Multiple sequence alignment - TraesCS7B01G323000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G323000 chr7B 100.000 2241 0 0 451 2691 573793465 573791225 0.000000e+00 4139.0
1 TraesCS7B01G323000 chr7B 100.000 554 0 0 2914 3467 573791002 573790449 0.000000e+00 1024.0
2 TraesCS7B01G323000 chr7B 100.000 204 0 0 1 204 573793915 573793712 9.080000e-101 377.0
3 TraesCS7B01G323000 chr7D 95.184 1682 69 3 960 2632 533636181 533634503 0.000000e+00 2647.0
4 TraesCS7B01G323000 chr7D 90.732 205 14 4 1 203 533636818 533636617 5.700000e-68 268.0
5 TraesCS7B01G323000 chr7D 88.889 63 7 0 3044 3106 550547427 550547365 1.030000e-10 78.7
6 TraesCS7B01G323000 chr7A 95.680 1551 55 4 960 2498 613026097 613024547 0.000000e+00 2483.0
7 TraesCS7B01G323000 chr7A 91.525 177 13 2 26 202 613026653 613026479 3.460000e-60 243.0
8 TraesCS7B01G323000 chr7A 86.286 175 16 3 2337 2511 613022609 613022443 2.130000e-42 183.0
9 TraesCS7B01G323000 chr7A 81.308 107 15 5 616 721 566510801 566510903 7.980000e-12 82.4
10 TraesCS7B01G323000 chr7A 95.652 46 1 1 813 857 681696737 681696782 4.800000e-09 73.1
11 TraesCS7B01G323000 chr6B 83.106 367 58 2 3105 3467 706516680 706517046 7.170000e-87 331.0
12 TraesCS7B01G323000 chr6B 80.965 373 57 12 3105 3467 124543226 124543594 2.040000e-72 283.0
13 TraesCS7B01G323000 chr6B 80.109 367 65 5 3105 3467 637933140 637933502 2.050000e-67 267.0
14 TraesCS7B01G323000 chr5B 82.656 369 51 10 3105 3467 674426434 674426795 7.220000e-82 315.0
15 TraesCS7B01G323000 chr5B 82.016 367 62 3 3105 3467 617670742 617670376 3.360000e-80 309.0
16 TraesCS7B01G323000 chr1B 81.522 368 60 6 3105 3467 600980422 600980058 2.620000e-76 296.0
17 TraesCS7B01G323000 chr1B 85.864 191 20 6 617 807 94949808 94949625 2.730000e-46 196.0
18 TraesCS7B01G323000 chr1B 83.893 149 23 1 616 764 513409284 513409431 1.300000e-29 141.0
19 TraesCS7B01G323000 chr1B 94.643 56 2 1 812 866 513427721 513427776 6.170000e-13 86.1
20 TraesCS7B01G323000 chr3B 81.471 367 61 5 3105 3467 744218086 744217723 9.410000e-76 294.0
21 TraesCS7B01G323000 chr3B 82.474 97 13 4 626 721 625211462 625211369 7.980000e-12 82.4
22 TraesCS7B01G323000 chr6D 79.157 427 71 11 3042 3455 6830520 6830941 2.630000e-71 279.0
23 TraesCS7B01G323000 chr3D 80.109 367 65 5 3105 3467 588200998 588201360 2.050000e-67 267.0
24 TraesCS7B01G323000 chr3D 86.905 84 10 1 3024 3106 367333770 367333853 3.680000e-15 93.5
25 TraesCS7B01G323000 chr2B 81.865 193 26 9 615 801 647635166 647634977 1.670000e-33 154.0
26 TraesCS7B01G323000 chr5D 83.478 115 17 2 2552 2666 294416853 294416741 4.730000e-19 106.0
27 TraesCS7B01G323000 chr5D 95.000 60 1 2 812 870 531991414 531991472 3.680000e-15 93.5
28 TraesCS7B01G323000 chr5D 84.783 92 7 7 617 706 544235359 544235445 6.170000e-13 86.1
29 TraesCS7B01G323000 chr2A 89.286 84 6 3 3025 3106 457224351 457224433 6.120000e-18 102.0
30 TraesCS7B01G323000 chr4A 90.278 72 7 0 3035 3106 654062388 654062317 1.020000e-15 95.3
31 TraesCS7B01G323000 chr3A 86.905 84 10 1 3024 3106 648739627 648739544 3.680000e-15 93.5
32 TraesCS7B01G323000 chrUn 88.732 71 8 0 3035 3105 134264143 134264073 1.710000e-13 87.9
33 TraesCS7B01G323000 chr1D 94.643 56 2 1 813 867 249744487 249744542 6.170000e-13 86.1
34 TraesCS7B01G323000 chr1D 81.250 112 15 6 615 724 430428861 430428754 6.170000e-13 86.1
35 TraesCS7B01G323000 chr1D 87.324 71 7 2 3023 3091 9827431 9827501 2.870000e-11 80.5
36 TraesCS7B01G323000 chr5A 86.486 74 9 1 3010 3082 311985682 311985609 2.870000e-11 80.5
37 TraesCS7B01G323000 chr4D 92.157 51 4 0 3051 3101 82327067 82327117 4.800000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G323000 chr7B 573790449 573793915 3466 True 1846.666667 4139 100.000000 1 3467 3 chr7B.!!$R1 3466
1 TraesCS7B01G323000 chr7D 533634503 533636818 2315 True 1457.500000 2647 92.958000 1 2632 2 chr7D.!!$R2 2631
2 TraesCS7B01G323000 chr7A 613022443 613026653 4210 True 969.666667 2483 91.163667 26 2511 3 chr7A.!!$R1 2485


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
732 734 0.033504 GCCGAAGACAGTGTCCTCAA 59.966 55.0 19.71 0.0 32.18 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2590 3110 0.461163 GCGAGCTCTTTCCTTCCCTC 60.461 60.0 12.85 0.0 0.0 4.3 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 30 8.763356 GTCATGCAAAAACAGATAAATTTGTCA 58.237 29.630 16.15 0.00 35.68 3.58
114 116 3.648339 AAAAATTGTCGCACTGCAGAT 57.352 38.095 23.35 1.19 0.00 2.90
138 140 5.452078 AATTCTCATGCGTTTTCAAGGAA 57.548 34.783 0.00 0.00 0.00 3.36
150 152 6.098679 CGTTTTCAAGGAATTGCCATGATTA 58.901 36.000 0.00 0.00 43.38 1.75
152 154 4.898829 TCAAGGAATTGCCATGATTACG 57.101 40.909 0.00 0.00 39.34 3.18
176 178 6.029346 ACATGGAGAATTGTAAGCCAAAAG 57.971 37.500 0.00 0.00 36.44 2.27
203 205 6.854778 ACAAAATATTGAAAATTGCCATGGC 58.145 32.000 30.54 30.54 38.94 4.40
492 494 5.619220 ACTATCGTTATCTCGTAGTTCCCT 58.381 41.667 0.00 0.00 30.30 4.20
500 502 3.090037 TCTCGTAGTTCCCTCAAAGGAG 58.910 50.000 0.00 0.00 37.67 3.69
527 529 7.225341 GCATTTGAAACAAAAACTTCAGGATCT 59.775 33.333 0.00 0.00 33.30 2.75
528 530 9.748708 CATTTGAAACAAAAACTTCAGGATCTA 57.251 29.630 0.00 0.00 33.30 1.98
531 533 8.690203 TGAAACAAAAACTTCAGGATCTATGA 57.310 30.769 0.00 0.00 0.00 2.15
532 534 8.567948 TGAAACAAAAACTTCAGGATCTATGAC 58.432 33.333 0.00 0.00 0.00 3.06
534 536 5.946377 ACAAAAACTTCAGGATCTATGACCC 59.054 40.000 0.00 0.00 0.00 4.46
540 542 2.965831 TCAGGATCTATGACCCGGAAAG 59.034 50.000 0.73 0.00 0.00 2.62
558 560 3.414700 GACGTGCAAGAGGCCGTG 61.415 66.667 6.65 0.00 45.20 4.94
559 561 4.988598 ACGTGCAAGAGGCCGTGG 62.989 66.667 6.65 0.00 44.12 4.94
563 565 4.752879 GCAAGAGGCCGTGGCGTA 62.753 66.667 6.00 0.00 43.06 4.42
564 566 2.509336 CAAGAGGCCGTGGCGTAG 60.509 66.667 6.00 0.00 43.06 3.51
565 567 2.678934 AAGAGGCCGTGGCGTAGA 60.679 61.111 6.00 0.00 43.06 2.59
594 596 9.745018 AATTCTTCAAAATCTGATACTTCCTGA 57.255 29.630 0.00 0.00 32.78 3.86
611 613 5.739752 TCCTGAATACATTCATTTGAGCG 57.260 39.130 5.16 0.00 44.92 5.03
