Multiple sequence alignment - TraesCS7B01G321800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G321800 chr7B 100.000 3141 0 0 1 3141 572508667 572505527 0.000000e+00 5801.0
1 TraesCS7B01G321800 chr7B 86.400 1375 138 15 1773 3107 572496029 572494664 0.000000e+00 1458.0
2 TraesCS7B01G321800 chr7B 83.372 866 83 27 1 833 382615682 382614845 0.000000e+00 745.0
3 TraesCS7B01G321800 chr7B 100.000 243 0 0 3513 3755 572505155 572504913 2.060000e-122 449.0
4 TraesCS7B01G321800 chr7B 87.179 156 19 1 3516 3671 572494380 572494226 3.850000e-40 176.0
5 TraesCS7B01G321800 chr7B 88.889 90 10 0 3666 3755 572507084 572506995 1.100000e-20 111.0
6 TraesCS7B01G321800 chr7B 84.444 90 14 0 3666 3755 34168831 34168920 5.170000e-14 89.8
7 TraesCS7B01G321800 chr7B 91.667 48 4 0 832 879 468247109 468247062 2.420000e-07 67.6
8 TraesCS7B01G321800 chr7D 91.274 2269 135 35 925 3141 531977546 531975289 0.000000e+00 3035.0
9 TraesCS7B01G321800 chr7D 82.734 1697 272 13 1058 2736 193935056 193936749 0.000000e+00 1491.0
10 TraesCS7B01G321800 chr7D 91.919 891 59 4 964 1854 531975032 531974155 0.000000e+00 1234.0
11 TraesCS7B01G321800 chr7D 90.000 90 9 0 3666 3755 531976885 531976796 2.370000e-22 117.0
12 TraesCS7B01G321800 chr2A 85.727 2235 253 46 884 3065 74253916 74251695 0.000000e+00 2300.0
13 TraesCS7B01G321800 chr2A 84.453 804 88 24 99 879 745692918 745693707 0.000000e+00 758.0
14 TraesCS7B01G321800 chr2A 86.667 90 12 0 3666 3755 74253205 74253116 2.390000e-17 100.0
15 TraesCS7B01G321800 chr7A 91.227 1345 87 17 1670 2987 612532264 612530924 0.000000e+00 1801.0
16 TraesCS7B01G321800 chr7A 81.808 1759 289 22 998 2736 203525510 203527257 0.000000e+00 1447.0
17 TraesCS7B01G321800 chr7A 87.704 1163 100 22 2008 3141 612527933 612526785 0.000000e+00 1315.0
18 TraesCS7B01G321800 chr7A 83.391 867 88 30 1 825 42737108 42736256 0.000000e+00 752.0
19 TraesCS7B01G321800 chr7A 79.439 856 93 47 68 879 139136673 139137489 2.570000e-146 529.0
20 TraesCS7B01G321800 chr7A 83.333 90 15 0 3666 3755 85724820 85724909 2.400000e-12 84.2
21 TraesCS7B01G321800 chr7A 95.833 48 1 1 874 921 612538020 612537974 4.020000e-10 76.8
22 TraesCS7B01G321800 chr7A 93.617 47 3 0 832 878 684253058 684253104 1.870000e-08 71.3
23 TraesCS7B01G321800 chr5A 82.827 1712 271 13 1062 2755 138430525 138428819 0.000000e+00 1511.0
24 TraesCS7B01G321800 chr5A 82.568 1721 271 17 1057 2758 538349105 538350815 0.000000e+00 1489.0
25 TraesCS7B01G321800 chr5A 93.333 45 3 0 836 880 495050750 495050706 2.420000e-07 67.6
26 TraesCS7B01G321800 chr5B 82.866 1675 262 13 1058 2715 513711511 513713177 0.000000e+00 1480.0
27 TraesCS7B01G321800 chr5B 82.189 1718 272 24 1062 2755 137112675 137110968 0.000000e+00 1447.0
28 TraesCS7B01G321800 chr5B 85.545 505 51 14 268 761 141159117 141158624 3.350000e-140 508.0
29 TraesCS7B01G321800 chr5B 80.000 285 36 8 1 270 141161267 141160989 1.380000e-44 191.0
30 TraesCS7B01G321800 chr5B 83.333 90 15 0 3666 3755 513712049 513712138 2.400000e-12 84.2
31 TraesCS7B01G321800 chr5B 80.000 90 18 0 3666 3755 513647678 513647767 2.420000e-07 67.6
32 TraesCS7B01G321800 chr1A 81.579 1748 269 30 1034 2740 99318644 99320379 0.000000e+00 1395.0
33 TraesCS7B01G321800 chr1A 83.469 859 102 20 1 837 13488833 13487993 0.000000e+00 763.0
34 TraesCS7B01G321800 chr1D 81.286 1742 273 31 1034 2736 80842461 80844188 0.000000e+00 1362.0
35 TraesCS7B01G321800 chr1D 91.667 48 4 0 832 879 92353633 92353586 2.420000e-07 67.6
36 TraesCS7B01G321800 chr3B 82.046 919 112 23 1 879 739686160 739685255 0.000000e+00 734.0
37 TraesCS7B01G321800 chr3B 87.069 116 15 0 475 590 659452028 659451913 8.460000e-27 132.0
38 TraesCS7B01G321800 chr6B 82.407 864 98 25 1 837 45731549 45730713 0.000000e+00 704.0
39 TraesCS7B01G321800 chr4A 82.143 896 88 30 1 879 611442252 611441412 0.000000e+00 702.0
40 TraesCS7B01G321800 chr4A 84.348 115 18 0 472 586 502900461 502900575 3.070000e-21 113.0
41 TraesCS7B01G321800 chr4A 92.000 50 4 0 833 882 79089033 79089082 1.870000e-08 71.3
42 TraesCS7B01G321800 chr4B 81.698 907 101 28 1 879 167385155 167384286 0.000000e+00 695.0
43 TraesCS7B01G321800 chr3A 82.328 696 73 27 217 879 639643093 639643771 3.280000e-155 558.0
44 TraesCS7B01G321800 chr3A 86.154 65 6 3 832 894 28584463 28584526 2.420000e-07 67.6
45 TraesCS7B01G321800 chr5D 84.444 90 14 0 3666 3755 424597509 424597598 5.170000e-14 89.8
46 TraesCS7B01G321800 chrUn 83.333 90 15 0 3666 3755 82636816 82636727 2.400000e-12 84.2
47 TraesCS7B01G321800 chr6A 97.778 45 1 0 836 880 207827973 207828017 1.120000e-10 78.7
48 TraesCS7B01G321800 chr6A 91.667 48 4 0 832 879 21891147 21891100 2.420000e-07 67.6
49 TraesCS7B01G321800 chr2B 95.455 44 2 0 836 879 381908906 381908863 1.870000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G321800 chr7B 572504913 572508667 3754 True 2120.333333 5801 96.296333 1 3755 3 chr7B.!!$R4 3754
1 TraesCS7B01G321800 chr7B 572494226 572496029 1803 True 817.000000 1458 86.789500 1773 3671 2 chr7B.!!$R3 1898
2 TraesCS7B01G321800 chr7B 382614845 382615682 837 True 745.000000 745 83.372000 1 833 1 chr7B.!!$R1 832
3 TraesCS7B01G321800 chr7D 193935056 193936749 1693 False 1491.000000 1491 82.734000 1058 2736 1 chr7D.!!$F1 1678
4 TraesCS7B01G321800 chr7D 531974155 531977546 3391 True 1462.000000 3035 91.064333 925 3755 3 chr7D.!!$R1 2830
5 TraesCS7B01G321800 chr2A 74251695 74253916 2221 True 1200.000000 2300 86.197000 884 3755 2 chr2A.!!$R1 2871
6 TraesCS7B01G321800 chr2A 745692918 745693707 789 False 758.000000 758 84.453000 99 879 1 chr2A.!!$F1 780
7 TraesCS7B01G321800 chr7A 612526785 612532264 5479 True 1558.000000 1801 89.465500 1670 3141 2 chr7A.!!$R3 1471
8 TraesCS7B01G321800 chr7A 203525510 203527257 1747 False 1447.000000 1447 81.808000 998 2736 1 chr7A.!!$F3 1738
