Multiple sequence alignment - TraesCS7B01G322800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G322800 chr7B 100.000 3479 0 0 1 3479 573258541 573262019 0.000000e+00 6425.0
1 TraesCS7B01G322800 chr7B 88.148 135 11 5 2849 2982 573261260 573261390 4.650000e-34 156.0
2 TraesCS7B01G322800 chr7B 88.148 135 11 5 2720 2850 573261389 573261522 4.650000e-34 156.0
3 TraesCS7B01G322800 chr7D 93.098 1333 50 12 2153 3479 532898837 532900133 0.000000e+00 1914.0
4 TraesCS7B01G322800 chr7D 91.572 1056 49 12 2429 3479 533432131 533433151 0.000000e+00 1421.0
5 TraesCS7B01G322800 chr7D 91.465 703 38 8 838 1530 532898054 532898744 0.000000e+00 946.0
6 TraesCS7B01G322800 chr7D 93.499 523 26 4 989 1507 533429986 533430504 0.000000e+00 771.0
7 TraesCS7B01G322800 chr7D 93.092 304 9 9 2142 2434 533430553 533430855 5.330000e-118 435.0
8 TraesCS7B01G322800 chr7D 85.321 218 17 6 774 984 533428196 533428405 9.780000e-51 211.0
9 TraesCS7B01G322800 chr7D 88.235 136 11 4 2848 2982 532899374 532899505 1.290000e-34 158.0
10 TraesCS7B01G322800 chr7D 87.500 136 12 4 2848 2982 533432405 533432536 6.010000e-33 152.0
11 TraesCS7B01G322800 chr7D 85.821 134 15 3 2720 2850 532899504 532899636 4.680000e-29 139.0
12 TraesCS7B01G322800 chr7D 85.714 91 10 3 2720 2807 533432535 533432625 3.700000e-15 93.5
13 TraesCS7B01G322800 chr7D 92.683 41 3 0 2814 2854 533432616 533432656 3.750000e-05 60.2
14 TraesCS7B01G322800 chr7A 91.275 1341 65 19 2153 3479 612990548 612991850 0.000000e+00 1781.0
15 TraesCS7B01G322800 chr7A 94.384 641 23 6 901 1530 612989812 612990450 0.000000e+00 972.0
16 TraesCS7B01G322800 chr7A 83.480 454 44 15 1533 1959 184333417 184333866 9.050000e-106 394.0
17 TraesCS7B01G322800 chr7A 79.693 586 70 25 1533 2074 181707967 181708547 9.110000e-101 377.0
18 TraesCS7B01G322800 chr7A 79.963 544 66 29 320 859 612989299 612989803 9.180000e-96 361.0
19 TraesCS7B01G322800 chr7A 79.648 398 52 22 1533 1903 714581678 714582073 3.440000e-65 259.0
20 TraesCS7B01G322800 chr7A 84.921 126 19 0 3346 3471 12115567 12115692 1.010000e-25 128.0
21 TraesCS7B01G322800 chr7A 86.517 89 9 2 2720 2807 612991240 612991326 1.030000e-15 95.3
22 TraesCS7B01G322800 chr6A 82.676 583 53 20 1535 2074 48087262 48087839 1.130000e-129 473.0
23 TraesCS7B01G322800 chr6A 92.308 78 6 0 1998 2075 141374790 141374713 1.020000e-20 111.0
24 TraesCS7B01G322800 chr5D 80.392 663 82 29 2847 3475 398907833 398908481 8.800000e-126 460.0
25 TraesCS7B01G322800 chr5D 82.024 573 61 23 1533 2069 72209435 72210001 1.900000e-122 449.0
26 TraesCS7B01G322800 chr1D 82.211 579 55 19 1533 2078 483883246 483883809 4.090000e-124 455.0
27 TraesCS7B01G322800 chr5A 81.353 606 63 17 1520 2081 475516597 475515998 6.850000e-122 448.0
28 TraesCS7B01G322800 chr5A 81.552 580 59 16 1529 2074 436606621 436606056 5.330000e-118 435.0
29 TraesCS7B01G322800 chr5A 81.274 518 57 18 1533 2016 606907978 606907467 1.960000e-102 383.0
30 TraesCS7B01G322800 chr1B 81.431 587 63 21 1530 2074 30737177 30737759 4.120000e-119 438.0
31 TraesCS7B01G322800 chr2B 81.399 586 63 21 1533 2076 757274954 757275535 1.480000e-118 436.0
32 TraesCS7B01G322800 chr2B 78.596 285 29 17 1533 1789 701771344 701771624 3.590000e-35 159.0
33 TraesCS7B01G322800 chr3A 81.122 588 65 21 1529 2074 42368688 42369271 2.480000e-116 429.0
34 TraesCS7B01G322800 chr3A 92.208 77 6 0 1998 2074 686550784 686550860 3.670000e-20 110.0
35 TraesCS7B01G322800 chr2D 84.768 453 37 20 1535 1959 633597895 633597447 3.210000e-115 425.0
36 TraesCS7B01G322800 chr4A 83.913 460 48 15 1625 2074 7751183 7750740 1.930000e-112 416.0
37 TraesCS7B01G322800 chr4A 76.562 576 87 30 1535 2075 634344871 634344309 4.420000e-69 272.0
38 TraesCS7B01G322800 chr4A 88.393 112 10 3 1964 2074 614874454 614874563 7.840000e-27 132.0
39 TraesCS7B01G322800 chr2A 80.756 582 68 29 1535 2074 3514505 3515084 6.950000e-112 414.0
40 TraesCS7B01G322800 chr2A 82.080 452 63 10 1627 2074 25134818 25135255 1.530000e-98 370.0
41 TraesCS7B01G322800 chr2A 78.229 542 83 23 1560 2074 674197906 674198439 7.250000e-82 315.0
42 TraesCS7B01G322800 chr1A 81.129 567 64 16 1535 2064 506472664 506473224 6.950000e-112 414.0
43 TraesCS7B01G322800 chr5B 84.173 417 50 12 3069 3475 479202869 479203279 1.170000e-104 390.0
44 TraesCS7B01G322800 chr5B 80.000 205 25 10 1886 2075 208443524 208443727 1.680000e-28 137.0
45 TraesCS7B01G322800 chr3D 79.588 583 65 37 1533 2069 30421604 30421030 5.490000e-98 368.0
46 TraesCS7B01G322800 chr4B 79.902 204 25 10 1886 2074 251666285 251666083 6.060000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G322800 chr7B 573258541 573262019 3478 False 2245.666667 6425 92.098667 1 3479 3 chr7B.!!$F1 3478
1 TraesCS7B01G322800 chr7D 532898054 532900133 2079 False 789.250000 1914 89.654750 838 3479 4 chr7D.!!$F1 2641
2 TraesCS7B01G322800 chr7D 533428196 533433151 4955 False 449.100000 1421 89.911571 774 3479 7 chr7D.!!$F2 2705
3 TraesCS7B01G322800 chr7A 612989299 612991850 2551 False 802.325000 1781 88.034750 320 3479 4 chr7A.!!$F5 3159
4 TraesCS7B01G322800 chr7A 181707967 181708547 580 False 377.000000 377 79.693000 1533 2074 1 chr7A.!!$F2 541
5 TraesCS7B01G322800 chr6A 48087262 48087839 577 False 473.000000 473 82.676000 1535 2074 1 chr6A.!!$F1 539
6 TraesCS7B01G322800 chr5D 398907833 398908481 648 False 460.000000 460 80.392000 2847 3475 1 chr5D.!!$F2 628
7 TraesCS7B01G322800 chr5D 72209435 72210001 566 False 449.000000 449 82.024000 1533 2069 1 chr5D.!!$F1 536
8 TraesCS7B01G322800 chr1D 483883246 483883809 563 False 455.000000 455 82.211000 1533 2078 1 chr1D.!!$F1 545
9 TraesCS7B01G322800 chr5A 475515998 475516597 599 True 448.000000 448 81.353000 1520 2081 1 chr5A.!!$R2 561
10 TraesCS7B01G322800 chr5A 436606056 436606621 565 True 435.000000 435 81.552000 1529 2074 1 chr5A.!!$R1 545
11 TraesCS7B01G322800 chr5A 606907467 606907978 511 True 383.000000 383 81.274000 1533 2016 1 chr5A.!!$R3 483
12 TraesCS7B01G322800 chr1B 30737177 30737759 582 False 438.000000 438 81.431000 1530 2074 1 chr1B.!!$F1 544
13 TraesCS7B01G322800 chr2B 757274954 757275535 581 False 436.000000 436 81.399000 1533 2076 1 chr2B.!!$F2 543
14 TraesCS7B01G322800 chr3A 42368688 42369271 583 False 429.000000 429 81.122000 1529 2074 1 chr3A.!!$F1 545
15 TraesCS7B01G322800 chr4A 634344309 634344871 562 True 272.000000 272 76.562000 1535 2075 1 chr4A.!!$R2 540
16 TraesCS7B01G322800 chr2A 3514505 3515084 579 False 414.000000 414 80.756000 1535 2074 1 chr2A.!!$F1 539
17 TraesCS7B01G322800 chr2A 674197906 674198439 533 False 315.000000 315 78.229000 1560 2074 1 chr2A.!!$F3 514
18 TraesCS7B01G322800 chr1A 506472664 506473224 560 False 414.000000 414 81.129000 1535 2064 1 chr1A.!!$F1 529
19 TraesCS7B01G322800 chr3D 30421030 30421604 574 True 368.000000 368 79.588000 1533 2069 1 chr3D.!!$R1 536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
222 223 0.031585 TGGTCTCGTGTTCCGAAGTG 59.968 55.0 0.00 0.0 46.75 3.16 F
261 262 0.177604 ACGTTGGTTGTACCCGACAA 59.822 50.0 8.70 0.0 46.03 3.18 F
1905 3543 0.249573 TTCACGTCAAACGAGGGACC 60.250 55.0 6.48 0.0 46.05 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2089 3745 0.038526 GAACGATCCTGTGACGGTGT 60.039 55.000 0.00 0.0 0.0 4.16 R
2172 3858 0.608856 CACATTGTACCCCTGCAGCA 60.609 55.000 8.66 0.0 0.0 4.41 R
3403 6436 1.068417 TATCATGTACCCGCACGCC 59.932 57.895 0.00 0.0 0.0 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.722194 CATTGGTAACGTTGTTGATCCTG 58.278 43.478 11.99 0.00 42.51 3.86
23 24 3.755112 TGGTAACGTTGTTGATCCTGA 57.245 42.857 11.99 0.00 42.51 3.86
24 25 4.280436 TGGTAACGTTGTTGATCCTGAT 57.720 40.909 11.99 0.00 42.51 2.90
25 26 4.000325 TGGTAACGTTGTTGATCCTGATG 59.000 43.478 11.99 0.00 42.51 3.07
26 27 3.374058 GGTAACGTTGTTGATCCTGATGG 59.626 47.826 11.99 0.00 0.00 3.51
27 28 7.259674 TGGTAACGTTGTTGATCCTGATGGA 62.260 44.000 11.99 0.00 44.18 3.41
28 29 2.699954 ACGTTGTTGATCCTGATGGAC 58.300 47.619 0.00 0.00 46.51 4.02
29 30 1.660607 CGTTGTTGATCCTGATGGACG 59.339 52.381 0.00 0.00 46.51 4.79
30 31 2.699954 GTTGTTGATCCTGATGGACGT 58.300 47.619 0.00 0.00 46.51 4.34