612 614 5.427378 TCCTGAATACATTCATTTGAGCGA 58.573 37.500 5.16 0.00 44.92 4.93
613 615 6.057533 TCCTGAATACATTCATTTGAGCGAT 58.942 36.000 5.16 0.00 44.92 4.58
614 616 6.543465 TCCTGAATACATTCATTTGAGCGATT 59.457 34.615 5.16 0.00 44.92 3.34
615 617 7.067372 TCCTGAATACATTCATTTGAGCGATTT 59.933 33.333 5.16 0.00 44.92 2.17
616 618 7.703621 CCTGAATACATTCATTTGAGCGATTTT 59.296 33.333 5.16 0.00 44.92 1.82
617 619 8.984891 TGAATACATTCATTTGAGCGATTTTT 57.015 26.923 0.45 0.00 41.51 1.94
653 655 9.950680 ACTATCATGGTTTTTATAGCAAATTCG 57.049 29.630 0.00 0.00 0.00 3.34
654 656 9.398170 CTATCATGGTTTTTATAGCAAATTCGG 57.602 33.333 0.00 0.00 0.00 4.30
655 657 7.397892 TCATGGTTTTTATAGCAAATTCGGA 57.602 32.000 0.00 0.00 0.00 4.55
656 658 7.831753 TCATGGTTTTTATAGCAAATTCGGAA 58.168 30.769 0.00 0.00 0.00 4.30
657 659 8.307483 TCATGGTTTTTATAGCAAATTCGGAAA 58.693 29.630 0.00 0.00 0.00 3.13
658 660 7.876896 TGGTTTTTATAGCAAATTCGGAAAC 57.123 32.000 0.00 0.00 0.00 2.78
659 661 7.662897 TGGTTTTTATAGCAAATTCGGAAACT 58.337 30.769 0.00 0.00 0.00 2.66
660 662 8.794553 TGGTTTTTATAGCAAATTCGGAAACTA 58.205 29.630 0.00 0.00 0.00 2.24
661 663 9.797556 GGTTTTTATAGCAAATTCGGAAACTAT 57.202 29.630 0.00 3.39 0.00 2.12
667 669 6.619801 AGCAAATTCGGAAACTATATCACC 57.380 37.500 0.00 0.00 0.00 4.02
668 670 6.357367 AGCAAATTCGGAAACTATATCACCT 58.643 36.000 0.00 0.00 0.00 4.00
669 671 6.260936 AGCAAATTCGGAAACTATATCACCTG 59.739 38.462 0.00 0.00 0.00 4.00
670 672 6.260050 GCAAATTCGGAAACTATATCACCTGA 59.740 38.462 0.00 0.00 0.00 3.86
671 673 7.201696 GCAAATTCGGAAACTATATCACCTGAA 60.202 37.037 0.00 0.00 0.00 3.02
672 674 8.338259 CAAATTCGGAAACTATATCACCTGAAG 58.662 37.037 0.00 0.00 0.00 3.02
673 675 6.540438 TTCGGAAACTATATCACCTGAAGT 57.460 37.500 0.00 0.00 0.00 3.01
674 676 7.649533 TTCGGAAACTATATCACCTGAAGTA 57.350 36.000 0.00 0.00 0.00 2.24
675 677 7.649533 TCGGAAACTATATCACCTGAAGTAA 57.350 36.000 0.00 0.00 0.00 2.24
676 678 8.070034 TCGGAAACTATATCACCTGAAGTAAA 57.930 34.615 0.00 0.00 0.00 2.01
677 679 8.533657 TCGGAAACTATATCACCTGAAGTAAAA 58.466 33.333 0.00 0.00 0.00 1.52
678 680 9.158233 CGGAAACTATATCACCTGAAGTAAAAA 57.842 33.333 0.00 0.00 0.00 1.94
697 699 2.215942 AAACACAGAACTATGCCCCC 57.784 50.000 0.00 0.00 0.00 5.40
698 700 0.035439 AACACAGAACTATGCCCCCG 60.035 55.000 0.00 0.00 0.00 5.73
699 701 1.198759 ACACAGAACTATGCCCCCGT 61.199 55.000 0.00 0.00 0.00 5.28
700 702 0.462047 CACAGAACTATGCCCCCGTC 60.462 60.000 0.00 0.00 0.00 4.79
701 703 1.227263 CAGAACTATGCCCCCGTCG 60.227 63.158 0.00 0.00 0.00 5.12
702 704 2.108362 GAACTATGCCCCCGTCGG 59.892 66.667 3.60 3.60 0.00 4.79
720 722 4.697756 CCTTGCGTGGGCCGAAGA 62.698 66.667 4.57 0.00 39.56 2.87
721 723 3.423154 CTTGCGTGGGCCGAAGAC 61.423 66.667 4.57 0.00 39.56 3.01
722 724 4.243008 TTGCGTGGGCCGAAGACA 62.243 61.111 4.57 0.00 39.56 3.41
723 725 4.680237 TGCGTGGGCCGAAGACAG 62.680 66.667 4.57 0.00 39.56 3.51
724 726 4.681978 GCGTGGGCCGAAGACAGT 62.682 66.667 4.57 0.00 39.56 3.55
725 727 2.738521 CGTGGGCCGAAGACAGTG 60.739 66.667 0.00 0.00 39.56 3.66
726 728 2.426023 GTGGGCCGAAGACAGTGT 59.574 61.111 0.00 0.00 0.00 3.55
727 729 1.668151 GTGGGCCGAAGACAGTGTC 60.668 63.158 15.78 15.78 0.00 3.67
728 730 2.047179 GGGCCGAAGACAGTGTCC 60.047 66.667 19.71 3.71 32.18 4.02
729 731 2.584391 GGGCCGAAGACAGTGTCCT 61.584 63.158 19.71 6.91 32.18 3.85
730 732 1.079750 GGCCGAAGACAGTGTCCTC 60.080 63.158 19.71 15.26 32.18 3.71
731 733 1.666011 GCCGAAGACAGTGTCCTCA 59.334 57.895 19.71 0.00 32.18 3.86
732 734 0.033504 GCCGAAGACAGTGTCCTCAA 59.966 55.000 19.71 0.00 32.18 3.02
733 735 1.338200 GCCGAAGACAGTGTCCTCAAT 60.338 52.381 19.71 0.00 32.18 2.57
734 736 2.872038 GCCGAAGACAGTGTCCTCAATT 60.872 50.000 19.71 7.03 32.18 2.32
735 737 3.616560 GCCGAAGACAGTGTCCTCAATTA 60.617 47.826 19.71 0.00 32.18 1.40
736 738 4.177026 CCGAAGACAGTGTCCTCAATTAG 58.823 47.826 19.71 7.38 32.18 1.73
737 739 4.322049 CCGAAGACAGTGTCCTCAATTAGT 60.322 45.833 19.71 0.00 32.18 2.24
738 740 5.230942 CGAAGACAGTGTCCTCAATTAGTT 58.769 41.667 19.71 4.05 32.18 2.24
739 741 5.119279 CGAAGACAGTGTCCTCAATTAGTTG 59.881 44.000 19.71 0.00 33.18 3.16
740 742 5.552870 AGACAGTGTCCTCAATTAGTTGT 57.447 39.130 19.71 0.00 33.45 3.32
741 743 5.930135 AGACAGTGTCCTCAATTAGTTGTT 58.070 37.500 19.71 0.00 33.45 2.83
742 744 5.760253 AGACAGTGTCCTCAATTAGTTGTTG 59.240 40.000 19.71 0.00 33.45 3.33
743 745 4.821805 ACAGTGTCCTCAATTAGTTGTTGG 59.178 41.667 0.00 2.82 36.69 3.77
744 746 3.821033 AGTGTCCTCAATTAGTTGTTGGC 59.179 43.478 0.00 0.00 36.69 4.52
745 747 3.057526 GTGTCCTCAATTAGTTGTTGGCC 60.058 47.826 0.00 0.00 36.69 5.36
746 748 2.161609 GTCCTCAATTAGTTGTTGGCCG 59.838 50.000 0.00 0.00 36.69 6.13
747 749 2.039216 TCCTCAATTAGTTGTTGGCCGA 59.961 45.455 0.00 0.00 36.69 5.54
748 750 2.817258 CCTCAATTAGTTGTTGGCCGAA 59.183 45.455 0.00 0.00 36.69 4.30
749 751 3.254657 CCTCAATTAGTTGTTGGCCGAAA 59.745 43.478 0.00 0.00 36.69 3.46
750 752 4.261825 CCTCAATTAGTTGTTGGCCGAAAA 60.262 41.667 0.00 0.00 36.69 2.29
751 753 4.865776 TCAATTAGTTGTTGGCCGAAAAG 58.134 39.130 0.00 0.00 36.69 2.27
752 754 3.934457 ATTAGTTGTTGGCCGAAAAGG 57.066 42.857 0.00 0.00 44.97 3.11
753 755 1.611519 TAGTTGTTGGCCGAAAAGGG 58.388 50.000 0.00 0.00 41.48 3.95
762 764 3.178539 CGAAAAGGGCTCTTCGGC 58.821 61.111 0.00 0.00 40.52 5.54
770 772 4.699522 GCTCTTCGGCCCGTGGTT 62.700 66.667 1.63 0.00 0.00 3.67
771 773 2.742372 CTCTTCGGCCCGTGGTTG 60.742 66.667 1.63 0.00 0.00 3.77
772 774 3.234630 CTCTTCGGCCCGTGGTTGA 62.235 63.158 1.63 0.00 0.00 3.18
773 775 3.047877 CTTCGGCCCGTGGTTGAC 61.048 66.667 1.63 0.00 0.00 3.18
783 785 0.796312 CGTGGTTGACGGAAGAATGG 59.204 55.000 0.00 0.00 44.85 3.16
784 786 0.521735 GTGGTTGACGGAAGAATGGC 59.478 55.000 0.00 0.00 0.00 4.40
785 787 0.400213 TGGTTGACGGAAGAATGGCT 59.600 50.000 0.00 0.00 0.00 4.75
786 788 0.804989 GGTTGACGGAAGAATGGCTG 59.195 55.000 0.00 0.00 0.00 4.85
787 789 1.523758 GTTGACGGAAGAATGGCTGT 58.476 50.000 0.00 0.00 0.00 4.40