9 TraesCS7B01G321800 chr7A 42736256 42737108 852 True 752.000000 752 83.391000 1 825 1 chr7A.!!$R1 824
10 TraesCS7B01G321800 chr7A 139136673 139137489 816 False 529.000000 529 79.439000 68 879 1 chr7A.!!$F2 811
11 TraesCS7B01G321800 chr5A 138428819 138430525 1706 True 1511.000000 1511 82.827000 1062 2755 1 chr5A.!!$R1 1693
12 TraesCS7B01G321800 chr5A 538349105 538350815 1710 False 1489.000000 1489 82.568000 1057 2758 1 chr5A.!!$F1 1701
13 TraesCS7B01G321800 chr5B 137110968 137112675 1707 True 1447.000000 1447 82.189000 1062 2755 1 chr5B.!!$R1 1693
14 TraesCS7B01G321800 chr5B 513711511 513713177 1666 False 782.100000 1480 83.099500 1058 3755 2 chr5B.!!$F2 2697
15 TraesCS7B01G321800 chr5B 141158624 141161267 2643 True 349.500000 508 82.772500 1 761 2 chr5B.!!$R2 760
16 TraesCS7B01G321800 chr1A 99318644 99320379 1735 False 1395.000000 1395 81.579000 1034 2740 1 chr1A.!!$F1 1706
17 TraesCS7B01G321800 chr1A 13487993 13488833 840 True 763.000000 763 83.469000 1 837 1 chr1A.!!$R1 836
18 TraesCS7B01G321800 chr1D 80842461 80844188 1727 False 1362.000000 1362 81.286000 1034 2736 1 chr1D.!!$F1 1702
19 TraesCS7B01G321800 chr3B 739685255 739686160 905 True 734.000000 734 82.046000 1 879 1 chr3B.!!$R2 878
20 TraesCS7B01G321800 chr6B 45730713 45731549 836 True 704.000000 704 82.407000 1 837 1 chr6B.!!$R1 836
21 TraesCS7B01G321800 chr4A 611441412 611442252 840 True 702.000000 702 82.143000 1 879 1 chr4A.!!$R1 878
22 TraesCS7B01G321800 chr4B 167384286 167385155 869 True 695.000000 695 81.698000 1 879 1 chr4B.!!$R1 878
23 TraesCS7B01G321800 chr3A 639643093 639643771 678 False 558.000000 558 82.328000 217 879 1 chr3A.!!$F2 662

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
670 2649 0.037232 AGTTCTTTTCTCGGGGAGCG 60.037 55.0 0.00 0.0 0.0 5.03 F
1696 3717 0.036875 GGTAACTCTGGCCTTGCAGT 59.963 55.0 3.32 0.0 0.0 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2488 4658 0.892755 TACTTCGAGATGGCACCGTT 59.107 50.0 0.0 0.0 0.0 4.44 R
3118 9461 0.664761 CATCATCCGCCGCTTTTGAT 59.335 50.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 40 5.952347 ACATACCTGTAGATGAAGTGTCAGA 59.048 40.000 0.00 0.00 33.16 3.27
52 55 9.784531 TGAAGTGTCAGATTAAAAGAAGAGAAT 57.215 29.630 0.00 0.00 0.00 2.40
79 122 5.937111 TCCCTTACCAGTAAATAGATTGGC 58.063 41.667 0.00 0.00 33.98 4.52
80 123 5.430417 TCCCTTACCAGTAAATAGATTGGCA 59.570 40.000 0.00 0.00 33.98 4.92
94 137 5.904362 AGATTGGCAAGAAATTAGGACAC 57.096 39.130 5.96 0.00 0.00 3.67
150 226 6.413018 TCAGATCAATCAAACATCGTTGAG 57.587 37.500 0.00 0.00 40.72 3.02
171 247 6.721318 TGAGCAACCAATTACCTCTTAGATT 58.279 36.000 0.00 0.00 0.00 2.40
305 2267 1.553690 TAGAAGCCTGGCACTCACCC 61.554 60.000 22.65 1.40 0.00 4.61
345 2307 0.884704 CCAACACACAGAGAACCCCG 60.885 60.000 0.00 0.00 0.00 5.73
375 2337 4.789075 CCCTGACGGTGGCGTACG 62.789 72.222 11.84 11.84 0.00 3.67
456 2435 3.637273 GCACCCCCAACGTCCTCT 61.637 66.667 0.00 0.00 0.00 3.69
458 2437 2.122547 ACCCCCAACGTCCTCTGT 60.123 61.111 0.00 0.00 0.00 3.41
460 2439 2.214216 CCCCCAACGTCCTCTGTCA 61.214 63.158 0.00 0.00 0.00 3.58
465 2444 0.663568 CAACGTCCTCTGTCACCGAC 60.664 60.000 0.00 0.00 0.00 4.79
469 2448 1.093159 GTCCTCTGTCACCGACGTAT 58.907 55.000 0.00 0.00 34.95 3.06
483 2462 1.945394 GACGTATCGGTGCTCTCCTTA 59.055 52.381 0.00 0.00 0.00 2.69
490 2469 0.253044 GGTGCTCTCCTTATGTGCCA 59.747 55.000 0.00 0.00 0.00 4.92
494 2473 0.811616 CTCTCCTTATGTGCCACCGC 60.812 60.000 0.00 0.00 0.00 5.68
528 2507 0.317436 GCTGGACGCGATCTAGAGTG 60.317 60.000 15.93 0.00 38.17 3.51
549 2528 1.069978 GTGCAGATAAGAGGGAGGAGC 59.930 57.143 0.00 0.00 0.00 4.70
553 2532 3.509442 CAGATAAGAGGGAGGAGCAGAT 58.491 50.000 0.00 0.00 0.00 2.90
554 2533 4.671831 CAGATAAGAGGGAGGAGCAGATA 58.328 47.826 0.00 0.00 0.00 1.98
556 2535 5.721000 CAGATAAGAGGGAGGAGCAGATAAT 59.279 44.000 0.00 0.00 0.00 1.28
584 2563 1.742768 GGACTGGATCCTACTGCCG 59.257 63.158 14.23 0.00 45.22 5.69
585 2564 0.755698 GGACTGGATCCTACTGCCGA 60.756 60.000 14.23 0.00 45.22 5.54
586 2565 0.386113 GACTGGATCCTACTGCCGAC 59.614 60.000 14.23 0.00 0.00 4.79
587 2566 1.360551 CTGGATCCTACTGCCGACG 59.639 63.158 14.23 0.00 0.00 5.12
588 2567 2.076622 CTGGATCCTACTGCCGACGG 62.077 65.000 14.23 10.29 0.00 4.79
599 2578 3.905678 CCGACGGCCTGGAGCTAG 61.906 72.222 0.00 0.00 43.05 3.42
600 2579 4.577246 CGACGGCCTGGAGCTAGC 62.577 72.222 6.62 6.62 43.05 3.42
601 2580 4.228567 GACGGCCTGGAGCTAGCC 62.229 72.222 12.13 2.59 43.05 3.93
604 2583 2.122813 GGCCTGGAGCTAGCCCTA 60.123 66.667 12.13 0.00 41.00 3.53
605 2584 2.213513 GGCCTGGAGCTAGCCCTAG 61.214 68.421 12.13 6.91 41.00 3.02
606 2585 1.152440 GCCTGGAGCTAGCCCTAGA 60.152 63.158 11.33 0.00 38.99 2.43
607 2586 1.468506 GCCTGGAGCTAGCCCTAGAC 61.469 65.000 11.33 0.00 38.99 2.59
608 2587 0.830023 CCTGGAGCTAGCCCTAGACC 60.830 65.000 11.33 6.47 35.21 3.85
609 2588 1.152735 TGGAGCTAGCCCTAGACCG 60.153 63.158 12.13 0.00 35.50 4.79
610 2589 2.566570 GGAGCTAGCCCTAGACCGC 61.567 68.421 12.13 0.00 35.21 5.68
611 2590 2.907917 AGCTAGCCCTAGACCGCG 60.908 66.667 12.13 0.00 35.21 6.46
612 2591 2.905880 GCTAGCCCTAGACCGCGA 60.906 66.667 8.23 0.00 35.21 5.87
613 2592 3.032339 CTAGCCCTAGACCGCGAC 58.968 66.667 8.23 0.40 35.21 5.19
614 2593 2.517875 TAGCCCTAGACCGCGACC 60.518 66.667 8.23 0.00 0.00 4.79
615 2594 3.348554 TAGCCCTAGACCGCGACCA 62.349 63.158 8.23 0.00 0.00 4.02
616 2595 4.509737 GCCCTAGACCGCGACCAC 62.510 72.222 8.23 0.00 0.00 4.16
617 2596 4.189188 CCCTAGACCGCGACCACG 62.189 72.222 8.23 0.00 42.93 4.94
631 2610 2.738480 CACGGGGTGGACGAGAAA 59.262 61.111 0.00 0.00 34.93 2.52
632 2611 1.374252 CACGGGGTGGACGAGAAAG 60.374 63.158 0.00 0.00 34.93 2.62
633 2612 2.264794 CGGGGTGGACGAGAAAGG 59.735 66.667 0.00 0.00 0.00 3.11
634 2613 2.280552 CGGGGTGGACGAGAAAGGA 61.281 63.158 0.00 0.00 0.00 3.36