31 32 2.385013 TGTTGATCCTGATGGACGTG 57.615 50.000 0.00 0.00 46.51 4.49
32 33 1.009829 GTTGATCCTGATGGACGTGC 58.990 55.000 0.00 0.00 46.51 5.34
33 34 0.904649 TTGATCCTGATGGACGTGCT 59.095 50.000 8.99 0.00 46.51 4.40
34 35 0.461548 TGATCCTGATGGACGTGCTC 59.538 55.000 8.99 4.15 46.51 4.26
35 36 0.749649 GATCCTGATGGACGTGCTCT 59.250 55.000 8.99 0.00 46.51 4.09
36 37 0.463204 ATCCTGATGGACGTGCTCTG 59.537 55.000 8.99 7.40 46.51 3.35
37 38 0.611896 TCCTGATGGACGTGCTCTGA 60.612 55.000 8.99 2.67 37.46 3.27
38 39 0.463204 CCTGATGGACGTGCTCTGAT 59.537 55.000 8.99 0.00 34.57 2.90
39 40 1.537776 CCTGATGGACGTGCTCTGATC 60.538 57.143 8.99 3.34 34.57 2.92
40 41 1.408340 CTGATGGACGTGCTCTGATCT 59.592 52.381 8.99 0.00 0.00 2.75
41 42 2.620585 CTGATGGACGTGCTCTGATCTA 59.379 50.000 8.99 0.00 0.00 1.98
42 43 2.359214 TGATGGACGTGCTCTGATCTAC 59.641 50.000 8.99 0.00 0.00 2.59
43 44 2.130272 TGGACGTGCTCTGATCTACT 57.870 50.000 8.99 0.00 0.00 2.57
44 45 2.017782 TGGACGTGCTCTGATCTACTC 58.982 52.381 8.99 0.00 0.00 2.59
45 46 1.335496 GGACGTGCTCTGATCTACTCC 59.665 57.143 0.00 0.00 0.00 3.85
46 47 2.017782 GACGTGCTCTGATCTACTCCA 58.982 52.381 0.00 0.00 0.00 3.86
47 48 1.746220 ACGTGCTCTGATCTACTCCAC 59.254 52.381 0.00 0.00 0.00 4.02
48 49 1.745653 CGTGCTCTGATCTACTCCACA 59.254 52.381 0.00 0.00 0.00 4.17
49 50 2.360483 CGTGCTCTGATCTACTCCACAT 59.640 50.000 0.00 0.00 0.00 3.21
50 51 3.565902 CGTGCTCTGATCTACTCCACATA 59.434 47.826 0.00 0.00 0.00 2.29
51 52 4.036852 CGTGCTCTGATCTACTCCACATAA 59.963 45.833 0.00 0.00 0.00 1.90
52 53 5.450550 CGTGCTCTGATCTACTCCACATAAA 60.451 44.000 0.00 0.00 0.00 1.40
53 54 5.751028 GTGCTCTGATCTACTCCACATAAAC 59.249 44.000 0.00 0.00 0.00 2.01
54 55 5.422012 TGCTCTGATCTACTCCACATAAACA 59.578 40.000 0.00 0.00 0.00 2.83
55 56 6.098838 TGCTCTGATCTACTCCACATAAACAT 59.901 38.462 0.00 0.00 0.00 2.71
56 57 6.423302 GCTCTGATCTACTCCACATAAACATG 59.577 42.308 0.00 0.00 0.00 3.21
57 58 6.820335 TCTGATCTACTCCACATAAACATGG 58.180 40.000 0.00 0.00 0.00 3.66
58 59 6.384015 TCTGATCTACTCCACATAAACATGGT 59.616 38.462 0.00 0.00 0.00 3.55
59 60 7.563556 TCTGATCTACTCCACATAAACATGGTA 59.436 37.037 0.00 0.00 0.00 3.25
60 61 8.262601 TGATCTACTCCACATAAACATGGTAT 57.737 34.615 0.00 0.00 0.00 2.73
61 62 8.150296 TGATCTACTCCACATAAACATGGTATG 58.850 37.037 14.08 14.08 35.47 2.39
75 76 5.841810 ACATGGTATGTTTTGTTCTTGTGG 58.158 37.500 0.00 0.00 41.63 4.17
76 77 5.362430 ACATGGTATGTTTTGTTCTTGTGGT 59.638 36.000 0.00 0.00 41.63 4.16
77 78 5.255710 TGGTATGTTTTGTTCTTGTGGTG 57.744 39.130 0.00 0.00 0.00 4.17
78 79 4.950475 TGGTATGTTTTGTTCTTGTGGTGA 59.050 37.500 0.00 0.00 0.00 4.02
79 80 5.596361 TGGTATGTTTTGTTCTTGTGGTGAT 59.404 36.000 0.00 0.00 0.00 3.06
80 81 5.920273 GGTATGTTTTGTTCTTGTGGTGATG 59.080 40.000 0.00 0.00 0.00 3.07
81 82 5.596836 ATGTTTTGTTCTTGTGGTGATGT 57.403 34.783 0.00 0.00 0.00 3.06
82 83 4.992688 TGTTTTGTTCTTGTGGTGATGTC 58.007 39.130 0.00 0.00 0.00 3.06
83 84 4.142271 TGTTTTGTTCTTGTGGTGATGTCC 60.142 41.667 0.00 0.00 0.00 4.02
84 85 3.289407 TTGTTCTTGTGGTGATGTCCA 57.711 42.857 0.00 0.00 34.85 4.02
85 86 3.507162 TGTTCTTGTGGTGATGTCCAT 57.493 42.857 0.00 0.00 39.81 3.41
86 87 3.148412 TGTTCTTGTGGTGATGTCCATG 58.852 45.455 0.00 0.00 39.81 3.66
87 88 3.149196 GTTCTTGTGGTGATGTCCATGT 58.851 45.455 0.00 0.00 39.81 3.21
88 89 3.507162 TCTTGTGGTGATGTCCATGTT 57.493 42.857 0.00 0.00 39.81 2.71
89 90 4.632327 TCTTGTGGTGATGTCCATGTTA 57.368 40.909 0.00 0.00 39.81 2.41
90 91 5.178096 TCTTGTGGTGATGTCCATGTTAT 57.822 39.130 0.00 0.00 39.81 1.89
91 92 4.943093 TCTTGTGGTGATGTCCATGTTATG 59.057 41.667 0.00 0.00 39.81 1.90
107 108 6.421405 CATGTTATGGATGTGAATGTGTACG 58.579 40.000 0.00 0.00 0.00 3.67
108 109 4.873259 TGTTATGGATGTGAATGTGTACGG 59.127 41.667 0.00 0.00 0.00 4.02
109 110 1.732941 TGGATGTGAATGTGTACGGC 58.267 50.000 0.00 0.00 0.00 5.68
110 111 1.277842 TGGATGTGAATGTGTACGGCT 59.722 47.619 0.00 0.00 0.00 5.52
111 112 1.665679 GGATGTGAATGTGTACGGCTG 59.334 52.381 0.00 0.00 0.00 4.85
112 113 2.346803 GATGTGAATGTGTACGGCTGT 58.653 47.619 2.42 2.42 0.00 4.40
113 114 1.790755 TGTGAATGTGTACGGCTGTC 58.209 50.000 0.00 0.00 0.00 3.51
114 115 1.069358 TGTGAATGTGTACGGCTGTCA 59.931 47.619 0.00 0.00 0.00 3.58
115 116 2.139917 GTGAATGTGTACGGCTGTCAA 58.860 47.619 0.00 0.00 0.00 3.18
116 117 2.157668 GTGAATGTGTACGGCTGTCAAG 59.842 50.000 0.00 0.00 0.00 3.02
117 118 1.732259 GAATGTGTACGGCTGTCAAGG 59.268 52.381 0.00 0.00 0.00 3.61
118 119 0.673644 ATGTGTACGGCTGTCAAGGC 60.674 55.000 0.00 0.00 45.41 4.35
124 125 3.414700 GGCTGTCAAGGCGTCACG 61.415 66.667 0.00 0.00 39.48 4.35
125 126 2.355837 GCTGTCAAGGCGTCACGA 60.356 61.111 0.00 0.00 0.00 4.35
126 127 1.738099 GCTGTCAAGGCGTCACGAT 60.738 57.895 0.00 0.00 0.00 3.73
127 128 1.687494 GCTGTCAAGGCGTCACGATC 61.687 60.000 0.00 0.00 0.00 3.69
128 129 0.109086 CTGTCAAGGCGTCACGATCT 60.109 55.000 0.00 0.00 0.00 2.75
129 130 0.388520 TGTCAAGGCGTCACGATCTG 60.389 55.000 0.00 0.00 0.00 2.90
130 131 1.078759 GTCAAGGCGTCACGATCTGG 61.079 60.000 0.00 0.00 0.00 3.86
131 132 2.125512 AAGGCGTCACGATCTGGC 60.126 61.111 0.00 0.00 0.00 4.85
132 133 2.650116 AAGGCGTCACGATCTGGCT 61.650 57.895 0.00 0.00 39.09 4.75
133 134 2.125512 GGCGTCACGATCTGGCTT 60.126 61.111 0.00 0.00 0.00 4.35
134 135 2.456119 GGCGTCACGATCTGGCTTG 61.456 63.158 0.00 0.00 0.00 4.01
135 136 3.084579 CGTCACGATCTGGCTTGC 58.915 61.111 0.00 0.00 0.00 4.01
136 137 1.737735 CGTCACGATCTGGCTTGCA 60.738 57.895 0.00 0.00 0.00 4.08
137 138 1.690283 CGTCACGATCTGGCTTGCAG 61.690 60.000 0.00 0.00 0.00 4.41
138 139 1.742880 TCACGATCTGGCTTGCAGC 60.743 57.895 0.00 0.11 41.46 5.25
139 140 2.816958 ACGATCTGGCTTGCAGCG 60.817 61.111 0.00 0.00 43.62 5.18
140 141 3.570638 CGATCTGGCTTGCAGCGG 61.571 66.667 0.00 0.00 43.62 5.52
141 142 3.885521 GATCTGGCTTGCAGCGGC 61.886 66.667 0.31 0.31 43.62 6.53
147 148 4.451652 GCTTGCAGCGGCGACTTC 62.452 66.667 12.98 2.17 45.35 3.01
148 149 2.740055 CTTGCAGCGGCGACTTCT 60.740 61.111 12.98 0.00 45.35 2.85
149 150 2.280797 TTGCAGCGGCGACTTCTT 60.281 55.556 12.98 0.00 45.35 2.52
150 151 2.233007 CTTGCAGCGGCGACTTCTTC 62.233 60.000 12.98 0.00 45.35 2.87
151 152 2.738521 GCAGCGGCGACTTCTTCA 60.739 61.111 12.98 0.00 0.00 3.02
152 153 2.103042 GCAGCGGCGACTTCTTCAT 61.103 57.895 12.98 0.00 0.00 2.57
153 154 1.639298 GCAGCGGCGACTTCTTCATT 61.639 55.000 12.98 0.00 0.00 2.57
154 155 0.095935 CAGCGGCGACTTCTTCATTG 59.904 55.000 12.98 0.00 0.00 2.82
155 156 0.037326 AGCGGCGACTTCTTCATTGA 60.037 50.000 12.98 0.00 0.00 2.57
156 157 0.796312 GCGGCGACTTCTTCATTGAA 59.204 50.000 12.98 0.00 0.00 2.69
157 158 1.196808 GCGGCGACTTCTTCATTGAAA 59.803 47.619 12.98 0.00 0.00 2.69
158 159 2.350388 GCGGCGACTTCTTCATTGAAAA 60.350 45.455 12.98 0.00 0.00 2.29
159 160 3.670627 GCGGCGACTTCTTCATTGAAAAT 60.671 43.478 12.98 0.00 0.00 1.82
160 161 3.848019 CGGCGACTTCTTCATTGAAAATG 59.152 43.478 0.00 0.00 0.00 2.32
161 162 4.168760 GGCGACTTCTTCATTGAAAATGG 58.831 43.478 0.01 0.00 0.00 3.16
162 163 4.168760 GCGACTTCTTCATTGAAAATGGG 58.831 43.478 0.01 0.00 0.00 4.00
163 164 4.737054 CGACTTCTTCATTGAAAATGGGG 58.263 43.478 0.01 0.00 0.00 4.96
164 165 4.218417 CGACTTCTTCATTGAAAATGGGGT 59.782 41.667 0.01 0.00 0.00 4.95
165 166 5.619981 CGACTTCTTCATTGAAAATGGGGTC 60.620 44.000 0.01 3.51 0.00 4.46
166 167 4.218417 ACTTCTTCATTGAAAATGGGGTCG 59.782 41.667 0.01 0.00 0.00 4.79
167 168 4.027674 TCTTCATTGAAAATGGGGTCGA 57.972 40.909 0.01 0.00 0.00 4.20
168 169 4.599041 TCTTCATTGAAAATGGGGTCGAT 58.401 39.130 0.01 0.00 0.00 3.59
169 170 5.750524 TCTTCATTGAAAATGGGGTCGATA 58.249 37.500 0.01 0.00 0.00 2.92
170 171 5.822519 TCTTCATTGAAAATGGGGTCGATAG 59.177 40.000 0.01 0.00 0.00 2.08
171 172 5.110814 TCATTGAAAATGGGGTCGATAGT 57.889 39.130 0.00 0.00 37.40 2.12
172 173 6.241882 TCATTGAAAATGGGGTCGATAGTA 57.758 37.500 0.00 0.00 37.40 1.82
173 174 6.053005 TCATTGAAAATGGGGTCGATAGTAC 58.947 40.000 0.00 0.00 37.40 2.73
174 175 5.423704 TTGAAAATGGGGTCGATAGTACA 57.576 39.130 0.00 0.00 37.40 2.90
175 176 5.623956 TGAAAATGGGGTCGATAGTACAT 57.376 39.130 0.00 0.00 37.40 2.29
176 177 5.364778 TGAAAATGGGGTCGATAGTACATG 58.635 41.667 0.00 0.00 37.40 3.21
