Multiple sequence alignment - TraesCS7B01G323100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G323100 chr7B 100.000 2804 0 0 1 2804 573921927 573924730 0.000000e+00 5179.0
1 TraesCS7B01G323100 chr7B 100.000 33 0 0 12 44 573920369 573920337 8.390000e-06 62.1
2 TraesCS7B01G323100 chr7D 92.033 2824 147 32 46 2804 533756873 533759683 0.000000e+00 3897.0
3 TraesCS7B01G323100 chr7A 91.936 2319 137 30 526 2804 613176241 613178549 0.000000e+00 3201.0
4 TraesCS7B01G323100 chr7A 93.349 436 22 2 43 471 613175805 613176240 3.050000e-179 638.0
5 TraesCS7B01G323100 chr7A 97.727 44 1 0 1 44 692931363 692931320 3.000000e-10 76.8
6 TraesCS7B01G323100 chr5A 82.614 857 112 20 972 1816 18389855 18389024 0.000000e+00 723.0
7 TraesCS7B01G323100 chr5D 85.849 530 66 7 911 1435 26531865 26532390 3.160000e-154 555.0
8 TraesCS7B01G323100 chrUn 83.452 423 55 10 2385 2801 122475476 122475889 2.040000e-101 379.0
9 TraesCS7B01G323100 chr2D 75.870 460 97 11 1047 1499 94328855 94328403 3.640000e-54 222.0
10 TraesCS7B01G323100 chr2B 75.055 457 106 6 1047 1499 146451971 146451519 3.660000e-49 206.0
11 TraesCS7B01G323100 chr2B 100.000 29 0 0 808 836 383252547 383252519 1.000000e-03 54.7
12 TraesCS7B01G323100 chr3A 100.000 42 0 0 1 42 162384255 162384214 8.330000e-11 78.7
13 TraesCS7B01G323100 chr3A 92.857 42 3 0 3 44 162385804 162385845 8.390000e-06 62.1
14 TraesCS7B01G323100 chr3A 97.143 35 1 0 805 839 25112600 25112634 3.020000e-05 60.2
15 TraesCS7B01G323100 chr4A 100.000 32 0 0 808 839 450877190 450877159 3.020000e-05 60.2
16 TraesCS7B01G323100 chr1D 97.143 35 1 0 805 839 312515454 312515488 3.020000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G323100 chr7B 573921927 573924730 2803 False 5179.0 5179 100.0000 1 2804 1 chr7B.!!$F1 2803
1 TraesCS7B01G323100 chr7D 533756873 533759683 2810 False 3897.0 3897 92.0330 46 2804 1 chr7D.!!$F1 2758
2 TraesCS7B01G323100 chr7A 613175805 613178549 2744 False 1919.5 3201 92.6425 43 2804 2 chr7A.!!$F1 2761
3 TraesCS7B01G323100 chr5A 18389024 18389855 831 True 723.0 723 82.6140 972 1816 1 chr5A.!!$R1 844
4 TraesCS7B01G323100 chr5D 26531865 26532390 525 False 555.0 555 85.8490 911 1435 1 chr5D.!!$F1 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
253 255 1.203087 TCCCAAGTGACGAAGGTCCTA 60.203 52.381 0.0 0.0 42.73 2.94 F
1176 1217 1.153469 GCAGGAGAGGAAGGAAGCG 60.153 63.158 0.0 0.0 0.00 4.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1535 1579 0.179001 TGAGTCGGAGTCAGACACCA 60.179 55.000 22.86 17.01 40.84 4.17 R