635 2614 1.614241 CGGGGTGGACGAGAAAGGAT 61.614 60.000 0.00 0.00 0.00 3.24
636 2615 0.178301 GGGGTGGACGAGAAAGGATC 59.822 60.000 0.00 0.00 0.00 3.36
637 2616 0.179108 GGGTGGACGAGAAAGGATCG 60.179 60.000 0.00 0.00 45.54 3.69
638 2617 0.806492 GGTGGACGAGAAAGGATCGC 60.806 60.000 0.00 0.00 43.91 4.58
639 2618 0.806492 GTGGACGAGAAAGGATCGCC 60.806 60.000 0.00 0.00 43.91 5.54
640 2619 1.589196 GGACGAGAAAGGATCGCCG 60.589 63.158 0.00 0.00 43.91 6.46
641 2620 1.589196 GACGAGAAAGGATCGCCGG 60.589 63.158 0.00 0.00 43.91 6.13
642 2621 2.001361 GACGAGAAAGGATCGCCGGA 62.001 60.000 5.05 0.00 43.91 5.14
643 2622 1.299468 CGAGAAAGGATCGCCGGAG 60.299 63.158 5.05 0.00 39.96 4.63
644 2623 1.592939 GAGAAAGGATCGCCGGAGC 60.593 63.158 5.05 0.00 39.96 4.70
655 2634 3.839432 CCGGAGCGGGGAGAGTTC 61.839 72.222 0.00 0.00 44.15 3.01
656 2635 2.756283 CGGAGCGGGGAGAGTTCT 60.756 66.667 0.00 0.00 0.00 3.01
657 2636 2.352032 CGGAGCGGGGAGAGTTCTT 61.352 63.158 0.00 0.00 0.00 2.52
658 2637 1.889530 CGGAGCGGGGAGAGTTCTTT 61.890 60.000 0.00 0.00 0.00 2.52
659 2638 0.325272 GGAGCGGGGAGAGTTCTTTT 59.675 55.000 0.00 0.00 0.00 2.27
660 2639 1.676314 GGAGCGGGGAGAGTTCTTTTC 60.676 57.143 0.00 0.00 0.00 2.29
661 2640 1.276705 GAGCGGGGAGAGTTCTTTTCT 59.723 52.381 0.00 0.00 0.00 2.52
662 2641 1.276705 AGCGGGGAGAGTTCTTTTCTC 59.723 52.381 0.00 0.00 40.25 2.87
663 2642 1.997669 CGGGGAGAGTTCTTTTCTCG 58.002 55.000 0.00 0.00 41.57 4.04
664 2643 1.404315 CGGGGAGAGTTCTTTTCTCGG 60.404 57.143 0.00 0.00 41.57 4.63
665 2644 1.066071 GGGGAGAGTTCTTTTCTCGGG 60.066 57.143 0.00 0.00 41.57 5.14
666 2645 1.066071 GGGAGAGTTCTTTTCTCGGGG 60.066 57.143 0.00 0.00 41.57 5.73
667 2646 1.900486 GGAGAGTTCTTTTCTCGGGGA 59.100 52.381 0.00 0.00 41.57 4.81
668 2647 2.093921 GGAGAGTTCTTTTCTCGGGGAG 60.094 54.545 0.00 0.00 41.57 4.30
669 2648 1.276705 AGAGTTCTTTTCTCGGGGAGC 59.723 52.381 0.00 0.00 37.07 4.70
670 2649 0.037232 AGTTCTTTTCTCGGGGAGCG 60.037 55.000 0.00 0.00 0.00 5.03
671 2650 1.375523 TTCTTTTCTCGGGGAGCGC 60.376 57.895 0.00 0.00 0.00 5.92
672 2651 2.798148 TTCTTTTCTCGGGGAGCGCC 62.798 60.000 2.29 0.00 0.00 6.53
673 2652 4.752879 TTTTCTCGGGGAGCGCCG 62.753 66.667 18.51 18.51 33.83 6.46
688 2667 3.213402 CCGGAGCGGGAGAGAGAC 61.213 72.222 0.00 0.00 44.15 3.36
689 2668 3.578272 CGGAGCGGGAGAGAGACG 61.578 72.222 0.00 0.00 0.00 4.18
690 2669 3.213402 GGAGCGGGAGAGAGACGG 61.213 72.222 0.00 0.00 0.00 4.79
691 2670 3.213402 GAGCGGGAGAGAGACGGG 61.213 72.222 0.00 0.00 0.00 5.28
692 2671 3.700831 GAGCGGGAGAGAGACGGGA 62.701 68.421 0.00 0.00 0.00 5.14
693 2672 2.519780 GCGGGAGAGAGACGGGAT 60.520 66.667 0.00 0.00 0.00 3.85
694 2673 2.557372 GCGGGAGAGAGACGGGATC 61.557 68.421 0.00 0.00 0.00 3.36
695 2674 2.255172 CGGGAGAGAGACGGGATCG 61.255 68.421 0.00 0.00 43.02 3.69
696 2675 1.899534 GGGAGAGAGACGGGATCGG 60.900 68.421 0.00 0.00 41.39 4.18
697 2676 1.899534 GGAGAGAGACGGGATCGGG 60.900 68.421 0.00 0.00 41.39 5.14
698 2677 1.148723 GAGAGAGACGGGATCGGGA 59.851 63.158 0.00 0.00 41.39 5.14
699 2678 0.887387 GAGAGAGACGGGATCGGGAG 60.887 65.000 0.00 0.00 41.39 4.30
700 2679 2.519780 AGAGACGGGATCGGGAGC 60.520 66.667 0.00 0.00 41.39 4.70
701 2680 3.967335 GAGACGGGATCGGGAGCG 61.967 72.222 0.00 0.00 41.39 5.03
718 2697 4.864334 GGTGGGGCGCAGGAGATG 62.864 72.222 10.83 0.00 0.00 2.90
719 2698 3.785859 GTGGGGCGCAGGAGATGA 61.786 66.667 10.83 0.00 0.00 2.92
720 2699 3.473647 TGGGGCGCAGGAGATGAG 61.474 66.667 10.83 0.00 0.00 2.90
721 2700 4.247380 GGGGCGCAGGAGATGAGG 62.247 72.222 10.83 0.00 0.00 3.86
722 2701 3.157252 GGGCGCAGGAGATGAGGA 61.157 66.667 10.83 0.00 0.00 3.71
723 2702 2.420890 GGCGCAGGAGATGAGGAG 59.579 66.667 10.83 0.00 0.00 3.69
724 2703 2.420890 GCGCAGGAGATGAGGAGG 59.579 66.667 0.30 0.00 0.00 4.30
725 2704 2.420890 CGCAGGAGATGAGGAGGC 59.579 66.667 0.00 0.00 0.00 4.70
726 2705 2.132996 CGCAGGAGATGAGGAGGCT 61.133 63.158 0.00 0.00 0.00 4.58
727 2706 1.446791 GCAGGAGATGAGGAGGCTG 59.553 63.158 0.00 0.00 0.00 4.85
728 2707 1.446791 CAGGAGATGAGGAGGCTGC 59.553 63.158 0.00 0.00 0.00 5.25
729 2708 2.132996 AGGAGATGAGGAGGCTGCG 61.133 63.158 0.00 0.00 0.00 5.18
730 2709 2.280052 GAGATGAGGAGGCTGCGC 60.280 66.667 0.00 0.00 0.00 6.09
731 2710 4.218578 AGATGAGGAGGCTGCGCG 62.219 66.667 0.00 0.00 0.00 6.86
749 2728 4.796495 GGCATGGGACGTGGGGTC 62.796 72.222 0.00 0.00 45.31 4.46
762 2741 4.309950 GGGTCGTGGCCTCGTGTT 62.310 66.667 25.10 0.00 0.00 3.32
763 2742 2.280592 GGTCGTGGCCTCGTGTTT 60.281 61.111 25.10 0.00 0.00 2.83
764 2743 1.890510 GGTCGTGGCCTCGTGTTTT 60.891 57.895 25.10 0.00 0.00 2.43
765 2744 1.441732 GGTCGTGGCCTCGTGTTTTT 61.442 55.000 25.10 0.00 0.00 1.94
797 2776 2.273538 TTTTTCGTTCGGGGATGGAA 57.726 45.000 0.00 0.00 0.00 3.53
798 2777 1.816074 TTTTCGTTCGGGGATGGAAG 58.184 50.000 0.00 0.00 0.00 3.46
799 2778 0.978151 TTTCGTTCGGGGATGGAAGA 59.022 50.000 0.00 0.00 0.00 2.87
800 2779 0.978151 TTCGTTCGGGGATGGAAGAA 59.022 50.000 0.00 0.00 0.00 2.52
801 2780 0.535335 TCGTTCGGGGATGGAAGAAG 59.465 55.000 0.00 0.00 0.00 2.85
802 2781 1.090052 CGTTCGGGGATGGAAGAAGC 61.090 60.000 0.00 0.00 0.00 3.86
803 2782 1.090052 GTTCGGGGATGGAAGAAGCG 61.090 60.000 0.00 0.00 0.00 4.68
804 2783 2.203070 CGGGGATGGAAGAAGCGG 60.203 66.667 0.00 0.00 0.00 5.52
805 2784 2.998949 GGGGATGGAAGAAGCGGT 59.001 61.111 0.00 0.00 0.00 5.68
806 2785 1.452108 GGGGATGGAAGAAGCGGTG 60.452 63.158 0.00 0.00 0.00 4.94
807 2786 1.452108 GGGATGGAAGAAGCGGTGG 60.452 63.158 0.00 0.00 0.00 4.61
808 2787 1.452108 GGATGGAAGAAGCGGTGGG 60.452 63.158 0.00 0.00 0.00 4.61
809 2788 1.602237 GATGGAAGAAGCGGTGGGA 59.398 57.895 0.00 0.00 0.00 4.37
810 2789 0.181350 GATGGAAGAAGCGGTGGGAT 59.819 55.000 0.00 0.00 0.00 3.85
811 2790 0.107017 ATGGAAGAAGCGGTGGGATG 60.107 55.000 0.00 0.00 0.00 3.51
812 2791 1.198094 TGGAAGAAGCGGTGGGATGA 61.198 55.000 0.00 0.00 0.00 2.92
