Multiple sequence alignment - TraesCS7B01G321700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G321700 chr7B 100.000 4901 0 0 2938 7838 572420227 572415327 0 9051
1 TraesCS7B01G321700 chr7B 100.000 2620 0 0 1 2620 572423164 572420545 0 4839
2 TraesCS7B01G321700 chr7B 95.007 681 31 3 7160 7838 612985022 612984343 0 1066
3 TraesCS7B01G321700 chr7A 94.589 4084 146 31 2938 6977 612415520 612411468 0 6248
4 TraesCS7B01G321700 chr7A 93.356 2649 104 21 14 2620 612418162 612415544 0 3851
5 TraesCS7B01G321700 chr7D 92.938 3554 136 34 3699 7161 531862062 531858533 0 5066
6 TraesCS7B01G321700 chr7D 95.015 2628 81 23 13 2620 531865323 531862726 0 4082
7 TraesCS7B01G321700 chr7D 95.401 674 28 3 7165 7835 576947344 576948017 0 1070
8 TraesCS7B01G321700 chr7D 95.807 644 18 4 2938 3575 531862702 531862062 0 1031
9 TraesCS7B01G321700 chr4D 95.468 684 27 4 7154 7835 296664267 296664948 0 1088
10 TraesCS7B01G321700 chr1B 95.441 680 29 2 7160 7838 323682363 323681685 0 1083
11 TraesCS7B01G321700 chr5D 95.280 678 29 3 7160 7835 501455816 501455140 0 1072
12 TraesCS7B01G321700 chr5D 95.401 674 28 3 7165 7835 333368712 333369385 0 1070
13 TraesCS7B01G321700 chr6B 95.133 678 30 3 7160 7835 30957934 30958610 0 1066
14 TraesCS7B01G321700 chr5B 95.133 678 30 3 7160 7835 593225034 593225710 0 1066
15 TraesCS7B01G321700 chr4A 95.007 681 31 3 7160 7838 696047418 696046739 0 1066


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G321700 chr7B 572415327 572423164 7837 True 6945.0 9051 100.000000 1 7838 2 chr7B.!!$R2 7837
1 TraesCS7B01G321700 chr7B 612984343 612985022 679 True 1066.0 1066 95.007000 7160 7838 1 chr7B.!!$R1 678
2 TraesCS7B01G321700 chr7A 612411468 612418162 6694 True 5049.5 6248 93.972500 14 6977 2 chr7A.!!$R1 6963
3 TraesCS7B01G321700 chr7D 531858533 531865323 6790 True 3393.0 5066 94.586667 13 7161 3 chr7D.!!$R1 7148
4 TraesCS7B01G321700 chr7D 576947344 576948017 673 False 1070.0 1070 95.401000 7165 7835 1 chr7D.!!$F1 670
5 TraesCS7B01G321700 chr4D 296664267 296664948 681 False 1088.0 1088 95.468000 7154 7835 1 chr4D.!!$F1 681
6 TraesCS7B01G321700 chr1B 323681685 323682363 678 True 1083.0 1083 95.441000 7160 7838 1 chr1B.!!$R1 678
7 TraesCS7B01G321700 chr5D 501455140 501455816 676 True 1072.0 1072 95.280000 7160 7835 1 chr5D.!!$R1 675