2042 2093 1.748122 GCTCACAGGCATCACAGGG 60.748 63.158 0.00 0.00 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.518349 CCAAGTTGTGGCACCGGT 60.518 61.111 16.26 0.00 41.72 5.28
28 29 2.721231 CAAGTTGTGGCACCGGTG 59.279 61.111 30.66 30.66 0.00 4.94
29 30 2.518349 AAGTTGTGGCACCGGTGG 60.518 61.111 34.58 17.30 0.00 4.61
30 31 3.352990 AAGTTGTGGCACCGGTGGT 62.353 57.895 34.58 0.00 35.62 4.16
41 42 2.467566 ACCGGTGGTGTAATTGACTC 57.532 50.000 6.12 0.00 32.98 3.36
209 211 8.972127 AGAGTCTCTATGTAGATTTTGTTAGCA 58.028 33.333 0.00 0.00 0.00 3.49
231 233 4.275689 CACCATGAGTGTAGTTTTCTTGCA 59.724 41.667 0.00 0.00 41.93 4.08
253 255 1.203087 TCCCAAGTGACGAAGGTCCTA 60.203 52.381 0.00 0.00 42.73 2.94
327 329 3.691609 GCCTGTGTGAATTTTAGCTAGCT 59.308 43.478 23.12 23.12 0.00 3.32
383 391 1.660607 TCGTCACGCTAGTAGTAACCG 59.339 52.381 0.00 0.00 0.00 4.44
394 402 7.442364 ACGCTAGTAGTAACCGATATAGTTTGA 59.558 37.037 0.00 0.00 0.00 2.69
416 424 7.398289 TGATTCCTTCCAGGATATTGAGATT 57.602 36.000 0.00 0.00 45.34 2.40
426 434 4.414846 AGGATATTGAGATTGCTGGTCCTT 59.585 41.667 0.00 0.00 29.69 3.36
434 442 5.191722 TGAGATTGCTGGTCCTTTATAACCT 59.808 40.000 0.00 0.00 36.47 3.50
462 470 5.426689 TCTTGGATGTAGCTCTGAATGTT 57.573 39.130 0.00 0.00 0.00 2.71
477 485 8.547069 GCTCTGAATGTTTTAGCTAGTGAATAG 58.453 37.037 0.00 0.00 34.31 1.73
495 503 4.836125 ATAGTTTTGAGTTGCCACTGTG 57.164 40.909 0.00 0.00 31.22 3.66
503 511 5.181690 TGAGTTGCCACTGTGTTTATTTC 57.818 39.130 7.08 0.00 31.22 2.17
542 550 6.498304 ACATTTTAAGATTCCGATGTCATGC 58.502 36.000 0.00 0.00 0.00 4.06
639 647 8.755941 CAGTTCATATACGTGAGAGGTTTATTG 58.244 37.037 0.00 0.00 0.00 1.90
683 691 5.641636 GGTGTTTGATTTGTTGACTTGGTTT 59.358 36.000 0.00 0.00 0.00 3.27
743 753 6.905609 GTCTTTATGTAGATTTTGTTAGCGCC 59.094 38.462 2.29 0.00 0.00 6.53
744 754 6.596106 TCTTTATGTAGATTTTGTTAGCGCCA 59.404 34.615 2.29 0.00 0.00 5.69
746 756 8.439993 TTTATGTAGATTTTGTTAGCGCCATA 57.560 30.769 2.29 0.00 0.00 2.74
747 757 6.935741 ATGTAGATTTTGTTAGCGCCATAA 57.064 33.333 2.29 0.00 0.00 1.90
787 797 4.392138 CCTACCAAGTGACGAAATTCCTTC 59.608 45.833 0.00 0.00 0.00 3.46
820 830 8.034804 GCAGTAAATGAATTTGTTTGGGACTAT 58.965 33.333 0.00 0.00 0.00 2.12
839 849 6.428771 GGACTATAGGCTTTGTTGTTGTTGTA 59.571 38.462 5.35 0.00 0.00 2.41
840 850 7.120726 GGACTATAGGCTTTGTTGTTGTTGTAT 59.879 37.037 5.35 0.00 0.00 2.29