177 178 4.351874 AAATGGGGTCGATAGTACATGG 57.648 45.455 0.00 0.00 37.40 3.66
178 179 2.759839 TGGGGTCGATAGTACATGGA 57.240 50.000 0.00 0.00 37.40 3.41
179 180 3.035055 TGGGGTCGATAGTACATGGAA 57.965 47.619 0.00 0.00 37.40 3.53
180 181 2.963101 TGGGGTCGATAGTACATGGAAG 59.037 50.000 0.00 0.00 37.40 3.46
181 182 2.963782 GGGGTCGATAGTACATGGAAGT 59.036 50.000 0.00 0.00 37.40 3.01
182 183 3.387050 GGGGTCGATAGTACATGGAAGTT 59.613 47.826 0.00 0.00 37.40 2.66
183 184 4.141779 GGGGTCGATAGTACATGGAAGTTT 60.142 45.833 0.00 0.00 37.40 2.66
184 185 4.809426 GGGTCGATAGTACATGGAAGTTTG 59.191 45.833 0.00 0.00 37.40 2.93
185 186 4.809426 GGTCGATAGTACATGGAAGTTTGG 59.191 45.833 0.00 0.00 37.40 3.28
186 187 5.416947 GTCGATAGTACATGGAAGTTTGGT 58.583 41.667 0.00 0.00 37.40 3.67
187 188 5.291128 GTCGATAGTACATGGAAGTTTGGTG 59.709 44.000 0.00 0.00 37.40 4.17
188 189 4.570772 CGATAGTACATGGAAGTTTGGTGG 59.429 45.833 0.00 0.00 0.00 4.61
189 190 3.876309 AGTACATGGAAGTTTGGTGGT 57.124 42.857 0.00 0.00 0.00 4.16
190 191 3.486383 AGTACATGGAAGTTTGGTGGTG 58.514 45.455 0.00 0.00 0.00 4.17
191 192 1.039856 ACATGGAAGTTTGGTGGTGC 58.960 50.000 0.00 0.00 0.00 5.01
192 193 1.331214 CATGGAAGTTTGGTGGTGCT 58.669 50.000 0.00 0.00 0.00 4.40
193 194 1.688197 CATGGAAGTTTGGTGGTGCTT 59.312 47.619 0.00 0.00 0.00 3.91
194 195 1.859302 TGGAAGTTTGGTGGTGCTTT 58.141 45.000 0.00 0.00 0.00 3.51
195 196 2.183679 TGGAAGTTTGGTGGTGCTTTT 58.816 42.857 0.00 0.00 0.00 2.27
196 197 3.366396 TGGAAGTTTGGTGGTGCTTTTA 58.634 40.909 0.00 0.00 0.00 1.52
197 198 3.769844 TGGAAGTTTGGTGGTGCTTTTAA 59.230 39.130 0.00 0.00 0.00 1.52
198 199 4.142049 TGGAAGTTTGGTGGTGCTTTTAAG 60.142 41.667 0.00 0.00 0.00 1.85
209 210 2.179949 GCTTTTAAGCGCATGGTCTC 57.820 50.000 11.47 0.00 42.88 3.36
210 211 1.529826 GCTTTTAAGCGCATGGTCTCG 60.530 52.381 11.47 0.00 42.88 4.04
211 212 1.732259 CTTTTAAGCGCATGGTCTCGT 59.268 47.619 11.47 0.00 0.00 4.18
212 213 1.075542 TTTAAGCGCATGGTCTCGTG 58.924 50.000 11.47 0.00 0.00 4.35
213 214 0.037697 TTAAGCGCATGGTCTCGTGT 60.038 50.000 11.47 0.00 32.65 4.49
214 215 0.037697 TAAGCGCATGGTCTCGTGTT 60.038 50.000 11.47 0.00 32.65 3.32
215 216 1.291877 AAGCGCATGGTCTCGTGTTC 61.292 55.000 11.47 0.00 32.65 3.18
216 217 2.740714 GCGCATGGTCTCGTGTTCC 61.741 63.158 0.30 0.00 32.65 3.62
217 218 2.444624 CGCATGGTCTCGTGTTCCG 61.445 63.158 0.00 0.00 38.13 4.30
218 219 1.080093 GCATGGTCTCGTGTTCCGA 60.080 57.895 0.00 0.00 45.00 4.55
219 220 0.669318 GCATGGTCTCGTGTTCCGAA 60.669 55.000 0.00 0.00 46.75 4.30
220 221 1.350193 CATGGTCTCGTGTTCCGAAG 58.650 55.000 0.00 0.00 46.75 3.79
221 222 0.966920 ATGGTCTCGTGTTCCGAAGT 59.033 50.000 0.00 0.00 46.75 3.01
222 223 0.031585 TGGTCTCGTGTTCCGAAGTG 59.968 55.000 0.00 0.00 46.75 3.16
223 224 0.313043 GGTCTCGTGTTCCGAAGTGA 59.687 55.000 0.00 0.00 46.75 3.41
224 225 1.269413 GGTCTCGTGTTCCGAAGTGAA 60.269 52.381 0.00 0.00 46.75 3.18
225 226 2.466846 GTCTCGTGTTCCGAAGTGAAA 58.533 47.619 0.00 0.00 46.75 2.69
226 227 2.861935 GTCTCGTGTTCCGAAGTGAAAA 59.138 45.455 0.00 0.00 46.75 2.29
227 228 2.861935 TCTCGTGTTCCGAAGTGAAAAC 59.138 45.455 0.00 0.00 46.75 2.43
228 229 2.864343 CTCGTGTTCCGAAGTGAAAACT 59.136 45.455 0.00 0.00 46.75 2.66
229 230 2.861935 TCGTGTTCCGAAGTGAAAACTC 59.138 45.455 0.00 0.00 44.03 3.01
230 231 2.864343 CGTGTTCCGAAGTGAAAACTCT 59.136 45.455 0.00 0.00 39.56 3.24
231 232 4.046462 CGTGTTCCGAAGTGAAAACTCTA 58.954 43.478 0.00 0.00 39.56 2.43
232 233 4.148348 CGTGTTCCGAAGTGAAAACTCTAG 59.852 45.833 0.00 0.00 39.56 2.43
233 234 4.448060 GTGTTCCGAAGTGAAAACTCTAGG 59.552 45.833 0.00 0.00 31.08 3.02
234 235 4.100498 TGTTCCGAAGTGAAAACTCTAGGT 59.900 41.667 0.00 0.00 0.00 3.08
235 236 4.516365 TCCGAAGTGAAAACTCTAGGTC 57.484 45.455 0.00 0.00 0.00 3.85
236 237 4.150359 TCCGAAGTGAAAACTCTAGGTCT 58.850 43.478 0.00 0.00 0.00 3.85
237 238 4.217983 TCCGAAGTGAAAACTCTAGGTCTC 59.782 45.833 0.00 0.00 0.00 3.36
238 239 4.022242 CCGAAGTGAAAACTCTAGGTCTCA 60.022 45.833 0.00 0.00 0.00 3.27
239 240 4.918583 CGAAGTGAAAACTCTAGGTCTCAC 59.081 45.833 13.18 13.18 0.00 3.51
240 241 4.875561 AGTGAAAACTCTAGGTCTCACC 57.124 45.455 15.37 0.00 38.99 4.02
251 252 1.792006 GGTCTCACCTACGTTGGTTG 58.208 55.000 19.40 14.50 38.45 3.77
252 253 1.069668 GGTCTCACCTACGTTGGTTGT 59.930 52.381 19.40 0.00 38.45 3.32
253 254 2.297033 GGTCTCACCTACGTTGGTTGTA 59.703 50.000 19.40 7.15 38.45 2.41
254 255 3.311966 GTCTCACCTACGTTGGTTGTAC 58.688 50.000 19.40 12.75 38.45 2.90
255 256 2.297033 TCTCACCTACGTTGGTTGTACC 59.703 50.000 19.40 0.00 38.45 3.34
256 257 1.344114 TCACCTACGTTGGTTGTACCC 59.656 52.381 19.40 0.00 38.45 3.69
257 258 0.318120 ACCTACGTTGGTTGTACCCG 59.682 55.000 16.30 0.00 37.50 5.28
258 259 0.602562 CCTACGTTGGTTGTACCCGA 59.397 55.000 7.97 0.00 37.50 5.14
259 260 1.669795 CCTACGTTGGTTGTACCCGAC 60.670 57.143 7.97 0.00 37.50 4.79
260 261 1.000385 CTACGTTGGTTGTACCCGACA 60.000 52.381 0.00 0.00 38.61 4.35
261 262 0.177604 ACGTTGGTTGTACCCGACAA 59.822 50.000 8.70 0.00 46.03 3.18
269 270 2.394930 TGTACCCGACAATGATGGTG 57.605 50.000 0.00 0.00 34.15 4.17
270 271 1.626321 TGTACCCGACAATGATGGTGT 59.374 47.619 0.00 0.00 34.15 4.16
271 272 2.039216 TGTACCCGACAATGATGGTGTT 59.961 45.455 0.00 0.00 34.15 3.32
272 273 1.821216 ACCCGACAATGATGGTGTTC 58.179 50.000 0.00 0.00 0.00 3.18
273 274 0.726827 CCCGACAATGATGGTGTTCG 59.273 55.000 0.00 0.00 0.00 3.95
274 275 1.674519 CCCGACAATGATGGTGTTCGA 60.675 52.381 0.00 0.00 0.00 3.71
275 276 1.393539 CCGACAATGATGGTGTTCGAC 59.606 52.381 0.00 0.00 0.00 4.20
276 277 2.337583 CGACAATGATGGTGTTCGACT 58.662 47.619 0.00 0.00 0.00 4.18
277 278 2.736721 CGACAATGATGGTGTTCGACTT 59.263 45.455 0.00 0.00 0.00 3.01
278 279 3.181530 CGACAATGATGGTGTTCGACTTC 60.182 47.826 0.00 0.00 0.00 3.01
279 280 3.074412 ACAATGATGGTGTTCGACTTCC 58.926 45.455 0.00 0.00 0.00 3.46
280 281 3.244561 ACAATGATGGTGTTCGACTTCCT 60.245 43.478 0.00 0.00 0.00 3.36
281 282 4.020573 ACAATGATGGTGTTCGACTTCCTA 60.021 41.667 0.00 0.00 0.00 2.94
282 283 3.587797 TGATGGTGTTCGACTTCCTAC 57.412 47.619 0.00 0.00 0.00 3.18
283 284 2.232941 TGATGGTGTTCGACTTCCTACC 59.767 50.000 0.00 0.00 0.00 3.18
284 285 0.971386 TGGTGTTCGACTTCCTACCC 59.029 55.000 0.00 0.00 0.00 3.69
285 286 1.264295 GGTGTTCGACTTCCTACCCT 58.736 55.000 0.00 0.00 0.00 4.34
286 287 1.622312 GGTGTTCGACTTCCTACCCTT 59.378 52.381 0.00 0.00 0.00 3.95
287 288 2.038164 GGTGTTCGACTTCCTACCCTTT 59.962 50.000 0.00 0.00 0.00 3.11
288 289 3.495629 GGTGTTCGACTTCCTACCCTTTT 60.496 47.826 0.00 0.00 0.00 2.27
289 290 4.132336 GTGTTCGACTTCCTACCCTTTTT 58.868 43.478 0.00 0.00 0.00 1.94
290 291 4.024302 GTGTTCGACTTCCTACCCTTTTTG 60.024 45.833 0.00 0.00 0.00 2.44
291 292 3.412237 TCGACTTCCTACCCTTTTTGG 57.588 47.619 0.00 0.00 0.00 3.28
292 293 2.974099 TCGACTTCCTACCCTTTTTGGA 59.026 45.455 0.00 0.00 38.35 3.53
293 294 3.007614 TCGACTTCCTACCCTTTTTGGAG 59.992 47.826 0.00 0.00 38.35 3.86
294 295 3.687125 GACTTCCTACCCTTTTTGGAGG 58.313 50.000 0.00 0.00 38.35 4.30
295 296 2.225041 ACTTCCTACCCTTTTTGGAGGC 60.225 50.000 0.00 0.00 38.35 4.70
296 297 1.451449 TCCTACCCTTTTTGGAGGCA 58.549 50.000 0.00 0.00 38.35 4.75
297 298 2.000048 TCCTACCCTTTTTGGAGGCAT 59.000 47.619 0.00 0.00 38.35 4.40
298 299 2.381961 TCCTACCCTTTTTGGAGGCATT 59.618 45.455 0.00 0.00 38.35 3.56
299 300 3.173151 CCTACCCTTTTTGGAGGCATTT 58.827 45.455 0.00 0.00 38.35 2.32
300 301 3.055891 CCTACCCTTTTTGGAGGCATTTG 60.056 47.826 0.00 0.00 38.35 2.32
301 302 1.072173 ACCCTTTTTGGAGGCATTTGC 59.928 47.619 0.00 0.00 38.35 3.68
302 303 1.072015 CCCTTTTTGGAGGCATTTGCA 59.928 47.619 4.74 0.00 39.79 4.08
303 304 2.290450 CCCTTTTTGGAGGCATTTGCAT 60.290 45.455 4.74 0.00 39.79 3.96
304 305 2.745281 CCTTTTTGGAGGCATTTGCATG 59.255 45.455 4.74 0.00 39.79 4.06
305 306 3.404899 CTTTTTGGAGGCATTTGCATGT 58.595 40.909 4.74 0.00 44.36 3.21
306 307 4.563168 CCTTTTTGGAGGCATTTGCATGTA 60.563 41.667 4.74 0.00 39.79 2.29
307 308 3.872511 TTTGGAGGCATTTGCATGTAG 57.127 42.857 4.74 0.00 44.36 2.74
308 309 2.512692 TGGAGGCATTTGCATGTAGT 57.487 45.000 4.74 0.00 44.36 2.73
309 310 2.806434 TGGAGGCATTTGCATGTAGTT 58.194 42.857 4.74 0.00 44.36 2.24