8 TraesCS7B01G321700 chr5D 333368712 333369385 673 False 1070.0 1070 95.401000 7165 7835 1 chr5D.!!$F1 670
9 TraesCS7B01G321700 chr6B 30957934 30958610 676 False 1066.0 1066 95.133000 7160 7835 1 chr6B.!!$F1 675
10 TraesCS7B01G321700 chr5B 593225034 593225710 676 False 1066.0 1066 95.133000 7160 7835 1 chr5B.!!$F1 675
11 TraesCS7B01G321700 chr4A 696046739 696047418 679 True 1066.0 1066 95.007000 7160 7838 1 chr4A.!!$R1 678

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
970 999 1.030457 GCTCTGAAGGGCCATTGATG 58.970 55.000 7.73 0.0 0.00 3.07 F
1164 1193 0.451383 GCACATTTGCCGTCATGCTA 59.549 50.000 0.00 0.0 43.66 3.49 F
1560 1614 1.197721 CGGGAGATTTCACACTGTTGC 59.802 52.381 0.00 0.0 0.00 4.17 F
2355 2410 2.173356 TGGAAGGTAATGCTCCTGATGG 59.827 50.000 0.00 0.0 35.27 3.51 F
3314 3375 1.527034 TGATCTTGCTTGCTCACCAC 58.473 50.000 0.00 0.0 0.00 4.16 F
4177 4259 1.666209 AAGCTGGCGTGTTTGTTGCT 61.666 50.000 0.00 0.0 0.00 3.91 F
5605 5747 0.179045 CCCGAGGGCCTGATGTAAAG 60.179 60.000 12.95 0.0 0.00 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2544 2603 2.096174 CGACTTTCGGTCAAAACCAACA 59.904 45.455 0.00 0.00 46.86 3.33 R
2565 2624 3.989817 GCCATTTTTCACATGACCAGAAC 59.010 43.478 0.00 0.00 0.00 3.01 R
3306 3367 2.945668 ACTCAAAAAGTCAGTGGTGAGC 59.054 45.455 0.00 0.00 36.74 4.26 R
4177 4259 1.615116 CCTCCATTTCCTGCAGCTTGA 60.615 52.381 8.66 0.00 0.00 3.02 R
4432 4514 2.497675 GCAGAGATCAGTGGGACTACAA 59.502 50.000 0.00 0.00 0.00 2.41 R
5828 5971 0.179048 CGGCATGTGGGCATAAGAGA 60.179 55.000 0.00 0.00 43.60 3.10 R
7119 7293 0.318360 CACTGGCAACGTGTACTCGA 60.318 55.000 22.86 0.21 42.51 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 2.639286 GTGAAACGGGCACAGCAG 59.361 61.111 0.00 0.00 36.31 4.24
69 70 3.286751 TGAAACGGGCACAGCAGC 61.287 61.111 0.00 0.00 0.00 5.25
70 71 3.286751 GAAACGGGCACAGCAGCA 61.287 61.111 0.00 0.00 35.83 4.41
71 72 3.259425 GAAACGGGCACAGCAGCAG 62.259 63.158 0.00 0.00 35.83 4.24
194 198 2.111999 TAGCCCACGCTTTGCTCTGT 62.112 55.000 0.00 0.00 45.55 3.41
321 328 3.749870 AGCTCCCGCTCCTCCTCT 61.750 66.667 0.00 0.00 45.15 3.69
324 331 2.042843 TCCCGCTCCTCCTCTTCC 60.043 66.667 0.00 0.00 0.00 3.46
548 571 7.391275 GGTTTTAATAGGGTGTTAGCAGTACAA 59.609 37.037 0.00 0.00 0.00 2.41
