCCGT 59.803 47.826 0.00 0.00 0.00 4.69
4330 5225 3.450096 ACCTGTTTAATACTCCCTCCGTC 59.550 47.826 0.00 0.00 0.00 4.79
4331 5226 3.181468 CCTGTTTAATACTCCCTCCGTCC 60.181 52.174 0.00 0.00 0.00 4.79
4332 5227 2.428171 TGTTTAATACTCCCTCCGTCCG 59.572 50.000 0.00 0.00 0.00 4.79
4333 5228 1.696063 TTAATACTCCCTCCGTCCGG 58.304 55.000 0.00 0.00 0.00 5.14
4334 5229 0.846015 TAATACTCCCTCCGTCCGGA 59.154 55.000 0.00 0.00 42.90 5.14
4335 5230 0.032813 AATACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
4336 5231 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
4337 5232 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
4338 5233 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
4339 5234 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
4340 5235 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
4341 5236 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
4342 5237 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4343 5238 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4344 5239 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4345 5240 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
4346 5241 1.403249 CCGTCCGGAAATACTTGTCGT 60.403 52.381 5.23 0.00 37.50 4.34
4347 5242 1.652124 CGTCCGGAAATACTTGTCGTG 59.348 52.381 5.23 0.00 0.00 4.35
4348 5243 1.997606 GTCCGGAAATACTTGTCGTGG 59.002 52.381 5.23 0.00 0.00 4.94
4349 5244 1.894466 TCCGGAAATACTTGTCGTGGA 59.106 47.619 0.00 0.00 0.00 4.02
4350 5245 2.299582 TCCGGAAATACTTGTCGTGGAA 59.700 45.455 0.00 0.00 0.00 3.53
4351 5246 3.068560 CCGGAAATACTTGTCGTGGAAA 58.931 45.455 0.00 0.00 0.00 3.13
4352 5247 3.687698 CCGGAAATACTTGTCGTGGAAAT 59.312 43.478 0.00 0.00 0.00 2.17
4353 5248 4.436852 CCGGAAATACTTGTCGTGGAAATG 60.437 45.833 0.00 0.00 0.00 2.32
4354 5249 4.436852 CGGAAATACTTGTCGTGGAAATGG 60.437 45.833 0.00 0.00 0.00 3.16
4355 5250 4.698304 GGAAATACTTGTCGTGGAAATGGA 59.302 41.667 0.00 0.00 0.00 3.41
4356 5251 5.357032 GGAAATACTTGTCGTGGAAATGGAT 59.643 40.000 0.00 0.00 0.00 3.41
4357 5252 6.540914 GGAAATACTTGTCGTGGAAATGGATA 59.459 38.462 0.00 0.00 0.00 2.59
4358 5253 7.066525 GGAAATACTTGTCGTGGAAATGGATAA 59.933 37.037 0.00 0.00 0.00 1.75
4359 5254 7.931578 AATACTTGTCGTGGAAATGGATAAA 57.068 32.000 0.00 0.00 0.00 1.40
4360 5255 7.931578 ATACTTGTCGTGGAAATGGATAAAA 57.068 32.000 0.00 0.00 0.00 1.52
4361 5256 6.642707 ACTTGTCGTGGAAATGGATAAAAA 57.357 33.333 0.00 0.00 0.00 1.94
4362 5257 7.227049 ACTTGTCGTGGAAATGGATAAAAAT 57.773 32.000 0.00 0.00 0.00 1.82
4363 5258 8.343168 ACTTGTCGTGGAAATGGATAAAAATA 57.657 30.769 0.00 0.00 0.00 1.40
4364 5259 8.458843 ACTTGTCGTGGAAATGGATAAAAATAG 58.541 33.333 0.00 0.00 0.00 1.73
4365 5260 8.568676 TTGTCGTGGAAATGGATAAAAATAGA 57.431 30.769 0.00 0.00 0.00 1.98
4366 5261 8.746052 TGTCGTGGAAATGGATAAAAATAGAT 57.254 30.769 0.00 0.00 0.00 1.98
4367 5262 8.620416 TGTCGTGGAAATGGATAAAAATAGATG 58.380 33.333 0.00 0.00 0.00 2.90
4368 5263 8.621286 GTCGTGGAAATGGATAAAAATAGATGT 58.379 33.333 0.00 0.00 0.00 3.06
4369 5264 9.839817 TCGTGGAAATGGATAAAAATAGATGTA 57.160 29.630 0.00 0.00 0.00 2.29
4410 5305 9.046296 ACATCTAAATACATCCATTTCTTCGAC 57.954 33.333 0.00 0.00 30.84 4.20
4411 5306 9.045223 CATCTAAATACATCCATTTCTTCGACA 57.955 33.333 0.00 0.00 30.84 4.35
4412 5307 9.613428 ATCTAAATACATCCATTTCTTCGACAA 57.387 29.630 0.00 0.00 30.84 3.18
4413 5308 9.098355 TCTAAATACATCCATTTCTTCGACAAG 57.902 33.333 0.00 0.00 30.84 3.16
4414 5309 7.687941 AAATACATCCATTTCTTCGACAAGT 57.312 32.000 0.00 0.00 0.00 3.16
4415 5310 8.786826 AAATACATCCATTTCTTCGACAAGTA 57.213 30.769 0.00 0.00 0.00 2.24
4416 5311 8.964476 AATACATCCATTTCTTCGACAAGTAT 57.036 30.769 0.00 0.00 0.00 2.12
4417 5312 8.964476 ATACATCCATTTCTTCGACAAGTATT 57.036 30.769 0.00 0.00 0.00 1.89
4418 5313 7.687941 ACATCCATTTCTTCGACAAGTATTT 57.312 32.000 0.00 0.00 0.00 1.40
4419 5314 7.752695 ACATCCATTTCTTCGACAAGTATTTC 58.247 34.615 0.00 0.00 0.00 2.17
4420 5315 6.737254 TCCATTTCTTCGACAAGTATTTCC 57.263 37.500 0.00 0.00 0.00 3.13
4421 5316 5.350365 TCCATTTCTTCGACAAGTATTTCCG 59.650 40.000 0.00 0.00 0.00 4.30
4422 5317 5.447279 CCATTTCTTCGACAAGTATTTCCGG 60.447 44.000 0.00 0.00 0.00 5.14