788 790 2.614481 GGTTGACGGAAGAATGGCTGTA 60.614 50.000 0.00 0.00 0.00 2.74
789 791 2.380084 TGACGGAAGAATGGCTGTAC 57.620 50.000 0.00 0.00 0.00 2.90
790 792 1.899814 TGACGGAAGAATGGCTGTACT 59.100 47.619 0.00 0.00 0.00 2.73
791 793 2.271800 GACGGAAGAATGGCTGTACTG 58.728 52.381 0.00 0.00 0.00 2.74
792 794 1.066143 ACGGAAGAATGGCTGTACTGG 60.066 52.381 1.65 0.00 0.00 4.00
793 795 1.743772 CGGAAGAATGGCTGTACTGGG 60.744 57.143 1.65 0.00 0.00 4.45
794 796 1.383523 GAAGAATGGCTGTACTGGGC 58.616 55.000 1.65 4.21 0.00 5.36
799 801 2.125106 GGCTGTACTGGGCCGAAG 60.125 66.667 0.00 0.00 38.91 3.79
800 802 2.656069 GGCTGTACTGGGCCGAAGA 61.656 63.158 10.86 0.00 38.91 2.87
801 803 1.448013 GCTGTACTGGGCCGAAGAC 60.448 63.158 10.86 1.67 0.00 3.01
802 804 1.889530 GCTGTACTGGGCCGAAGACT 61.890 60.000 10.86 0.00 0.00 3.24
803 805 0.108615 CTGTACTGGGCCGAAGACTG 60.109 60.000 10.86 1.76 0.00 3.51
804 806 1.218316 GTACTGGGCCGAAGACTGG 59.782 63.158 10.86 0.00 0.00 4.00
826 828 2.696076 CGCGAGGTGATAAGTTTTCG 57.304 50.000 0.00 0.00 0.00 3.46
827 829 2.256174 CGCGAGGTGATAAGTTTTCGA 58.744 47.619 0.00 0.00 0.00 3.71
828 830 2.664568 CGCGAGGTGATAAGTTTTCGAA 59.335 45.455 0.00 0.00 0.00 3.71
829 831 3.306166 CGCGAGGTGATAAGTTTTCGAAT 59.694 43.478 0.00 0.00 0.00 3.34
830 832 4.201685 CGCGAGGTGATAAGTTTTCGAATT 60.202 41.667 0.00 0.00 0.00 2.17
831 833 5.628134 GCGAGGTGATAAGTTTTCGAATTT 58.372 37.500 0.00 0.00 0.00 1.82
832 834 5.508224 GCGAGGTGATAAGTTTTCGAATTTG 59.492 40.000 0.00 0.00 0.00 2.32
833 835 5.508224 CGAGGTGATAAGTTTTCGAATTTGC 59.492 40.000 0.00 0.00 0.00 3.68
834 836 6.575162 AGGTGATAAGTTTTCGAATTTGCT 57.425 33.333 0.00 0.00 0.00 3.91
835 837 7.412563 CGAGGTGATAAGTTTTCGAATTTGCTA 60.413 37.037 0.00 0.00 0.00 3.49
836 838 8.281212 AGGTGATAAGTTTTCGAATTTGCTAT 57.719 30.769 0.00 0.00 0.00 2.97
837 839 9.391006 AGGTGATAAGTTTTCGAATTTGCTATA 57.609 29.630 0.00 0.00 0.00 1.31
838 840 9.997482 GGTGATAAGTTTTCGAATTTGCTATAA 57.003 29.630 0.00 0.00 0.00 0.98
914 978 2.472695 TGTTGAGAATCCCCAAGTCG 57.527 50.000 0.00 0.00 0.00 4.18
1025 1146 1.503818 TTCGCCAAGGAAGTTGTCGC 61.504 55.000 0.00 0.00 37.44 5.19
1065 1186 2.176273 CCTTGGCCGCATCTTCTCG 61.176 63.158 0.00 0.00 0.00 4.04
1443 1579 3.984193 GATGCAGAGGTTGGCGGCT 62.984 63.158 11.43 0.00 0.00 5.52
1512 1648 2.435693 GCTGCTCGTCCAGGGGTAT 61.436 63.158 0.00 0.00 33.44 2.73
1662 1798 2.047655 ATCGTCGGCGCCAAGAAA 60.048 55.556 28.98 7.69 38.14 2.52
1749 1885 2.504244 GAGTGGTTCGAGACGCCG 60.504 66.667 0.00 0.00 0.00 6.46
1752 1888 4.047059 TGGTTCGAGACGCCGGAC 62.047 66.667 5.05 0.00 37.32 4.79
1989 2128 4.222847 GACCTCGCCCGGGACATC 62.223 72.222 29.31 9.94 0.00 3.06
2524 3044 7.157050 TCGTCGCAATAAATAGTCACAATAC 57.843 36.000 0.00 0.00 0.00 1.89
2525 3045 6.976349 TCGTCGCAATAAATAGTCACAATACT 59.024 34.615 0.00 0.00 0.00 2.12
2575 3095 1.732259 GGTCAGTTGATTTCGCGTGAT 59.268 47.619 5.77 0.56 0.00 3.06
2577 3097 1.731709 TCAGTTGATTTCGCGTGATGG 59.268 47.619 5.77 0.00 0.00 3.51
2586 3106 1.428448 TCGCGTGATGGAAGAAACAG 58.572 50.000 5.77 0.00 0.00 3.16
2589 3109 2.032030 CGCGTGATGGAAGAAACAGTTT 60.032 45.455 0.00 0.00 0.00 2.66
2590 3110 3.300009 GCGTGATGGAAGAAACAGTTTG 58.700 45.455 2.34 0.00 0.00 2.93
2610 3130 0.907230 AGGGAAGGAAAGAGCTCGCT 60.907 55.000 8.37 0.00 0.00 4.93
2614 3134 0.248843 AAGGAAAGAGCTCGCTGGAG 59.751 55.000 8.37 0.00 43.46 3.86
2624 3144 0.972983 CTCGCTGGAGGGAAGGAAGA 60.973 60.000 0.00 0.00 36.61 2.87
2632 3152 0.907230 AGGGAAGGAAGAAGCTCGCT 60.907 55.000 0.00 0.00 0.00 4.93
2633 3153 0.824759 GGGAAGGAAGAAGCTCGCTA 59.175 55.000 0.00 0.00 0.00 4.26
2634 3154 1.202475 GGGAAGGAAGAAGCTCGCTAG 60.202 57.143 0.00 0.00 0.00 3.42
2663 3183 5.593010 GCTACGCCATTATCTATCTTAGGG 58.407 45.833 0.00 0.00 0.00 3.53
2665 3185 6.351117 GCTACGCCATTATCTATCTTAGGGTT 60.351 42.308 0.00 0.00 0.00 4.11
2666 3186 5.794894 ACGCCATTATCTATCTTAGGGTTG 58.205 41.667 0.00 0.00 0.00 3.77
2667 3187 5.307196 ACGCCATTATCTATCTTAGGGTTGT 59.693 40.000 0.00 0.00 0.00 3.32
2670 3190 6.476378 CCATTATCTATCTTAGGGTTGTGGG 58.524 44.000 0.00 0.00 0.00 4.61
2672 3192 2.771688 TCTATCTTAGGGTTGTGGGGG 58.228 52.381 0.00 0.00 0.00 5.40
2942 3462 4.908966 CAAATTTGCCGAAAAGGATGTC 57.091 40.909 5.01 0.00 45.00 3.06
2943 3463 3.592898 AATTTGCCGAAAAGGATGTCC 57.407 42.857 0.00 0.00 45.00 4.02
2944 3464 0.878416 TTTGCCGAAAAGGATGTCCG 59.122 50.000 0.00 0.00 45.00 4.79
2945 3465 0.035598 TTGCCGAAAAGGATGTCCGA 59.964 50.000 0.00 0.00 45.00 4.55
2946 3466 0.035598 TGCCGAAAAGGATGTCCGAA 59.964 50.000 0.00 0.00 45.00 4.30
2947 3467 0.727398 GCCGAAAAGGATGTCCGAAG 59.273 55.000 0.00 0.00 45.00 3.79
2948 3468 0.727398 CCGAAAAGGATGTCCGAAGC 59.273 55.000 0.00 0.00 45.00 3.86
2949 3469 1.438651 CGAAAAGGATGTCCGAAGCA 58.561 50.000 0.00 0.00 42.08 3.91
2950 3470 1.394917 CGAAAAGGATGTCCGAAGCAG 59.605 52.381 0.00 0.00 42.08 4.24
2951 3471 1.131315 GAAAAGGATGTCCGAAGCAGC 59.869 52.381 0.00 0.00 42.08 5.25
2952 3472 1.021390 AAAGGATGTCCGAAGCAGCG 61.021 55.000 0.00 0.00 42.08 5.18
2960 3480 2.213483 CCGAAGCAGCGGTAATACG 58.787 57.895 8.89 0.00 46.07 3.06
2961 3481 1.213094 CCGAAGCAGCGGTAATACGG 61.213 60.000 8.89 7.74 46.07 4.02
2962 3482 0.526954 CGAAGCAGCGGTAATACGGT 60.527 55.000 0.11 0.00 46.53 4.83
2973 3493 3.425227 CGGTAATACGGTGGTGAAAAAGC 60.425 47.826 0.00 0.00 0.00 3.51
2982 3502 2.099756 GTGGTGAAAAAGCAGAGCAAGT 59.900 45.455 0.00 0.00 36.83 3.16
2987 3507 3.944650 TGAAAAAGCAGAGCAAGTGTGTA 59.055 39.130 0.00 0.00 0.00 2.90
2989 3509 4.756084 AAAAGCAGAGCAAGTGTGTATC 57.244 40.909 0.00 0.00 0.00 2.24
3000 3520 5.128171 AGCAAGTGTGTATCTAACCCGAATA 59.872 40.000 0.00 0.00 0.00 1.75
3003 3523 6.010294 AGTGTGTATCTAACCCGAATATCG 57.990 41.667 0.00 0.00 40.07 2.92
3019 3539 6.362686 CGAATATCGTTGGGAATGTTGTATG 58.637 40.000 0.00 0.00 34.72 2.39
3086 3607 9.063615 TGATCATAGTACAAGTCACGTACATAT 57.936 33.333 0.00 0.00 41.40 1.78
3088 3609 7.570161 TCATAGTACAAGTCACGTACATATCG 58.430 38.462 0.00 0.00 41.40 2.92