563 586 2.071540 GTACAACTTAGAACCGGCCAC 58.928 52.381 0.00 0.00 0.00 5.01
567 590 2.936498 CAACTTAGAACCGGCCACTATG 59.064 50.000 0.00 7.81 0.00 2.23
851 880 5.590663 TCTCAGTGGAGCAGTATACTGTTAG 59.409 44.000 28.95 17.97 45.45 2.34
857 886 9.417561 AGTGGAGCAGTATACTGTTAGTATTTA 57.582 33.333 28.95 8.13 45.45 1.40
858 887 9.460906 GTGGAGCAGTATACTGTTAGTATTTAC 57.539 37.037 28.95 12.04 45.45 2.01
859 888 9.417561 TGGAGCAGTATACTGTTAGTATTTACT 57.582 33.333 28.95 15.84 45.45 2.24
970 999 1.030457 GCTCTGAAGGGCCATTGATG 58.970 55.000 7.73 0.00 0.00 3.07
1062 1091 2.161855 GGCATCACAGAACAATGGTGA 58.838 47.619 0.00 0.00 44.73 4.02
1164 1193 0.451383 GCACATTTGCCGTCATGCTA 59.549 50.000 0.00 0.00 43.66 3.49
1293 1347 1.977293 GAAGATGAAGGGGCTCGGCT 61.977 60.000 0.00 0.00 0.00 5.52
1400 1454 1.254026 TGAGCTACACAGGCGTAGTT 58.746 50.000 0.00 0.00 40.87 2.24
1560 1614 1.197721 CGGGAGATTTCACACTGTTGC 59.802 52.381 0.00 0.00 0.00 4.17
1568 1622 4.582701 TTTCACACTGTTGCAAATAGGG 57.417 40.909 0.00 6.70 44.89 3.53
1642 1696 5.425539 TGGAACTACCCTCTCTAATTGAAGG 59.574 44.000 0.00 0.00 38.00 3.46
1730 1784 4.439426 GCTGTCACATCGTACTCTCTTCAT 60.439 45.833 0.00 0.00 0.00 2.57
1855 1909 4.439305 TGTCATCTTTGCAGGTATTTGC 57.561 40.909 0.00 0.00 44.33 3.68
1898 1953 5.048083 TGGCACATATGTTTTCTTTCCAGTC 60.048 40.000 5.37 0.00 0.00 3.51
1904 1959 5.596836 ATGTTTTCTTTCCAGTCTTGCAA 57.403 34.783 0.00 0.00 0.00 4.08
1934 1989 5.009631 TGTGGCTAAATGCAGTAATGTTCT 58.990 37.500 0.00 0.00 45.15 3.01
2210 2265 4.322567 GGGAAATGTGAGATAGATCCAGC 58.677 47.826 0.00 0.00 0.00 4.85
2355 2410 2.173356 TGGAAGGTAATGCTCCTGATGG 59.827 50.000 0.00 0.00 35.27 3.51
2544 2603 7.798596 TTTAATCAATGTGGTTGTTTGCAAT 57.201 28.000 0.00 0.00 38.95 3.56
2589 2648 3.833650 TCTGGTCATGTGAAAAATGGCAT 59.166 39.130 0.00 0.00 38.12 4.40
2601 2660 5.364446 TGAAAAATGGCATGGCTTATCTGAT 59.636 36.000 21.08 0.14 0.00 2.90
3033 3092 4.566987 CTCCACGAGCTAGGTAAGTTTTT 58.433 43.478 0.00 0.00 0.00 1.94
3126 3185 5.712152 AGATAGGGTTTTGCTTTGTTCTG 57.288 39.130 0.00 0.00 0.00 3.02
3180 3239 3.577805 AGTACAGTGCCTGTTTCCTTT 57.422 42.857 12.22 0.00 42.59 3.11
3181 3240 4.699925 AGTACAGTGCCTGTTTCCTTTA 57.300 40.909 12.22 0.00 42.59 1.85