851 884 2.946329 TGTTGTTGTATGCGTGAAAGGT 59.054 40.909 0.00 0.00 0.00 3.50
862 895 3.380004 TGCGTGAAAGGTCTGAATTTGTT 59.620 39.130 0.00 0.00 0.00 2.83
864 897 4.207019 GCGTGAAAGGTCTGAATTTGTTTG 59.793 41.667 0.00 0.00 0.00 2.93
872 905 5.769662 AGGTCTGAATTTGTTTGTCTGCATA 59.230 36.000 0.00 0.00 0.00 3.14
874 907 6.363357 GGTCTGAATTTGTTTGTCTGCATAAC 59.637 38.462 0.00 0.00 0.00 1.89
896 929 4.572389 ACTGCCGCTGTGAATTTTAGATAG 59.428 41.667 1.57 0.00 0.00 2.08
897 930 3.312421 TGCCGCTGTGAATTTTAGATAGC 59.688 43.478 0.00 0.00 0.00 2.97
958 992 4.853924 TTTCCTTGCAGGATTTTCAGAC 57.146 40.909 0.00 0.00 45.34 3.51
1176 1217 1.153469 GCAGGAGAGGAAGGAAGCG 60.153 63.158 0.00 0.00 0.00 4.68
1344 1385 1.215647 CTACATATCGCGGCCCTCC 59.784 63.158 6.13 0.00 0.00 4.30
1533 1577 1.425428 CAAGAGGAAACATCGCGCC 59.575 57.895 0.00 0.00 0.00 6.53
1535 1579 0.321653 AAGAGGAAACATCGCGCCTT 60.322 50.000 0.00 0.00 0.00 4.35
1680 1724 3.128242 CGATGCAAAAGAAGAGAAGGCAT 59.872 43.478 0.00 0.00 42.59 4.40
1701 1751 3.948086 GAGGGACAGCACGTCGTCG 62.948 68.421 0.00 0.00 46.42 5.12
1711 1761 4.509756 CGTCGTCGTCCTCCTCTA 57.490 61.111 0.00 0.00 0.00 2.43
1904 1954 1.323412 GAGCGCCCTCTCAAGAGATA 58.677 55.000 2.29 0.00 44.74 1.98
1911 1961 4.322273 CGCCCTCTCAAGAGATATATTGCA 60.322 45.833 8.62 0.00 44.74 4.08
1961 2011 7.519008 CGCTAGATGATTTCCTGTTATTGTTCC 60.519 40.741 0.00 0.00 0.00 3.62
1980 2030 2.313945 TCCCCCTGTGCTAAGTAGTACT 59.686 50.000 0.00 0.00 39.30 2.73
2042 2093 7.495934 TGCTTGAAGCTATAGATTGTTTCCTAC 59.504 37.037 18.94 0.00 42.97 3.18
2123 2175 0.734889 GTTGTGCTTGACTGCTGTGT 59.265 50.000 0.00 0.00 0.00 3.72
2185 2237 4.415224 TGACCTTACTTACTCCCTCCTT 57.585 45.455 0.00 0.00 0.00 3.36
2208 2260 4.201960 TGCCGAATTATAGCGCATTTTTCA 60.202 37.500 11.47 0.00 0.00 2.69
2213 2266 7.840797 CCGAATTATAGCGCATTTTTCAAAAAG 59.159 33.333 11.47 0.00 0.00 2.27
2214 2267 7.840797 CGAATTATAGCGCATTTTTCAAAAAGG 59.159 33.333 11.47 2.82 0.00 3.11
2236 2289 6.196434 AGGGGTCAAACTTTGTAAACCTTAA 58.804 36.000 9.57 0.00 0.00 1.85
2238 2291 6.982141 GGGGTCAAACTTTGTAAACCTTAAAG 59.018 38.462 9.57 0.00 37.42 1.85
2239 2292 7.364056 GGGGTCAAACTTTGTAAACCTTAAAGT 60.364 37.037 9.57 0.00 44.09 2.66
2270 2329 9.988350 GGACAATTATCAACACTTACAATACAG 57.012 33.333 0.00 0.00 0.00 2.74
2284 2343 9.243105 ACTTACAATACAGAATAAGTGCCATTT 57.757 29.630 0.00 0.00 36.69 2.32
2300 2359 7.658261 AGTGCCATTTGATTCATCATAATGAG 58.342 34.615 17.39 12.20 42.72 2.90