3090 3611 5.804173 AGTACAAGTCACGTACATATCGAC 58.196 41.667 0.00 0.00 41.40 4.20
3093 3614 4.201891 ACAAGTCACGTACATATCGACCTC 60.202 45.833 0.00 0.00 0.00 3.85
3102 3623 3.596214 ACATATCGACCTCGCAAAACTT 58.404 40.909 0.00 0.00 39.60 2.66
3103 3624 4.751060 ACATATCGACCTCGCAAAACTTA 58.249 39.130 0.00 0.00 39.60 2.24
3117 3638 6.485313 TCGCAAAACTTAAAGAATCCTCTGAA 59.515 34.615 0.00 0.00 30.03 3.02
3122 3643 8.980481 AAACTTAAAGAATCCTCTGAACTTGA 57.020 30.769 0.00 0.00 30.03 3.02
3123 3644 7.971183 ACTTAAAGAATCCTCTGAACTTGAC 57.029 36.000 0.00 0.00 30.03 3.18
3124 3645 7.509546 ACTTAAAGAATCCTCTGAACTTGACA 58.490 34.615 0.00 0.00 30.03 3.58
3125 3646 7.442666 ACTTAAAGAATCCTCTGAACTTGACAC 59.557 37.037 0.00 0.00 30.03 3.67
3126 3647 5.559148 AAGAATCCTCTGAACTTGACACT 57.441 39.130 0.00 0.00 30.03 3.55
3127 3648 4.892433 AGAATCCTCTGAACTTGACACTG 58.108 43.478 0.00 0.00 0.00 3.66
3128 3649 4.590647 AGAATCCTCTGAACTTGACACTGA 59.409 41.667 0.00 0.00 0.00 3.41
3129 3650 3.735237 TCCTCTGAACTTGACACTGAC 57.265 47.619 0.00 0.00 0.00 3.51
3130 3651 3.031013 TCCTCTGAACTTGACACTGACA 58.969 45.455 0.00 0.00 0.00 3.58
3131 3652 3.643320 TCCTCTGAACTTGACACTGACAT 59.357 43.478 0.00 0.00 0.00 3.06
3132 3653 3.993081 CCTCTGAACTTGACACTGACATC 59.007 47.826 0.00 0.00 0.00 3.06
3133 3654 3.993081 CTCTGAACTTGACACTGACATCC 59.007 47.826 0.00 0.00 0.00 3.51
3134 3655 2.733552 CTGAACTTGACACTGACATCCG 59.266 50.000 0.00 0.00 0.00 4.18
3135 3656 1.461127 GAACTTGACACTGACATCCGC 59.539 52.381 0.00 0.00 0.00 5.54
3136 3657 0.320771 ACTTGACACTGACATCCGCC 60.321 55.000 0.00 0.00 0.00 6.13
3137 3658 0.320683 CTTGACACTGACATCCGCCA 60.321 55.000 0.00 0.00 0.00 5.69
3138 3659 0.602638 TTGACACTGACATCCGCCAC 60.603 55.000 0.00 0.00 0.00 5.01
3139 3660 1.741770 GACACTGACATCCGCCACC 60.742 63.158 0.00 0.00 0.00 4.61
3140 3661 2.172483 GACACTGACATCCGCCACCT 62.172 60.000 0.00 0.00 0.00 4.00
3141 3662 1.742880 CACTGACATCCGCCACCTG 60.743 63.158 0.00 0.00 0.00 4.00
3142 3663 2.821366 CTGACATCCGCCACCTGC 60.821 66.667 0.00 0.00 0.00 4.85
3143 3664 3.610619 CTGACATCCGCCACCTGCA 62.611 63.158 0.00 0.00 41.33 4.41
3144 3665 2.124570 GACATCCGCCACCTGCAT 60.125 61.111 0.00 0.00 41.33 3.96
3145 3666 2.124570 ACATCCGCCACCTGCATC 60.125 61.111 0.00 0.00 41.33 3.91
3146 3667 2.191375 CATCCGCCACCTGCATCT 59.809 61.111 0.00 0.00 41.33 2.90
3147 3668 2.184830 CATCCGCCACCTGCATCTG 61.185 63.158 0.00 0.00 41.33 2.90
3148 3669 2.369633 ATCCGCCACCTGCATCTGA 61.370 57.895 0.00 0.00 41.33 3.27
3149 3670 2.599645 ATCCGCCACCTGCATCTGAC 62.600 60.000 0.00 0.00 41.33 3.51
3150 3671 2.046988 CGCCACCTGCATCTGACA 60.047 61.111 0.00 0.00 41.33 3.58
3151 3672 2.393768 CGCCACCTGCATCTGACAC 61.394 63.158 0.00 0.00 41.33 3.67
3152 3673 2.042831 GCCACCTGCATCTGACACC 61.043 63.158 0.00 0.00 40.77 4.16
3153 3674 1.376086 CCACCTGCATCTGACACCA 59.624 57.895 0.00 0.00 0.00 4.17
3154 3675 0.957395 CCACCTGCATCTGACACCAC 60.957 60.000 0.00 0.00 0.00 4.16
3155 3676 0.957395 CACCTGCATCTGACACCACC 60.957 60.000 0.00 0.00 0.00 4.61
3156 3677 1.376086 CCTGCATCTGACACCACCA 59.624 57.895 0.00 0.00 0.00 4.17
3157 3678 0.957395 CCTGCATCTGACACCACCAC 60.957 60.000 0.00 0.00 0.00 4.16
3158 3679 0.250424 CTGCATCTGACACCACCACA 60.250 55.000 0.00 0.00 0.00 4.17
3159 3680 0.250424 TGCATCTGACACCACCACAG 60.250 55.000 0.00 0.00 0.00 3.66
3160 3681 0.250467 GCATCTGACACCACCACAGT 60.250 55.000 0.00 0.00 33.93 3.55
3161 3682 1.001974 GCATCTGACACCACCACAGTA 59.998 52.381 0.00 0.00 33.93 2.74
3162 3683 2.932622 GCATCTGACACCACCACAGTAG 60.933 54.545 0.00 0.00 33.93 2.57
3163 3684 2.082140 TCTGACACCACCACAGTAGT 57.918 50.000 0.00 0.00 33.93 2.73
3164 3685 1.686587 TCTGACACCACCACAGTAGTG 59.313 52.381 0.00 0.00 45.47 2.74
3165 3686 0.105964 TGACACCACCACAGTAGTGC 59.894 55.000 0.00 0.00 44.53 4.40
3166 3687 0.602905 GACACCACCACAGTAGTGCC 60.603 60.000 0.00 0.00 44.53 5.01
3167 3688 1.341913 ACACCACCACAGTAGTGCCA 61.342 55.000 0.00 0.00 44.53 4.92
3168 3689 0.179032 CACCACCACAGTAGTGCCAA 60.179 55.000 0.00 0.00 44.53 4.52
3169 3690 0.548989 ACCACCACAGTAGTGCCAAA 59.451 50.000 0.00 0.00 44.53 3.28
3170 3691 1.238439 CCACCACAGTAGTGCCAAAG 58.762 55.000 0.00 0.00 44.53 2.77
3171 3692 1.202758 CCACCACAGTAGTGCCAAAGA 60.203 52.381 0.00 0.00 44.53 2.52
3172 3693 2.571212 CACCACAGTAGTGCCAAAGAA 58.429 47.619 0.00 0.00 44.53 2.52
3173 3694 2.948979 CACCACAGTAGTGCCAAAGAAA 59.051 45.455 0.00 0.00 44.53 2.52
3174 3695 3.380004 CACCACAGTAGTGCCAAAGAAAA 59.620 43.478 0.00 0.00 44.53 2.29
3175 3696 4.020543 ACCACAGTAGTGCCAAAGAAAAA 58.979 39.130 0.00 0.00 44.53 1.94
3200 3721 1.281867 TGATGGACCATCTTCACACCC 59.718 52.381 30.11 6.56 41.06 4.61
3206 3727 0.036010 CCATCTTCACACCCGAGCTT 60.036 55.000 0.00 0.00 0.00 3.74
3210 3731 1.284982 CTTCACACCCGAGCTTGACG 61.285 60.000 1.22 0.00 0.00 4.35
3232 3753 2.146204 GGCTCCACAGCTGATATGCAG 61.146 57.143 23.35 4.91 46.03 4.41
3253 3774 2.877300 GCTTTGCAGACCTCCAAGATGA 60.877 50.000 0.00 0.00 0.00 2.92
3256 3777 1.980765 TGCAGACCTCCAAGATGACTT 59.019 47.619 0.00 0.00 36.73 3.01
3270 3791 5.796424 AGATGACTTGCCAAAAACAAGAT 57.204 34.783 10.26 0.00 45.99 2.40
3277 3798 6.223120 ACTTGCCAAAAACAAGATCATTACC 58.777 36.000 10.26 0.00 45.99 2.85
3287 3808 4.992319 ACAAGATCATTACCGTTGAACGAA 59.008 37.500 20.47 6.81 46.05 3.85
3289 3810 5.968387 AGATCATTACCGTTGAACGAATC 57.032 39.130 20.47 11.07 46.05 2.52
3297 3818 1.792006 GTTGAACGAATCAGACCGGT 58.208 50.000 6.92 6.92 39.77 5.28
3313 3834 2.517402 GTGCAACACCCCGGACAA 60.517 61.111 0.73 0.00 36.32 3.18
3314 3835 2.203280 TGCAACACCCCGGACAAG 60.203 61.111 0.73 0.00 0.00 3.16
3315 3836 3.670377 GCAACACCCCGGACAAGC 61.670 66.667 0.73 0.00 0.00 4.01
3316 3837 2.113139 CAACACCCCGGACAAGCT 59.887 61.111 0.73 0.00 0.00 3.74
3320 3841 0.907704 ACACCCCGGACAAGCTATCA 60.908 55.000 0.73 0.00 0.00 2.15
3325 3846 2.618045 CCCCGGACAAGCTATCAAACTT 60.618 50.000 0.73 0.00 0.00 2.66
3328 3849 3.125316 CCGGACAAGCTATCAAACTTCAC 59.875 47.826 0.00 0.00 0.00 3.18