310 311 3.164268 TGGAGGCATTTGCATGTAGTTT 58.836 40.909 4.74 0.00 44.36 2.66
311 312 3.056678 TGGAGGCATTTGCATGTAGTTTG 60.057 43.478 4.74 0.00 44.36 2.93
312 313 2.925563 GAGGCATTTGCATGTAGTTTGC 59.074 45.455 4.74 0.47 44.36 3.68
313 314 2.564062 AGGCATTTGCATGTAGTTTGCT 59.436 40.909 4.74 0.00 44.36 3.91
314 315 2.925563 GGCATTTGCATGTAGTTTGCTC 59.074 45.455 4.74 2.89 44.36 4.26
315 316 3.577667 GCATTTGCATGTAGTTTGCTCA 58.422 40.909 0.00 0.00 40.77 4.26
316 317 3.611113 GCATTTGCATGTAGTTTGCTCAG 59.389 43.478 0.00 0.00 40.77 3.35
317 318 4.616604 GCATTTGCATGTAGTTTGCTCAGA 60.617 41.667 0.00 0.00 40.77 3.27
318 319 5.463286 CATTTGCATGTAGTTTGCTCAGAA 58.537 37.500 0.00 0.00 40.77 3.02
319 320 5.710513 TTTGCATGTAGTTTGCTCAGAAT 57.289 34.783 0.00 0.00 40.77 2.40
320 321 5.710513 TTGCATGTAGTTTGCTCAGAATT 57.289 34.783 0.00 0.00 40.77 2.17
321 322 6.816134 TTGCATGTAGTTTGCTCAGAATTA 57.184 33.333 0.00 0.00 40.77 1.40
322 323 7.395190 TTGCATGTAGTTTGCTCAGAATTAT 57.605 32.000 0.00 0.00 40.77 1.28
323 324 7.395190 TGCATGTAGTTTGCTCAGAATTATT 57.605 32.000 0.00 0.00 40.77 1.40
324 325 7.829725 TGCATGTAGTTTGCTCAGAATTATTT 58.170 30.769 0.00 0.00 40.77 1.40
325 326 8.306038 TGCATGTAGTTTGCTCAGAATTATTTT 58.694 29.630 0.00 0.00 40.77 1.82
326 327 8.801913 GCATGTAGTTTGCTCAGAATTATTTTC 58.198 33.333 0.00 0.00 37.14 2.29
327 328 9.294030 CATGTAGTTTGCTCAGAATTATTTTCC 57.706 33.333 0.00 0.00 0.00 3.13
328 329 8.402798 TGTAGTTTGCTCAGAATTATTTTCCA 57.597 30.769 0.00 0.00 0.00 3.53
329 330 8.514594 TGTAGTTTGCTCAGAATTATTTTCCAG 58.485 33.333 0.00 0.00 0.00 3.86
330 331 6.928520 AGTTTGCTCAGAATTATTTTCCAGG 58.071 36.000 0.00 0.00 0.00 4.45
331 332 5.920193 TTGCTCAGAATTATTTTCCAGGG 57.080 39.130 0.00 0.00 0.00 4.45
332 333 4.934356 TGCTCAGAATTATTTTCCAGGGT 58.066 39.130 0.00 0.00 0.00 4.34
333 334 4.706476 TGCTCAGAATTATTTTCCAGGGTG 59.294 41.667 0.00 0.00 0.00 4.61
334 335 4.949856 GCTCAGAATTATTTTCCAGGGTGA 59.050 41.667 0.00 0.00 0.00 4.02
338 339 7.666623 TCAGAATTATTTTCCAGGGTGAAAAC 58.333 34.615 1.44 0.00 44.46 2.43
354 355 4.082190 GTGAAAACCCAAAATCTAGCCTCC 60.082 45.833 0.00 0.00 0.00 4.30
356 357 4.337264 AAACCCAAAATCTAGCCTCCAT 57.663 40.909 0.00 0.00 0.00 3.41
359 360 2.091665 CCCAAAATCTAGCCTCCATGGT 60.092 50.000 12.58 0.00 38.35 3.55
376 377 4.501915 CCATGGTTGGATATGGCAATTGAC 60.502 45.833 10.34 7.09 46.92 3.18
381 382 2.297701 GGATATGGCAATTGACGGTGT 58.702 47.619 10.34 0.00 0.00 4.16
393 394 0.850856 GACGGTGTTCTCGTGTTGTC 59.149 55.000 0.00 0.00 41.22 3.18
403 404 0.534203 TCGTGTTGTCCCCTTCTTGC 60.534 55.000 0.00 0.00 0.00 4.01
411 412 1.672881 GTCCCCTTCTTGCAATCATCG 59.327 52.381 0.00 0.00 0.00 3.84
412 413 1.559219 TCCCCTTCTTGCAATCATCGA 59.441 47.619 0.00 0.00 0.00 3.59
413 414 2.173356 TCCCCTTCTTGCAATCATCGAT 59.827 45.455 0.00 0.00 0.00 3.59
430 431 4.732285 TCGATGTTGAAGCACTTTTCTC 57.268 40.909 0.00 0.00 0.00 2.87
431 432 3.184379 TCGATGTTGAAGCACTTTTCTCG 59.816 43.478 0.00 0.00 0.00 4.04
432 433 3.059597 CGATGTTGAAGCACTTTTCTCGT 60.060 43.478 0.00 0.00 0.00 4.18
433 434 4.149922 CGATGTTGAAGCACTTTTCTCGTA 59.850 41.667 0.00 0.00 0.00 3.43
436 437 4.506654 TGTTGAAGCACTTTTCTCGTAGTC 59.493 41.667 0.00 0.00 0.00 2.59
446 447 1.735386 TCTCGTAGTCCGGAGTTCTG 58.265 55.000 18.92 7.91 37.11 3.02
452 453 1.924731 AGTCCGGAGTTCTGTCATCA 58.075 50.000 3.06 0.00 0.00 3.07
454 455 1.546476 GTCCGGAGTTCTGTCATCAGT 59.454 52.381 3.06 0.00 41.91 3.41
458 459 2.693069 GGAGTTCTGTCATCAGTGGTG 58.307 52.381 0.00 0.00 41.91 4.17
463 464 1.768275 TCTGTCATCAGTGGTGGTTGT 59.232 47.619 2.93 0.00 41.91 3.32
469 470 2.498644 TCAGTGGTGGTTGTTGTTGA 57.501 45.000 0.00 0.00 0.00 3.18
470 471 2.796557 TCAGTGGTGGTTGTTGTTGAA 58.203 42.857 0.00 0.00 0.00 2.69
476 477 1.926510 GTGGTTGTTGTTGAAGCTTGC 59.073 47.619 2.10 0.00 0.00 4.01
495 496 1.959747 CAACTGCATGCTTGAGTTCG 58.040 50.000 20.33 10.78 0.00 3.95
502 503 2.578495 CATGCTTGAGTTCGCTTCAAC 58.422 47.619 0.00 0.00 0.00 3.18
506 507 2.224079 GCTTGAGTTCGCTTCAACATGA 59.776 45.455 0.00 0.00 0.00 3.07
511 512 4.083855 TGAGTTCGCTTCAACATGACATTC 60.084 41.667 0.00 0.00 0.00 2.67
512 513 3.814842 AGTTCGCTTCAACATGACATTCA 59.185 39.130 0.00 0.00 0.00 2.57
517 518 4.103357 GCTTCAACATGACATTCAGATGC 58.897 43.478 0.00 0.00 36.72 3.91
519 520 2.679336 TCAACATGACATTCAGATGCCG 59.321 45.455 0.00 0.00 36.72 5.69
523 524 1.825090 TGACATTCAGATGCCGCTTT 58.175 45.000 0.00 0.00 36.72 3.51
527 528 2.095059 ACATTCAGATGCCGCTTTCAAC 60.095 45.455 0.00 0.00 36.72 3.18
530 531 2.229792 TCAGATGCCGCTTTCAACTTT 58.770 42.857 0.00 0.00 0.00 2.66
532 533 2.982470 CAGATGCCGCTTTCAACTTTTC 59.018 45.455 0.00 0.00 0.00 2.29
538 539 4.112634 GCCGCTTTCAACTTTTCTTTTCT 58.887 39.130 0.00 0.00 0.00 2.52
539 540 4.207224 GCCGCTTTCAACTTTTCTTTTCTC 59.793 41.667 0.00 0.00 0.00 2.87
540 541 5.339990 CCGCTTTCAACTTTTCTTTTCTCA 58.660 37.500 0.00 0.00 0.00 3.27
541 542 5.456822 CCGCTTTCAACTTTTCTTTTCTCAG 59.543 40.000 0.00 0.00 0.00 3.35
542 543 6.030228 CGCTTTCAACTTTTCTTTTCTCAGT 58.970 36.000 0.00 0.00 0.00 3.41
543 544 6.021153 CGCTTTCAACTTTTCTTTTCTCAGTG 60.021 38.462 0.00 0.00 0.00 3.66
544 545 6.808704 GCTTTCAACTTTTCTTTTCTCAGTGT 59.191 34.615 0.00 0.00 0.00 3.55
545 546 7.201384 GCTTTCAACTTTTCTTTTCTCAGTGTG 60.201 37.037 0.00 0.00 0.00 3.82
546 547 7.447374 TTCAACTTTTCTTTTCTCAGTGTGA 57.553 32.000 0.00 0.00 0.00 3.58
547 548 7.076842 TCAACTTTTCTTTTCTCAGTGTGAG 57.923 36.000 0.00 0.00 45.59 3.51
548 549 6.094048 TCAACTTTTCTTTTCTCAGTGTGAGG 59.906 38.462 4.14 0.00 44.39 3.86
549 550 4.336713 ACTTTTCTTTTCTCAGTGTGAGGC 59.663 41.667 4.14 0.00 44.39 4.70
550 551 3.845781 TTCTTTTCTCAGTGTGAGGCT 57.154 42.857 4.14 0.00 44.39 4.58
551 552 3.117491 TCTTTTCTCAGTGTGAGGCTG 57.883 47.619 0.00 0.00 44.39 4.85
552 553 2.435805 TCTTTTCTCAGTGTGAGGCTGT 59.564 45.455 0.00 0.00 44.39 4.40
553 554 2.245159 TTTCTCAGTGTGAGGCTGTG 57.755 50.000 0.00 0.00 44.39 3.66
554 555 0.250038 TTCTCAGTGTGAGGCTGTGC 60.250 55.000 0.00 0.00 44.39 4.57
555 556 2.025969 CTCAGTGTGAGGCTGTGCG 61.026 63.158 0.00 0.00 40.71 5.34
556 557 3.720193 CAGTGTGAGGCTGTGCGC 61.720 66.667 0.00 0.00 38.13 6.09
574 575 0.370273 GCGCGTTGGTCTTGACTATG 59.630 55.000 8.43 0.00 0.00 2.23
587 588 7.611467 TGGTCTTGACTATGTGCATTCTAATTT 59.389 33.333 0.00 0.00 0.00 1.82
591 592 9.425893 CTTGACTATGTGCATTCTAATTTTACG 57.574 33.333 0.00 0.00 0.00 3.18
620 621 8.079809 GGTTAAGTGTGTGTTTATTATGCTTGT 58.920 33.333 0.00 0.00 0.00 3.16
642 643 9.838975 CTTGTATATTTTTATGCGGCATTATGA 57.161 29.630 21.99 6.05 0.00 2.15
649 650 9.926158 ATTTTTATGCGGCATTATGAATCAATA 57.074 25.926 21.99 0.00 0.00 1.90
652 653 8.969121 TTATGCGGCATTATGAATCAATAAAG 57.031 30.769 21.99 0.00 0.00 1.85
699 700 4.762251 ACAATGAAAGCTGACCTCCTAAAC 59.238 41.667 0.00 0.00 0.00 2.01
716 717 4.691216 CCTAAACTCGTTTTCCTCTCCAAG 59.309 45.833 0.00 0.00 34.23 3.61
717 718 4.417426 AAACTCGTTTTCCTCTCCAAGA 57.583 40.909 0.00 0.00 0.00 3.02
719 720 3.729966 ACTCGTTTTCCTCTCCAAGAAC 58.270 45.455 0.00 0.00 0.00 3.01
721 722 4.587684 ACTCGTTTTCCTCTCCAAGAACTA 59.412 41.667 0.00 0.00 0.00 2.24
722 723 5.246429 ACTCGTTTTCCTCTCCAAGAACTAT 59.754 40.000 0.00 0.00 0.00 2.12
726 727 8.319146 TCGTTTTCCTCTCCAAGAACTATTATT 58.681 33.333 0.00 0.00 0.00 1.40
763 764 2.355010 AAACTATGCTGATGCCCTCC 57.645 50.000 0.00 0.00 38.71 4.30
764 765 0.475906 AACTATGCTGATGCCCTCCC 59.524 55.000 0.00 0.00 38.71 4.30
765 766 0.695462 ACTATGCTGATGCCCTCCCA 60.695 55.000 0.00 0.00 38.71 4.37
766 767 0.250640 CTATGCTGATGCCCTCCCAC 60.251 60.000 0.00 0.00 38.71 4.61
767 768 0.695462 TATGCTGATGCCCTCCCACT 60.695 55.000 0.00 0.00 38.71 4.00
783 784 2.028476 CCCACTTCCGTTCACTATCACA 60.028 50.000 0.00 0.00 0.00 3.58
795 797 5.604758 TCACTATCACAGATTTCCTCCAG 57.395 43.478 0.00 0.00 0.00 3.86
818 820 3.757745 AACACACTGTCACGGAAAAAG 57.242 42.857 0.00 0.00 0.00 2.27
819 821 2.706890 ACACACTGTCACGGAAAAAGT 58.293 42.857 0.00 0.00 0.00 2.66
820 822 2.676342 ACACACTGTCACGGAAAAAGTC 59.324 45.455 0.00 0.00 0.00 3.01
863 872 0.880278 TGCAACTCTTGACCAGCGAC 60.880 55.000 0.00 0.00 0.00 5.19
878 887 4.500116 GACTGAGCCGACTCGCCC 62.500 72.222 0.00 0.00 46.69 6.13