2302 2361 6.041069 TGCCATTTGATTCATCATAATGAGCA 59.959 34.615 19.61 19.61 42.72 4.26
2303 2362 6.365247 GCCATTTGATTCATCATAATGAGCAC 59.635 38.462 17.39 0.00 42.72 4.40
2462 2539 1.751162 CGGTCTCCTCTCGCTCCTT 60.751 63.158 0.00 0.00 0.00 3.36
2505 2582 4.761058 TCCTCCGCTTCTCCGCCT 62.761 66.667 0.00 0.00 0.00 5.52
2513 2590 1.222936 CTTCTCCGCCTTGCTGGAT 59.777 57.895 0.49 0.00 38.35 3.41
2561 2638 4.741239 TCCCCTCCACTGCCCCTC 62.741 72.222 0.00 0.00 0.00 4.30
2591 2668 0.392998 ATGACGGCGCCTTCAAGATT 60.393 50.000 35.53 19.13 0.00 2.40
2791 2888 2.895865 CTGCGCAGGCTCATCCAG 60.896 66.667 29.88 0.00 40.82 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.721231 CACCGGTGCCACAACTTG 59.279 61.111 24.02 0.00 0.00 3.16
12 13 2.518349 CCACCGGTGCCACAACTT 60.518 61.111 29.75 0.00 0.00 2.66
13 14 3.804329 ACCACCGGTGCCACAACT 61.804 61.111 29.75 1.42 32.98 3.16
22 23 1.975680 AGAGTCAATTACACCACCGGT 59.024 47.619 0.00 0.00 35.62 5.28
23 24 2.742053 CAAGAGTCAATTACACCACCGG 59.258 50.000 0.00 0.00 0.00 5.28
24 25 3.399330 ACAAGAGTCAATTACACCACCG 58.601 45.455 0.00 0.00 0.00 4.94
25 26 6.228258 TCTTACAAGAGTCAATTACACCACC 58.772 40.000 0.00 0.00 0.00 4.61
26 27 7.656137 TCTTCTTACAAGAGTCAATTACACCAC 59.344 37.037 0.00 0.00 36.22 4.16
27 28 7.656137 GTCTTCTTACAAGAGTCAATTACACCA 59.344 37.037 0.00 0.00 36.22 4.17
28 29 7.656137 TGTCTTCTTACAAGAGTCAATTACACC 59.344 37.037 0.00 0.00 36.22 4.16
29 30 8.589335 TGTCTTCTTACAAGAGTCAATTACAC 57.411 34.615 0.00 0.00 36.22 2.90
30 31 9.607988 TTTGTCTTCTTACAAGAGTCAATTACA 57.392 29.630 0.00 0.00 40.29 2.41
33 34 9.566432 AGATTTGTCTTCTTACAAGAGTCAATT 57.434 29.630 0.00 0.00 40.29 2.32
34 35 9.213799 GAGATTTGTCTTCTTACAAGAGTCAAT 57.786 33.333 0.00 0.00 40.29 2.57
35 36 8.424918 AGAGATTTGTCTTCTTACAAGAGTCAA 58.575 33.333 0.00 0.00 40.29 3.18
36 37 7.869937 CAGAGATTTGTCTTCTTACAAGAGTCA 59.130 37.037 0.00 0.00 40.29 3.41
37 38 7.148656 GCAGAGATTTGTCTTCTTACAAGAGTC 60.149 40.741 0.00 0.00 40.29 3.36
38 39 6.648725 GCAGAGATTTGTCTTCTTACAAGAGT 59.351 38.462 0.00 0.00 40.29 3.24
39 40 6.873076 AGCAGAGATTTGTCTTCTTACAAGAG 59.127 38.462 0.00 0.00 40.29 2.85
40 41 6.763355 AGCAGAGATTTGTCTTCTTACAAGA 58.237 36.000 0.00 0.00 40.29 3.02
41 42 8.715191 ATAGCAGAGATTTGTCTTCTTACAAG 57.285 34.615 0.00 0.00 40.29 3.16
71 72 5.940192 ACTTTGACGCATATGAACTGAAA 57.060 34.783 6.97 0.00 0.00 2.69
166 168 7.947282 AGAGACTCTGTTATAGAATAGCAACC 58.053 38.462 3.56 0.00 34.32 3.77