813 2792 0.181350 GGAAGAAGCGGTGGGATGAT 59.819 55.000 0.00 0.00 0.00 2.45
814 2793 1.303309 GAAGAAGCGGTGGGATGATG 58.697 55.000 0.00 0.00 0.00 3.07
815 2794 0.620556 AAGAAGCGGTGGGATGATGT 59.379 50.000 0.00 0.00 0.00 3.06
816 2795 1.496060 AGAAGCGGTGGGATGATGTA 58.504 50.000 0.00 0.00 0.00 2.29
817 2796 2.050144 AGAAGCGGTGGGATGATGTAT 58.950 47.619 0.00 0.00 0.00 2.29
818 2797 2.037772 AGAAGCGGTGGGATGATGTATC 59.962 50.000 0.00 0.00 34.93 2.24
819 2798 1.423584 AGCGGTGGGATGATGTATCA 58.576 50.000 0.00 0.00 41.70 2.15
820 2799 1.768275 AGCGGTGGGATGATGTATCAA 59.232 47.619 0.00 0.00 40.69 2.57
821 2800 2.146342 GCGGTGGGATGATGTATCAAG 58.854 52.381 0.00 0.00 40.69 3.02
822 2801 2.224281 GCGGTGGGATGATGTATCAAGA 60.224 50.000 0.00 0.00 40.69 3.02
823 2802 3.657634 CGGTGGGATGATGTATCAAGAG 58.342 50.000 0.00 0.00 40.69 2.85
824 2803 3.406764 GGTGGGATGATGTATCAAGAGC 58.593 50.000 0.00 0.00 40.69 4.09
825 2804 3.406764 GTGGGATGATGTATCAAGAGCC 58.593 50.000 0.00 0.00 40.69 4.70
826 2805 2.037641 TGGGATGATGTATCAAGAGCCG 59.962 50.000 0.00 0.00 40.69 5.52
827 2806 2.072298 GGATGATGTATCAAGAGCCGC 58.928 52.381 0.00 0.00 40.69 6.53
828 2807 2.072298 GATGATGTATCAAGAGCCGCC 58.928 52.381 0.00 0.00 40.69 6.13
829 2808 0.829990 TGATGTATCAAGAGCCGCCA 59.170 50.000 0.00 0.00 33.08 5.69
830 2809 1.417517 TGATGTATCAAGAGCCGCCAT 59.582 47.619 0.00 0.00 33.08 4.40
831 2810 2.632512 TGATGTATCAAGAGCCGCCATA 59.367 45.455 0.00 0.00 33.08 2.74
832 2811 2.820059 TGTATCAAGAGCCGCCATAG 57.180 50.000 0.00 0.00 0.00 2.23
833 2812 1.344438 TGTATCAAGAGCCGCCATAGG 59.656 52.381 0.00 0.00 0.00 2.57
834 2813 1.344763 GTATCAAGAGCCGCCATAGGT 59.655 52.381 0.00 0.00 0.00 3.08
835 2814 0.107456 ATCAAGAGCCGCCATAGGTG 59.893 55.000 0.00 0.00 0.00 4.00
852 2831 2.907431 TGGTTGAACCATCACGACG 58.093 52.632 14.05 0.00 44.79 5.12
853 2832 0.105224 TGGTTGAACCATCACGACGT 59.895 50.000 14.05 0.00 44.79 4.34
854 2833 1.223187 GGTTGAACCATCACGACGTT 58.777 50.000 9.98 0.00 38.42 3.99
855 2834 1.193874 GGTTGAACCATCACGACGTTC 59.806 52.381 9.98 0.00 38.42 3.95
856 2835 1.133407 TTGAACCATCACGACGTTCG 58.867 50.000 0.00 0.00 46.93 3.95
857 2836 0.311477 TGAACCATCACGACGTTCGA 59.689 50.000 13.06 0.00 43.74 3.71
858 2837 1.068125 TGAACCATCACGACGTTCGAT 60.068 47.619 13.06 0.00 43.74 3.59
859 2838 1.582502 GAACCATCACGACGTTCGATC 59.417 52.381 13.06 0.00 43.74 3.69
860 2839 0.179145 ACCATCACGACGTTCGATCC 60.179 55.000 13.06 0.00 43.74 3.36
861 2840 0.100682 CCATCACGACGTTCGATCCT 59.899 55.000 13.06 0.00 43.74 3.24
862 2841 1.469251 CCATCACGACGTTCGATCCTT 60.469 52.381 13.06 0.00 43.74 3.36
863 2842 1.846782 CATCACGACGTTCGATCCTTC 59.153 52.381 13.06 0.00 43.74 3.46
864 2843 1.162698 TCACGACGTTCGATCCTTCT 58.837 50.000 13.06 0.00 43.74 2.85
865 2844 1.538512 TCACGACGTTCGATCCTTCTT 59.461 47.619 13.06 0.00 43.74 2.52
866 2845 2.030540 TCACGACGTTCGATCCTTCTTT 60.031 45.455 13.06 0.00 43.74 2.52
867 2846 3.189080 TCACGACGTTCGATCCTTCTTTA 59.811 43.478 13.06 0.00 43.74 1.85
868 2847 3.916172 CACGACGTTCGATCCTTCTTTAA 59.084 43.478 13.06 0.00 43.74 1.52
869 2848 4.561606 CACGACGTTCGATCCTTCTTTAAT 59.438 41.667 13.06 0.00 43.74 1.40
870 2849 5.740569 CACGACGTTCGATCCTTCTTTAATA 59.259 40.000 13.06 0.00 43.74 0.98
871 2850 6.252015 CACGACGTTCGATCCTTCTTTAATAA 59.748 38.462 13.06 0.00 43.74 1.40
872 2851 6.976925 ACGACGTTCGATCCTTCTTTAATAAT 59.023 34.615 13.06 0.00 43.74 1.28
873 2852 8.131100 ACGACGTTCGATCCTTCTTTAATAATA 58.869 33.333 13.06 0.00 43.74 0.98
874 2853 8.961092 CGACGTTCGATCCTTCTTTAATAATAA 58.039 33.333 0.00 0.00 43.74 1.40
899 2878 2.509131 TGGTATGAGGAATGCACCATGA 59.491 45.455 0.00 0.00 34.40 3.07
900 2879 3.138839 TGGTATGAGGAATGCACCATGAT 59.861 43.478 0.00 0.00 34.40 2.45
907 2890 2.372264 GAATGCACCATGATGTGACCT 58.628 47.619 6.31 0.00 38.55 3.85
913 2896 3.873801 GCACCATGATGTGACCTTAACCT 60.874 47.826 6.31 0.00 38.55 3.50
914 2897 4.335416 CACCATGATGTGACCTTAACCTT 58.665 43.478 0.00 0.00 38.55 3.50
915 2898 5.496556 CACCATGATGTGACCTTAACCTTA 58.503 41.667 0.00 0.00 38.55 2.69
916 2899 5.586243 CACCATGATGTGACCTTAACCTTAG 59.414 44.000 0.00 0.00 38.55 2.18
918 2901 5.817816 CCATGATGTGACCTTAACCTTAGAC 59.182 44.000 0.00 0.00 0.00 2.59
920 2903 5.091552 TGATGTGACCTTAACCTTAGACCT 58.908 41.667 0.00 0.00 0.00 3.85
922 2905 4.485875 TGTGACCTTAACCTTAGACCTCA 58.514 43.478 0.00 0.00 0.00 3.86
923 2906 4.282703 TGTGACCTTAACCTTAGACCTCAC 59.717 45.833 0.00 0.00 0.00 3.51
924 2907 3.836562 TGACCTTAACCTTAGACCTCACC 59.163 47.826 0.00 0.00 0.00 4.02
928 2916 6.269974 ACCTTAACCTTAGACCTCACCTATT 58.730 40.000 0.00 0.00 0.00 1.73
989 2980 4.141846 ACATCGAGGTATTCATTCAGTGCT 60.142 41.667 0.00 0.00 0.00 4.40
1024 3019 3.748568 GTCGCAAGGACAAGAAAGAAGAT 59.251 43.478 0.00 0.00 45.36 2.40
1025 3020 3.997021 TCGCAAGGACAAGAAAGAAGATC 59.003 43.478 0.00 0.00 38.47 2.75
1031 3026 5.621193 AGGACAAGAAAGAAGATCGGAAAA 58.379 37.500 0.00 0.00 0.00 2.29
1032 3027 5.703130 AGGACAAGAAAGAAGATCGGAAAAG 59.297 40.000 0.00 0.00 0.00 2.27
1197 3211 3.376078 GTCACCTACCCGCGGACA 61.376 66.667 30.73 13.08 0.00 4.02
1201 3215 2.439701 CCTACCCGCGGACAGAGA 60.440 66.667 30.73 3.42 0.00 3.10
1203 3217 1.601419 CCTACCCGCGGACAGAGAAA 61.601 60.000 30.73 2.39 0.00 2.52
1218 3232 3.973267 GAAAGAGCTCGTCGCGGCT 62.973 63.158 9.90 8.47 45.59 5.52
1524 3538 4.269523 AGCTCGCTGTGGGGCAAA 62.270 61.111 9.01 0.00 0.00 3.68
1696 3717 0.036875 GGTAACTCTGGCCTTGCAGT 59.963 55.000 3.32 0.00 0.00 4.40
1797 3818 0.525668 ACGAGTTCGGCGACATGATC 60.526 55.000 10.16 2.42 44.95 2.92
2316 4475 2.549563 CCGCTACATCAAGGCATCATCT 60.550 50.000 0.00 0.00 0.00 2.90
2488 4658 2.627945 AGAACCGCAATATCGCTTTCA 58.372 42.857 1.17 0.00 0.00 2.69
2518 4688 1.695242 TCTCGAAGTACCCAAAAGCCA 59.305 47.619 0.00 0.00 0.00 4.75
2529 4699 2.500229 CCAAAAGCCAACGAGTTCCTA 58.500 47.619 0.00 0.00 0.00 2.94