951 960 1.884926 CGCGCCAAATCCTCCTCTC 60.885 63.158 0.00 0.00 0.00 3.20
1054 2642 1.377202 CCACAGATTCCACACCCCG 60.377 63.158 0.00 0.00 0.00 5.73
1055 2643 2.040544 CACAGATTCCACACCCCGC 61.041 63.158 0.00 0.00 0.00 6.13
1185 2777 0.621609 CCAGAATCCGTAACCCCCAA 59.378 55.000 0.00 0.00 0.00 4.12
1192 2784 0.828677 CCGTAACCCCCAACTCCTAG 59.171 60.000 0.00 0.00 0.00 3.02
1381 2978 3.492353 ATGTCCATCGGGGGCCTG 61.492 66.667 0.84 0.00 42.20 4.85
1445 3042 2.283894 TCGAGGCCAAGCTCTCCA 60.284 61.111 5.01 0.00 0.00 3.86
1515 3112 0.877649 CACATTGATCCTCCTCCGCG 60.878 60.000 0.00 0.00 0.00 6.46
1566 3163 6.317140 GGATACTTGGATACGTATCGGATACA 59.683 42.308 25.21 16.01 39.52 2.29
1597 3194 0.876777 TACGCCCGATACGCCAATTG 60.877 55.000 0.00 0.00 0.00 2.32
1603 3200 1.860950 CCGATACGCCAATTGTCTGAG 59.139 52.381 4.43 0.00 0.00 3.35
1619 3216 2.693591 TCTGAGAACATGGATACGGGAC 59.306 50.000 0.00 0.00 42.51 4.46
1620 3217 2.430694 CTGAGAACATGGATACGGGACA 59.569 50.000 0.00 0.00 42.51 4.02
1621 3218 2.167693 TGAGAACATGGATACGGGACAC 59.832 50.000 0.00 0.00 42.51 3.67
1665 3289 9.950496 ATTGAAGAAAATAGAGCTTCTAAGTCA 57.050 29.630 0.00 0.00 38.96 3.41
1731 3358 5.476599 CACTTGGTCCACTTCCATTAATTGA 59.523 40.000 0.00 0.00 34.75 2.57
1739 3366 6.764308 CACTTCCATTAATTGACAGTGGAT 57.236 37.500 16.00 0.00 38.64 3.41
1779 3411 4.718940 TTAATCAGTGCATCGACTCTCA 57.281 40.909 0.00 0.00 0.00 3.27
1798 3430 5.620206 TCTCACTTGCTCACCTTTCAATTA 58.380 37.500 0.00 0.00 0.00 1.40
1904 3542 1.574134 TTTCACGTCAAACGAGGGAC 58.426 50.000 6.48 0.00 46.05 4.46
1905 3543 0.249573 TTCACGTCAAACGAGGGACC 60.250 55.000 6.48 0.00 46.05 4.46
1951 3589 8.696374 CACAGAAGTATCCTAGGAGTATCAAAA 58.304 37.037 18.34 0.00 36.25 2.44
2081 3737 0.447801 CGTGCAACATAGCCCAGAAC 59.552 55.000 0.00 0.00 35.74 3.01
2082 3738 1.826385 GTGCAACATAGCCCAGAACT 58.174 50.000 0.00 0.00 36.32 3.01
2083 3739 1.740025 GTGCAACATAGCCCAGAACTC 59.260 52.381 0.00 0.00 36.32 3.01
2084 3740 1.630369 TGCAACATAGCCCAGAACTCT 59.370 47.619 0.00 0.00 0.00 3.24
2085 3741 2.837591 TGCAACATAGCCCAGAACTCTA 59.162 45.455 0.00 0.00 0.00 2.43
2089 3745 3.982516 ACATAGCCCAGAACTCTACTCA 58.017 45.455 0.00 0.00 0.00 3.41
2091 3747 2.310779 AGCCCAGAACTCTACTCACA 57.689 50.000 0.00 0.00 0.00 3.58
2100 3756 1.880675 ACTCTACTCACACCGTCACAG 59.119 52.381 0.00 0.00 0.00 3.66
2105 3761 0.456824 CTCACACCGTCACAGGATCG 60.457 60.000 0.00 0.00 34.73 3.69
2112 3768 2.224209 ACCGTCACAGGATCGTTCTTTT 60.224 45.455 0.00 0.00 34.73 2.27
2132 3789 7.792032 TCTTTTCATCGGGAGTAAATCTGTAT 58.208 34.615 0.00 0.00 0.00 2.29
2134 3791 8.801882 TTTTCATCGGGAGTAAATCTGTATTT 57.198 30.769 0.00 0.00 38.80 1.40
2135 3792 7.786178 TTCATCGGGAGTAAATCTGTATTTG 57.214 36.000 0.00 0.00 36.02 2.32
2137 3794 6.984474 TCATCGGGAGTAAATCTGTATTTGAC 59.016 38.462 0.00 0.00 36.02 3.18
2140 3797 7.039882 TCGGGAGTAAATCTGTATTTGACTTC 58.960 38.462 0.00 0.00 36.02 3.01
2172 3858 2.925724 TGTGATGTTCCTCGTTTTGGT 58.074 42.857 0.00 0.00 0.00 3.67
2323 4009 8.600625 TGGATTTTCGTCAGTTAATATTTCTCG 58.399 33.333 0.00 0.00 0.00 4.04
2342 4031 6.546972 TCTCGCATATCTGAAGTACTAGTG 57.453 41.667 5.39 0.00 0.00 2.74
2352 4041 6.390721 TCTGAAGTACTAGTGCTGTGATTTC 58.609 40.000 14.67 7.60 0.00 2.17
2362 4051 4.036027 AGTGCTGTGATTTCAAGTCAACAG 59.964 41.667 7.62 7.62 32.67 3.16
2400 4089 7.761704 TGCTTTTGTTTGCTTATTTGTTCAGTA 59.238 29.630 0.00 0.00 0.00 2.74
2401 4090 8.764287 GCTTTTGTTTGCTTATTTGTTCAGTAT 58.236 29.630 0.00 0.00 0.00 2.12
2555 5553 2.917713 AATACATTGCAGGTTGGGGA 57.082 45.000 0.00 0.00 0.00 4.81
2592 5590 2.409570 GGGGAGGGCAGAGTTTATACT 58.590 52.381 0.00 0.00 37.31 2.12
2718 5717 5.454897 GGTCACTTGAAAGTTTAGACCTCCT 60.455 44.000 17.62 0.00 42.17 3.69
2762 5761 8.429237 AAATTACAACTTACAATCATGGGGAA 57.571 30.769 0.00 0.00 0.00 3.97
2766 5765 5.245977 ACAACTTACAATCATGGGGAAAAGG 59.754 40.000 0.00 0.00 0.00 3.11
2770 5769 4.078932 ACAATCATGGGGAAAAGGGAAT 57.921 40.909 0.00 0.00 0.00 3.01
2889 5888 7.703058 AAGATTACAAACTTACAATCAGGGG 57.297 36.000 0.00 0.00 31.25 4.79
2957 5956 5.523916 CAGATTCTTGATAACCGAATTCCGT 59.476 40.000 0.00 0.00 36.31 4.69
3400 6433 3.349927 CAACAGATCAATGGCAAGAGGA 58.650 45.455 0.00 0.00 0.00 3.71
3403 6436 2.885266 CAGATCAATGGCAAGAGGATGG 59.115 50.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.074627 TCAGGATCAACAACGTTACCAA 57.925 40.909 0.00 0.00 0.00 3.67
4 5 3.374058 CCATCAGGATCAACAACGTTACC 59.626 47.826 0.00 0.00 36.89 2.85
5 6 4.250464 TCCATCAGGATCAACAACGTTAC 58.750 43.478 0.00 0.00 39.61 2.50
18 19 0.611896 TCAGAGCACGTCCATCAGGA 60.612 55.000 0.00 0.00 43.21 3.86
19 20 0.463204 ATCAGAGCACGTCCATCAGG 59.537 55.000 0.00 0.00 0.00 3.86
20 21 1.408340 AGATCAGAGCACGTCCATCAG 59.592 52.381 0.00 0.00 0.00 2.90
21 22 1.478631 AGATCAGAGCACGTCCATCA 58.521 50.000 0.00 0.00 0.00 3.07
22 23 2.621055 AGTAGATCAGAGCACGTCCATC 59.379 50.000 0.00 0.00 0.00 3.51
23 24 2.621055 GAGTAGATCAGAGCACGTCCAT 59.379 50.000 0.00 0.00 0.00 3.41
24 25 2.017782 GAGTAGATCAGAGCACGTCCA 58.982 52.381 0.00 0.00 0.00 4.02
25 26 1.335496 GGAGTAGATCAGAGCACGTCC 59.665 57.143 0.00 0.00 0.00 4.79
26 27 2.017782 TGGAGTAGATCAGAGCACGTC 58.982 52.381 0.00 0.00 0.00 4.34
27 28 1.746220 GTGGAGTAGATCAGAGCACGT 59.254 52.381 0.00 0.00 0.00 4.49
28 29 1.745653 TGTGGAGTAGATCAGAGCACG 59.254 52.381 0.00 0.00 0.00 5.34
29 30 5.521906 TTATGTGGAGTAGATCAGAGCAC 57.478 43.478 0.00 0.00 0.00 4.40
30 31 5.422012 TGTTTATGTGGAGTAGATCAGAGCA 59.578 40.000 0.00 0.00 0.00 4.26
31 32 5.907207 TGTTTATGTGGAGTAGATCAGAGC 58.093 41.667 0.00 0.00 0.00 4.09
32 33 6.927936 CCATGTTTATGTGGAGTAGATCAGAG 59.072 42.308 0.00 0.00 37.72 3.35
33 34 6.384015 ACCATGTTTATGTGGAGTAGATCAGA 59.616 38.462 0.00 0.00 38.86 3.27
34 35 6.586344 ACCATGTTTATGTGGAGTAGATCAG 58.414 40.000 0.00 0.00 38.86 2.90
35 36 6.560003 ACCATGTTTATGTGGAGTAGATCA 57.440 37.500 0.00 0.00 38.86 2.92
36 37 8.150945 ACATACCATGTTTATGTGGAGTAGATC 58.849 37.037 13.73 0.00 41.63 2.75
37 38 8.034313 ACATACCATGTTTATGTGGAGTAGAT 57.966 34.615 13.73 0.00 41.63 1.98
38 39 7.432148 ACATACCATGTTTATGTGGAGTAGA 57.568 36.000 13.73 0.00 41.63 2.59
53 54 5.691305 CACCACAAGAACAAAACATACCATG 59.309 40.000 0.00 0.00 0.00 3.66
54 55 5.596361 TCACCACAAGAACAAAACATACCAT 59.404 36.000 0.00 0.00 0.00 3.55
55 56 4.950475 TCACCACAAGAACAAAACATACCA 59.050 37.500 0.00 0.00 0.00 3.25
56 57 5.508200 TCACCACAAGAACAAAACATACC 57.492 39.130 0.00 0.00 0.00 2.73
57 58 6.503524 ACATCACCACAAGAACAAAACATAC 58.496 36.000 0.00 0.00 0.00 2.39
58 59 6.238897 GGACATCACCACAAGAACAAAACATA 60.239 38.462 0.00 0.00 0.00 2.29
59 60 5.451798 GGACATCACCACAAGAACAAAACAT 60.452 40.000 0.00 0.00 0.00 2.71
60 61 4.142271 GGACATCACCACAAGAACAAAACA 60.142 41.667 0.00 0.00 0.00 2.83
61 62 4.142271 TGGACATCACCACAAGAACAAAAC 60.142 41.667 0.00 0.00 34.77 2.43
62 63 4.019858 TGGACATCACCACAAGAACAAAA 58.980 39.130 0.00 0.00 34.77 2.44
63 64 3.625853 TGGACATCACCACAAGAACAAA 58.374 40.909 0.00 0.00 34.77 2.83
64 65 3.289407 TGGACATCACCACAAGAACAA 57.711 42.857 0.00 0.00 34.77 2.83
65 66 3.148412 CATGGACATCACCACAAGAACA 58.852 45.455 0.00 0.00 43.03 3.18
66 67 3.149196 ACATGGACATCACCACAAGAAC 58.851 45.455 0.00 0.00 43.03 3.01
67 68 3.507162 ACATGGACATCACCACAAGAA 57.493 42.857 0.00 0.00 43.03 2.52
68 69 3.507162 AACATGGACATCACCACAAGA 57.493 42.857 0.00 0.00 43.03 3.02
69 70 5.239359 CATAACATGGACATCACCACAAG 57.761 43.478 0.00 0.00 43.03 3.16
83 84 6.421405 CGTACACATTCACATCCATAACATG 58.579 40.000 0.00 0.00 0.00 3.21
84 85 5.527214 CCGTACACATTCACATCCATAACAT 59.473 40.000 0.00 0.00 0.00 2.71
85 86 4.873259 CCGTACACATTCACATCCATAACA 59.127 41.667 0.00 0.00 0.00 2.41
86 87 4.260620 GCCGTACACATTCACATCCATAAC 60.261 45.833 0.00 0.00 0.00 1.89
87 88 3.874543 GCCGTACACATTCACATCCATAA 59.125 43.478 0.00 0.00 0.00 1.90
88 89 3.133901 AGCCGTACACATTCACATCCATA 59.866 43.478 0.00 0.00 0.00 2.74
89 90 2.092968 AGCCGTACACATTCACATCCAT 60.093 45.455 0.00 0.00 0.00 3.41
90 91 1.277842 AGCCGTACACATTCACATCCA 59.722 47.619 0.00 0.00 0.00 3.41
91 92 1.665679 CAGCCGTACACATTCACATCC 59.334 52.381 0.00 0.00 0.00 3.51
92 93 2.346803 ACAGCCGTACACATTCACATC 58.653 47.619 0.00 0.00 0.00 3.06