4423 5318 4.524316 TTCTTCGACAAGTATTTCCGGA 57.476 40.909 0.00 0.00 0.00 5.14
4424 5319 3.841643 TCTTCGACAAGTATTTCCGGAC 58.158 45.455 1.83 0.00 0.00 4.79
4425 5320 3.256383 TCTTCGACAAGTATTTCCGGACA 59.744 43.478 1.83 0.00 0.00 4.02
4426 5321 3.226346 TCGACAAGTATTTCCGGACAG 57.774 47.619 1.83 0.00 0.00 3.51
4427 5322 2.821378 TCGACAAGTATTTCCGGACAGA 59.179 45.455 1.83 0.00 0.00 3.41
4428 5323 3.119602 TCGACAAGTATTTCCGGACAGAG 60.120 47.826 1.83 0.00 0.00 3.35
4429 5324 3.522553 GACAAGTATTTCCGGACAGAGG 58.477 50.000 1.83 0.00 0.00 3.69
4430 5325 2.236395 ACAAGTATTTCCGGACAGAGGG 59.764 50.000 1.83 0.00 0.00 4.30
4435 5330 2.314071 TTTCCGGACAGAGGGAGTAA 57.686 50.000 1.83 0.00 33.01 2.24
4464 5359 7.882271 AGAAAGAAAGCTGGGCATCTTATATAG 59.118 37.037 9.68 0.00 36.49 1.31
4465 5360 6.694445 AGAAAGCTGGGCATCTTATATAGT 57.306 37.500 0.00 0.00 0.00 2.12
4466 5361 6.471146 AGAAAGCTGGGCATCTTATATAGTG 58.529 40.000 0.00 0.00 0.00 2.74
4467 5362 5.832539 AAGCTGGGCATCTTATATAGTGT 57.167 39.130 0.00 0.00 0.00 3.55
4469 5364 6.935240 AGCTGGGCATCTTATATAGTGTTA 57.065 37.500 0.00 0.00 0.00 2.41
4471 5366 7.745717 AGCTGGGCATCTTATATAGTGTTAAA 58.254 34.615 0.00 0.00 0.00 1.52
4473 5368 9.014297 GCTGGGCATCTTATATAGTGTTAAATT 57.986 33.333 0.00 0.00 0.00 1.82
4504 5399 2.436109 GGCTCTTGTGGCCCTTCA 59.564 61.111 0.00 0.00 43.49 3.02
4515 5410 2.620585 GTGGCCCTTCATTCTATCAAGC 59.379 50.000 0.00 0.00 0.00 4.01
4526 5421 8.585471 TTCATTCTATCAAGCAGGAAAGAAAT 57.415 30.769 0.00 0.00 0.00 2.17
4593 5488 8.738645 ATCCATAAAGTTTTCTGATGTACTCC 57.261 34.615 0.00 0.00 0.00 3.85
4594 5489 7.110155 TCCATAAAGTTTTCTGATGTACTCCC 58.890 38.462 0.00 0.00 0.00 4.30
4595 5490 7.037586 TCCATAAAGTTTTCTGATGTACTCCCT 60.038 37.037 0.00 0.00 0.00 4.20
4596 5491 7.281100 CCATAAAGTTTTCTGATGTACTCCCTC 59.719 40.741 0.00 0.00 0.00 4.30
4597 5492 4.828072 AGTTTTCTGATGTACTCCCTCC 57.172 45.455 0.00 0.00 0.00 4.30
4598 5493 3.195825 AGTTTTCTGATGTACTCCCTCCG 59.804 47.826 0.00 0.00 0.00 4.63
4599 5494 2.526888 TTCTGATGTACTCCCTCCGT 57.473 50.000 0.00 0.00 0.00 4.69
4600 5495 2.526888 TCTGATGTACTCCCTCCGTT 57.473 50.000 0.00 0.00 0.00 4.44
4601 5496 2.376109 TCTGATGTACTCCCTCCGTTC 58.624 52.381 0.00 0.00 0.00 3.95
4602 5497 1.065701 CTGATGTACTCCCTCCGTTCG 59.934 57.143 0.00 0.00 0.00 3.95
4603 5498 0.384669 GATGTACTCCCTCCGTTCGG 59.615 60.000 4.74 4.74 0.00 4.30
4604 5499 0.033796 ATGTACTCCCTCCGTTCGGA 60.034 55.000 13.34 13.34 0.00 4.55
4605 5500 0.251297 TGTACTCCCTCCGTTCGGAA 60.251 55.000 14.79 0.04 33.41 4.30
4606 5501 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
4607 5502 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
4608 5503 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
4609 5504 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
4610 5505 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
4611 5506 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
4612 5507 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
4613 5508 1.664151 CCTCCGTTCGGAATTACTTGC 59.336 52.381 14.79 0.00 33.41 4.01
4614 5509 1.664151 CTCCGTTCGGAATTACTTGCC 59.336 52.381 14.79 0.00 33.41 4.52
4615 5510 0.372334 CCGTTCGGAATTACTTGCCG 59.628 55.000 5.19 0.00 46.08 5.69
4616 5511 0.247537 CGTTCGGAATTACTTGCCGC 60.248 55.000 0.00 0.00 44.45 6.53
4617 5512 0.800012 GTTCGGAATTACTTGCCGCA 59.200 50.000 0.00 0.00 44.45 5.69
4618 5513 1.198178 GTTCGGAATTACTTGCCGCAA 59.802 47.619 5.52 5.52 44.45 4.85
4619 5514 1.524848 TCGGAATTACTTGCCGCAAA 58.475 45.000 7.33 0.00 44.45 3.68
4620 5515 1.880675 TCGGAATTACTTGCCGCAAAA 59.119 42.857 7.33 0.00 44.45 2.44
4621 5516 2.293677 TCGGAATTACTTGCCGCAAAAA 59.706 40.909 7.33 5.23 44.45 1.94
4622 5517 3.057174 TCGGAATTACTTGCCGCAAAAAT 60.057 39.130 7.33 7.31 44.45 1.82
4623 5518 3.060628 CGGAATTACTTGCCGCAAAAATG 59.939 43.478 7.33 0.00 38.46 2.32
4624 5519 3.370672 GGAATTACTTGCCGCAAAAATGG 59.629 43.478 7.33 0.00 0.00 3.16
4625 5520 3.951775 ATTACTTGCCGCAAAAATGGA 57.048 38.095 7.33 0.00 0.00 3.41
4626 5521 3.951775 TTACTTGCCGCAAAAATGGAT 57.048 38.095 7.33 0.00 0.00 3.41
4627 5522 2.083167 ACTTGCCGCAAAAATGGATG 57.917 45.000 7.33 0.00 0.00 3.51