3336 3857 3.065925 GCTATCAAACTTCACATCTGGCC 59.934 47.826 0.00 0.00 0.00 5.36
3340 3861 0.251341 AACTTCACATCTGGCCCCAC 60.251 55.000 0.00 0.00 0.00 4.61
3341 3862 1.379916 CTTCACATCTGGCCCCACA 59.620 57.895 0.00 0.00 0.00 4.17
3342 3863 0.962356 CTTCACATCTGGCCCCACAC 60.962 60.000 0.00 0.00 0.00 3.82
3352 3873 1.669440 GCCCCACACGACTAAGACA 59.331 57.895 0.00 0.00 0.00 3.41
3355 3876 2.874457 GCCCCACACGACTAAGACATTT 60.874 50.000 0.00 0.00 0.00 2.32
3356 3877 2.742053 CCCCACACGACTAAGACATTTG 59.258 50.000 0.00 0.00 0.00 2.32
3359 3880 3.679980 CCACACGACTAAGACATTTGAGG 59.320 47.826 0.00 0.00 0.00 3.86
3366 3887 6.424207 ACGACTAAGACATTTGAGGAGAAAAC 59.576 38.462 0.00 0.00 0.00 2.43
3371 3892 7.454260 AAGACATTTGAGGAGAAAACCATAC 57.546 36.000 0.00 0.00 0.00 2.39
3376 3897 2.912956 TGAGGAGAAAACCATACCTGCT 59.087 45.455 0.00 0.00 0.00 4.24
3400 3921 4.563404 GGACCACGAACCCAACAA 57.437 55.556 0.00 0.00 0.00 2.83
3405 3926 0.028374 CCACGAACCCAACAAACGAC 59.972 55.000 0.00 0.00 0.00 4.34
3409 3930 0.382873 GAACCCAACAAACGACCCAC 59.617 55.000 0.00 0.00 0.00 4.61
3416 3937 2.358322 ACAAACGACCCACCATCTTT 57.642 45.000 0.00 0.00 0.00 2.52
3417 3938 2.227194 ACAAACGACCCACCATCTTTC 58.773 47.619 0.00 0.00 0.00 2.62
3424 3945 3.741388 CGACCCACCATCTTTCAGATACC 60.741 52.174 0.00 0.00 32.12 2.73
3436 3957 0.249447 CAGATACCGCCGATGCAGAA 60.249 55.000 0.00 0.00 37.32 3.02
3455 3976 1.366679 ACACAATCTGCATCTGCTCG 58.633 50.000 3.53 0.00 42.66 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 30 8.863086 ACATGGCAAATTCTTATGTAATAGCAT 58.137 29.630 0.00 0.00 30.79 3.79
94 96 3.648339 ATCTGCAGTGCGACAATTTTT 57.352 38.095 14.67 0.00 0.00 1.94
114 116 6.567687 TCCTTGAAAACGCATGAGAATTAA 57.432 33.333 2.50 0.00 0.00 1.40
150 152 3.270877 GGCTTACAATTCTCCATGTCGT 58.729 45.455 0.00 0.00 0.00 4.34
152 154 5.643379 TTTGGCTTACAATTCTCCATGTC 57.357 39.130 0.00 0.00 39.21 3.06
176 178 9.344309 CCATGGCAATTTTCAATATTTTGTTTC 57.656 29.630 0.00 0.00 34.32 2.78
492 494 5.350504 TTTGTTTCAAATGCCTCCTTTGA 57.649 34.783 0.00 0.00 40.02 2.69
500 502 5.584251 TCCTGAAGTTTTTGTTTCAAATGCC 59.416 36.000 0.00 0.00 33.30 4.40
511 513 5.065218 CGGGTCATAGATCCTGAAGTTTTTG 59.935 44.000 0.00 0.00 28.99 2.44
527 529 0.533491 CACGTCCTTTCCGGGTCATA 59.467 55.000 0.00 0.00 0.00 2.15
528 530 1.295423 CACGTCCTTTCCGGGTCAT 59.705 57.895 0.00 0.00 0.00 3.06
531 533 3.109592 TTGCACGTCCTTTCCGGGT 62.110 57.895 0.00 0.00 0.00 5.28
532 534 2.281208 TTGCACGTCCTTTCCGGG 60.281 61.111 0.00 0.00 0.00 5.73
534 536 1.291877 CCTCTTGCACGTCCTTTCCG 61.292 60.000 0.00 0.00 0.00 4.30
540 542 4.681978 ACGGCCTCTTGCACGTCC 62.682 66.667 0.00 0.00 41.08 4.79
627 629 9.950680 CGAATTTGCTATAAAAACCATGATAGT 57.049 29.630 0.00 0.00 0.00 2.12
628 630 9.398170 CCGAATTTGCTATAAAAACCATGATAG 57.602 33.333 0.00 0.00 0.00 2.08
629 631 9.126151 TCCGAATTTGCTATAAAAACCATGATA 57.874 29.630 0.00 0.00 0.00 2.15
630 632 8.006298 TCCGAATTTGCTATAAAAACCATGAT 57.994 30.769 0.00 0.00 0.00 2.45
631 633 7.397892 TCCGAATTTGCTATAAAAACCATGA 57.602 32.000 0.00 0.00 0.00 3.07
632 634 8.379902 GTTTCCGAATTTGCTATAAAAACCATG 58.620 33.333 0.00 0.00 0.00 3.66
633 635 8.311109 AGTTTCCGAATTTGCTATAAAAACCAT 58.689 29.630 0.00 0.00 0.00 3.55
634 636 7.662897 AGTTTCCGAATTTGCTATAAAAACCA 58.337 30.769 0.00 0.00 0.00 3.67
635 637 9.797556 ATAGTTTCCGAATTTGCTATAAAAACC 57.202 29.630 0.00 0.00 0.00 3.27
641 643 9.431887 GGTGATATAGTTTCCGAATTTGCTATA 57.568 33.333 0.00 0.00 0.00 1.31
642 644 8.157476 AGGTGATATAGTTTCCGAATTTGCTAT 58.843 33.333 0.00 0.00 0.00 2.97
643 645 7.441157 CAGGTGATATAGTTTCCGAATTTGCTA 59.559 37.037 0.00 0.00 0.00 3.49
644 646 6.260936 CAGGTGATATAGTTTCCGAATTTGCT 59.739 38.462 0.00 0.00 0.00 3.91
645 647 6.260050 TCAGGTGATATAGTTTCCGAATTTGC 59.740 38.462 0.00 0.00 0.00 3.68
646 648 7.786178 TCAGGTGATATAGTTTCCGAATTTG 57.214 36.000 0.00 0.00 0.00 2.32
647 649 8.047310 ACTTCAGGTGATATAGTTTCCGAATTT 58.953 33.333 0.00 0.00 0.00 1.82
648 650 7.565680 ACTTCAGGTGATATAGTTTCCGAATT 58.434 34.615 0.00 0.00 0.00 2.17
649 651 7.125792 ACTTCAGGTGATATAGTTTCCGAAT 57.874 36.000 0.00 0.00 0.00 3.34
650 652 6.540438 ACTTCAGGTGATATAGTTTCCGAA 57.460 37.500 0.00 0.00 0.00 4.30
651 653 7.649533 TTACTTCAGGTGATATAGTTTCCGA 57.350 36.000 0.00 0.00 0.00 4.55
652 654 8.712285 TTTTACTTCAGGTGATATAGTTTCCG 57.288 34.615 0.00 0.00 0.00 4.30
676 678 2.897326 GGGGGCATAGTTCTGTGTTTTT 59.103 45.455 0.00 0.00 0.00 1.94
677 679 2.525368 GGGGGCATAGTTCTGTGTTTT 58.475 47.619 0.00 0.00 0.00 2.43
678 680 1.613255 CGGGGGCATAGTTCTGTGTTT 60.613 52.381 0.00 0.00 0.00 2.83
679 681 0.035439 CGGGGGCATAGTTCTGTGTT 60.035 55.000 0.00 0.00 0.00 3.32
680 682 1.198759 ACGGGGGCATAGTTCTGTGT 61.199 55.000 0.00 0.00 0.00 3.72
681 683 0.462047 GACGGGGGCATAGTTCTGTG 60.462 60.000 0.00 0.00 0.00 3.66
682 684 1.905512 GACGGGGGCATAGTTCTGT 59.094 57.895 0.00 0.00 0.00 3.41
683 685 1.227263 CGACGGGGGCATAGTTCTG 60.227 63.158 0.00 0.00 0.00 3.02
684 686 2.432300 CCGACGGGGGCATAGTTCT 61.432 63.158 5.81 0.00 0.00 3.01
685 687 2.108362 CCGACGGGGGCATAGTTC 59.892 66.667 5.81 0.00 0.00 3.01
703 705 4.697756 TCTTCGGCCCACGCAAGG 62.698 66.667 0.00 0.00 43.86 3.61
704 706 3.423154 GTCTTCGGCCCACGCAAG 61.423 66.667 0.00 0.00 43.86 4.01
705 707 4.243008 TGTCTTCGGCCCACGCAA 62.243 61.111 0.00 0.00 43.86 4.85
706 708 4.680237 CTGTCTTCGGCCCACGCA 62.680 66.667 0.00 0.00 43.86 5.24
707 709 4.681978 ACTGTCTTCGGCCCACGC 62.682 66.667 0.00 0.00 43.86 5.34
708 710 2.738521 CACTGTCTTCGGCCCACG 60.739 66.667 0.00 0.00 46.11 4.94
709 711 1.668151 GACACTGTCTTCGGCCCAC 60.668 63.158 0.00 0.00 0.00 4.61
710 712 2.741092 GACACTGTCTTCGGCCCA 59.259 61.111 0.00 0.00 0.00 5.36
711 713 2.047179 GGACACTGTCTTCGGCCC 60.047 66.667 9.08 0.00 32.47 5.80
712 714 1.079750 GAGGACACTGTCTTCGGCC 60.080 63.158 9.08 0.00 29.66 6.13
713 715 0.033504 TTGAGGACACTGTCTTCGGC 59.966 55.000 14.65 0.00 40.76 5.54
714 716 2.751166 ATTGAGGACACTGTCTTCGG 57.249 50.000 14.65 0.00 40.76 4.30