93 94 2.289382 TGACAGCCGTACACATTCACAT 60.289 45.455 0.00 0.00 0.00 3.21
94 95 1.069358 TGACAGCCGTACACATTCACA 59.931 47.619 0.00 0.00 0.00 3.58
95 96 1.790755 TGACAGCCGTACACATTCAC 58.209 50.000 0.00 0.00 0.00 3.18
96 97 2.412870 CTTGACAGCCGTACACATTCA 58.587 47.619 0.00 0.00 0.00 2.57
97 98 1.732259 CCTTGACAGCCGTACACATTC 59.268 52.381 0.00 0.00 0.00 2.67
98 99 1.808411 CCTTGACAGCCGTACACATT 58.192 50.000 0.00 0.00 0.00 2.71
99 100 0.673644 GCCTTGACAGCCGTACACAT 60.674 55.000 0.00 0.00 0.00 3.21
100 101 1.301401 GCCTTGACAGCCGTACACA 60.301 57.895 0.00 0.00 0.00 3.72
101 102 2.380410 CGCCTTGACAGCCGTACAC 61.380 63.158 0.00 0.00 0.00 2.90
102 103 2.048597 CGCCTTGACAGCCGTACA 60.049 61.111 0.00 0.00 0.00 2.90
103 104 2.048503 ACGCCTTGACAGCCGTAC 60.049 61.111 0.00 0.00 31.43 3.67
104 105 2.260434 GACGCCTTGACAGCCGTA 59.740 61.111 0.00 0.00 33.63 4.02
105 106 3.923864 TGACGCCTTGACAGCCGT 61.924 61.111 0.00 0.00 36.53 5.68
106 107 3.414700 GTGACGCCTTGACAGCCG 61.415 66.667 0.00 0.00 0.00 5.52
107 108 3.414700 CGTGACGCCTTGACAGCC 61.415 66.667 0.00 0.00 0.00 4.85
108 109 1.687494 GATCGTGACGCCTTGACAGC 61.687 60.000 0.00 0.00 0.00 4.40
109 110 0.109086 AGATCGTGACGCCTTGACAG 60.109 55.000 0.00 0.00 0.00 3.51
110 111 0.388520 CAGATCGTGACGCCTTGACA 60.389 55.000 0.00 0.00 0.00 3.58
111 112 1.078759 CCAGATCGTGACGCCTTGAC 61.079 60.000 0.00 0.00 0.00 3.18
112 113 1.215382 CCAGATCGTGACGCCTTGA 59.785 57.895 0.00 0.00 0.00 3.02
113 114 2.456119 GCCAGATCGTGACGCCTTG 61.456 63.158 0.00 0.00 0.00 3.61
114 115 2.125512 GCCAGATCGTGACGCCTT 60.126 61.111 0.00 0.00 0.00 4.35
115 116 2.650116 AAGCCAGATCGTGACGCCT 61.650 57.895 0.00 0.00 0.00 5.52
116 117 2.125512 AAGCCAGATCGTGACGCC 60.126 61.111 0.00 0.00 0.00 5.68
117 118 3.084579 CAAGCCAGATCGTGACGC 58.915 61.111 0.00 0.00 0.00 5.19
118 119 1.690283 CTGCAAGCCAGATCGTGACG 61.690 60.000 0.00 0.00 44.64 4.35
119 120 2.084844 CTGCAAGCCAGATCGTGAC 58.915 57.895 0.00 0.00 44.64 3.67
120 121 4.604114 CTGCAAGCCAGATCGTGA 57.396 55.556 0.00 0.00 44.64 4.35
131 132 2.233007 GAAGAAGTCGCCGCTGCAAG 62.233 60.000 0.00 0.00 37.32 4.01
132 133 2.280797 AAGAAGTCGCCGCTGCAA 60.281 55.556 0.00 0.00 37.32 4.08
133 134 2.738521 GAAGAAGTCGCCGCTGCA 60.739 61.111 0.00 0.00 37.32 4.41
134 135 1.639298 AATGAAGAAGTCGCCGCTGC 61.639 55.000 0.00 0.00 0.00 5.25
135 136 0.095935 CAATGAAGAAGTCGCCGCTG 59.904 55.000 0.00 0.00 0.00 5.18
136 137 0.037326 TCAATGAAGAAGTCGCCGCT 60.037 50.000 0.00 0.00 0.00 5.52
137 138 0.796312 TTCAATGAAGAAGTCGCCGC 59.204 50.000 0.00 0.00 0.00 6.53
138 139 3.536158 TTTTCAATGAAGAAGTCGCCG 57.464 42.857 0.00 0.00 0.00 6.46
139 140 4.168760 CCATTTTCAATGAAGAAGTCGCC 58.831 43.478 0.00 0.00 0.00 5.54
140 141 4.168760 CCCATTTTCAATGAAGAAGTCGC 58.831 43.478 0.00 0.00 0.00 5.19
141 142 4.218417 ACCCCATTTTCAATGAAGAAGTCG 59.782 41.667 0.00 0.00 0.00 4.18
142 143 5.619981 CGACCCCATTTTCAATGAAGAAGTC 60.620 44.000 0.00 0.00 0.00 3.01
143 144 4.218417 CGACCCCATTTTCAATGAAGAAGT 59.782 41.667 0.00 0.00 0.00 3.01
144 145 4.458989 TCGACCCCATTTTCAATGAAGAAG 59.541 41.667 0.00 0.00 0.00 2.85
145 146 4.402829 TCGACCCCATTTTCAATGAAGAA 58.597 39.130 0.00 0.00 0.00 2.52
146 147 4.027674 TCGACCCCATTTTCAATGAAGA 57.972 40.909 0.00 0.00 0.00 2.87
147 148 4.989279 ATCGACCCCATTTTCAATGAAG 57.011 40.909 0.00 0.00 0.00 3.02
148 149 5.505780 ACTATCGACCCCATTTTCAATGAA 58.494 37.500 0.00 0.00 0.00 2.57
149 150 5.110814 ACTATCGACCCCATTTTCAATGA 57.889 39.130 0.00 0.00 0.00 2.57
150 151 5.820423 TGTACTATCGACCCCATTTTCAATG 59.180 40.000 0.00 0.00 0.00 2.82
151 152 5.996644 TGTACTATCGACCCCATTTTCAAT 58.003 37.500 0.00 0.00 0.00 2.57
152 153 5.423704 TGTACTATCGACCCCATTTTCAA 57.576 39.130 0.00 0.00 0.00 2.69
153 154 5.364778 CATGTACTATCGACCCCATTTTCA 58.635 41.667 0.00 0.00 0.00 2.69
154 155 4.755123 CCATGTACTATCGACCCCATTTTC 59.245 45.833 0.00 0.00 0.00 2.29
155 156 4.410883 TCCATGTACTATCGACCCCATTTT 59.589 41.667 0.00 0.00 0.00 1.82
156 157 3.971305 TCCATGTACTATCGACCCCATTT 59.029 43.478 0.00 0.00 0.00 2.32
157 158 3.583228 TCCATGTACTATCGACCCCATT 58.417 45.455 0.00 0.00 0.00 3.16
158 159 3.254093 TCCATGTACTATCGACCCCAT 57.746 47.619 0.00 0.00 0.00 4.00
159 160 2.759839 TCCATGTACTATCGACCCCA 57.240 50.000 0.00 0.00 0.00 4.96
160 161 2.963782 ACTTCCATGTACTATCGACCCC 59.036 50.000 0.00 0.00 0.00 4.95
161 162 4.667519 AACTTCCATGTACTATCGACCC 57.332 45.455 0.00 0.00 0.00 4.46
162 163 4.809426 CCAAACTTCCATGTACTATCGACC 59.191 45.833 0.00 0.00 0.00 4.79
163 164 5.291128 CACCAAACTTCCATGTACTATCGAC 59.709 44.000 0.00 0.00 0.00 4.20
164 165 5.416083 CACCAAACTTCCATGTACTATCGA 58.584 41.667 0.00 0.00 0.00 3.59
165 166 4.570772 CCACCAAACTTCCATGTACTATCG 59.429 45.833 0.00 0.00 0.00 2.92
166 167 5.354234 CACCACCAAACTTCCATGTACTATC 59.646 44.000 0.00 0.00 0.00 2.08
167 168 5.253330 CACCACCAAACTTCCATGTACTAT 58.747 41.667 0.00 0.00 0.00 2.12
168 169 4.647611 CACCACCAAACTTCCATGTACTA 58.352 43.478 0.00 0.00 0.00 1.82
169 170 3.486383 CACCACCAAACTTCCATGTACT 58.514 45.455 0.00 0.00 0.00 2.73
170 171 2.030274 GCACCACCAAACTTCCATGTAC 60.030 50.000 0.00 0.00 0.00 2.90
171 172 2.158534 AGCACCACCAAACTTCCATGTA 60.159 45.455 0.00 0.00 0.00 2.29
172 173 1.039856 GCACCACCAAACTTCCATGT 58.960 50.000 0.00 0.00 0.00 3.21
173 174 1.331214 AGCACCACCAAACTTCCATG 58.669 50.000 0.00 0.00 0.00 3.66
174 175 2.086610 AAGCACCACCAAACTTCCAT 57.913 45.000 0.00 0.00 0.00 3.41
175 176 1.859302 AAAGCACCACCAAACTTCCA 58.141 45.000 0.00 0.00 0.00 3.53
176 177 2.979814 AAAAGCACCACCAAACTTCC 57.020 45.000 0.00 0.00 0.00 3.46
191 192 1.732259 ACGAGACCATGCGCTTAAAAG 59.268 47.619 9.73 0.00 0.00 2.27
192 193 1.463056 CACGAGACCATGCGCTTAAAA 59.537 47.619 9.73 0.00 0.00 1.52
193 194 1.075542 CACGAGACCATGCGCTTAAA 58.924 50.000 9.73 0.00 0.00 1.52
194 195 0.037697 ACACGAGACCATGCGCTTAA 60.038 50.000 9.73 0.00 0.00 1.85
195 196 0.037697 AACACGAGACCATGCGCTTA 60.038 50.000 9.73 0.00 0.00 3.09
196 197 1.291877 GAACACGAGACCATGCGCTT 61.292 55.000 9.73 0.00 0.00 4.68
197 198 1.738099 GAACACGAGACCATGCGCT 60.738 57.895 9.73 0.00 0.00 5.92
198 199 2.740714 GGAACACGAGACCATGCGC 61.741 63.158 0.00 0.00 0.00 6.09
199 200 3.474806 GGAACACGAGACCATGCG 58.525 61.111 0.00 0.00 0.00 4.73
209 210 2.864343 AGAGTTTTCACTTCGGAACACG 59.136 45.455 0.00 0.00 37.36 4.49
210 211 4.448060 CCTAGAGTTTTCACTTCGGAACAC 59.552 45.833 0.00 0.00 31.22 3.32
211 212 4.100498 ACCTAGAGTTTTCACTTCGGAACA 59.900 41.667 0.00 0.00 31.22 3.18
212 213 4.629092 ACCTAGAGTTTTCACTTCGGAAC 58.371 43.478 0.00 0.00 31.22 3.62
213 214 4.587684 AGACCTAGAGTTTTCACTTCGGAA 59.412 41.667 0.00 0.00 31.22 4.30
214 215 4.150359 AGACCTAGAGTTTTCACTTCGGA 58.850 43.478 0.00 0.00 31.22 4.55
215 216 4.022242 TGAGACCTAGAGTTTTCACTTCGG 60.022 45.833 0.00 0.00 31.22 4.30
216 217 4.918583 GTGAGACCTAGAGTTTTCACTTCG 59.081 45.833 15.05 0.00 38.93 3.79
217 218 5.231702 GGTGAGACCTAGAGTTTTCACTTC 58.768 45.833 18.27 8.46 40.49 3.01
218 219 5.216614 GGTGAGACCTAGAGTTTTCACTT 57.783 43.478 18.27 0.00 40.49 3.16
219 220 4.875561 GGTGAGACCTAGAGTTTTCACT 57.124 45.455 18.27 0.00 40.49 3.41
232 233 1.069668 ACAACCAACGTAGGTGAGACC 59.930 52.381 10.29 0.00 42.25 3.85
233 234 2.521105 ACAACCAACGTAGGTGAGAC 57.479 50.000 10.29 0.00 42.25 3.36
234 235 2.297033 GGTACAACCAACGTAGGTGAGA 59.703 50.000 10.29 0.00 42.25 3.27
235 236 2.611224 GGGTACAACCAACGTAGGTGAG 60.611 54.545 10.29 0.00 42.25 3.51
236 237 1.344114 GGGTACAACCAACGTAGGTGA 59.656 52.381 10.29 0.00 42.25 4.02
237 238 1.799544 GGGTACAACCAACGTAGGTG 58.200 55.000 2.17 2.17 42.25 4.00
238 239 0.318120 CGGGTACAACCAACGTAGGT 59.682 55.000 0.00 0.00 45.91 3.08
239 240 0.602562 TCGGGTACAACCAACGTAGG 59.397 55.000 0.00 0.00 41.02 3.18
240 241 1.000385 TGTCGGGTACAACCAACGTAG 60.000 52.381 0.00 0.00 41.02 3.51
241 242 1.035923 TGTCGGGTACAACCAACGTA 58.964 50.000 0.00 0.00 41.02 3.57
242 243 0.177604 TTGTCGGGTACAACCAACGT 59.822 50.000 0.00 0.00 43.22 3.99
243 244 2.989196 TTGTCGGGTACAACCAACG 58.011 52.632 0.00 0.00 43.22 4.10
250 251 1.626321 ACACCATCATTGTCGGGTACA 59.374 47.619 0.00 0.00 35.88 2.90
251 252 2.396590 ACACCATCATTGTCGGGTAC 57.603 50.000 0.00 0.00 31.05 3.34