4628 5523 1.344114 ACTTGCCGCAAAAATGGATGT 59.656 42.857 7.33 0.00 0.00 3.06
4629 5524 2.560542 ACTTGCCGCAAAAATGGATGTA 59.439 40.909 7.33 0.00 0.00 2.29
4630 5525 3.195396 ACTTGCCGCAAAAATGGATGTAT 59.805 39.130 7.33 0.00 0.00 2.29
4631 5526 3.435105 TGCCGCAAAAATGGATGTATC 57.565 42.857 0.00 0.00 0.00 2.24
4632 5527 3.023119 TGCCGCAAAAATGGATGTATCT 58.977 40.909 0.00 0.00 0.00 1.98
4633 5528 4.203226 TGCCGCAAAAATGGATGTATCTA 58.797 39.130 0.00 0.00 0.00 1.98
4634 5529 4.275689 TGCCGCAAAAATGGATGTATCTAG 59.724 41.667 0.00 0.00 0.00 2.43
4635 5530 4.515191 GCCGCAAAAATGGATGTATCTAGA 59.485 41.667 0.00 0.00 0.00 2.43
4636 5531 5.560953 GCCGCAAAAATGGATGTATCTAGAC 60.561 44.000 0.00 0.00 0.00 2.59
4637 5532 5.333339 CCGCAAAAATGGATGTATCTAGACG 60.333 44.000 0.00 0.00 0.00 4.18
4638 5533 5.234329 CGCAAAAATGGATGTATCTAGACGT 59.766 40.000 0.00 0.00 0.00 4.34
4639 5534 6.419710 CGCAAAAATGGATGTATCTAGACGTA 59.580 38.462 0.00 0.00 0.00 3.57
4640 5535 7.116376 CGCAAAAATGGATGTATCTAGACGTAT 59.884 37.037 0.00 0.00 0.00 3.06
4641 5536 8.774586 GCAAAAATGGATGTATCTAGACGTATT 58.225 33.333 0.00 0.00 0.00 1.89
4671 5566 9.809096 GTTCTAGATACATCAATTTCTGAGACA 57.191 33.333 0.00 0.00 37.52 3.41
4674 5569 9.814899 CTAGATACATCAATTTCTGAGACAAGT 57.185 33.333 0.00 0.00 37.52 3.16
4680 5575 8.734386 ACATCAATTTCTGAGACAAGTAATTCC 58.266 33.333 0.00 0.00 37.52 3.01
4681 5576 7.364522 TCAATTTCTGAGACAAGTAATTCCG 57.635 36.000 0.00 0.00 28.19 4.30
4682 5577 7.158697 TCAATTTCTGAGACAAGTAATTCCGA 58.841 34.615 0.00 0.00 28.19 4.55
4683 5578 7.659799 TCAATTTCTGAGACAAGTAATTCCGAA 59.340 33.333 0.00 0.00 28.19 4.30
4684 5579 6.780706 TTTCTGAGACAAGTAATTCCGAAC 57.219 37.500 0.00 0.00 0.00 3.95
4685 5580 4.482386 TCTGAGACAAGTAATTCCGAACG 58.518 43.478 0.00 0.00 0.00 3.95
4686 5581 3.581755 TGAGACAAGTAATTCCGAACGG 58.418 45.455 6.94 6.94 0.00 4.44
4687 5582 3.256383 TGAGACAAGTAATTCCGAACGGA 59.744 43.478 12.04 12.04 43.52 4.69
4688 5583 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
4689 5584 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
4690 5585 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
4691 5586 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
4692 5587 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
4693 5588 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
4694 5589 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
4695 5590 1.109609 ATTCCGAACGGAGGGAGTAC 58.890 55.000 15.34 0.00 46.06 2.73
4760 5655 8.086522 CAGATATAGGCCTTCAATCATTTTTGG 58.913 37.037 12.58 0.00 0.00 3.28
4775 5670 1.398692 TTTGGACCACAACCTTGAGC 58.601 50.000 0.00 0.00 39.19 4.26
4793 5688 6.376581 CCTTGAGCTCTATCAAAATCAACCTT 59.623 38.462 16.19 0.00 38.66 3.50
4794 5689 7.554118 CCTTGAGCTCTATCAAAATCAACCTTA 59.446 37.037 16.19 0.00 38.66 2.69
4796 5691 8.268850 TGAGCTCTATCAAAATCAACCTTAAC 57.731 34.615 16.19 0.00 0.00 2.01
4817 5712 1.229209 TGCCCCTCTCTCTTCCGTT 60.229 57.895 0.00 0.00 0.00 4.44
4825 5720 6.224584 CCCCTCTCTCTTCCGTTATTTAATC 58.775 44.000 0.00 0.00 0.00 1.75
4850 5745 5.676532 TGCATTTCAAATTTGCTCAAAGG 57.323 34.783 13.54 11.28 37.28 3.11
4852 5747 5.821470 TGCATTTCAAATTTGCTCAAAGGAA 59.179 32.000 13.54 3.00 37.28 3.36
4854 5749 7.148120 TGCATTTCAAATTTGCTCAAAGGAAAA 60.148 29.630 13.54 5.92 38.98 2.29
4855 5750 7.701501 GCATTTCAAATTTGCTCAAAGGAAAAA 59.298 29.630 13.54 5.25 38.98 1.94
4881 5776 5.032170 AGGGCCATGAATTTTAAACCTGAT 58.968 37.500 6.18 0.00 0.00 2.90
4895 5790 8.964476 TTTAAACCTGATATCTGATTCCTGAC 57.036 34.615 10.93 0.00 0.00 3.51
4902 5797 6.351711 TGATATCTGATTCCTGACCAGTTTG 58.648 40.000 3.98 0.00 0.00 2.93
4904 5799 2.978978 TCTGATTCCTGACCAGTTTGGA 59.021 45.455 1.40 0.00 40.96 3.53
4908 5803 4.018141 TGATTCCTGACCAGTTTGGATCAT 60.018 41.667 1.40 0.00 40.96 2.45
4919 5814 0.926293 TTGGATCATCCCCTTCCACC 59.074 55.000 0.00 0.00 39.21 4.61
4925 5820 0.035056 CATCCCCTTCCACCTGACAC 60.035 60.000 0.00 0.00 0.00 3.67
4961 5856 8.464770 ACAAACCAATGTCGAATATGATTTTG 57.535 30.769 0.00 3.01 0.00 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 113 0.962489 AGTCGGAGTCAGACACCAAG 59.038 55.000 22.86 2.21 40.84 3.61
114 115 0.179001 TGAGTCGGAGTCAGACACCA 60.179 55.000 22.86 17.01 40.84 4.17