3182 3241 4.386711 AGTACAGTGCCTGTTTCCTTTAC 58.613 43.478 12.22 4.28 42.59 2.01
3183 3242 3.290948 ACAGTGCCTGTTTCCTTTACA 57.709 42.857 2.38 0.00 42.59 2.41
3236 3297 4.397417 GGCAGAAGAACATAAGCACTCATT 59.603 41.667 0.00 0.00 0.00 2.57
3263 3324 8.050325 ACTCATCAGTAGTCAGTACTCAGTATT 58.950 37.037 0.00 0.00 40.27 1.89
3306 3367 4.158025 AGAGAGCCATTTTGATCTTGCTTG 59.842 41.667 0.00 0.00 0.00 4.01
3314 3375 1.527034 TGATCTTGCTTGCTCACCAC 58.473 50.000 0.00 0.00 0.00 4.16
3545 3612 6.774673 TGGGACAACTTTATGACTGTTATGA 58.225 36.000 0.00 0.00 31.92 2.15
3622 3689 6.183360 ACAACATTGTTCATTTGCTTGAGAGA 60.183 34.615 0.00 0.00 38.47 3.10
3641 3708 7.820648 TGAGAGATTGACTGAAAAATAAAGGC 58.179 34.615 0.00 0.00 0.00 4.35
3822 3904 3.242739 GGTTTGCATTCACTAGTATGGCG 60.243 47.826 7.57 0.00 0.00 5.69
3825 3907 4.394439 TGCATTCACTAGTATGGCGTTA 57.606 40.909 7.57 0.00 0.00 3.18
3963 4045 6.493449 TGTGCGATGAATGAAAAGAATACA 57.507 33.333 0.00 0.00 0.00 2.29
4177 4259 1.666209 AAGCTGGCGTGTTTGTTGCT 61.666 50.000 0.00 0.00 0.00 3.91
4219 4301 4.383661 GGACCATTTCCAAAAACACTGGTT 60.384 41.667 0.00 0.00 45.10 3.67
4552 4634 4.205587 GACTCTACCTCGAGTTCCCATTA 58.794 47.826 12.31 0.00 43.91 1.90
4632 4714 6.751157 TCATCTGATTGTGAAAATGCTTTGT 58.249 32.000 0.00 0.00 0.00 2.83
4634 4716 7.383029 TCATCTGATTGTGAAAATGCTTTGTTC 59.617 33.333 0.00 0.00 0.00 3.18
4780 4862 8.154203 TCTGACAATTAACATTTCTACCTGTGA 58.846 33.333 0.00 0.00 0.00 3.58
4815 4897 4.599047 ATCTTATCTGACTACAGCTGCC 57.401 45.455 15.27 1.09 43.17 4.85
5216 5298 4.457834 AAGTAGATGTGACCTGTACTGC 57.542 45.455 0.00 0.00 0.00 4.40
5327 5424 5.009610 TCAAGGAACCAACTTGCAAATACTC 59.990 40.000 0.00 0.00 43.77 2.59
5349 5465 1.400846 CAGAGCAGTGATGTGGATTGC 59.599 52.381 0.00 0.00 35.09 3.56
5444 5586 2.975266 TGACATCAATTTTGGCCATGC 58.025 42.857 6.09 0.00 0.00 4.06
5605 5747 0.179045 CCCGAGGGCCTGATGTAAAG 60.179 60.000 12.95 0.00 0.00 1.85
5617 5759 6.127338 GGCCTGATGTAAAGGATTTTAGCTTT 60.127 38.462 0.00 0.00 40.09 3.51
5650 5792 9.331282 GCTGATGTTCTTAAACCTGATATACTT 57.669 33.333 0.00 0.00 34.28 2.24
5723 5865 3.497262 AGCAAACTACGCTGGTAAGTTTC 59.503 43.478 0.00 0.00 38.60 2.78
5741 5884 2.568623 TCCAGAGTTTTTCCCTCAGC 57.431 50.000 0.00 0.00 0.00 4.26
5742 5885 1.160137 CCAGAGTTTTTCCCTCAGCG 58.840 55.000 0.00 0.00 0.00 5.18