252 253 2.675603 CGAACACCATCATTGTCGGGTA 60.676 50.000 0.00 0.00 31.05 3.69
253 254 1.821216 GAACACCATCATTGTCGGGT 58.179 50.000 0.00 0.00 0.00 5.28
254 255 0.726827 CGAACACCATCATTGTCGGG 59.273 55.000 0.00 0.00 0.00 5.14
255 256 1.393539 GTCGAACACCATCATTGTCGG 59.606 52.381 0.00 0.00 0.00 4.79
256 257 2.337583 AGTCGAACACCATCATTGTCG 58.662 47.619 0.00 0.00 0.00 4.35
257 258 3.125316 GGAAGTCGAACACCATCATTGTC 59.875 47.826 0.00 0.00 0.00 3.18
258 259 3.074412 GGAAGTCGAACACCATCATTGT 58.926 45.455 0.00 0.00 0.00 2.71
259 260 3.338249 AGGAAGTCGAACACCATCATTG 58.662 45.455 0.00 0.00 0.00 2.82
260 261 3.703001 AGGAAGTCGAACACCATCATT 57.297 42.857 0.00 0.00 0.00 2.57
261 262 3.118738 GGTAGGAAGTCGAACACCATCAT 60.119 47.826 0.00 0.00 0.00 2.45
262 263 2.232941 GGTAGGAAGTCGAACACCATCA 59.767 50.000 0.00 0.00 0.00 3.07
263 264 2.418334 GGGTAGGAAGTCGAACACCATC 60.418 54.545 0.00 0.00 0.00 3.51
264 265 1.553704 GGGTAGGAAGTCGAACACCAT 59.446 52.381 0.00 0.00 0.00 3.55
265 266 0.971386 GGGTAGGAAGTCGAACACCA 59.029 55.000 0.00 0.00 0.00 4.17
266 267 1.264295 AGGGTAGGAAGTCGAACACC 58.736 55.000 0.00 0.00 0.00 4.16
267 268 3.397849 AAAGGGTAGGAAGTCGAACAC 57.602 47.619 0.00 0.00 0.00 3.32
268 269 4.131596 CAAAAAGGGTAGGAAGTCGAACA 58.868 43.478 0.00 0.00 0.00 3.18
269 270 3.501062 CCAAAAAGGGTAGGAAGTCGAAC 59.499 47.826 0.00 0.00 0.00 3.95
270 271 3.391955 TCCAAAAAGGGTAGGAAGTCGAA 59.608 43.478 0.00 0.00 38.24 3.71
271 272 2.974099 TCCAAAAAGGGTAGGAAGTCGA 59.026 45.455 0.00 0.00 38.24 4.20
272 273 3.335579 CTCCAAAAAGGGTAGGAAGTCG 58.664 50.000 0.00 0.00 38.24 4.18
273 274 3.687125 CCTCCAAAAAGGGTAGGAAGTC 58.313 50.000 0.00 0.00 38.24 3.01
274 275 2.225041 GCCTCCAAAAAGGGTAGGAAGT 60.225 50.000 0.00 0.00 36.88 3.01
275 276 2.225017 TGCCTCCAAAAAGGGTAGGAAG 60.225 50.000 0.00 0.00 36.88 3.46
276 277 1.783979 TGCCTCCAAAAAGGGTAGGAA 59.216 47.619 0.00 0.00 36.88 3.36
277 278 1.451449 TGCCTCCAAAAAGGGTAGGA 58.549 50.000 0.00 0.00 36.88 2.94
278 279 2.532250 ATGCCTCCAAAAAGGGTAGG 57.468 50.000 0.00 0.00 36.88 3.18
279 280 3.617288 GCAAATGCCTCCAAAAAGGGTAG 60.617 47.826 0.00 0.00 36.88 3.18
280 281 2.301583 GCAAATGCCTCCAAAAAGGGTA 59.698 45.455 0.00 0.00 36.88 3.69
281 282 1.072173 GCAAATGCCTCCAAAAAGGGT 59.928 47.619 0.00 0.00 36.88 4.34
282 283 1.072015 TGCAAATGCCTCCAAAAAGGG 59.928 47.619 2.46 0.00 41.18 3.95
283 284 2.547299 TGCAAATGCCTCCAAAAAGG 57.453 45.000 2.46 0.00 41.18 3.11
284 285 3.404899 ACATGCAAATGCCTCCAAAAAG 58.595 40.909 2.46 0.00 41.18 2.27
285 286 3.488778 ACATGCAAATGCCTCCAAAAA 57.511 38.095 2.46 0.00 41.18 1.94
286 287 3.577848 ACTACATGCAAATGCCTCCAAAA 59.422 39.130 2.46 0.00 41.18 2.44
287 288 3.164268 ACTACATGCAAATGCCTCCAAA 58.836 40.909 2.46 0.00 41.18 3.28
288 289 2.806434 ACTACATGCAAATGCCTCCAA 58.194 42.857 2.46 0.00 41.18 3.53
289 290 2.512692 ACTACATGCAAATGCCTCCA 57.487 45.000 2.46 0.00 41.18 3.86
290 291 3.514645 CAAACTACATGCAAATGCCTCC 58.485 45.455 2.46 0.00 41.18 4.30
291 292 2.925563 GCAAACTACATGCAAATGCCTC 59.074 45.455 2.46 0.00 43.29 4.70
292 293 2.564062 AGCAAACTACATGCAAATGCCT 59.436 40.909 2.46 0.00 46.22 4.75
293 294 2.925563 GAGCAAACTACATGCAAATGCC 59.074 45.455 2.46 0.00 46.22 4.40
294 295 3.577667 TGAGCAAACTACATGCAAATGC 58.422 40.909 0.00 0.00 46.22 3.56
295 296 5.050644 TCTGAGCAAACTACATGCAAATG 57.949 39.130 0.00 0.00 46.22 2.32
296 297 5.710513 TTCTGAGCAAACTACATGCAAAT 57.289 34.783 0.00 0.00 46.22 2.32
297 298 5.710513 ATTCTGAGCAAACTACATGCAAA 57.289 34.783 0.00 0.00 46.22 3.68
298 299 5.710513 AATTCTGAGCAAACTACATGCAA 57.289 34.783 0.00 0.00 46.22 4.08
299 300 7.395190 AATAATTCTGAGCAAACTACATGCA 57.605 32.000 0.00 0.00 46.22 3.96
300 301 8.693542 AAAATAATTCTGAGCAAACTACATGC 57.306 30.769 0.00 0.00 44.15 4.06
301 302 9.294030 GGAAAATAATTCTGAGCAAACTACATG 57.706 33.333 0.00 0.00 0.00 3.21
302 303 9.023962 TGGAAAATAATTCTGAGCAAACTACAT 57.976 29.630 0.00 0.00 0.00 2.29
303 304 8.402798 TGGAAAATAATTCTGAGCAAACTACA 57.597 30.769 0.00 0.00 0.00 2.74
304 305 7.970614 CCTGGAAAATAATTCTGAGCAAACTAC 59.029 37.037 0.00 0.00 0.00 2.73
305 306 7.122650 CCCTGGAAAATAATTCTGAGCAAACTA 59.877 37.037 0.00 0.00 0.00 2.24
306 307 6.071165 CCCTGGAAAATAATTCTGAGCAAACT 60.071 38.462 0.00 0.00 0.00 2.66
307 308 6.101997 CCCTGGAAAATAATTCTGAGCAAAC 58.898 40.000 0.00 0.00 0.00 2.93
308 309 5.779771 ACCCTGGAAAATAATTCTGAGCAAA 59.220 36.000 0.00 0.00 0.00 3.68
309 310 5.185635 CACCCTGGAAAATAATTCTGAGCAA 59.814 40.000 0.00 0.00 0.00 3.91
310 311 4.706476 CACCCTGGAAAATAATTCTGAGCA 59.294 41.667 0.00 0.00 0.00 4.26
311 312 4.949856 TCACCCTGGAAAATAATTCTGAGC 59.050 41.667 0.00 0.00 0.00 4.26
312 313 7.466746 TTTCACCCTGGAAAATAATTCTGAG 57.533 36.000 0.00 0.00 34.05 3.35
313 314 7.256154 GGTTTTCACCCTGGAAAATAATTCTGA 60.256 37.037 0.00 0.00 45.43 3.27
314 315 6.873605 GGTTTTCACCCTGGAAAATAATTCTG 59.126 38.462 0.00 0.00 45.43 3.02
315 316 7.004555 GGTTTTCACCCTGGAAAATAATTCT 57.995 36.000 0.00 0.00 45.43 2.40
330 331 3.832490 AGGCTAGATTTTGGGTTTTCACC 59.168 43.478 0.00 0.00 43.37 4.02
331 332 4.082190 GGAGGCTAGATTTTGGGTTTTCAC 60.082 45.833 0.00 0.00 0.00 3.18
332 333 4.086457 GGAGGCTAGATTTTGGGTTTTCA 58.914 43.478 0.00 0.00 0.00 2.69
333 334 4.086457 TGGAGGCTAGATTTTGGGTTTTC 58.914 43.478 0.00 0.00 0.00 2.29
334 335 4.126520 TGGAGGCTAGATTTTGGGTTTT 57.873 40.909 0.00 0.00 0.00 2.43
338 339 2.091665 ACCATGGAGGCTAGATTTTGGG 60.092 50.000 21.47 0.00 43.14 4.12
354 355 4.624015 GTCAATTGCCATATCCAACCATG 58.376 43.478 0.00 0.00 0.00 3.66
356 357 2.687425 CGTCAATTGCCATATCCAACCA 59.313 45.455 0.00 0.00 0.00 3.67
359 360 2.687425 CACCGTCAATTGCCATATCCAA 59.313 45.455 0.00 0.00 0.00 3.53
368 369 0.865769 ACGAGAACACCGTCAATTGC 59.134 50.000 0.00 0.00 34.97 3.56
370 371 2.234300 ACACGAGAACACCGTCAATT 57.766 45.000 0.00 0.00 38.29 2.32
372 373 1.282817 CAACACGAGAACACCGTCAA 58.717 50.000 0.00 0.00 38.29 3.18
376 377 1.219522 GGGACAACACGAGAACACCG 61.220 60.000 0.00 0.00 0.00 4.94
381 382 1.420430 AGAAGGGGACAACACGAGAA 58.580 50.000 0.00 0.00 0.00 2.87
393 394 2.042686 TCGATGATTGCAAGAAGGGG 57.957 50.000 4.94 0.00 0.00 4.79
403 404 4.611310 AGTGCTTCAACATCGATGATTG 57.389 40.909 31.33 26.46 0.00 2.67
411 412 4.474226 ACGAGAAAAGTGCTTCAACATC 57.526 40.909 0.00 0.00 0.00 3.06
412 413 5.057149 ACTACGAGAAAAGTGCTTCAACAT 58.943 37.500 0.00 0.00 0.00 2.71
413 414 4.439057 ACTACGAGAAAAGTGCTTCAACA 58.561 39.130 0.00 0.00 0.00 3.33
430 431 1.162698 TGACAGAACTCCGGACTACG 58.837 55.000 0.00 0.00 43.80 3.51
431 432 2.753452 TGATGACAGAACTCCGGACTAC 59.247 50.000 0.00 0.00 0.00 2.73
432 433 3.017442 CTGATGACAGAACTCCGGACTA 58.983 50.000 0.00 0.00 46.03 2.59
433 434 1.821753 CTGATGACAGAACTCCGGACT 59.178 52.381 0.00 0.00 46.03 3.85
436 437 1.404717 CCACTGATGACAGAACTCCGG 60.405 57.143 0.00 0.00 46.03 5.14
446 447 2.297701 ACAACAACCACCACTGATGAC 58.702 47.619 0.00 0.00 0.00 3.06
452 453 1.476488 GCTTCAACAACAACCACCACT 59.524 47.619 0.00 0.00 0.00 4.00
454 455 1.846007 AGCTTCAACAACAACCACCA 58.154 45.000 0.00 0.00 0.00 4.17
458 459 2.292103 TGCAAGCTTCAACAACAACC 57.708 45.000 0.00 0.00 0.00 3.77
463 464 1.925229 GCAGTTGCAAGCTTCAACAA 58.075 45.000 27.97 17.86 44.50 2.83
476 477 1.959747 CGAACTCAAGCATGCAGTTG 58.040 50.000 22.41 17.51 31.48 3.16
495 496 4.103357 GCATCTGAATGTCATGTTGAAGC 58.897 43.478 0.00 0.00 35.18 3.86
502 503 1.306148 AGCGGCATCTGAATGTCATG 58.694 50.000 1.45 0.00 37.34 3.07
506 507 1.825090 TGAAAGCGGCATCTGAATGT 58.175 45.000 1.45 0.00 35.18 2.71
511 512 2.712057 AAAGTTGAAAGCGGCATCTG 57.288 45.000 1.45 0.00 0.00 2.90
512 513 2.887152 AGAAAAGTTGAAAGCGGCATCT 59.113 40.909 1.45 0.00 0.00 2.90
517 518 5.339990 TGAGAAAAGAAAAGTTGAAAGCGG 58.660 37.500 0.00 0.00 0.00 5.52
519 520 6.808704 ACACTGAGAAAAGAAAAGTTGAAAGC 59.191 34.615 0.00 0.00 0.00 3.51
538 539 2.029518 CGCACAGCCTCACACTGA 59.970 61.111 0.00 0.00 38.55 3.41
539 540 3.720193 GCGCACAGCCTCACACTG 61.720 66.667 0.30 0.00 40.81 3.66
553 554 4.719616 GTCAAGACCAACGCGCGC 62.720 66.667 32.58 23.91 0.00 6.86
554 555 1.076533 ATAGTCAAGACCAACGCGCG 61.077 55.000 30.96 30.96 0.00 6.86
555 556 0.370273 CATAGTCAAGACCAACGCGC 59.630 55.000 5.73 0.00 0.00 6.86