240 241 2.485426 CGATGCCTTCTCTTCTTTTGCA 59.515 45.455 0.00 0.00 0.00 4.08
244 245 2.093235 CCTCCGATGCCTTCTCTTCTTT 60.093 50.000 0.00 0.00 0.00 2.52
259 260 3.371063 GACGTGCTGTCCCTCCGA 61.371 66.667 0.00 0.00 42.04 4.55
290 294 2.291282 ACTCGGACTCAGATTCAGACCT 60.291 50.000 0.00 0.00 0.00 3.85
292 296 3.013921 AGACTCGGACTCAGATTCAGAC 58.986 50.000 0.61 0.00 0.00 3.51
433 437 1.370900 CACGGCTGCACTGAAAAGC 60.371 57.895 0.50 0.00 36.17 3.51
483 487 9.754382 GGAAATCAACTGATACATTTGCAATAT 57.246 29.630 0.00 0.00 33.73 1.28
490 494 7.530010 CGTTCAGGAAATCAACTGATACATTT 58.470 34.615 0.00 0.00 42.73 2.32
540 544 3.633065 GAGAGTACTACTTAGCACAGGGG 59.367 52.174 0.00 0.00 0.00 4.79
621 626 1.748122 GCTCACAGGCATCACAGGG 60.748 63.158 0.00 0.00 0.00 4.45
665 670 5.163683 GCACAACAAGCTTACAGATGATGAT 60.164 40.000 0.00 0.00 0.00 2.45
737 743 6.296259 GGAGGGAGTAAGTAAGGTCAAAATGA 60.296 42.308 0.00 0.00 0.00 2.57
764 770 3.980646 AAAATGCGCTATAATTCGGCA 57.019 38.095 9.73 0.00 38.09 5.69
787 793 6.013206 AGGTTTACAAAGTTTGACCCCTTTTT 60.013 34.615 22.23 0.27 0.00 1.94
792 799 6.468333 TTAAGGTTTACAAAGTTTGACCCC 57.532 37.500 22.23 14.39 0.00 4.95
793 800 7.549839 ACTTTAAGGTTTACAAAGTTTGACCC 58.450 34.615 22.23 14.08 38.94 4.46
815 822 7.739498 AGTGTTGATAATTGTCCGTAAACTT 57.261 32.000 0.00 0.00 0.00 2.66
817 824 8.497554 TGTAAGTGTTGATAATTGTCCGTAAAC 58.502 33.333 0.00 0.00 0.00 2.01
818 825 8.604640 TGTAAGTGTTGATAATTGTCCGTAAA 57.395 30.769 0.00 0.00 0.00 2.01
822 829 8.661257 TGTATTGTAAGTGTTGATAATTGTCCG 58.339 33.333 0.00 0.00 0.00 4.79
823 830 9.988350 CTGTATTGTAAGTGTTGATAATTGTCC 57.012 33.333 0.00 0.00 0.00 4.02
849 862 9.970395 TTATGATGAATCAAATGGCACTTATTC 57.030 29.630 0.00 0.00 40.69 1.75
853 866 8.014070 TCATTATGATGAATCAAATGGCACTT 57.986 30.769 18.00 0.00 39.29 3.16
863 876 7.967890 AATACGTGCTCATTATGATGAATCA 57.032 32.000 0.00 0.00 41.55 2.57
879 892 7.349711 ACAATACCGAATATGAAAATACGTGC 58.650 34.615 0.00 0.00 0.00 5.34
1041 1072 2.039624 GAGAGGAGGCAGGGGACA 59.960 66.667 0.00 0.00 0.00 4.02
1192 1223 4.200283 CAGGAGGGACGAGCGAGC 62.200 72.222 0.00 0.00 0.00 5.03
1201 1232 1.338136 GCGGAGGAAATCAGGAGGGA 61.338 60.000 0.00 0.00 0.00 4.20
1205 1245 1.907739 CCAGCGGAGGAAATCAGGA 59.092 57.895 0.00 0.00 0.00 3.86
1359 1410 3.160047 CTCCGCCTGGATGAGCCT 61.160 66.667 0.00 0.00 45.33 4.58
1471 1525 0.671251 GTGGAGTAGCGATCTCTGGG 59.329 60.000 0.00 0.00 33.06 4.45
1513 1567 0.454600 CACATGACATGAGCAAGGCC 59.545 55.000 22.19 0.00 0.00 5.19
1710 1768 1.811965 TGACATCTGAATGCAAACGGG 59.188 47.619 0.00 0.00 36.26 5.28
1907 1966 2.644798 AGCTCCATCCAGTGTTAAACCT 59.355 45.455 0.00 0.00 0.00 3.50
1934 1995 7.411486 AGAAGAATGCAAGCTTAGTACTCTA 57.589 36.000 0.00 0.00 0.00 2.43
1969 2030 9.787435 AGAGAGAACTCACTCGATATAGTTAAT 57.213 33.333 4.64 0.72 44.79 1.40
1970 2031 9.616156 AAGAGAGAACTCACTCGATATAGTTAA 57.384 33.333 4.64 0.00 44.79 2.01
1972 2033 7.554835 ACAAGAGAGAACTCACTCGATATAGTT 59.445 37.037 4.64 6.22 44.79 2.24
1973 2034 7.051623 ACAAGAGAGAACTCACTCGATATAGT 58.948 38.462 4.64 0.00 44.79 2.12
1974 2035 7.490962 ACAAGAGAGAACTCACTCGATATAG 57.509 40.000 4.64 0.00 44.79 1.31
1975 2036 8.994170 CATACAAGAGAGAACTCACTCGATATA 58.006 37.037 4.64 0.00 44.79 0.86
1976 2037 7.521423 GCATACAAGAGAGAACTCACTCGATAT 60.521 40.741 4.64 1.11 44.79 1.63
1977 2038 6.238511 GCATACAAGAGAGAACTCACTCGATA 60.239 42.308 4.64 0.00 44.79 2.92
1978 2039 5.449862 GCATACAAGAGAGAACTCACTCGAT 60.450 44.000 4.64 0.00 44.79 3.59
1979 2040 4.142578 GCATACAAGAGAGAACTCACTCGA 60.143 45.833 4.64 0.00 44.79 4.04
1980 2041 4.101942 GCATACAAGAGAGAACTCACTCG 58.898 47.826 4.64 0.00 44.79 4.18
2014 2075 1.066573 CAGAACCAAGAGGAGCGATGT 60.067 52.381 0.00 0.00 38.69 3.06
2065 2126 3.244875 TGCACCAATCACCTTACTGATGT 60.245 43.478 0.00 0.00 30.92 3.06
2144 2205 5.885230 TGTTCATGTTGAATGTGGATCTC 57.115 39.130 0.00 0.00 38.79 2.75
2190 2251 9.149225 GATCATCCATATTCTGTTACAGCTAAG 57.851 37.037 7.61 0.00 0.00 2.18
2197 2258 7.172190 CACACAGGATCATCCATATTCTGTTAC 59.828 40.741 6.42 0.00 39.61 2.50
2220 2281 1.178276 ACCGTTGGCTTTTGTTCACA 58.822 45.000 0.00 0.00 0.00 3.58