5745 5888 3.369471 CCAGAGTTTTTCCCTCAGCGATA 60.369 47.826 0.00 0.00 0.00 2.92
5746 5889 4.253685 CAGAGTTTTTCCCTCAGCGATAA 58.746 43.478 0.00 0.00 0.00 1.75
5753 5896 1.831106 TCCCTCAGCGATAACACACAT 59.169 47.619 0.00 0.00 0.00 3.21
5765 5908 2.497107 ACACACATGCTTGTTTCAGC 57.503 45.000 1.83 0.00 40.55 4.26
5821 5964 7.448748 TCTAGTTTCAAAAGGAAATGCTACC 57.551 36.000 0.00 0.00 46.55 3.18
5828 5971 7.301868 TCAAAAGGAAATGCTACCTTGATTT 57.698 32.000 0.00 0.00 44.44 2.17
5846 5989 2.057137 TTCTCTTATGCCCACATGCC 57.943 50.000 0.00 0.00 37.04 4.40
5855 5998 1.434696 CCCACATGCCGAATGCTTC 59.565 57.895 0.00 0.00 40.22 3.86
5861 6004 0.035152 ATGCCGAATGCTTCAGGACA 60.035 50.000 0.00 7.74 42.00 4.02
5862 6005 0.674581 TGCCGAATGCTTCAGGACAG 60.675 55.000 0.00 0.00 42.00 3.51
5873 6016 4.187694 GCTTCAGGACAGGATCTAGTTTG 58.812 47.826 0.00 0.00 0.00 2.93
5880 6023 8.206867 TCAGGACAGGATCTAGTTTGAATAATG 58.793 37.037 0.00 0.00 0.00 1.90
5886 6029 9.388506 CAGGATCTAGTTTGAATAATGTTGTCT 57.611 33.333 0.00 0.00 0.00 3.41
5892 6035 9.817365 CTAGTTTGAATAATGTTGTCTCTTGTG 57.183 33.333 0.00 0.00 0.00 3.33
5897 6040 5.824904 ATAATGTTGTCTCTTGTGATGGC 57.175 39.130 0.00 0.00 0.00 4.40
5905 6048 3.873952 GTCTCTTGTGATGGCAGTAATCC 59.126 47.826 0.00 0.00 0.00 3.01
5912 6055 6.000246 TGTGATGGCAGTAATCCATAAAGA 58.000 37.500 0.00 0.00 43.90 2.52
5919 6062 6.547141 TGGCAGTAATCCATAAAGATGAAAGG 59.453 38.462 0.00 0.00 34.73 3.11
5922 6065 7.255730 GCAGTAATCCATAAAGATGAAAGGCAT 60.256 37.037 0.00 0.00 40.77 4.40
5936 6079 3.726557 AAGGCATCCATTCTGTCTGAA 57.273 42.857 0.00 0.00 39.24 3.02
5953 6111 6.542821 TGTCTGAATAACCCAAATTCTCTGT 58.457 36.000 0.00 0.00 34.95 3.41
5954 6112 6.655003 TGTCTGAATAACCCAAATTCTCTGTC 59.345 38.462 0.00 0.00 34.95 3.51
5955 6113 6.655003 GTCTGAATAACCCAAATTCTCTGTCA 59.345 38.462 0.00 0.00 34.95 3.58
5956 6114 7.337942 GTCTGAATAACCCAAATTCTCTGTCAT 59.662 37.037 0.00 0.00 34.95 3.06
5957 6115 7.337689 TCTGAATAACCCAAATTCTCTGTCATG 59.662 37.037 0.00 0.00 34.95 3.07
5959 6117 2.450476 ACCCAAATTCTCTGTCATGCC 58.550 47.619 0.00 0.00 0.00 4.40
5962 6120 3.449737 CCCAAATTCTCTGTCATGCCAAT 59.550 43.478 0.00 0.00 0.00 3.16
5963 6121 4.081309 CCCAAATTCTCTGTCATGCCAATT 60.081 41.667 0.00 0.00 0.00 2.32