715 717 4.810790 ACTAATTGAGGACACTGTCTTCG 58.189 43.478 14.65 4.74 40.76 3.79
716 718 5.992217 ACAACTAATTGAGGACACTGTCTTC 59.008 40.000 13.16 13.16 38.80 2.87
717 719 5.930135 ACAACTAATTGAGGACACTGTCTT 58.070 37.500 9.08 0.89 39.30 3.01
718 720 5.552870 ACAACTAATTGAGGACACTGTCT 57.447 39.130 9.08 0.00 39.30 3.41
719 721 5.049405 CCAACAACTAATTGAGGACACTGTC 60.049 44.000 0.00 0.00 39.30 3.51
720 722 4.821805 CCAACAACTAATTGAGGACACTGT 59.178 41.667 0.00 0.00 39.30 3.55
721 723 4.320494 GCCAACAACTAATTGAGGACACTG 60.320 45.833 4.75 0.00 39.30 3.66
722 724 3.821033 GCCAACAACTAATTGAGGACACT 59.179 43.478 4.75 0.00 39.30 3.55
723 725 3.057526 GGCCAACAACTAATTGAGGACAC 60.058 47.826 0.00 0.00 40.26 3.67
724 726 3.153919 GGCCAACAACTAATTGAGGACA 58.846 45.455 0.00 0.00 40.26 4.02
725 727 2.161609 CGGCCAACAACTAATTGAGGAC 59.838 50.000 2.24 1.14 39.30 3.85
726 728 2.039216 TCGGCCAACAACTAATTGAGGA 59.961 45.455 2.24 0.00 39.30 3.71
727 729 2.432444 TCGGCCAACAACTAATTGAGG 58.568 47.619 2.24 0.00 39.30 3.86
728 730 4.497473 TTTCGGCCAACAACTAATTGAG 57.503 40.909 2.24 0.00 39.30 3.02
729 731 4.261825 CCTTTTCGGCCAACAACTAATTGA 60.262 41.667 2.24 0.00 39.30 2.57
730 732 3.987220 CCTTTTCGGCCAACAACTAATTG 59.013 43.478 2.24 0.00 41.98 2.32
731 733 3.006430 CCCTTTTCGGCCAACAACTAATT 59.994 43.478 2.24 0.00 0.00 1.40
732 734 2.560981 CCCTTTTCGGCCAACAACTAAT 59.439 45.455 2.24 0.00 0.00 1.73
733 735 1.957877 CCCTTTTCGGCCAACAACTAA 59.042 47.619 2.24 0.00 0.00 2.24
734 736 1.611519 CCCTTTTCGGCCAACAACTA 58.388 50.000 2.24 0.00 0.00 2.24
735 737 1.744320 GCCCTTTTCGGCCAACAACT 61.744 55.000 2.24 0.00 43.66 3.16
736 738 1.300620 GCCCTTTTCGGCCAACAAC 60.301 57.895 2.24 0.00 43.66 3.32
737 739 3.133946 GCCCTTTTCGGCCAACAA 58.866 55.556 2.24 0.00 43.66 2.83
745 747 3.178539 GCCGAAGAGCCCTTTTCG 58.821 61.111 12.39 12.39 44.17 3.46
753 755 4.699522 AACCACGGGCCGAAGAGC 62.700 66.667 35.78 0.00 0.00 4.09
754 756 2.742372 CAACCACGGGCCGAAGAG 60.742 66.667 35.78 19.34 0.00 2.85
755 757 3.235481 TCAACCACGGGCCGAAGA 61.235 61.111 35.78 18.50 0.00 2.87
756 758 3.047877 GTCAACCACGGGCCGAAG 61.048 66.667 35.78 24.62 0.00 3.79
757 759 4.973055 CGTCAACCACGGGCCGAA 62.973 66.667 35.78 7.37 45.46 4.30
765 767 0.521735 GCCATTCTTCCGTCAACCAC 59.478 55.000 0.00 0.00 0.00 4.16
766 768 0.400213 AGCCATTCTTCCGTCAACCA 59.600 50.000 0.00 0.00 0.00 3.67
767 769 0.804989 CAGCCATTCTTCCGTCAACC 59.195 55.000 0.00 0.00 0.00 3.77
768 770 1.523758 ACAGCCATTCTTCCGTCAAC 58.476 50.000 0.00 0.00 0.00 3.18
769 771 2.301870 AGTACAGCCATTCTTCCGTCAA 59.698 45.455 0.00 0.00 0.00 3.18
770 772 1.899814 AGTACAGCCATTCTTCCGTCA 59.100 47.619 0.00 0.00 0.00 4.35
771 773 2.271800 CAGTACAGCCATTCTTCCGTC 58.728 52.381 0.00 0.00 0.00 4.79
772 774 1.066143 CCAGTACAGCCATTCTTCCGT 60.066 52.381 0.00 0.00 0.00 4.69
773 775 1.656652 CCAGTACAGCCATTCTTCCG 58.343 55.000 0.00 0.00 0.00 4.30
774 776 2.019156 GCCCAGTACAGCCATTCTTCC 61.019 57.143 0.00 0.00 0.00 3.46
775 777 1.383523 GCCCAGTACAGCCATTCTTC 58.616 55.000 0.00 0.00 0.00 2.87
776 778 3.577389 GCCCAGTACAGCCATTCTT 57.423 52.632 0.00 0.00 0.00 2.52
782 784 2.125106 CTTCGGCCCAGTACAGCC 60.125 66.667 10.65 10.65 46.17 4.85
783 785 1.448013 GTCTTCGGCCCAGTACAGC 60.448 63.158 0.00 0.00 0.00 4.40
784 786 0.108615 CAGTCTTCGGCCCAGTACAG 60.109 60.000 0.00 0.00 0.00 2.74
785 787 1.541310 CCAGTCTTCGGCCCAGTACA 61.541 60.000 0.00 0.00 0.00 2.90
786 788 1.218316 CCAGTCTTCGGCCCAGTAC 59.782 63.158 0.00 0.00 0.00 2.73
787 789 2.656069 GCCAGTCTTCGGCCCAGTA 61.656 63.158 0.00 0.00 44.22 2.74
788 790 4.021925 GCCAGTCTTCGGCCCAGT 62.022 66.667 0.00 0.00 44.22 4.00
796 798 4.821589 CCTCGCGGGCCAGTCTTC 62.822 72.222 6.13 0.00 0.00 2.87
801 803 2.978452 CTTATCACCTCGCGGGCCAG 62.978 65.000 6.13 0.00 39.10 4.85
802 804 3.078196 TTATCACCTCGCGGGCCA 61.078 61.111 6.13 0.00 39.10 5.36
803 805 2.280186 CTTATCACCTCGCGGGCC 60.280 66.667 6.13 0.00 39.10 5.80
804 806 0.743345 AAACTTATCACCTCGCGGGC 60.743 55.000 6.13 0.00 39.10 6.13
805 807 1.664151 GAAAACTTATCACCTCGCGGG 59.336 52.381 6.13 0.59 41.89 6.13
806 808 1.323534 CGAAAACTTATCACCTCGCGG 59.676 52.381 6.13 0.00 0.00 6.46
807 809 2.256174 TCGAAAACTTATCACCTCGCG 58.744 47.619 0.00 0.00 0.00 5.87
808 810 4.859629 ATTCGAAAACTTATCACCTCGC 57.140 40.909 0.00 0.00 0.00 5.03
809 811 5.508224 GCAAATTCGAAAACTTATCACCTCG 59.492 40.000 0.00 0.00 0.00 4.63
810 812 6.612306 AGCAAATTCGAAAACTTATCACCTC 58.388 36.000 0.00 0.00 0.00 3.85
811 813 6.575162 AGCAAATTCGAAAACTTATCACCT 57.425 33.333 0.00 0.00 0.00 4.00
812 814 9.997482 TTATAGCAAATTCGAAAACTTATCACC 57.003 29.630 0.00 0.00 0.00 4.02
861 863 7.778853 AGACATATGCCTCTTTGATTCAGATTT 59.221 33.333 1.58 0.00 0.00 2.17
865 867 5.177142 CGAGACATATGCCTCTTTGATTCAG 59.823 44.000 15.89 0.00 0.00 3.02
878 880 5.348724 TCTCAACAACTTTCGAGACATATGC 59.651 40.000 1.58 0.00 29.71 3.14
879 881 6.951256 TCTCAACAACTTTCGAGACATATG 57.049 37.500 0.00 0.00 29.71 1.78
926 991 7.527084 ACAAACAAAGTAGATTAGCTCGATC 57.473 36.000 0.00 0.00 0.00 3.69
927 992 7.220300 CGTACAAACAAAGTAGATTAGCTCGAT 59.780 37.037 0.00 0.00 0.00 3.59
935 1000 4.391155 TGGCCGTACAAACAAAGTAGATT 58.609 39.130 0.00 0.00 0.00 2.40
1065 1186 2.760385 AGGCCGTCTAGCAGGGAC 60.760 66.667 0.00 2.83 38.54 4.46
1182 1303 1.133823 AGCTGGTGGTTGTTGATGTGA 60.134 47.619 0.00 0.00 0.00 3.58
1227 1348 4.830765 GCGCGGTACATGCCCTCA 62.831 66.667 8.83 0.00 0.00 3.86
1296 1417 2.659244 TTGCCGTTGTCGTCCGTC 60.659 61.111 0.00 0.00 35.01 4.79
1362 1492 2.169789 CAAGCTCGTGATGCGGGAG 61.170 63.158 0.00 0.00 45.67 4.30
1378 1508 3.001514 GCCAGCTCCCCAGATCAA 58.998 61.111 0.00 0.00 0.00 2.57
1645 1781 2.047655 TTTCTTGGCGCCGACGAT 60.048 55.556 23.90 0.00 43.93 3.73
1662 1798 2.203596 ACCGTGGTCTTCCCGACT 60.204 61.111 0.00 0.00 42.44 4.18
1752 1888 4.796231 CCTCCGGCCTTCACGACG 62.796 72.222 0.00 0.00 0.00 5.12
2107 2246 1.229019 AGATCTCCCGGCCGATCAT 60.229 57.895 30.73 12.85 38.75 2.45
2108 2247 2.198703 AGATCTCCCGGCCGATCA 59.801 61.111 30.73 8.78 38.75 2.92