2783 9108 5.584251 GGTGAGAATCCAAGAGAGTGAATTC 59.416 44.000 0.00 0.00 0.00 2.17
2789 9114 4.067896 TCCAAGAGAGTGAATTCTGTTGC 58.932 43.478 7.05 0.00 43.41 4.17
2803 9128 2.490115 TCTGTTGCGGTGTTTGAGTTTT 59.510 40.909 0.00 0.00 0.00 2.43
2812 9137 3.069016 GGTGTTTGAGTTTTGTAAGGGGG 59.931 47.826 0.00 0.00 0.00 5.40
2831 9157 4.377897 GGGGTCATCGATTTTAAGACGAT 58.622 43.478 0.00 0.00 45.44 3.73
2837 9163 7.584123 GGTCATCGATTTTAAGACGATTCATTG 59.416 37.037 0.00 0.00 43.29 2.82
2839 9165 8.542953 TCATCGATTTTAAGACGATTCATTGAG 58.457 33.333 0.00 0.00 43.29 3.02
2840 9166 7.827819 TCGATTTTAAGACGATTCATTGAGT 57.172 32.000 0.00 0.00 0.00 3.41
2842 9168 6.836337 CGATTTTAAGACGATTCATTGAGTCG 59.164 38.462 24.53 24.53 45.02 4.18
2865 9204 8.174422 GTCGTTAGATAGAAGTCGAGTTAAACT 58.826 37.037 5.25 1.72 0.00 2.66
2901 9243 1.441732 GGTGGTGTCGTGTTGGGTTC 61.442 60.000 0.00 0.00 0.00 3.62
2912 9254 1.156736 GTTGGGTTCGGTCATGTGAG 58.843 55.000 0.00 0.00 0.00 3.51
2925 9267 2.439880 TCATGTGAGGTGTTGGGTGTTA 59.560 45.455 0.00 0.00 0.00 2.41
3022 9365 4.403432 TGTGAAGTTCTATAGGTAACCCCG 59.597 45.833 4.17 0.00 38.74 5.73
3054 9397 3.938963 GTGGTGAAGGCGAATAGATTGAA 59.061 43.478 0.00 0.00 0.00 2.69
3055 9398 4.576463 GTGGTGAAGGCGAATAGATTGAAT 59.424 41.667 0.00 0.00 0.00 2.57
3056 9399 5.758296 GTGGTGAAGGCGAATAGATTGAATA 59.242 40.000 0.00 0.00 0.00 1.75
3087 9430 2.683742 CGTCAATTGGTATTGGAGCCCT 60.684 50.000 5.42 0.00 41.23 5.19
3128 9471 9.988350 GTAATGGTATTATCATATCAAAAGCGG 57.012 33.333 0.00 0.00 29.37 5.52
3542 9885 0.468226 AGACAACCTTCGAGTGCCAA 59.532 50.000 0.00 0.00 0.00 4.52
3543 9886 1.134220 AGACAACCTTCGAGTGCCAAA 60.134 47.619 0.00 0.00 0.00 3.28
3588 9939 7.444629 CCAAGTGGTGATAGAATAATGATGG 57.555 40.000 0.00 0.00 0.00 3.51
3607 9958 7.140522 TGATGGATCATTTCACTATGAAGGA 57.859 36.000 0.00 0.00 37.70 3.36
3609 9960 7.718314 TGATGGATCATTTCACTATGAAGGAAG 59.282 37.037 0.00 0.00 37.70 3.46
3612 9963 6.017275 GGATCATTTCACTATGAAGGAAGCTG 60.017 42.308 0.00 0.00 37.70 4.24
3640 9991 7.592885 AAAGAAATGTGGGATATCATCAAGG 57.407 36.000 4.83 0.00 0.00 3.61
3659 10010 1.751351 GGTCCTCTGTGATCGTGATCA 59.249 52.381 8.43 8.43 44.83 2.92
3693 10661 3.075005 GCCGTGGTGAGGGAGCTA 61.075 66.667 0.00 0.00 0.00 3.32
3697 10665 1.990060 GTGGTGAGGGAGCTAGGCA 60.990 63.158 0.00 0.00 0.00 4.75
3700 10668 1.687493 GTGAGGGAGCTAGGCACCT 60.687 63.158 6.02 5.85 39.22 4.00
3702 10670 0.338467 TGAGGGAGCTAGGCACCTAA 59.662 55.000 6.02 0.00 39.22 2.69
3708 10676 1.223763 GCTAGGCACCTAACACCCC 59.776 63.158 0.00 0.00 0.00 4.95
3726 10694 2.281484 GACCTGGACGCTGCCAAA 60.281 61.111 0.00 0.00 37.52 3.28
3729 10697 1.003839 CCTGGACGCTGCCAAAGTA 60.004 57.895 0.00 0.00 37.52 2.24
3738 10706 2.102578 GCTGCCAAAGTATCCATTGGT 58.897 47.619 1.86 0.00 46.29 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 55 8.272173 CCAATCTATTTACTGGTAAGGGAAGAA 58.728 37.037 0.00 0.00 0.00 2.52
75 118 4.079253 GAGGTGTCCTAATTTCTTGCCAA 58.921 43.478 0.00 0.00 31.76 4.52
79 122 5.886960 CCTTGAGGTGTCCTAATTTCTTG 57.113 43.478 0.00 0.00 31.76 3.02
124 194 5.998454 ACGATGTTTGATTGATCTGATCC 57.002 39.130 14.71 0.75 0.00 3.36
125 195 7.008440 TCAACGATGTTTGATTGATCTGATC 57.992 36.000 10.72 10.72 30.29 2.92
126 196 6.457934 GCTCAACGATGTTTGATTGATCTGAT 60.458 38.462 0.00 0.00 34.96 2.90
127 197 5.163824 GCTCAACGATGTTTGATTGATCTGA 60.164 40.000 0.00 0.00 34.96 3.27
128 198 5.026462 GCTCAACGATGTTTGATTGATCTG 58.974 41.667 0.00 0.00 34.96 2.90
150 226 9.120538 TGATTAATCTAAGAGGTAATTGGTTGC 57.879 33.333 16.24 0.00 0.00 4.17
171 247 4.224370 GTCAGGTTCAGGTACCCTTGATTA 59.776 45.833 8.74 0.00 39.08 1.75
244 332 2.180204 CGGGTGCCGGATGATCAAC 61.180 63.158 5.05 0.00 44.15 3.18
245 333 2.189257 CGGGTGCCGGATGATCAA 59.811 61.111 5.05 0.00 44.15 2.57
328 2290 1.227853 GCGGGGTTCTCTGTGTGTT 60.228 57.895 0.00 0.00 0.00 3.32
329 2291 2.426023 GCGGGGTTCTCTGTGTGT 59.574 61.111 0.00 0.00 0.00 3.72
439 2410 3.637273 AGAGGACGTTGGGGGTGC 61.637 66.667 0.00 0.00 0.00 5.01
444 2415 1.004918 GGTGACAGAGGACGTTGGG 60.005 63.158 0.00 0.00 0.00 4.12
465 2444 2.293677 ACATAAGGAGAGCACCGATACG 59.706 50.000 0.00 0.00 34.73 3.06
469 2448 0.175760 GCACATAAGGAGAGCACCGA 59.824 55.000 0.00 0.00 34.73 4.69
472 2451 1.373570 GTGGCACATAAGGAGAGCAC 58.626 55.000 13.86 0.00 44.52 4.40
473 2452 0.253044 GGTGGCACATAAGGAGAGCA 59.747 55.000 20.82 0.00 44.52 4.26
475 2454 0.811616 GCGGTGGCACATAAGGAGAG 60.812 60.000 20.82 0.05 44.52 3.20
483 2462 4.666253 AGCTTGGCGGTGGCACAT 62.666 61.111 20.82 0.00 44.52 3.21
490 2469 3.470888 ATAGGCGAGCTTGGCGGT 61.471 61.111 20.97 11.37 39.82 5.68
510 2489 0.309302 CCACTCTAGATCGCGTCCAG 59.691 60.000 5.77 1.80 0.00 3.86
515 2494 0.593518 CTGCACCACTCTAGATCGCG 60.594 60.000 0.00 0.00 0.00 5.87
528 2507 1.691434 CTCCTCCCTCTTATCTGCACC 59.309 57.143 0.00 0.00 0.00 5.01
549 2528 5.887598 TCCAGTCCCATCAACAAATTATCTG 59.112 40.000 0.00 0.00 0.00 2.90
553 2532 5.200483 GGATCCAGTCCCATCAACAAATTA 58.800 41.667 6.95 0.00 41.50 1.40
554 2533 4.026052 GGATCCAGTCCCATCAACAAATT 58.974 43.478 6.95 0.00 41.50 1.82
556 2535 3.085952 GGATCCAGTCCCATCAACAAA 57.914 47.619 6.95 0.00 41.50 2.83
584 2563 4.228567 GGCTAGCTCCAGGCCGTC 62.229 72.222 15.72 0.00 43.05 4.79
588 2567 1.152440 TCTAGGGCTAGCTCCAGGC 60.152 63.158 12.08 1.43 40.27 4.85
589 2568 0.830023 GGTCTAGGGCTAGCTCCAGG 60.830 65.000 12.08 9.10 33.32 4.45
590 2569 1.175983 CGGTCTAGGGCTAGCTCCAG 61.176 65.000 12.08 7.49 33.32 3.86
591 2570 1.152735 CGGTCTAGGGCTAGCTCCA 60.153 63.158 12.08 0.00 33.32 3.86
592 2571 2.566570 GCGGTCTAGGGCTAGCTCC 61.567 68.421 12.08 12.53 33.32 4.70
593 2572 2.910345 CGCGGTCTAGGGCTAGCTC 61.910 68.421 15.72 11.51 33.32 4.09
594 2573 2.907917 CGCGGTCTAGGGCTAGCT 60.908 66.667 15.72 0.00 33.32 3.32