5964 6122 4.868171 CCAAATTCTCTGTCATGCCAATTG 59.132 41.667 0.00 0.00 0.00 2.32
5965 6123 4.730949 AATTCTCTGTCATGCCAATTGG 57.269 40.909 20.81 20.81 38.53 3.16
5966 6124 2.885135 TCTCTGTCATGCCAATTGGT 57.115 45.000 25.19 3.87 37.57 3.67
5967 6125 3.159213 TCTCTGTCATGCCAATTGGTT 57.841 42.857 25.19 11.01 37.57 3.67
5968 6126 3.499338 TCTCTGTCATGCCAATTGGTTT 58.501 40.909 25.19 10.65 37.57 3.27
6058 6216 7.129109 TGCAGCACTAATAAAACAGAAGTAC 57.871 36.000 0.00 0.00 0.00 2.73
6160 6318 1.742900 CGCAGCAATACTCCACGTCG 61.743 60.000 0.00 0.00 0.00 5.12
6190 6348 4.954970 CTTGCACGGGCCACACCT 62.955 66.667 7.46 0.00 40.13 4.00
6222 6380 2.670251 TGGCGCGGTTAACCCAAG 60.670 61.111 19.09 11.12 0.00 3.61
6241 6399 3.092511 GCTGCCCTGGATCCTGGA 61.093 66.667 33.31 17.07 37.23 3.86
6267 6425 8.585881 ACTAGTTCTAGATGCAAGTAAGTTGAA 58.414 33.333 12.97 0.00 38.60 2.69
6308 6467 3.415212 TGTGAATTTCTCTTCTGCCCTG 58.585 45.455 0.00 0.00 0.00 4.45
6313 6472 0.322975 TTCTCTTCTGCCCTGCTGTC 59.677 55.000 0.00 0.00 0.00 3.51
6468 6627 0.320374 TGTGTTCCATCCCTGACGTC 59.680 55.000 9.11 9.11 0.00 4.34
6515 6674 4.426112 CTCACGCTGCGGCTCTGA 62.426 66.667 26.95 18.50 36.09 3.27
6517 6676 4.731612 CACGCTGCGGCTCTGACT 62.732 66.667 26.95 0.00 36.09 3.41
6564 6723 1.364171 CATCCCCTCGATCACGGTC 59.636 63.158 0.00 0.00 40.21 4.79
6567 6726 1.454111 CCCCTCGATCACGGTCTCT 60.454 63.158 0.00 0.00 40.21 3.10
6672 6831 4.933064 CCGGAGATCGCGCTGGAC 62.933 72.222 5.56 0.00 42.41 4.02
6813 6972 0.399233 GCCACCTAGTCAGGATCCCT 60.399 60.000 8.55 0.59 45.91 4.20
6838 6997 4.017958 TGGTTGCTATGGGGTTCAAATAGA 60.018 41.667 0.00 0.00 0.00 1.98
6840 6999 5.193679 GTTGCTATGGGGTTCAAATAGAGT 58.806 41.667 0.00 0.00 0.00 3.24
6849 7008 6.011981 TGGGGTTCAAATAGAGTTATGGTTCT 60.012 38.462 0.00 0.00 0.00 3.01
6854 7013 9.606631 GTTCAAATAGAGTTATGGTTCTCTGAT 57.393 33.333 5.15 0.00 40.61 2.90
6855 7014 9.605275 TTCAAATAGAGTTATGGTTCTCTGATG 57.395 33.333 5.15 2.57 40.61 3.07
6856 7015 7.712639 TCAAATAGAGTTATGGTTCTCTGATGC 59.287 37.037 5.15 0.00 40.61 3.91
6857 7016 6.737720 ATAGAGTTATGGTTCTCTGATGCA 57.262 37.500 0.00 0.00 40.61 3.96
6858 7017 5.426689 AGAGTTATGGTTCTCTGATGCAA 57.573 39.130 0.00 0.00 39.23 4.08
6859 7018 5.181748 AGAGTTATGGTTCTCTGATGCAAC 58.818 41.667 0.00 0.00 39.23 4.17