2285 2346 5.568620 AGAGTTGGTGGACTGTTTTAGAT 57.431 39.130 0.00 0.00 0.00 1.98
2286 2347 5.123227 CAAGAGTTGGTGGACTGTTTTAGA 58.877 41.667 0.00 0.00 31.51 2.10
2287 2348 4.275936 CCAAGAGTTGGTGGACTGTTTTAG 59.724 45.833 0.00 0.00 45.93 1.85
2288 2349 4.204012 CCAAGAGTTGGTGGACTGTTTTA 58.796 43.478 0.00 0.00 45.93 1.52
2289 2350 3.023832 CCAAGAGTTGGTGGACTGTTTT 58.976 45.455 0.00 0.00 45.93 2.43
2290 2351 2.654863 CCAAGAGTTGGTGGACTGTTT 58.345 47.619 0.00 0.00 45.93 2.83
2291 2352 2.348411 CCAAGAGTTGGTGGACTGTT 57.652 50.000 0.00 0.00 45.93 3.16
2301 2362 1.745489 GCGGCTACCCCAAGAGTTG 60.745 63.158 0.00 0.00 0.00 3.16
2323 2384 2.351060 CGCAGGCCATAACATGCTTATG 60.351 50.000 5.01 15.46 36.52 1.90
2335 2396 3.560636 AACTATTTACTCGCAGGCCAT 57.439 42.857 5.01 0.00 0.00 4.40
2369 2444 2.991866 GCTGATGGAAAAAGAAAGCAGC 59.008 45.455 0.00 0.00 40.34 5.25
2377 2452 2.025510 AGAGAGGGGCTGATGGAAAAAG 60.026 50.000 0.00 0.00 0.00 2.27
2378 2453 1.995542 AGAGAGGGGCTGATGGAAAAA 59.004 47.619 0.00 0.00 0.00 1.94
2790 3519 2.026822 CAGACTAGCATTGACCAACCCT 60.027 50.000 0.00 0.00 0.00 4.34
2803 3532 5.581479 GGAAGTAAAGGTTAAGCAGACTAGC 59.419 44.000 7.52 3.52 0.00 3.42
2949 3678 5.044919 TGGGATCTTTGGTACTGTGATCAAT 60.045 40.000 0.00 0.00 36.28 2.57
2971 3700 2.305928 TGGTGACACATTCCAAACTGG 58.694 47.619 8.08 0.00 34.91 4.00
3068 3799 8.909708 ATTGGTTACAAATATGTTCATCAACG 57.090 30.769 0.00 0.00 40.55 4.10
3152 3886 9.875675 GATGTGAGAACAAATTATCATAGCTTC 57.124 33.333 0.00 0.00 38.29 3.86
3210 3944 6.562825 GCATAGTTTTTCTTTGTGCTTTCTGC 60.563 38.462 0.00 0.00 43.25 4.26
3327 4061 5.277779 GCTTTGCCTGATTGGGTTTTAAAAC 60.278 40.000 20.58 20.58 38.17 2.43
3332 4066 1.767681 TGCTTTGCCTGATTGGGTTTT 59.232 42.857 0.00 0.00 36.00 2.43
3838 4573 2.876219 GACTCGACTCCCGTCCAC 59.124 66.667 0.00 0.00 39.75 4.02
4203 4938 7.581213 ACAGTCAATCCATACACAAGAAAAA 57.419 32.000 0.00 0.00 0.00 1.94
4261 4996 8.213679 AGGCATATGTTGTCTAATTCATACAGT 58.786 33.333 4.29 0.00 38.94 3.55
4306 5201 3.197116 CGGAGGGAGTATTAAACAGGTGT 59.803 47.826 0.00 0.00 0.00 4.16
4307 5202 3.197116 ACGGAGGGAGTATTAAACAGGTG 59.803 47.826 0.00 0.00 0.00 4.00
4310 5205 3.490419 CGGACGGAGGGAGTATTAAACAG 60.490 52.174 0.00 0.00 0.00 3.16
4311 5206 2.428171 CGGACGGAGGGAGTATTAAACA 59.572 50.000 0.00 0.00 0.00 2.83
4312 5207 2.223900 CCGGACGGAGGGAGTATTAAAC 60.224 54.545 4.40 0.00 37.50 2.01
4314 5209 1.215173 TCCGGACGGAGGGAGTATTAA 59.785 52.381 9.76 0.00 39.76 1.40
4316 5211 0.032813 TTCCGGACGGAGGGAGTATT 60.033 55.000 13.64 0.00 46.06 1.89
4317 5212 0.032813 TTTCCGGACGGAGGGAGTAT 60.033 55.000 13.64 0.00 46.06 2.12
4318 5213 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
4319 5214 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
4320 5215 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
4321 5216 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
4322 5217 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4323 5218 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4324 5219 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
4325 5220 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
4326 5221 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
4327 5222 1.652124 CACGACAAGTATTTCCGGACG 59.348 52.381 1.83 3.25 0.00 4.79
4328 5223 1.997606 CCACGACAAGTATTTCCGGAC 59.002 52.381 1.83 0.00 0.00 4.79
4329 5224 1.894466 TCCACGACAAGTATTTCCGGA 59.106 47.619 0.00 0.00 0.00 5.14
4330 5225 2.373540 TCCACGACAAGTATTTCCGG 57.626 50.000 0.00 0.00 0.00 5.14
4331 5226 4.436852 CCATTTCCACGACAAGTATTTCCG 60.437 45.833 0.00 0.00 0.00 4.30
4332 5227 4.698304 TCCATTTCCACGACAAGTATTTCC 59.302 41.667 0.00 0.00 0.00 3.13
4333 5228 5.873179 TCCATTTCCACGACAAGTATTTC 57.127 39.130 0.00 0.00 0.00 2.17
4334 5229 7.931578 TTATCCATTTCCACGACAAGTATTT 57.068 32.000 0.00 0.00 0.00 1.40
4335 5230 7.931578 TTTATCCATTTCCACGACAAGTATT 57.068 32.000 0.00 0.00 0.00 1.89
4336 5231 7.931578 TTTTATCCATTTCCACGACAAGTAT 57.068 32.000 0.00 0.00 0.00 2.12
4337 5232 7.747155 TTTTTATCCATTTCCACGACAAGTA 57.253 32.000 0.00 0.00 0.00 2.24
4338 5233 6.642707 TTTTTATCCATTTCCACGACAAGT 57.357 33.333 0.00 0.00 0.00 3.16