2110 2249 3.620785 GCAGATCTCCCGGCCGAT 61.621 66.667 30.73 12.66 0.00 4.18
2157 2296 3.971702 AGCCCACCAAGCACCCTC 61.972 66.667 0.00 0.00 0.00 4.30
2332 2471 2.094659 CGTCCTGCACGGTGACATC 61.095 63.158 13.29 0.00 45.46 3.06
2539 3059 6.938030 TCAACTGACCCAAATTCTAAATACGT 59.062 34.615 0.00 0.00 0.00 3.57
2575 3095 3.943671 TCCCTCAAACTGTTTCTTCCA 57.056 42.857 2.13 0.00 0.00 3.53
2577 3097 4.461198 TCCTTCCCTCAAACTGTTTCTTC 58.539 43.478 2.13 0.00 0.00 2.87
2586 3106 3.078097 GAGCTCTTTCCTTCCCTCAAAC 58.922 50.000 6.43 0.00 0.00 2.93
2589 3109 0.898320 CGAGCTCTTTCCTTCCCTCA 59.102 55.000 12.85 0.00 0.00 3.86
2590 3110 0.461163 GCGAGCTCTTTCCTTCCCTC 60.461 60.000 12.85 0.00 0.00 4.30
2610 3130 1.280457 GAGCTTCTTCCTTCCCTCCA 58.720 55.000 0.00 0.00 0.00 3.86
2614 3134 0.824759 TAGCGAGCTTCTTCCTTCCC 59.175 55.000 1.86 0.00 0.00 3.97
2624 3144 1.679153 GTAGCCTTCTCTAGCGAGCTT 59.321 52.381 1.86 0.00 37.19 3.74
2645 3165 5.940470 CCACAACCCTAAGATAGATAATGGC 59.060 44.000 0.00 0.00 0.00 4.40
2672 3192 3.655810 CTCTGCCGAGCTCACCACC 62.656 68.421 15.40 0.00 0.00 4.61
2921 3441 3.679502 GGACATCCTTTTCGGCAAATTTG 59.320 43.478 14.03 14.03 0.00 2.32
2922 3442 3.613910 CGGACATCCTTTTCGGCAAATTT 60.614 43.478 0.00 0.00 0.00 1.82
2923 3443 2.094752 CGGACATCCTTTTCGGCAAATT 60.095 45.455 0.00 0.00 0.00 1.82
2924 3444 1.472480 CGGACATCCTTTTCGGCAAAT 59.528 47.619 0.00 0.00 0.00 2.32
2925 3445 0.878416 CGGACATCCTTTTCGGCAAA 59.122 50.000 0.00 0.00 0.00 3.68
2926 3446 0.035598 TCGGACATCCTTTTCGGCAA 59.964 50.000 0.00 0.00 0.00 4.52
2927 3447 0.035598 TTCGGACATCCTTTTCGGCA 59.964 50.000 0.00 0.00 0.00 5.69
2928 3448 0.727398 CTTCGGACATCCTTTTCGGC 59.273 55.000 0.00 0.00 0.00 5.54
2929 3449 0.727398 GCTTCGGACATCCTTTTCGG 59.273 55.000 0.00 0.00 0.00 4.30
2930 3450 1.394917 CTGCTTCGGACATCCTTTTCG 59.605 52.381 0.00 0.00 0.00 3.46
2931 3451 1.131315 GCTGCTTCGGACATCCTTTTC 59.869 52.381 0.00 0.00 0.00 2.29
2932 3452 1.168714 GCTGCTTCGGACATCCTTTT 58.831 50.000 0.00 0.00 0.00 2.27
2933 3453 1.021390 CGCTGCTTCGGACATCCTTT 61.021 55.000 0.00 0.00 0.00 3.11
2934 3454 1.448540 CGCTGCTTCGGACATCCTT 60.449 57.895 0.00 0.00 0.00 3.36
2935 3455 2.185350 CGCTGCTTCGGACATCCT 59.815 61.111 0.00 0.00 0.00 3.24
2943 3463 0.526954 ACCGTATTACCGCTGCTTCG 60.527 55.000 0.00 0.00 0.00 3.79
2944 3464 0.928229 CACCGTATTACCGCTGCTTC 59.072 55.000 0.00 0.00 0.00 3.86
2945 3465 0.461339 CCACCGTATTACCGCTGCTT 60.461 55.000 0.00 0.00 0.00 3.91
2946 3466 1.143183 CCACCGTATTACCGCTGCT 59.857 57.895 0.00 0.00 0.00 4.24
2947 3467 1.153509 ACCACCGTATTACCGCTGC 60.154 57.895 0.00 0.00 0.00 5.25
2948 3468 0.173935 TCACCACCGTATTACCGCTG 59.826 55.000 0.00 0.00 0.00 5.18
2949 3469 0.896923 TTCACCACCGTATTACCGCT 59.103 50.000 0.00 0.00 0.00 5.52
2950 3470 1.724429 TTTCACCACCGTATTACCGC 58.276 50.000 0.00 0.00 0.00 5.68
2951 3471 3.425227 GCTTTTTCACCACCGTATTACCG 60.425 47.826 0.00 0.00 0.00 4.02
2952 3472 3.502979 TGCTTTTTCACCACCGTATTACC 59.497 43.478 0.00 0.00 0.00 2.85
2953 3473 4.453136 TCTGCTTTTTCACCACCGTATTAC 59.547 41.667 0.00 0.00 0.00 1.89
2954 3474 4.643463 TCTGCTTTTTCACCACCGTATTA 58.357 39.130 0.00 0.00 0.00 0.98
2955 3475 3.482436 TCTGCTTTTTCACCACCGTATT 58.518 40.909 0.00 0.00 0.00 1.89
2956 3476 3.074412 CTCTGCTTTTTCACCACCGTAT 58.926 45.455 0.00 0.00 0.00 3.06
2957 3477 2.489971 CTCTGCTTTTTCACCACCGTA 58.510 47.619 0.00 0.00 0.00 4.02
2958 3478 1.308998 CTCTGCTTTTTCACCACCGT 58.691 50.000 0.00 0.00 0.00 4.83
2959 3479 0.040067 GCTCTGCTTTTTCACCACCG 60.040 55.000 0.00 0.00 0.00 4.94
2960 3480 1.032014 TGCTCTGCTTTTTCACCACC 58.968 50.000 0.00 0.00 0.00 4.61
2961 3481 2.099756 ACTTGCTCTGCTTTTTCACCAC 59.900 45.455 0.00 0.00 0.00 4.16
2962 3482 2.099592 CACTTGCTCTGCTTTTTCACCA 59.900 45.455 0.00 0.00 0.00 4.17
2963 3483 2.099756 ACACTTGCTCTGCTTTTTCACC 59.900 45.455 0.00 0.00 0.00 4.02
2964 3484 3.111098 CACACTTGCTCTGCTTTTTCAC 58.889 45.455 0.00 0.00 0.00 3.18
2973 3493 4.184629 GGGTTAGATACACACTTGCTCTG 58.815 47.826 0.00 0.00 0.00 3.35
2982 3502 6.210796 CAACGATATTCGGGTTAGATACACA 58.789 40.000 1.69 0.00 45.59 3.72
2987 3507 3.899360 TCCCAACGATATTCGGGTTAGAT 59.101 43.478 1.69 0.00 45.59 1.98
2989 3509 3.738830 TCCCAACGATATTCGGGTTAG 57.261 47.619 1.69 0.00 45.59 2.34
3000 3520 5.741011 AGTACATACAACATTCCCAACGAT 58.259 37.500 0.00 0.00 0.00 3.73
3060 3581 6.746745 TGTACGTGACTTGTACTATGATCA 57.253 37.500 0.00 0.00 42.09 2.92
3061 3582 9.544314 GATATGTACGTGACTTGTACTATGATC 57.456 37.037 0.00 0.00 42.09 2.92
3062 3583 8.228464 CGATATGTACGTGACTTGTACTATGAT 58.772 37.037 0.00 0.00 42.09 2.45
3064 3585 7.529854 GTCGATATGTACGTGACTTGTACTATG 59.470 40.741 0.00 0.00 42.09 2.23
3065 3586 7.307632 GGTCGATATGTACGTGACTTGTACTAT 60.308 40.741 0.00 1.58 42.09 2.12
3066 3587 6.018751 GGTCGATATGTACGTGACTTGTACTA 60.019 42.308 0.00 0.00 42.09 1.82
3067 3588 5.220739 GGTCGATATGTACGTGACTTGTACT 60.221 44.000 0.00 0.00 42.09 2.73
3068 3589 4.966366 GGTCGATATGTACGTGACTTGTAC 59.034 45.833 0.00 0.00 41.97 2.90
3069 3590 4.877823 AGGTCGATATGTACGTGACTTGTA 59.122 41.667 0.00 0.00 0.00 2.41
3070 3591 3.693085 AGGTCGATATGTACGTGACTTGT 59.307 43.478 0.00 0.00 0.00 3.16
3071 3592 4.280461 GAGGTCGATATGTACGTGACTTG 58.720 47.826 0.00 0.00 0.00 3.16
3073 3594 2.543012 CGAGGTCGATATGTACGTGACT 59.457 50.000 0.00 0.00 43.02 3.41
3074 3595 2.901209 CGAGGTCGATATGTACGTGAC 58.099 52.381 0.00 0.00 43.02 3.67
3076 3597 1.003223 TGCGAGGTCGATATGTACGTG 60.003 52.381 2.94 0.00 43.02 4.49
3077 3598 1.302366 TGCGAGGTCGATATGTACGT 58.698 50.000 2.94 0.00 43.02 3.57
3086 3607 3.719924 TCTTTAAGTTTTGCGAGGTCGA 58.280 40.909 2.94 0.00 43.02 4.20
3088 3609 5.181433 AGGATTCTTTAAGTTTTGCGAGGTC 59.819 40.000 0.00 0.00 0.00 3.85
3090 3611 5.412904 AGAGGATTCTTTAAGTTTTGCGAGG 59.587 40.000 0.00 0.00 0.00 4.63
3093 3614 6.241207 TCAGAGGATTCTTTAAGTTTTGCG 57.759 37.500 0.00 0.00 0.00 4.85
3102 3623 6.931281 CAGTGTCAAGTTCAGAGGATTCTTTA 59.069 38.462 0.00 0.00 0.00 1.85