6901 7065 9.169592 TGTAATATTTTGTAGCTTGGTAGGAAC 57.830 33.333 0.00 0.00 0.00 3.62
6934 7098 6.922980 CGACGTAATTCGGTAATGATGTAT 57.077 37.500 0.00 0.00 44.69 2.29
6936 7100 7.217880 CGACGTAATTCGGTAATGATGTATTG 58.782 38.462 0.00 0.00 44.69 1.90
6938 7102 8.068893 ACGTAATTCGGTAATGATGTATTGTC 57.931 34.615 0.00 0.00 44.69 3.18
6955 7127 2.710377 TGTCTGTGTTATGATGGTGCC 58.290 47.619 0.00 0.00 0.00 5.01
6962 7134 0.258484 TTATGATGGTGCCCCAGGTG 59.742 55.000 0.00 0.00 46.15 4.00
6963 7135 0.918799 TATGATGGTGCCCCAGGTGT 60.919 55.000 0.00 0.00 46.15 4.16
6974 7146 4.221924 GTGCCCCAGGTGTTGTAAAAATAT 59.778 41.667 0.00 0.00 0.00 1.28
7023 7197 5.162936 TGACATGGTAGAGATCTCCAGGTAT 60.163 44.000 19.30 5.33 44.39 2.73
7029 7203 4.059773 AGAGATCTCCAGGTATCCATCC 57.940 50.000 19.30 0.00 0.00 3.51
7037 7211 3.138283 TCCAGGTATCCATCCAATCCAAC 59.862 47.826 0.00 0.00 0.00 3.77
7049 7223 2.029649 CCAATCCAACCTTCTGCAGTTG 60.030 50.000 14.67 11.40 42.41 3.16
7051 7225 3.788227 ATCCAACCTTCTGCAGTTGTA 57.212 42.857 14.67 0.00 41.42 2.41
7068 7242 6.252869 GCAGTTGTAATGCATTTCAATCTCAG 59.747 38.462 27.37 18.11 43.31 3.35
7084 7258 3.372897 TCTCAGTCTGGCATCTCTTCAT 58.627 45.455 0.00 0.00 0.00 2.57
7113 7287 9.832445 TTGCTTGAGGTATTATTCTAGGTTAAG 57.168 33.333 0.00 0.00 0.00 1.85
7114 7288 9.209048 TGCTTGAGGTATTATTCTAGGTTAAGA 57.791 33.333 0.00 0.00 0.00 2.10
7128 7302 4.979388 AGGTTAAGAACGATCGAGTACAC 58.021 43.478 24.34 10.43 0.00 2.90
7145 7319 1.302431 ACGTTGCCAGTGCTGCATA 60.302 52.632 5.27 0.00 38.76 3.14
7149 7323 1.002033 GTTGCCAGTGCTGCATATAGC 60.002 52.381 5.27 7.75 43.95 2.97
7161 7335 3.637998 GCATATAGCATTGCAGCTGTT 57.362 42.857 16.64 2.19 46.11 3.16
7162 7336 3.305964 GCATATAGCATTGCAGCTGTTG 58.694 45.455 16.64 11.84 46.11 3.33
7163 7337 3.004002 GCATATAGCATTGCAGCTGTTGA 59.996 43.478 16.64 1.70 46.11 3.18
7164 7338 4.784329 CATATAGCATTGCAGCTGTTGAG 58.216 43.478 16.64 4.83 46.11 3.02
7172 7347 2.300433 TGCAGCTGTTGAGAAACACAT 58.700 42.857 16.64 0.00 0.00 3.21
7197 7372 1.202952 AGGGTTTTGCGTGGATGGTTA 60.203 47.619 0.00 0.00 0.00 2.85
7468 7646 6.429078 TCTCACAAAGTGGAAATCAATCTCAG 59.571 38.462 0.00 0.00 33.87 3.35
7495 7673 2.086054 AGTCCGAGCATGAAACACTC 57.914 50.000 0.00 0.00 0.00 3.51
7528 7706 4.019950 TCAGGTAAGTTGCCCCTAAGTTAC 60.020 45.833 6.35 0.00 42.01 2.50