595 2574 2.905880 TCGCGGTCTAGGGCTAGC 60.906 66.667 6.04 6.04 33.32 3.42
596 2575 2.553727 GGTCGCGGTCTAGGGCTAG 61.554 68.421 6.13 0.00 34.56 3.42
597 2576 2.517875 GGTCGCGGTCTAGGGCTA 60.518 66.667 6.13 0.00 0.00 3.93
598 2577 4.753662 TGGTCGCGGTCTAGGGCT 62.754 66.667 6.13 0.00 0.00 5.19
599 2578 4.509737 GTGGTCGCGGTCTAGGGC 62.510 72.222 6.13 0.00 0.00 5.19
600 2579 4.189188 CGTGGTCGCGGTCTAGGG 62.189 72.222 6.13 0.00 0.00 3.53
601 2580 4.189188 CCGTGGTCGCGGTCTAGG 62.189 72.222 14.09 0.80 46.11 3.02
614 2593 1.374252 CTTTCTCGTCCACCCCGTG 60.374 63.158 0.00 0.00 0.00 4.94
615 2594 2.580601 CCTTTCTCGTCCACCCCGT 61.581 63.158 0.00 0.00 0.00 5.28
616 2595 1.614241 ATCCTTTCTCGTCCACCCCG 61.614 60.000 0.00 0.00 0.00 5.73
617 2596 0.178301 GATCCTTTCTCGTCCACCCC 59.822 60.000 0.00 0.00 0.00 4.95
618 2597 0.179108 CGATCCTTTCTCGTCCACCC 60.179 60.000 0.00 0.00 0.00 4.61
619 2598 0.806492 GCGATCCTTTCTCGTCCACC 60.806 60.000 0.00 0.00 38.37 4.61
620 2599 0.806492 GGCGATCCTTTCTCGTCCAC 60.806 60.000 0.00 0.00 38.37 4.02
621 2600 1.515954 GGCGATCCTTTCTCGTCCA 59.484 57.895 0.00 0.00 38.37 4.02
622 2601 1.589196 CGGCGATCCTTTCTCGTCC 60.589 63.158 0.00 0.00 37.44 4.79
623 2602 1.589196 CCGGCGATCCTTTCTCGTC 60.589 63.158 9.30 0.00 38.37 4.20
624 2603 2.005960 CTCCGGCGATCCTTTCTCGT 62.006 60.000 9.30 0.00 38.37 4.18
625 2604 1.299468 CTCCGGCGATCCTTTCTCG 60.299 63.158 9.30 0.00 39.11 4.04
626 2605 1.592939 GCTCCGGCGATCCTTTCTC 60.593 63.158 9.30 0.00 0.00 2.87
627 2606 2.501610 GCTCCGGCGATCCTTTCT 59.498 61.111 9.30 0.00 0.00 2.52
639 2618 1.889530 AAAGAACTCTCCCCGCTCCG 61.890 60.000 0.00 0.00 0.00 4.63
640 2619 0.325272 AAAAGAACTCTCCCCGCTCC 59.675 55.000 0.00 0.00 0.00 4.70
641 2620 1.276705 AGAAAAGAACTCTCCCCGCTC 59.723 52.381 0.00 0.00 0.00 5.03
642 2621 1.276705 GAGAAAAGAACTCTCCCCGCT 59.723 52.381 0.00 0.00 34.42 5.52
643 2622 1.728068 GAGAAAAGAACTCTCCCCGC 58.272 55.000 0.00 0.00 34.42 6.13
644 2623 1.404315 CCGAGAAAAGAACTCTCCCCG 60.404 57.143 0.00 0.00 36.72 5.73
645 2624 1.066071 CCCGAGAAAAGAACTCTCCCC 60.066 57.143 0.00 0.00 36.72 4.81
646 2625 1.066071 CCCCGAGAAAAGAACTCTCCC 60.066 57.143 0.00 0.00 36.72 4.30
647 2626 1.900486 TCCCCGAGAAAAGAACTCTCC 59.100 52.381 0.00 0.00 36.72 3.71
648 2627 2.675603 GCTCCCCGAGAAAAGAACTCTC 60.676 54.545 0.00 0.00 36.71 3.20
649 2628 1.276705 GCTCCCCGAGAAAAGAACTCT 59.723 52.381 0.00 0.00 32.87 3.24
650 2629 1.728068 GCTCCCCGAGAAAAGAACTC 58.272 55.000 0.00 0.00 0.00 3.01
651 2630 0.037232 CGCTCCCCGAGAAAAGAACT 60.037 55.000 0.00 0.00 40.02 3.01
652 2631 1.636570 GCGCTCCCCGAGAAAAGAAC 61.637 60.000 0.00 0.00 40.02 3.01
653 2632 1.375523 GCGCTCCCCGAGAAAAGAA 60.376 57.895 0.00 0.00 40.02 2.52
654 2633 2.264794 GCGCTCCCCGAGAAAAGA 59.735 61.111 0.00 0.00 40.02 2.52
655 2634 2.820037 GGCGCTCCCCGAGAAAAG 60.820 66.667 7.64 0.00 40.02 2.27
672 2651 3.578272 CGTCTCTCTCCCGCTCCG 61.578 72.222 0.00 0.00 0.00 4.63
673 2652 3.213402 CCGTCTCTCTCCCGCTCC 61.213 72.222 0.00 0.00 0.00 4.70
674 2653 2.969300 ATCCCGTCTCTCTCCCGCTC 62.969 65.000 0.00 0.00 0.00 5.03
675 2654 2.969300 GATCCCGTCTCTCTCCCGCT 62.969 65.000 0.00 0.00 0.00 5.52
676 2655 2.519780 ATCCCGTCTCTCTCCCGC 60.520 66.667 0.00 0.00 0.00 6.13
677 2656 2.255172 CGATCCCGTCTCTCTCCCG 61.255 68.421 0.00 0.00 0.00 5.14
678 2657 1.899534 CCGATCCCGTCTCTCTCCC 60.900 68.421 0.00 0.00 0.00 4.30
679 2658 1.899534 CCCGATCCCGTCTCTCTCC 60.900 68.421 0.00 0.00 0.00 3.71
680 2659 0.887387 CTCCCGATCCCGTCTCTCTC 60.887 65.000 0.00 0.00 0.00 3.20
681 2660 1.149627 CTCCCGATCCCGTCTCTCT 59.850 63.158 0.00 0.00 0.00 3.10
682 2661 2.557372 GCTCCCGATCCCGTCTCTC 61.557 68.421 0.00 0.00 0.00 3.20
683 2662 2.519780 GCTCCCGATCCCGTCTCT 60.520 66.667 0.00 0.00 0.00 3.10
684 2663 3.967335 CGCTCCCGATCCCGTCTC 61.967 72.222 0.00 0.00 36.29 3.36
701 2680 4.864334 CATCTCCTGCGCCCCACC 62.864 72.222 4.18 0.00 0.00 4.61
702 2681 3.746949 CTCATCTCCTGCGCCCCAC 62.747 68.421 4.18 0.00 0.00 4.61
703 2682 3.473647 CTCATCTCCTGCGCCCCA 61.474 66.667 4.18 0.00 0.00 4.96
704 2683 4.247380 CCTCATCTCCTGCGCCCC 62.247 72.222 4.18 0.00 0.00 5.80
705 2684 3.157252 TCCTCATCTCCTGCGCCC 61.157 66.667 4.18 0.00 0.00 6.13
706 2685 2.420890 CTCCTCATCTCCTGCGCC 59.579 66.667 4.18 0.00 0.00 6.53
707 2686 2.420890 CCTCCTCATCTCCTGCGC 59.579 66.667 0.00 0.00 0.00 6.09
708 2687 2.132996 AGCCTCCTCATCTCCTGCG 61.133 63.158 0.00 0.00 0.00 5.18
709 2688 1.446791 CAGCCTCCTCATCTCCTGC 59.553 63.158 0.00 0.00 0.00 4.85
710 2689 1.446791 GCAGCCTCCTCATCTCCTG 59.553 63.158 0.00 0.00 0.00 3.86
711 2690 2.132996 CGCAGCCTCCTCATCTCCT 61.133 63.158 0.00 0.00 0.00 3.69
712 2691 2.420890 CGCAGCCTCCTCATCTCC 59.579 66.667 0.00 0.00 0.00 3.71
732 2711 4.796495 GACCCCACGTCCCATGCC 62.796 72.222 0.00 0.00 35.23 4.40
734 2713 3.702048 ACGACCCCACGTCCCATG 61.702 66.667 0.00 0.00 43.02 3.66
735 2714 3.702048 CACGACCCCACGTCCCAT 61.702 66.667 0.00 0.00 44.76 4.00
745 2724 3.819877 AAACACGAGGCCACGACCC 62.820 63.158 29.67 0.00 37.03 4.46
746 2725 1.441732 AAAAACACGAGGCCACGACC 61.442 55.000 29.67 0.00 37.03 4.79
747 2726 2.019337 AAAAACACGAGGCCACGAC 58.981 52.632 29.67 4.36 37.03 4.34
748 2727 4.544001 AAAAACACGAGGCCACGA 57.456 50.000 29.67 0.00 37.03 4.35
778 2757 2.156098 CTTCCATCCCCGAACGAAAAA 58.844 47.619 0.00 0.00 0.00 1.94
779 2758 1.348366 TCTTCCATCCCCGAACGAAAA 59.652 47.619 0.00 0.00 0.00 2.29
780 2759 0.978151 TCTTCCATCCCCGAACGAAA 59.022 50.000 0.00 0.00 0.00 3.46
781 2760 0.978151 TTCTTCCATCCCCGAACGAA 59.022 50.000 0.00 0.00 0.00 3.85
782 2761 0.535335 CTTCTTCCATCCCCGAACGA 59.465 55.000 0.00 0.00 0.00 3.85
783 2762 1.090052 GCTTCTTCCATCCCCGAACG 61.090 60.000 0.00 0.00 0.00 3.95
784 2763 1.090052 CGCTTCTTCCATCCCCGAAC 61.090 60.000 0.00 0.00 0.00 3.95
785 2764 1.220749 CGCTTCTTCCATCCCCGAA 59.779 57.895 0.00 0.00 0.00 4.30