4339 5234 8.673711 TCTATTTTTATCCATTTCCACGACAAG 58.326 33.333 0.00 0.00 0.00 3.16
4340 5235 8.568676 TCTATTTTTATCCATTTCCACGACAA 57.431 30.769 0.00 0.00 0.00 3.18
4341 5236 8.620416 CATCTATTTTTATCCATTTCCACGACA 58.380 33.333 0.00 0.00 0.00 4.35
4342 5237 8.621286 ACATCTATTTTTATCCATTTCCACGAC 58.379 33.333 0.00 0.00 0.00 4.34
4343 5238 8.746052 ACATCTATTTTTATCCATTTCCACGA 57.254 30.769 0.00 0.00 0.00 4.35
4384 5279 9.046296 GTCGAAGAAATGGATGTATTTAGATGT 57.954 33.333 0.00 0.00 39.69 3.06
4385 5280 9.045223 TGTCGAAGAAATGGATGTATTTAGATG 57.955 33.333 0.00 0.00 39.69 2.90
4386 5281 9.613428 TTGTCGAAGAAATGGATGTATTTAGAT 57.387 29.630 0.00 0.00 39.69 1.98
4387 5282 9.098355 CTTGTCGAAGAAATGGATGTATTTAGA 57.902 33.333 0.00 0.00 39.69 2.10
4388 5283 8.883731 ACTTGTCGAAGAAATGGATGTATTTAG 58.116 33.333 0.00 0.00 39.69 1.85
4389 5284 8.786826 ACTTGTCGAAGAAATGGATGTATTTA 57.213 30.769 0.00 0.00 39.69 1.40
4390 5285 7.687941 ACTTGTCGAAGAAATGGATGTATTT 57.312 32.000 0.00 0.00 39.69 1.40
4391 5286 8.964476 ATACTTGTCGAAGAAATGGATGTATT 57.036 30.769 0.00 0.00 39.69 1.89
4392 5287 8.964476 AATACTTGTCGAAGAAATGGATGTAT 57.036 30.769 0.00 0.00 39.69 2.29
4393 5288 8.786826 AAATACTTGTCGAAGAAATGGATGTA 57.213 30.769 0.00 0.00 39.69 2.29
4394 5289 7.148239 GGAAATACTTGTCGAAGAAATGGATGT 60.148 37.037 0.00 0.00 39.69 3.06
4395 5290 7.189512 GGAAATACTTGTCGAAGAAATGGATG 58.810 38.462 0.00 0.00 39.69 3.51
4396 5291 6.037172 CGGAAATACTTGTCGAAGAAATGGAT 59.963 38.462 0.00 0.00 39.69 3.41
4397 5292 5.350365 CGGAAATACTTGTCGAAGAAATGGA 59.650 40.000 0.00 0.00 39.69 3.41
4398 5293 5.447279 CCGGAAATACTTGTCGAAGAAATGG 60.447 44.000 0.00 0.00 39.69 3.16
4399 5294 5.350365 TCCGGAAATACTTGTCGAAGAAATG 59.650 40.000 0.00 0.00 39.69 2.32
4400 5295 5.350640 GTCCGGAAATACTTGTCGAAGAAAT 59.649 40.000 5.23 0.00 39.69 2.17
4401 5296 4.687483 GTCCGGAAATACTTGTCGAAGAAA 59.313 41.667 5.23 0.00 39.69 2.52
4402 5297 4.240096 GTCCGGAAATACTTGTCGAAGAA 58.760 43.478 5.23 0.00 39.69 2.52
4403 5298 3.256383 TGTCCGGAAATACTTGTCGAAGA 59.744 43.478 5.23 0.00 32.98 2.87
4404 5299 3.581755 TGTCCGGAAATACTTGTCGAAG 58.418 45.455 5.23 0.00 35.07 3.79
4405 5300 3.256383 TCTGTCCGGAAATACTTGTCGAA 59.744 43.478 5.23 0.00 0.00 3.71
4406 5301 2.821378 TCTGTCCGGAAATACTTGTCGA 59.179 45.455 5.23 0.00 0.00 4.20
4407 5302 3.179830 CTCTGTCCGGAAATACTTGTCG 58.820 50.000 5.23 0.00 0.00 4.35
4408 5303 3.522553 CCTCTGTCCGGAAATACTTGTC 58.477 50.000 5.23 0.00 0.00 3.18
4409 5304 2.236395 CCCTCTGTCCGGAAATACTTGT 59.764 50.000 5.23 0.00 0.00 3.16
4410 5305 2.500098 TCCCTCTGTCCGGAAATACTTG 59.500 50.000 5.23 0.00 0.00 3.16
4411 5306 2.766828 CTCCCTCTGTCCGGAAATACTT 59.233 50.000 5.23 0.00 0.00 2.24
4412 5307 2.292323 ACTCCCTCTGTCCGGAAATACT 60.292 50.000 5.23 0.00 0.00 2.12
4413 5308 2.108970 ACTCCCTCTGTCCGGAAATAC 58.891 52.381 5.23 0.00 0.00 1.89
4414 5309 2.544844 ACTCCCTCTGTCCGGAAATA 57.455 50.000 5.23 0.00 0.00 1.40
4415 5310 2.544844 TACTCCCTCTGTCCGGAAAT 57.455 50.000 5.23 0.00 0.00 2.17
4416 5311 2.314071 TTACTCCCTCTGTCCGGAAA 57.686 50.000 5.23 0.00 0.00 3.13
4417 5312 2.314071 TTTACTCCCTCTGTCCGGAA 57.686 50.000 5.23 0.00 0.00 4.30
4418 5313 2.314071 TTTTACTCCCTCTGTCCGGA 57.686 50.000 0.00 0.00 0.00 5.14
4419 5314 2.565834 TCTTTTTACTCCCTCTGTCCGG 59.434 50.000 0.00 0.00 0.00 5.14
4420 5315 3.955650 TCTTTTTACTCCCTCTGTCCG 57.044 47.619 0.00 0.00 0.00 4.79
4421 5316 5.866207 TCTTTCTTTTTACTCCCTCTGTCC 58.134 41.667 0.00 0.00 0.00 4.02
4422 5317 7.520776 GCTTTCTTTCTTTTTACTCCCTCTGTC 60.521 40.741 0.00 0.00 0.00 3.51
4423 5318 6.263392 GCTTTCTTTCTTTTTACTCCCTCTGT 59.737 38.462 0.00 0.00 0.00 3.41
4424 5319 6.488344 AGCTTTCTTTCTTTTTACTCCCTCTG 59.512 38.462 0.00 0.00 0.00 3.35
4425 5320 6.488344 CAGCTTTCTTTCTTTTTACTCCCTCT 59.512 38.462 0.00 0.00 0.00 3.69
4426 5321 6.294231 CCAGCTTTCTTTCTTTTTACTCCCTC 60.294 42.308 0.00 0.00 0.00 4.30
4427 5322 5.536538 CCAGCTTTCTTTCTTTTTACTCCCT 59.463 40.000 0.00 0.00 0.00 4.20
4428 5323 5.279006 CCCAGCTTTCTTTCTTTTTACTCCC 60.279 44.000 0.00 0.00 0.00 4.30
4429 5324 5.773575 CCCAGCTTTCTTTCTTTTTACTCC 58.226 41.667 0.00 0.00 0.00 3.85
4430 5325 5.221244 TGCCCAGCTTTCTTTCTTTTTACTC 60.221 40.000 0.00 0.00 0.00 2.59