209 211 4.275936 GTGCAAGAAAACTACACTCATGGT 59.724 41.667 0.00 0.00 0.00 3.55
231 233 0.680061 GACCTTCGTCACTTGGGAGT 59.320 55.000 0.00 0.00 38.99 3.85
248 250 3.396560 ACTGCAACGTTAACCTTAGGAC 58.603 45.455 4.77 0.00 0.00 3.85
253 255 4.199840 CGTTTACTGCAACGTTAACCTT 57.800 40.909 0.00 0.00 43.72 3.50
416 424 5.887754 AGAAAAGGTTATAAAGGACCAGCA 58.112 37.500 0.00 0.00 38.42 4.41
426 434 9.174166 GCTACATCCAAGAAGAAAAGGTTATAA 57.826 33.333 0.00 0.00 0.00 0.98
434 442 6.114187 TCAGAGCTACATCCAAGAAGAAAA 57.886 37.500 0.00 0.00 0.00 2.29
462 470 8.504005 GCAACTCAAAACTATTCACTAGCTAAA 58.496 33.333 0.00 0.00 0.00 1.85
477 485 2.939460 ACACAGTGGCAACTCAAAAC 57.061 45.000 5.31 0.00 32.98 2.43
484 492 7.995463 TTAAAGAAATAAACACAGTGGCAAC 57.005 32.000 5.31 0.00 0.00 4.17
528 536 3.450578 GCAAATTGCATGACATCGGAAT 58.549 40.909 13.73 0.00 44.26 3.01
579 587 7.880059 AGTTCAGATTTATTTTCTTGCAAGC 57.120 32.000 21.99 4.24 0.00 4.01
612 620 4.920640 ACCTCTCACGTATATGAACTGG 57.079 45.455 0.00 0.00 0.00 4.00
732 742 2.095466 GCACACTTATGGCGCTAACAAA 60.095 45.455 7.64 0.00 0.00 2.83
743 753 6.017400 AGGACAAGAAAATGCACACTTATG 57.983 37.500 0.00 0.00 0.00 1.90
744 754 6.151144 GGTAGGACAAGAAAATGCACACTTAT 59.849 38.462 0.00 0.00 0.00 1.73
746 756 4.278419 GGTAGGACAAGAAAATGCACACTT 59.722 41.667 0.00 0.00 0.00 3.16
747 757 3.821033 GGTAGGACAAGAAAATGCACACT 59.179 43.478 0.00 0.00 0.00 3.55
787 797 7.810766 AACAAATTCATTTACTGCATAACCG 57.189 32.000 0.00 0.00 0.00 4.44
820 830 4.555708 CGCATACAACAACAACAAAGCCTA 60.556 41.667 0.00 0.00 0.00 3.93
839 849 3.569701 ACAAATTCAGACCTTTCACGCAT 59.430 39.130 0.00 0.00 0.00 4.73
840 850 2.948979 ACAAATTCAGACCTTTCACGCA 59.051 40.909 0.00 0.00 0.00 5.24
851 884 7.140705 CAGTTATGCAGACAAACAAATTCAGA 58.859 34.615 5.88 0.00 0.00 3.27
872 905 3.146066 TCTAAAATTCACAGCGGCAGTT 58.854 40.909 1.45 0.00 0.00 3.16
874 907 4.553547 GCTATCTAAAATTCACAGCGGCAG 60.554 45.833 1.45 0.00 0.00 4.85
879 912 5.766222 CCATGGCTATCTAAAATTCACAGC 58.234 41.667 0.00 0.00 0.00 4.40
880 913 5.278660 GGCCATGGCTATCTAAAATTCACAG 60.279 44.000 34.70 0.00 41.60 3.66
896 929 0.394762 TGAAGTGATGAGGCCATGGC 60.395 55.000 29.47 29.47 41.06 4.40
897 930 1.064906 AGTGAAGTGATGAGGCCATGG 60.065 52.381 7.63 7.63 32.09 3.66
958 992 6.431234 AGAAAAGGTTATACAAGACCAGCAAG 59.569 38.462 0.00 0.00 38.42 4.01
1086 1127 4.430423 GCTTCCGCTGCACGTTCG 62.430 66.667 0.00 0.00 41.42 3.95
1344 1385 1.757118 TCCTTAAGCTGATCCGTCCTG 59.243 52.381 0.00 0.00 0.00 3.86