786 2765 2.731571 CCGCTTCTTCCATCCCCGA 61.732 63.158 0.00 0.00 0.00 5.14
787 2766 2.203070 CCGCTTCTTCCATCCCCG 60.203 66.667 0.00 0.00 0.00 5.73
788 2767 1.452108 CACCGCTTCTTCCATCCCC 60.452 63.158 0.00 0.00 0.00 4.81
789 2768 1.452108 CCACCGCTTCTTCCATCCC 60.452 63.158 0.00 0.00 0.00 3.85
790 2769 1.452108 CCCACCGCTTCTTCCATCC 60.452 63.158 0.00 0.00 0.00 3.51
791 2770 0.181350 ATCCCACCGCTTCTTCCATC 59.819 55.000 0.00 0.00 0.00 3.51
792 2771 0.107017 CATCCCACCGCTTCTTCCAT 60.107 55.000 0.00 0.00 0.00 3.41
793 2772 1.198094 TCATCCCACCGCTTCTTCCA 61.198 55.000 0.00 0.00 0.00 3.53
794 2773 0.181350 ATCATCCCACCGCTTCTTCC 59.819 55.000 0.00 0.00 0.00 3.46
795 2774 1.303309 CATCATCCCACCGCTTCTTC 58.697 55.000 0.00 0.00 0.00 2.87
796 2775 0.620556 ACATCATCCCACCGCTTCTT 59.379 50.000 0.00 0.00 0.00 2.52
797 2776 1.496060 TACATCATCCCACCGCTTCT 58.504 50.000 0.00 0.00 0.00 2.85
798 2777 2.224281 TGATACATCATCCCACCGCTTC 60.224 50.000 0.00 0.00 32.09 3.86
799 2778 1.768275 TGATACATCATCCCACCGCTT 59.232 47.619 0.00 0.00 32.09 4.68
800 2779 1.423584 TGATACATCATCCCACCGCT 58.576 50.000 0.00 0.00 32.09 5.52
801 2780 2.146342 CTTGATACATCATCCCACCGC 58.854 52.381 0.00 0.00 36.56 5.68
802 2781 3.657634 CTCTTGATACATCATCCCACCG 58.342 50.000 0.00 0.00 36.56 4.94
803 2782 3.406764 GCTCTTGATACATCATCCCACC 58.593 50.000 0.00 0.00 36.56 4.61
804 2783 3.406764 GGCTCTTGATACATCATCCCAC 58.593 50.000 0.00 0.00 36.56 4.61
805 2784 2.037641 CGGCTCTTGATACATCATCCCA 59.962 50.000 0.00 0.00 36.56 4.37
806 2785 2.693069 CGGCTCTTGATACATCATCCC 58.307 52.381 0.00 0.00 36.56 3.85
807 2786 2.072298 GCGGCTCTTGATACATCATCC 58.928 52.381 0.00 0.00 36.56 3.51
808 2787 2.072298 GGCGGCTCTTGATACATCATC 58.928 52.381 0.00 0.00 36.56 2.92
809 2788 1.417517 TGGCGGCTCTTGATACATCAT 59.582 47.619 11.43 0.00 36.56 2.45
810 2789 0.829990 TGGCGGCTCTTGATACATCA 59.170 50.000 11.43 0.00 34.44 3.07
811 2790 2.175878 ATGGCGGCTCTTGATACATC 57.824 50.000 11.43 0.00 0.00 3.06
812 2791 2.027745 CCTATGGCGGCTCTTGATACAT 60.028 50.000 11.43 0.00 0.00 2.29
813 2792 1.344438 CCTATGGCGGCTCTTGATACA 59.656 52.381 11.43 0.00 0.00 2.29
814 2793 1.344763 ACCTATGGCGGCTCTTGATAC 59.655 52.381 11.43 0.00 0.00 2.24
815 2794 1.344438 CACCTATGGCGGCTCTTGATA 59.656 52.381 11.43 0.00 0.00 2.15
816 2795 0.107456 CACCTATGGCGGCTCTTGAT 59.893 55.000 11.43 0.00 0.00 2.57
817 2796 1.522092 CACCTATGGCGGCTCTTGA 59.478 57.895 11.43 0.00 0.00 3.02
818 2797 1.524621 CCACCTATGGCGGCTCTTG 60.525 63.158 11.43 0.08 39.82 3.02
819 2798 2.911143 CCACCTATGGCGGCTCTT 59.089 61.111 11.43 0.00 39.82 2.85
835 2814 1.193874 GAACGTCGTGATGGTTCAACC 59.806 52.381 0.00 0.00 39.76 3.77
836 2815 1.136721 CGAACGTCGTGATGGTTCAAC 60.137 52.381 0.00 0.00 39.93 3.18
837 2816 1.133407 CGAACGTCGTGATGGTTCAA 58.867 50.000 0.00 0.00 39.93 2.69
838 2817 0.311477 TCGAACGTCGTGATGGTTCA 59.689 50.000 0.00 0.00 41.35 3.18
839 2818 1.582502 GATCGAACGTCGTGATGGTTC 59.417 52.381 0.00 6.67 41.35 3.62
840 2819 1.625616 GATCGAACGTCGTGATGGTT 58.374 50.000 0.00 0.00 41.35 3.67
841 2820 0.179145 GGATCGAACGTCGTGATGGT 60.179 55.000 0.00 0.00 41.35 3.55
842 2821 0.100682 AGGATCGAACGTCGTGATGG 59.899 55.000 0.00 0.00 41.35 3.51
843 2822 1.846782 GAAGGATCGAACGTCGTGATG 59.153 52.381 0.00 0.00 41.35 3.07
844 2823 1.743958 AGAAGGATCGAACGTCGTGAT 59.256 47.619 0.00 0.00 41.35 3.06
845 2824 1.162698 AGAAGGATCGAACGTCGTGA 58.837 50.000 0.00 0.00 41.35 4.35
846 2825 1.978542 AAGAAGGATCGAACGTCGTG 58.021 50.000 0.00 0.00 41.35 4.35
847 2826 2.719426 AAAGAAGGATCGAACGTCGT 57.281 45.000 0.00 0.00 41.35 4.34
848 2827 6.801367 TTATTAAAGAAGGATCGAACGTCG 57.199 37.500 0.00 0.00 42.10 5.12
867 2846 9.812347 TGCATTCCTCATACCATCTTTATTATT 57.188 29.630 0.00 0.00 0.00 1.40
868 2847 9.236006 GTGCATTCCTCATACCATCTTTATTAT 57.764 33.333 0.00 0.00 0.00 1.28
869 2848 7.665559 GGTGCATTCCTCATACCATCTTTATTA 59.334 37.037 0.00 0.00 0.00 0.98
870 2849 6.491403 GGTGCATTCCTCATACCATCTTTATT 59.509 38.462 0.00 0.00 0.00 1.40
871 2850 6.006449 GGTGCATTCCTCATACCATCTTTAT 58.994 40.000 0.00 0.00 0.00 1.40
872 2851 5.104151 TGGTGCATTCCTCATACCATCTTTA 60.104 40.000 0.00 0.00 36.56 1.85
873 2852 4.210331 GGTGCATTCCTCATACCATCTTT 58.790 43.478 0.00 0.00 0.00 2.52
874 2853 3.202818 TGGTGCATTCCTCATACCATCTT 59.797 43.478 0.00 0.00 36.56 2.40
875 2854 2.779430 TGGTGCATTCCTCATACCATCT 59.221 45.455 0.00 0.00 36.56 2.90
876 2855 3.213206 TGGTGCATTCCTCATACCATC 57.787 47.619 0.00 0.00 36.56 3.51
877 2856 3.889859 ATGGTGCATTCCTCATACCAT 57.110 42.857 0.00 0.00 44.48 3.55
878 2857 2.509131 TCATGGTGCATTCCTCATACCA 59.491 45.455 0.00 0.00 44.66 3.25
879 2858 3.213206 TCATGGTGCATTCCTCATACC 57.787 47.619 0.00 0.00 0.00 2.73
880 2859 4.023450 CACATCATGGTGCATTCCTCATAC 60.023 45.833 5.69 0.00 31.10 2.39
881 2860 4.139038 CACATCATGGTGCATTCCTCATA 58.861 43.478 5.69 0.00 31.10 2.15
882 2861 2.956333 CACATCATGGTGCATTCCTCAT 59.044 45.455 5.69 0.00 31.10 2.90
899 2878 5.046520 GTGAGGTCTAAGGTTAAGGTCACAT 60.047 44.000 0.00 0.00 33.54 3.21
900 2879 4.282703 GTGAGGTCTAAGGTTAAGGTCACA 59.717 45.833 0.00 0.00 33.54 3.58
907 2890 8.765517 CCTTAAATAGGTGAGGTCTAAGGTTAA 58.234 37.037 0.00 0.00 39.39 2.01
913 2896 7.287235 GCTACTCCTTAAATAGGTGAGGTCTAA 59.713 40.741 0.00 0.00 45.03 2.10
914 2897 6.776603 GCTACTCCTTAAATAGGTGAGGTCTA 59.223 42.308 0.00 0.00 45.03 2.59
915 2898 5.599242 GCTACTCCTTAAATAGGTGAGGTCT 59.401 44.000 0.00 0.00 45.03 3.85
916 2899 5.599242 AGCTACTCCTTAAATAGGTGAGGTC 59.401 44.000 0.00 0.00 45.03 3.85
918 2901 6.487299 AAGCTACTCCTTAAATAGGTGAGG 57.513 41.667 0.00 0.00 45.03 3.86
920 2903 6.839657 AGCTAAGCTACTCCTTAAATAGGTGA 59.160 38.462 0.00 0.00 40.39 4.02
943 2931 6.925165 TGTACTAGTTGTTTGTAACCAGTAGC 59.075 38.462 0.00 0.00 36.13 3.58
945 2933 7.809331 CGATGTACTAGTTGTTTGTAACCAGTA 59.191 37.037 0.00 0.00 34.94 2.74