4435 5330 3.899980 AGATGCCCAGCTTTCTTTCTTTT 59.100 39.130 0.00 0.00 0.00 2.27
4469 5364 9.247861 ACAAGAGCCATCAAGTCTATTTAATTT 57.752 29.630 0.00 0.00 0.00 1.82
4471 5366 7.284034 CCACAAGAGCCATCAAGTCTATTTAAT 59.716 37.037 0.00 0.00 0.00 1.40
4473 5368 6.115446 CCACAAGAGCCATCAAGTCTATTTA 58.885 40.000 0.00 0.00 0.00 1.40
4474 5369 4.946157 CCACAAGAGCCATCAAGTCTATTT 59.054 41.667 0.00 0.00 0.00 1.40
4475 5370 4.521146 CCACAAGAGCCATCAAGTCTATT 58.479 43.478 0.00 0.00 0.00 1.73
4476 5371 3.683847 GCCACAAGAGCCATCAAGTCTAT 60.684 47.826 0.00 0.00 0.00 1.98
4477 5372 2.355108 GCCACAAGAGCCATCAAGTCTA 60.355 50.000 0.00 0.00 0.00 2.59
4478 5373 1.612726 GCCACAAGAGCCATCAAGTCT 60.613 52.381 0.00 0.00 0.00 3.24
4479 5374 0.807496 GCCACAAGAGCCATCAAGTC 59.193 55.000 0.00 0.00 0.00 3.01
4480 5375 2.952714 GCCACAAGAGCCATCAAGT 58.047 52.632 0.00 0.00 0.00 3.16
4488 5383 0.813821 GAATGAAGGGCCACAAGAGC 59.186 55.000 6.18 0.00 0.00 4.09
4489 5384 2.503895 AGAATGAAGGGCCACAAGAG 57.496 50.000 6.18 0.00 0.00 2.85
4490 5385 3.523157 TGATAGAATGAAGGGCCACAAGA 59.477 43.478 6.18 0.00 0.00 3.02
4491 5386 3.889815 TGATAGAATGAAGGGCCACAAG 58.110 45.455 6.18 0.00 0.00 3.16
4492 5387 4.272489 CTTGATAGAATGAAGGGCCACAA 58.728 43.478 6.18 0.00 0.00 3.33
4493 5388 3.889815 CTTGATAGAATGAAGGGCCACA 58.110 45.455 6.18 6.04 0.00 4.17
4494 5389 2.620585 GCTTGATAGAATGAAGGGCCAC 59.379 50.000 6.18 0.00 0.00 5.01
4504 5399 8.907885 GGTTATTTCTTTCCTGCTTGATAGAAT 58.092 33.333 8.76 4.51 34.00 2.40
4515 5410 7.396055 TGAATACCTTGGGTTATTTCTTTCCTG 59.604 37.037 0.00 0.00 37.09 3.86
4526 5421 8.423906 TTTTGCTTTATGAATACCTTGGGTTA 57.576 30.769 0.00 0.00 37.09 2.85
4554 5449 7.291411 ACTTTATGGATAGTTCATACTCGCT 57.709 36.000 0.00 0.00 35.78 4.93
4591 5486 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
4592 5487 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
4593 5488 1.664151 GCAAGTAATTCCGAACGGAGG 59.336 52.381 15.34 3.40 46.06 4.30
4594 5489 1.664151 GGCAAGTAATTCCGAACGGAG 59.336 52.381 15.34 4.35 46.06 4.63
4595 5490 1.729284 GGCAAGTAATTCCGAACGGA 58.271 50.000 12.04 12.04 43.52 4.69
4596 5491 0.372334 CGGCAAGTAATTCCGAACGG 59.628 55.000 6.94 6.94 45.53 4.44
4597 5492 0.247537 GCGGCAAGTAATTCCGAACG 60.248 55.000 14.89 0.00 45.53 3.95
4598 5493 0.800012 TGCGGCAAGTAATTCCGAAC 59.200 50.000 14.89 2.76 45.53 3.95
4599 5494 1.524848 TTGCGGCAAGTAATTCCGAA 58.475 45.000 12.11 4.66 45.53 4.30
4600 5495 1.524848 TTTGCGGCAAGTAATTCCGA 58.475 45.000 15.78 0.00 45.53 4.55
4601 5496 2.339728 TTTTGCGGCAAGTAATTCCG 57.660 45.000 15.78 8.71 45.46 4.30
4602 5497 3.370672 CCATTTTTGCGGCAAGTAATTCC 59.629 43.478 15.78 0.00 0.00 3.01
4603 5498 4.241681 TCCATTTTTGCGGCAAGTAATTC 58.758 39.130 15.78 0.00 0.00 2.17
4604 5499 4.264460 TCCATTTTTGCGGCAAGTAATT 57.736 36.364 15.78 2.48 0.00 1.40
4605 5500 3.951775 TCCATTTTTGCGGCAAGTAAT 57.048 38.095 15.78 15.44 0.00 1.89
4606 5501 3.006323 ACATCCATTTTTGCGGCAAGTAA 59.994 39.130 15.78 13.93 0.00 2.24
4607 5502 2.560542 ACATCCATTTTTGCGGCAAGTA 59.439 40.909 15.78 8.29 0.00 2.24
4608 5503 1.344114 ACATCCATTTTTGCGGCAAGT 59.656 42.857 15.78 4.90 0.00 3.16
4609 5504 2.083167 ACATCCATTTTTGCGGCAAG 57.917 45.000 15.78 4.06 0.00 4.01
4610 5505 3.446873 AGATACATCCATTTTTGCGGCAA 59.553 39.130 12.11 12.11 0.00 4.52
4611 5506 3.023119 AGATACATCCATTTTTGCGGCA 58.977 40.909 0.00 0.00 0.00 5.69
4612 5507 3.715628 AGATACATCCATTTTTGCGGC 57.284 42.857 0.00 0.00 0.00 6.53
4613 5508 5.333339 CGTCTAGATACATCCATTTTTGCGG 60.333 44.000 0.00 0.00 0.00 5.69
4614 5509 5.234329 ACGTCTAGATACATCCATTTTTGCG 59.766 40.000 0.00 0.00 0.00 4.85
4615 5510 6.604735 ACGTCTAGATACATCCATTTTTGC 57.395 37.500 0.00 0.00 0.00 3.68
4645 5540 9.809096 TGTCTCAGAAATTGATGTATCTAGAAC 57.191 33.333 0.00 0.00 34.68 3.01
4648 5543 9.814899 ACTTGTCTCAGAAATTGATGTATCTAG 57.185 33.333 0.00 0.00 34.68 2.43
4654 5549 8.734386 GGAATTACTTGTCTCAGAAATTGATGT 58.266 33.333 0.00 0.00 34.68 3.06
4655 5550 7.907045 CGGAATTACTTGTCTCAGAAATTGATG 59.093 37.037 0.00 0.00 34.68 3.07
4656 5551 7.824289 TCGGAATTACTTGTCTCAGAAATTGAT 59.176 33.333 0.00 0.00 34.68 2.57
4657 5552 7.158697 TCGGAATTACTTGTCTCAGAAATTGA 58.841 34.615 0.00 0.00 0.00 2.57