556 557 1.390123 CACATAGTCAAGACCAACGCG 59.610 52.381 3.53 3.53 0.00 6.01
557 558 1.128692 GCACATAGTCAAGACCAACGC 59.871 52.381 0.00 0.00 0.00 4.84
558 559 2.412870 TGCACATAGTCAAGACCAACG 58.587 47.619 0.00 0.00 0.00 4.10
559 560 4.697352 AGAATGCACATAGTCAAGACCAAC 59.303 41.667 0.00 0.00 0.00 3.77
560 561 4.910195 AGAATGCACATAGTCAAGACCAA 58.090 39.130 0.00 0.00 0.00 3.67
561 562 4.558226 AGAATGCACATAGTCAAGACCA 57.442 40.909 0.00 0.00 0.00 4.02
562 563 7.559590 AATTAGAATGCACATAGTCAAGACC 57.440 36.000 0.00 0.00 0.00 3.85
565 566 9.425893 CGTAAAATTAGAATGCACATAGTCAAG 57.574 33.333 0.00 0.00 0.00 3.02
574 575 9.698617 CTTAACCTACGTAAAATTAGAATGCAC 57.301 33.333 0.00 0.00 0.00 4.57
587 588 8.885494 AATAAACACACACTTAACCTACGTAA 57.115 30.769 0.00 0.00 0.00 3.18
591 592 8.943002 AGCATAATAAACACACACTTAACCTAC 58.057 33.333 0.00 0.00 0.00 3.18
594 595 8.079809 ACAAGCATAATAAACACACACTTAACC 58.920 33.333 0.00 0.00 0.00 2.85
629 630 6.985117 ACTTTATTGATTCATAATGCCGCAT 58.015 32.000 0.00 0.00 0.00 4.73
632 633 7.306749 GGCAAACTTTATTGATTCATAATGCCG 60.307 37.037 0.00 0.00 37.87 5.69
634 635 8.652810 AGGCAAACTTTATTGATTCATAATGC 57.347 30.769 0.00 0.00 31.84 3.56
665 666 9.638239 GGTCAGCTTTCATTGTTTATATTTTCA 57.362 29.630 0.00 0.00 0.00 2.69
671 672 6.721318 AGGAGGTCAGCTTTCATTGTTTATA 58.279 36.000 0.00 0.00 0.00 0.98
672 673 5.574188 AGGAGGTCAGCTTTCATTGTTTAT 58.426 37.500 0.00 0.00 0.00 1.40
674 675 3.837355 AGGAGGTCAGCTTTCATTGTTT 58.163 40.909 0.00 0.00 0.00 2.83
675 676 3.515602 AGGAGGTCAGCTTTCATTGTT 57.484 42.857 0.00 0.00 0.00 2.83
676 677 4.640771 TTAGGAGGTCAGCTTTCATTGT 57.359 40.909 0.00 0.00 0.00 2.71
677 678 5.006386 AGTTTAGGAGGTCAGCTTTCATTG 58.994 41.667 0.00 0.00 0.00 2.82
685 686 2.745515 AACGAGTTTAGGAGGTCAGC 57.254 50.000 0.00 0.00 0.00 4.26
699 700 3.996480 AGTTCTTGGAGAGGAAAACGAG 58.004 45.455 0.00 0.00 0.00 4.18
733 734 7.416664 GGCATCAGCATAGTTTATTTCTTTGGA 60.417 37.037 0.00 0.00 44.61 3.53
734 735 6.698766 GGCATCAGCATAGTTTATTTCTTTGG 59.301 38.462 0.00 0.00 44.61 3.28
736 737 6.608808 AGGGCATCAGCATAGTTTATTTCTTT 59.391 34.615 0.00 0.00 44.61 2.52
737 738 6.131961 AGGGCATCAGCATAGTTTATTTCTT 58.868 36.000 0.00 0.00 44.61 2.52
738 739 5.699143 AGGGCATCAGCATAGTTTATTTCT 58.301 37.500 0.00 0.00 44.61 2.52
739 740 5.048434 GGAGGGCATCAGCATAGTTTATTTC 60.048 44.000 0.08 0.00 44.61 2.17
740 741 4.829492 GGAGGGCATCAGCATAGTTTATTT 59.171 41.667 0.08 0.00 44.61 1.40
749 750 1.578215 AAGTGGGAGGGCATCAGCAT 61.578 55.000 0.08 0.00 44.61 3.79
751 752 1.452833 GAAGTGGGAGGGCATCAGC 60.453 63.158 0.08 0.00 41.10 4.26
766 767 5.292101 GGAAATCTGTGATAGTGAACGGAAG 59.708 44.000 0.00 0.00 35.40 3.46
767 768 5.046591 AGGAAATCTGTGATAGTGAACGGAA 60.047 40.000 0.00 0.00 35.40 4.30
783 784 2.887152 GTGTGTTTGCTGGAGGAAATCT 59.113 45.455 0.00 0.00 37.67 2.40
795 797 0.730265 TTCCGTGACAGTGTGTTTGC 59.270 50.000 0.00 0.00 0.00 3.68
818 820 4.803426 CGCTGGTCAGGAGCCGAC 62.803 72.222 0.00 0.00 32.41 4.79
820 822 4.069232 TTCGCTGGTCAGGAGCCG 62.069 66.667 0.00 0.00 32.41 5.52
878 887 2.103042 CCGAGCTTCTTTCCGGCTG 61.103 63.158 0.00 0.00 36.37 4.85
1185 2777 0.637743 GAAGGGAGGGGTCTAGGAGT 59.362 60.000 0.00 0.00 0.00 3.85
1445 3042 1.617018 TAGAACCTGCTGGCGCTGAT 61.617 55.000 7.64 0.00 37.28 2.90
1597 3194 2.693591 TCCCGTATCCATGTTCTCAGAC 59.306 50.000 0.00 0.00 0.00 3.51
1603 3200 1.567504 CGTGTCCCGTATCCATGTTC 58.432 55.000 0.00 0.00 0.00 3.18
1661 3285 2.502142 TGAGGCATGCTTTGATGACT 57.498 45.000 18.92 2.75 44.97 3.41
1663 3287 3.887110 CCTATTGAGGCATGCTTTGATGA 59.113 43.478 18.92 0.00 35.54 2.92
1664 3288 3.887110 TCCTATTGAGGCATGCTTTGATG 59.113 43.478 18.92 3.10 43.40 3.07
1665 3289 4.174704 TCCTATTGAGGCATGCTTTGAT 57.825 40.909 18.92 10.49 43.40 2.57
1692 3318 3.260632 ACCAAGTGCAAGAAAACAAAGGT 59.739 39.130 0.00 0.00 0.00 3.50
1747 3375 8.946085 TCGATGCACTGATTAAAAGAATAAACT 58.054 29.630 0.00 0.00 0.00 2.66
1752 3380 6.820656 AGAGTCGATGCACTGATTAAAAGAAT 59.179 34.615 0.00 0.00 0.00 2.40
1755 3384 5.578336 TGAGAGTCGATGCACTGATTAAAAG 59.422 40.000 0.00 0.00 0.00 2.27
1758 3387 4.158579 AGTGAGAGTCGATGCACTGATTAA 59.841 41.667 10.32 0.00 39.88 1.40
1779 3411 6.463995 TGTTTAATTGAAAGGTGAGCAAGT 57.536 33.333 0.00 0.00 0.00 3.16
1857 3490 6.307155 CCTCAATAGTAAAGACGCACTTTTG 58.693 40.000 12.17 4.40 45.22 2.44
1861 3494 3.767673 TCCCTCAATAGTAAAGACGCACT 59.232 43.478 0.00 0.00 0.00 4.40
1904 3542 4.809426 GTGATACGTTTTGGATACCTGAGG 59.191 45.833 0.00 0.00 0.00 3.86
1905 3543 5.416083 TGTGATACGTTTTGGATACCTGAG 58.584 41.667 0.00 0.00 0.00 3.35
1990 3637 0.178970 ACTGCCCCGATACCGTATCT 60.179 55.000 15.09 0.00 33.01 1.98
2081 3737 1.200252 CCTGTGACGGTGTGAGTAGAG 59.800 57.143 0.00 0.00 0.00 2.43
2082 3738 1.202842 TCCTGTGACGGTGTGAGTAGA 60.203 52.381 0.00 0.00 0.00 2.59
2083 3739 1.244816 TCCTGTGACGGTGTGAGTAG 58.755 55.000 0.00 0.00 0.00 2.57
2084 3740 1.816835 GATCCTGTGACGGTGTGAGTA 59.183 52.381 0.00 0.00 0.00 2.59
2085 3741 0.603569 GATCCTGTGACGGTGTGAGT 59.396 55.000 0.00 0.00 0.00 3.41
2089 3745 0.038526 GAACGATCCTGTGACGGTGT 60.039 55.000 0.00 0.00 0.00 4.16
2091 3747 0.966920 AAGAACGATCCTGTGACGGT 59.033 50.000 0.00 0.00 0.00 4.83
2100 3756 2.866762 CTCCCGATGAAAAGAACGATCC 59.133 50.000 0.00 0.00 0.00 3.36
2105 3761 6.371825 ACAGATTTACTCCCGATGAAAAGAAC 59.628 38.462 0.00 0.00 0.00 3.01
2112 3768 6.984474 GTCAAATACAGATTTACTCCCGATGA 59.016 38.462 0.00 0.00 33.33 2.92
2150 3836 3.253188 ACCAAAACGAGGAACATCACATG 59.747 43.478 0.00 0.00 0.00 3.21
2151 3837 3.253188 CACCAAAACGAGGAACATCACAT 59.747 43.478 0.00 0.00 0.00 3.21
2160 3846 1.153066 TGCAGCACCAAAACGAGGA 60.153 52.632 0.00 0.00 0.00 3.71
2172 3858 0.608856 CACATTGTACCCCTGCAGCA 60.609 55.000 8.66 0.00 0.00 4.41
2323 4009 5.689514 CACAGCACTAGTACTTCAGATATGC 59.310 44.000 0.00 0.00 0.00 3.14
2342 4031 4.818534 TCTGTTGACTTGAAATCACAGC 57.181 40.909 0.00 0.00 31.17 4.40
2352 4041 5.179045 AGAACTTGCATTCTGTTGACTTG 57.821 39.130 1.73 0.00 37.54 3.16
2401 4090 8.722394 GGTTGGATTGTTTTCACTTTGTTTTTA 58.278 29.630 0.00 0.00 0.00 1.52
2405 4099 5.641636 GTGGTTGGATTGTTTTCACTTTGTT 59.358 36.000 0.00 0.00 0.00 2.83
2536 5512 2.042979 ACTCCCCAACCTGCAATGTATT 59.957 45.455 0.00 0.00 0.00 1.89
2571 5569 1.420514 GTATAAACTCTGCCCTCCCCC 59.579 57.143 0.00 0.00 0.00 5.40
2572 5570 2.409570 AGTATAAACTCTGCCCTCCCC 58.590 52.381 0.00 0.00 0.00 4.81
2573 5571 4.505324 AAAGTATAAACTCTGCCCTCCC 57.495 45.455 0.00 0.00 33.75 4.30
2574 5572 7.415318 GCTTAAAAAGTATAAACTCTGCCCTCC 60.415 40.741 0.00 0.00 33.75 4.30
2575 5573 7.415318 GGCTTAAAAAGTATAAACTCTGCCCTC 60.415 40.741 0.00 0.00 33.75 4.30
2576 5574 6.377429 GGCTTAAAAAGTATAAACTCTGCCCT 59.623 38.462 0.00 0.00 33.75 5.19
2577 5575 6.152154 TGGCTTAAAAAGTATAAACTCTGCCC 59.848 38.462 0.00 0.00 33.75 5.36
2578 5576 7.153217 TGGCTTAAAAAGTATAAACTCTGCC 57.847 36.000 0.00 0.00 33.75 4.85
2579 5577 8.912658 GTTTGGCTTAAAAAGTATAAACTCTGC 58.087 33.333 0.00 0.00 33.75 4.26
2615 5613 6.312672 GCAGTTTGTATGGTGTTTTCTGTTTT 59.687 34.615 0.00 0.00 0.00 2.43
2616 5614 5.810074 GCAGTTTGTATGGTGTTTTCTGTTT 59.190 36.000 0.00 0.00 0.00 2.83
2617 5615 5.105554 TGCAGTTTGTATGGTGTTTTCTGTT 60.106 36.000 0.00 0.00 0.00 3.16
2618 5616 4.400884 TGCAGTTTGTATGGTGTTTTCTGT 59.599 37.500 0.00 0.00 0.00 3.41
2718 5717 9.884636 TGTAATTTTAGAAGCTGCTCTATGTAA 57.115 29.630 0.00 0.00 0.00 2.41
2762 5761 8.520351 GCTTGTGTAAGTTGTAATATTCCCTTT 58.480 33.333 0.00 0.00 36.27 3.11
2766 5765 8.947115 AGAAGCTTGTGTAAGTTGTAATATTCC 58.053 33.333 2.10 0.00 36.27 3.01
2770 5769 8.896320 TGAAGAAGCTTGTGTAAGTTGTAATA 57.104 30.769 2.10 0.00 36.27 0.98
2898 5897 7.659652 AGCTTGTGTAAGTTGTAATCTTCTC 57.340 36.000 0.00 0.00 36.27 2.87
2987 5988 2.393271 AGCTGTGGATCAGTACTTGC 57.607 50.000 0.00 0.70 45.23 4.01
2998 5999 4.038042 CGTATGGATTTCTCTAGCTGTGGA 59.962 45.833 0.00 0.00 0.00 4.02
3094 6112 3.807622 GGTCTTCACATGTTCGTTCTTCA 59.192 43.478 0.00 0.00 0.00 3.02
3400 6433 3.792736 ATGTACCCGCACGCCCAT 61.793 61.111 0.00 0.00 0.00 4.00
3403 6436 1.068417 TATCATGTACCCGCACGCC 59.932 57.895 0.00 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.