3103 3624 5.762218 CAGTGTCAAGTTCAGAGGATTCTTT 59.238 40.000 0.00 0.00 0.00 2.52
3117 3638 0.320771 GGCGGATGTCAGTGTCAAGT 60.321 55.000 0.00 0.00 0.00 3.16
3122 3643 2.217038 AGGTGGCGGATGTCAGTGT 61.217 57.895 0.00 0.00 0.00 3.55
3123 3644 1.742880 CAGGTGGCGGATGTCAGTG 60.743 63.158 0.00 0.00 0.00 3.66
3124 3645 2.665000 CAGGTGGCGGATGTCAGT 59.335 61.111 0.00 0.00 0.00 3.41
3125 3646 2.821366 GCAGGTGGCGGATGTCAG 60.821 66.667 0.00 0.00 0.00 3.51
3134 3655 2.042831 GGTGTCAGATGCAGGTGGC 61.043 63.158 0.00 0.00 45.13 5.01
3135 3656 0.957395 GTGGTGTCAGATGCAGGTGG 60.957 60.000 0.00 0.00 0.00 4.61
3136 3657 0.957395 GGTGGTGTCAGATGCAGGTG 60.957 60.000 0.00 0.00 0.00 4.00
3137 3658 1.376466 GGTGGTGTCAGATGCAGGT 59.624 57.895 0.00 0.00 0.00 4.00
3138 3659 0.957395 GTGGTGGTGTCAGATGCAGG 60.957 60.000 0.00 0.00 0.00 4.85
3139 3660 0.250424 TGTGGTGGTGTCAGATGCAG 60.250 55.000 0.00 0.00 0.00 4.41
3140 3661 0.250424 CTGTGGTGGTGTCAGATGCA 60.250 55.000 0.00 0.00 0.00 3.96
3141 3662 0.250467 ACTGTGGTGGTGTCAGATGC 60.250 55.000 0.00 0.00 33.93 3.91
3142 3663 2.300152 ACTACTGTGGTGGTGTCAGATG 59.700 50.000 0.00 0.00 35.83 2.90
3143 3664 2.300152 CACTACTGTGGTGGTGTCAGAT 59.700 50.000 15.63 0.00 45.70 2.90
3144 3665 1.686587 CACTACTGTGGTGGTGTCAGA 59.313 52.381 15.63 0.00 45.70 3.27
3145 3666 2.154854 CACTACTGTGGTGGTGTCAG 57.845 55.000 15.63 0.00 45.70 3.51
3150 3671 0.548989 TTTGGCACTACTGTGGTGGT 59.451 50.000 23.06 0.00 43.97 4.16
3151 3672 1.202758 TCTTTGGCACTACTGTGGTGG 60.203 52.381 23.06 8.44 43.97 4.61
3152 3673 2.254546 TCTTTGGCACTACTGTGGTG 57.745 50.000 18.62 18.62 43.97 4.17
3153 3674 3.290948 TTTCTTTGGCACTACTGTGGT 57.709 42.857 0.00 0.00 43.97 4.16
3154 3675 4.647424 TTTTTCTTTGGCACTACTGTGG 57.353 40.909 0.00 0.00 43.97 4.17
3175 3696 5.047092 GGTGTGAAGATGGTCCATCATTTTT 60.047 40.000 29.57 17.11 42.72 1.94
3176 3697 4.463891 GGTGTGAAGATGGTCCATCATTTT 59.536 41.667 29.57 17.44 42.72 1.82
3177 3698 4.019174 GGTGTGAAGATGGTCCATCATTT 58.981 43.478 29.57 18.10 42.72 2.32
3178 3699 3.624777 GGTGTGAAGATGGTCCATCATT 58.375 45.455 29.57 20.79 42.72 2.57
3179 3700 2.092212 GGGTGTGAAGATGGTCCATCAT 60.092 50.000 29.57 20.58 42.72 2.45
3180 3701 1.281867 GGGTGTGAAGATGGTCCATCA 59.718 52.381 29.57 11.71 42.72 3.07
3181 3702 1.743772 CGGGTGTGAAGATGGTCCATC 60.744 57.143 22.47 22.47 40.80 3.51
3182 3703 0.253044 CGGGTGTGAAGATGGTCCAT 59.747 55.000 3.26 3.26 0.00 3.41
3183 3704 0.834261 TCGGGTGTGAAGATGGTCCA 60.834 55.000 0.00 0.00 0.00 4.02
3184 3705 0.108138 CTCGGGTGTGAAGATGGTCC 60.108 60.000 0.00 0.00 0.00 4.46
3185 3706 0.741221 GCTCGGGTGTGAAGATGGTC 60.741 60.000 0.00 0.00 0.00 4.02
3186 3707 1.194781 AGCTCGGGTGTGAAGATGGT 61.195 55.000 0.00 0.00 0.00 3.55
3187 3708 0.036010 AAGCTCGGGTGTGAAGATGG 60.036 55.000 0.00 0.00 0.00 3.51
3188 3709 1.081892 CAAGCTCGGGTGTGAAGATG 58.918 55.000 0.00 0.00 0.00 2.90
3189 3710 0.976641 TCAAGCTCGGGTGTGAAGAT 59.023 50.000 0.00 0.00 0.00 2.40
3190 3711 0.033504 GTCAAGCTCGGGTGTGAAGA 59.966 55.000 0.00 0.00 0.00 2.87
3213 3734 1.227639 CTGCATATCAGCTGTGGAGC 58.772 55.000 14.67 14.28 46.64 4.70
3232 3753 1.471684 CATCTTGGAGGTCTGCAAAGC 59.528 52.381 6.40 0.00 40.33 3.51
3253 3774 6.223120 GGTAATGATCTTGTTTTTGGCAAGT 58.777 36.000 0.00 0.00 42.67 3.16
3256 3777 4.279671 ACGGTAATGATCTTGTTTTTGGCA 59.720 37.500 0.00 0.00 0.00 4.92
3263 3784 4.992319 TCGTTCAACGGTAATGATCTTGTT 59.008 37.500 10.69 0.00 42.81 2.83
3266 3787 5.872617 TGATTCGTTCAACGGTAATGATCTT 59.127 36.000 10.69 0.00 42.81 2.40
3268 3789 5.518847 TCTGATTCGTTCAACGGTAATGATC 59.481 40.000 10.69 5.47 42.81 2.92
3270 3791 4.624024 GTCTGATTCGTTCAACGGTAATGA 59.376 41.667 10.69 1.13 42.81 2.57
3277 3798 0.713883 CCGGTCTGATTCGTTCAACG 59.286 55.000 2.64 2.64 44.19 4.10
3287 3808 1.302511 GGTGTTGCACCGGTCTGAT 60.303 57.895 2.59 0.00 44.95 2.90
3297 3818 2.203280 CTTGTCCGGGGTGTTGCA 60.203 61.111 0.00 0.00 0.00 4.08
3313 3834 3.944015 GCCAGATGTGAAGTTTGATAGCT 59.056 43.478 0.00 0.00 0.00 3.32
3314 3835 3.065925 GGCCAGATGTGAAGTTTGATAGC 59.934 47.826 0.00 0.00 0.00 2.97
3315 3836 3.629398 GGGCCAGATGTGAAGTTTGATAG 59.371 47.826 4.39 0.00 0.00 2.08
3316 3837 3.620488 GGGCCAGATGTGAAGTTTGATA 58.380 45.455 4.39 0.00 0.00 2.15
3320 3841 0.482446 TGGGGCCAGATGTGAAGTTT 59.518 50.000 4.39 0.00 0.00 2.66
3325 3846 2.756400 GTGTGGGGCCAGATGTGA 59.244 61.111 4.39 0.00 0.00 3.58
3328 3849 1.613317 TAGTCGTGTGGGGCCAGATG 61.613 60.000 4.39 0.00 0.00 2.90
3336 3857 3.659786 TCAAATGTCTTAGTCGTGTGGG 58.340 45.455 0.00 0.00 0.00 4.61
3340 3861 5.060662 TCTCCTCAAATGTCTTAGTCGTG 57.939 43.478 0.00 0.00 0.00 4.35
3341 3862 5.723672 TTCTCCTCAAATGTCTTAGTCGT 57.276 39.130 0.00 0.00 0.00 4.34
3342 3863 6.128526 GGTTTTCTCCTCAAATGTCTTAGTCG 60.129 42.308 0.00 0.00 0.00 4.18
3352 3873 4.706962 GCAGGTATGGTTTTCTCCTCAAAT 59.293 41.667 0.00 0.00 0.00 2.32
3355 3876 2.912956 AGCAGGTATGGTTTTCTCCTCA 59.087 45.455 0.00 0.00 31.66 3.86
3356 3877 3.636153 AGCAGGTATGGTTTTCTCCTC 57.364 47.619 0.00 0.00 31.66 3.71
3359 3880 4.816925 GTGGATAGCAGGTATGGTTTTCTC 59.183 45.833 0.00 0.00 38.36 2.87
3366 3887 1.000955 GTCCGTGGATAGCAGGTATGG 59.999 57.143 0.00 0.00 0.00 2.74
3371 3892 1.144057 GTGGTCCGTGGATAGCAGG 59.856 63.158 0.00 0.00 0.00 4.85
3376 3897 1.606885 GGGTTCGTGGTCCGTGGATA 61.607 60.000 0.00 0.00 37.94 2.59
3390 3911 0.382873 GTGGGTCGTTTGTTGGGTTC 59.617 55.000 0.00 0.00 0.00 3.62
3397 3918 2.227194 GAAAGATGGTGGGTCGTTTGT 58.773 47.619 0.00 0.00 0.00 2.83
3400 3921 1.697432 TCTGAAAGATGGTGGGTCGTT 59.303 47.619 0.00 0.00 38.67 3.85
3416 3937 1.106944 TCTGCATCGGCGGTATCTGA 61.107 55.000 7.21 1.95 46.81 3.27
3417 3938 0.249447 TTCTGCATCGGCGGTATCTG 60.249 55.000 7.21 0.00 46.81 2.90
3424 3945 0.247814 GATTGTGTTCTGCATCGGCG 60.248 55.000 0.00 0.00 45.35 6.46
3436 3957 1.338484 ACGAGCAGATGCAGATTGTGT 60.338 47.619 7.68 0.00 45.16 3.72
3445 3966 1.202580 AGGTAATCCACGAGCAGATGC 60.203 52.381 0.00 0.00 37.49 3.91



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.