4658 5553 7.364522 TCGGAATTACTTGTCTCAGAAATTG 57.635 36.000 0.00 0.00 0.00 2.32
4659 5554 7.360101 CGTTCGGAATTACTTGTCTCAGAAATT 60.360 37.037 0.00 0.00 0.00 1.82
4660 5555 6.090898 CGTTCGGAATTACTTGTCTCAGAAAT 59.909 38.462 0.00 0.00 0.00 2.17
4661 5556 5.404366 CGTTCGGAATTACTTGTCTCAGAAA 59.596 40.000 0.00 0.00 0.00 2.52
4662 5557 4.921515 CGTTCGGAATTACTTGTCTCAGAA 59.078 41.667 0.00 0.00 0.00 3.02
4663 5558 4.482386 CGTTCGGAATTACTTGTCTCAGA 58.518 43.478 0.00 0.00 0.00 3.27
4664 5559 3.612860 CCGTTCGGAATTACTTGTCTCAG 59.387 47.826 5.19 0.00 0.00 3.35
4665 5560 3.256383 TCCGTTCGGAATTACTTGTCTCA 59.744 43.478 11.66 0.00 0.00 3.27
4666 5561 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
4667 5562 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
4668 5563 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
4669 5564 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
4670 5565 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
4671 5566 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
4672 5567 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
4673 5568 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
4674 5569 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
4675 5570 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
4676 5571 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
4677 5572 0.967380 GGTACTCCCTCCGTTCGGAA 60.967 60.000 14.79 0.04 33.41 4.30
4678 5573 1.379044 GGTACTCCCTCCGTTCGGA 60.379 63.158 13.34 13.34 0.00 4.55
4679 5574 1.252904 TTGGTACTCCCTCCGTTCGG 61.253 60.000 4.74 4.74 0.00 4.30
4680 5575 0.172803 CTTGGTACTCCCTCCGTTCG 59.827 60.000 0.00 0.00 0.00 3.95
4681 5576 0.535797 CCTTGGTACTCCCTCCGTTC 59.464 60.000 0.00 0.00 0.00 3.95
4682 5577 0.178912 ACCTTGGTACTCCCTCCGTT 60.179 55.000 0.00 0.00 0.00 4.44
4683 5578 0.706433 TACCTTGGTACTCCCTCCGT 59.294 55.000 0.00 0.00 0.00 4.69
4684 5579 2.083628 ATACCTTGGTACTCCCTCCG 57.916 55.000 1.13 0.00 0.00 4.63
4685 5580 3.113043 ACAATACCTTGGTACTCCCTCC 58.887 50.000 1.13 0.00 36.64 4.30
4686 5581 3.773119 TGACAATACCTTGGTACTCCCTC 59.227 47.826 1.13 0.00 36.64 4.30
4687 5582 3.798515 TGACAATACCTTGGTACTCCCT 58.201 45.455 1.13 0.00 36.64 4.20
4688 5583 4.259356 GTTGACAATACCTTGGTACTCCC 58.741 47.826 1.13 0.00 36.64 4.30
4689 5584 4.259356 GGTTGACAATACCTTGGTACTCC 58.741 47.826 1.13 0.00 36.64 3.85
4690 5585 3.930848 CGGTTGACAATACCTTGGTACTC 59.069 47.826 1.13 0.00 36.64 2.59
4691 5586 3.325716 ACGGTTGACAATACCTTGGTACT 59.674 43.478 1.13 0.00 36.64 2.73
4692 5587 3.667360 ACGGTTGACAATACCTTGGTAC 58.333 45.455 1.13 0.00 36.64 3.34
4693 5588 3.579586 AGACGGTTGACAATACCTTGGTA 59.420 43.478 1.65 1.65 36.64 3.25
4694 5589 2.370849 AGACGGTTGACAATACCTTGGT 59.629 45.455 0.00 0.00 36.64 3.67
4695 5590 2.742053 CAGACGGTTGACAATACCTTGG 59.258 50.000 0.00 0.00 36.64 3.61
4760 5655 3.055819 TGATAGAGCTCAAGGTTGTGGTC 60.056 47.826 17.77 13.48 44.74 4.02
4775 5670 7.464358 CACGGTTAAGGTTGATTTTGATAGAG 58.536 38.462 0.00 0.00 0.00 2.43
4793 5688 0.252103 AAGAGAGAGGGGCACGGTTA 60.252 55.000 0.00 0.00 0.00 2.85
4794 5689 1.536662 AAGAGAGAGGGGCACGGTT 60.537 57.895 0.00 0.00 0.00 4.44
4796 5691 2.726351 GGAAGAGAGAGGGGCACGG 61.726 68.421 0.00 0.00 0.00 4.94
4825 5720 5.614923 TTGAGCAAATTTGAAATGCATGG 57.385 34.783 22.31 0.00 42.45 3.66
4854 5749 6.489700 CAGGTTTAAAATTCATGGCCCTTTTT 59.510 34.615 0.00 2.02 0.00 1.94
4855 5750 6.003326 CAGGTTTAAAATTCATGGCCCTTTT 58.997 36.000 0.00 1.47 0.00 2.27
4873 5768 5.429762 TGGTCAGGAATCAGATATCAGGTTT 59.570 40.000 5.32 0.00 0.00 3.27
4881 5776 4.782691 TCCAAACTGGTCAGGAATCAGATA 59.217 41.667 2.87 0.00 39.03 1.98
4895 5790 2.659428 GAAGGGGATGATCCAAACTGG 58.341 52.381 14.36 0.00 38.64 4.00
4902 5797 0.475906 CAGGTGGAAGGGGATGATCC 59.524 60.000 1.94 1.94 35.23 3.36
4904 5799 1.216990 GTCAGGTGGAAGGGGATGAT 58.783 55.000 0.00 0.00 0.00 2.45
4908 5803 1.846124 GGTGTCAGGTGGAAGGGGA 60.846 63.158 0.00 0.00 0.00 4.81
4919 5814 5.043248 GGTTTGTTTCAAAGATGGTGTCAG 58.957 41.667 0.00 0.00 0.00 3.51
4925 5820 5.175491 CGACATTGGTTTGTTTCAAAGATGG 59.825 40.000 12.85 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.