1533 1577 0.962489 AGTCGGAGTCAGACACCAAG 59.038 55.000 22.86 2.21 40.84 3.61
1535 1579 0.179001 TGAGTCGGAGTCAGACACCA 60.179 55.000 22.86 17.01 40.84 4.17
1661 1705 2.485426 CGATGCCTTCTCTTCTTTTGCA 59.515 45.455 0.00 0.00 0.00 4.08
1665 1709 2.093235 CCTCCGATGCCTTCTCTTCTTT 60.093 50.000 0.00 0.00 0.00 2.52
1680 1724 3.371063 GACGTGCTGTCCCTCCGA 61.371 66.667 0.00 0.00 42.04 4.55
1711 1761 2.291282 ACTCGGACTCAGATTCAGACCT 60.291 50.000 0.00 0.00 0.00 3.85
1713 1763 3.013921 AGACTCGGACTCAGATTCAGAC 58.986 50.000 0.61 0.00 0.00 3.51
1854 1904 1.370900 CACGGCTGCACTGAAAAGC 60.371 57.895 0.50 0.00 36.17 3.51
1904 1954 9.754382 GGAAATCAACTGATACATTTGCAATAT 57.246 29.630 0.00 0.00 33.73 1.28
1911 1961 7.530010 CGTTCAGGAAATCAACTGATACATTT 58.470 34.615 0.00 0.00 42.73 2.32
1961 2011 3.633065 GAGAGTACTACTTAGCACAGGGG 59.367 52.174 0.00 0.00 0.00 4.79
2042 2093 1.748122 GCTCACAGGCATCACAGGG 60.748 63.158 0.00 0.00 0.00 4.45
2086 2137 5.163683 GCACAACAAGCTTACAGATGATGAT 60.164 40.000 0.00 0.00 0.00 2.45
2158 2210 6.296259 GGAGGGAGTAAGTAAGGTCAAAATGA 60.296 42.308 0.00 0.00 0.00 2.57
2185 2237 3.980646 AAAATGCGCTATAATTCGGCA 57.019 38.095 9.73 0.00 38.09 5.69
2208 2260 6.013206 AGGTTTACAAAGTTTGACCCCTTTTT 60.013 34.615 22.23 0.27 0.00 1.94
2213 2266 6.468333 TTAAGGTTTACAAAGTTTGACCCC 57.532 37.500 22.23 14.39 0.00 4.95
2214 2267 7.549839 ACTTTAAGGTTTACAAAGTTTGACCC 58.450 34.615 22.23 14.08 38.94 4.46
2236 2289 7.739498 AGTGTTGATAATTGTCCGTAAACTT 57.261 32.000 0.00 0.00 0.00 2.66
2238 2291 8.497554 TGTAAGTGTTGATAATTGTCCGTAAAC 58.502 33.333 0.00 0.00 0.00 2.01
2239 2292 8.604640 TGTAAGTGTTGATAATTGTCCGTAAA 57.395 30.769 0.00 0.00 0.00 2.01
2243 2296 8.661257 TGTATTGTAAGTGTTGATAATTGTCCG 58.339 33.333 0.00 0.00 0.00 4.79
2244 2297 9.988350 CTGTATTGTAAGTGTTGATAATTGTCC 57.012 33.333 0.00 0.00 0.00 4.02
2270 2329 9.970395 TTATGATGAATCAAATGGCACTTATTC 57.030 29.630 0.00 0.00 40.69 1.75
2274 2333 8.014070 TCATTATGATGAATCAAATGGCACTT 57.986 30.769 18.00 0.00 39.29 3.16
2284 2343 7.967890 AATACGTGCTCATTATGATGAATCA 57.032 32.000 0.00 0.00 41.55 2.57
2300 2359 7.349711 ACAATACCGAATATGAAAATACGTGC 58.650 34.615 0.00 0.00 0.00 5.34
2462 2539 2.039624 GAGAGGAGGCAGGGGACA 59.960 66.667 0.00 0.00 0.00 4.02
2626 2711 1.907739 CCAGCGGAGGAAATCAGGA 59.092 57.895 0.00 0.00 0.00 3.86
2780 2877 3.160047 CTCCGCCTGGATGAGCCT 61.160 66.667 0.00 0.00 45.33 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.