947 2935 6.864685 TCGATGTACTAGTTGTTTGTAACCAG 59.135 38.462 0.00 0.00 0.00 4.00
951 2939 6.985117 ACCTCGATGTACTAGTTGTTTGTAA 58.015 36.000 0.00 0.00 0.00 2.41
1016 3011 4.557496 GCAGCAACTTTTCCGATCTTCTTT 60.557 41.667 0.00 0.00 0.00 2.52
1024 3019 2.258013 CCGGCAGCAACTTTTCCGA 61.258 57.895 0.00 0.00 42.43 4.55
1025 3020 2.070654 AACCGGCAGCAACTTTTCCG 62.071 55.000 0.00 0.00 39.79 4.30
1197 3211 1.135731 CGCGACGAGCTCTTTCTCT 59.864 57.895 12.85 0.00 45.59 3.10
1201 3215 4.057428 AGCCGCGACGAGCTCTTT 62.057 61.111 8.23 0.00 45.59 2.52
1238 3252 2.294074 CCACTTTCACCTTCCGTTTCA 58.706 47.619 0.00 0.00 0.00 2.69
1254 3268 2.113986 GAGTGCTTGGTGGCCACT 59.886 61.111 33.91 13.81 30.78 4.00
1311 3325 1.093972 CGGTGCTTATGATTGTGCCA 58.906 50.000 0.00 0.00 0.00 4.92
1371 3385 1.893786 GCTCTCCACCGTCATGAGT 59.106 57.895 0.00 0.00 0.00 3.41
1441 3455 1.004320 AGTACGGTGAATGCGGCAA 60.004 52.632 6.82 0.00 0.00 4.52
1463 3477 4.838152 CACCGATGGTCAGGCCGG 62.838 72.222 0.00 0.00 46.65 6.13
2149 4197 2.611971 CGTTGAAAGAACTCGGGATCCA 60.612 50.000 15.23 0.00 0.00 3.41
2151 4199 2.666994 GTCGTTGAAAGAACTCGGGATC 59.333 50.000 0.00 0.00 0.00 3.36
2488 4658 0.892755 TACTTCGAGATGGCACCGTT 59.107 50.000 0.00 0.00 0.00 4.44
2518 4688 3.581332 TCCTTCACCATTAGGAACTCGTT 59.419 43.478 0.00 0.00 41.75 3.85
2529 4699 3.387050 GGTCGTACCTATCCTTCACCATT 59.613 47.826 0.00 0.00 34.73 3.16
2783 9108 2.559998 AAACTCAAACACCGCAACAG 57.440 45.000 0.00 0.00 0.00 3.16
2789 9114 3.243267 CCCCTTACAAAACTCAAACACCG 60.243 47.826 0.00 0.00 0.00 4.94
2803 9128 5.190132 TCTTAAAATCGATGACCCCCTTACA 59.810 40.000 0.00 0.00 0.00 2.41
2812 9137 8.328146 TCAATGAATCGTCTTAAAATCGATGAC 58.672 33.333 0.00 0.25 42.22 3.06
2831 9157 7.065443 TCGACTTCTATCTAACGACTCAATGAA 59.935 37.037 0.00 0.00 0.00 2.57
2837 9163 5.971895 ACTCGACTTCTATCTAACGACTC 57.028 43.478 0.00 0.00 0.00 3.36
2839 9165 8.174422 AGTTTAACTCGACTTCTATCTAACGAC 58.826 37.037 0.00 0.00 0.00 4.34
2840 9166 8.261492 AGTTTAACTCGACTTCTATCTAACGA 57.739 34.615 0.00 0.00 0.00 3.85
2842 9168 9.437045 GCTAGTTTAACTCGACTTCTATCTAAC 57.563 37.037 0.00 0.00 0.00 2.34
2843 9169 8.333908 CGCTAGTTTAACTCGACTTCTATCTAA 58.666 37.037 0.00 0.00 0.00 2.10
2845 9171 6.538021 TCGCTAGTTTAACTCGACTTCTATCT 59.462 38.462 0.00 0.00 0.00 1.98
2846 9172 6.713520 TCGCTAGTTTAACTCGACTTCTATC 58.286 40.000 0.00 0.00 0.00 2.08
2847 9173 6.315891 ACTCGCTAGTTTAACTCGACTTCTAT 59.684 38.462 0.00 0.00 29.00 1.98
2848 9174 5.641209 ACTCGCTAGTTTAACTCGACTTCTA 59.359 40.000 0.00 0.00 29.00 2.10
2849 9175 4.455190 ACTCGCTAGTTTAACTCGACTTCT 59.545 41.667 0.00 0.00 29.00 2.85
2850 9176 4.721142 ACTCGCTAGTTTAACTCGACTTC 58.279 43.478 0.00 0.00 29.00 3.01
2851 9177 4.762956 ACTCGCTAGTTTAACTCGACTT 57.237 40.909 0.00 0.00 29.00 3.01
2901 9243 0.955428 CCCAACACCTCACATGACCG 60.955 60.000 0.00 0.00 0.00 4.79
2912 9254 2.632987 AGACACTAACACCCAACACC 57.367 50.000 0.00 0.00 0.00 4.16
3011 9354 4.402155 CACATACAGTAACGGGGTTACCTA 59.598 45.833 13.41 5.84 46.50 3.08
3014 9357 3.055891 ACCACATACAGTAACGGGGTTAC 60.056 47.826 9.96 9.96 45.91 2.50
3018 9361 1.551430 TCACCACATACAGTAACGGGG 59.449 52.381 0.86 0.86 0.00 5.73
3022 9365 2.671396 CGCCTTCACCACATACAGTAAC 59.329 50.000 0.00 0.00 0.00 2.50
3065 9408 2.639065 GGCTCCAATACCAATTGACGA 58.361 47.619 7.12 0.00 44.50 4.20
3067 9410 3.018423 AGGGCTCCAATACCAATTGAC 57.982 47.619 7.12 0.00 44.50 3.18
3118 9461 0.664761 CATCATCCGCCGCTTTTGAT 59.335 50.000 0.00 0.00 0.00 2.57
3512 9855 7.798982 CACTCGAAGGTTGTCTTATTTTTCTTC 59.201 37.037 0.00 0.00 35.50 2.87
3513 9856 7.639945 CACTCGAAGGTTGTCTTATTTTTCTT 58.360 34.615 0.00 0.00 35.50 2.52
3514 9857 6.293462 GCACTCGAAGGTTGTCTTATTTTTCT 60.293 38.462 0.00 0.00 35.50 2.52
3515 9858 5.851703 GCACTCGAAGGTTGTCTTATTTTTC 59.148 40.000 0.00 0.00 35.50 2.29
3516 9859 5.278315 GGCACTCGAAGGTTGTCTTATTTTT 60.278 40.000 0.00 0.00 35.50 1.94
3517 9860 4.215613 GGCACTCGAAGGTTGTCTTATTTT 59.784 41.667 0.00 0.00 35.50 1.82
3518 9861 3.751698 GGCACTCGAAGGTTGTCTTATTT 59.248 43.478 0.00 0.00 35.50 1.40
3519 9862 3.244422 TGGCACTCGAAGGTTGTCTTATT 60.244 43.478 0.00 0.00 35.50 1.40
3520 9863 2.301870 TGGCACTCGAAGGTTGTCTTAT 59.698 45.455 0.00 0.00 35.50 1.73
3521 9864 1.689813 TGGCACTCGAAGGTTGTCTTA 59.310 47.619 0.00 0.00 35.50 2.10
3543 9886 3.069016 GGTTTGACGGTCTCCCAATTTTT 59.931 43.478 9.88 0.00 0.00 1.94
3547 9890 0.768622 TGGTTTGACGGTCTCCCAAT 59.231 50.000 9.88 0.00 0.00 3.16
3566 9909 8.663167 TGATCCATCATTATTCTATCACCACTT 58.337 33.333 0.00 0.00 0.00 3.16
3583 9934 7.140522 TCCTTCATAGTGAAATGATCCATCA 57.859 36.000 0.00 0.00 35.73 3.07
3584 9935 7.308469 GCTTCCTTCATAGTGAAATGATCCATC 60.308 40.741 0.00 0.00 35.73 3.51
3588 9939 6.541641 ACAGCTTCCTTCATAGTGAAATGATC 59.458 38.462 0.00 0.00 35.73 2.92
3601 9952 5.360714 ACATTTCTTTTCACAGCTTCCTTCA 59.639 36.000 0.00 0.00 0.00 3.02
3602 9953 5.689068 CACATTTCTTTTCACAGCTTCCTTC 59.311 40.000 0.00 0.00 0.00 3.46
3607 9958 3.960102 TCCCACATTTCTTTTCACAGCTT 59.040 39.130 0.00 0.00 0.00 3.74
3609 9960 4.525912 ATCCCACATTTCTTTTCACAGC 57.474 40.909 0.00 0.00 0.00 4.40
3612 9963 7.999679 TGATGATATCCCACATTTCTTTTCAC 58.000 34.615 0.00 0.00 0.00 3.18
3659 10010 2.505982 CGAACCCCTGGCGATCAT 59.494 61.111 0.00 0.00 0.00 2.45
3679 10647 1.990060 TGCCTAGCTCCCTCACCAC 60.990 63.158 0.00 0.00 0.00 4.16
3693 10661 2.203877 TCGGGGTGTTAGGTGCCT 60.204 61.111 0.00 0.00 0.00 4.75
3697 10665 1.916777 CCAGGTCGGGGTGTTAGGT 60.917 63.158 0.00 0.00 0.00 3.08
3700 10668 2.277591 CGTCCAGGTCGGGGTGTTA 61.278 63.158 0.00 0.00 34.36 2.41
3708 10676 4.680237 TTGGCAGCGTCCAGGTCG 62.680 66.667 1.15 1.15 37.44 4.79
3726 10694 1.846439 CCCAGGACACCAATGGATACT 59.154 52.381 6.16 0.00 36.09 2.12
3729 10697 1.307647 GCCCAGGACACCAATGGAT 59.692 57.895 6.16 0.00 36.09 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.