7574 7752 0.951040 CGTGGGACTCCAAGTTCTGC 60.951 60.000 0.00 0.00 46.04 4.26
7655 7833 1.336440 CTCGGTGCTTGATCTCGAGAT 59.664 52.381 27.63 27.63 46.89 2.75
7723 7901 5.772672 ACAAATATAGCAAAACCACCAGTGA 59.227 36.000 0.00 0.00 0.00 3.41
7749 7927 2.421107 CCTATCATCAACACAGCCTGCT 60.421 50.000 0.00 0.00 0.00 4.24
7756 7934 1.001293 CAACACAGCCTGCTCAGTCTA 59.999 52.381 0.00 0.00 0.00 2.59
7835 8013 5.221130 GTCTAGCGTACCTTTGACATATCC 58.779 45.833 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 4.568152 TTTTTCCTCCTCTTTCGCTTTG 57.432 40.909 0.00 0.00 0.00 2.77
138 142 6.539649 TGTCTTTGTCTTTTAATGGAGTCG 57.460 37.500 0.00 0.00 0.00 4.18
194 198 2.039624 GGGGAGCAGTGGAGGAGA 59.960 66.667 0.00 0.00 0.00 3.71
311 318 2.131067 CGGGAGGAAGAGGAGGAGC 61.131 68.421 0.00 0.00 0.00 4.70
313 320 2.042843 GCGGGAGGAAGAGGAGGA 60.043 66.667 0.00 0.00 0.00 3.71
419 432 2.229784 GACAAGCAAATCACCTGGGAAG 59.770 50.000 0.00 0.00 0.00 3.46
420 433 2.158475 AGACAAGCAAATCACCTGGGAA 60.158 45.455 0.00 0.00 0.00 3.97
548 571 2.167900 GTCATAGTGGCCGGTTCTAAGT 59.832 50.000 1.90 0.00 0.00 2.24
567 590 5.292101 GCGGCCATCTTATTATGATACAGTC 59.708 44.000 2.24 0.00 0.00 3.51
857 886 4.811557 GCACTCAGTCAGTTGAAACTTAGT 59.188 41.667 0.00 0.00 37.08 2.24
858 887 4.212214 GGCACTCAGTCAGTTGAAACTTAG 59.788 45.833 0.00 0.00 37.08 2.18
859 888 4.127171 GGCACTCAGTCAGTTGAAACTTA 58.873 43.478 0.00 0.00 37.08 2.24
931 960 4.318021 GCGGCTACATGGCATGCG 62.318 66.667 26.70 21.38 41.89 4.73
970 999 0.679960 AAATTAGGCTGCCCGGTGAC 60.680 55.000 16.57 0.00 35.76 3.67
1062 1091 1.307647 GAATGGTCCCCATGGTGCT 59.692 57.895 11.73 0.00 44.40 4.40
1164 1193 1.616994 GCTCTTGGGCATTAGTTGGGT 60.617 52.381 0.00 0.00 0.00 4.51
1263 1317 4.283467 CCCCTTCATCTTCACCGATGTATA 59.717 45.833 0.00 0.00 41.17 1.47
1334 1388 0.459411 TGTACACATCATGCGTCCCG 60.459 55.000 0.00 0.00 0.00 5.14
1396 1450 3.596214 GTCGCTGGAAATCCTTCAACTA 58.404 45.455 0.44 0.00 36.82 2.24
1400 1454 0.391130 CGGTCGCTGGAAATCCTTCA 60.391 55.000 0.44 0.00 36.82 3.02
1476 1530 5.304101 ACAAATGTTAAGAGACATGGCCAAA 59.696 36.000 10.96 0.00 40.03 3.28
1540 1594 1.197721 GCAACAGTGTGAAATCTCCCG 59.802 52.381 0.00 0.00 0.00 5.14
1560 1614 8.984764 CAATTCATCAATAACATGCCCTATTTG 58.015 33.333 0.00 0.00 0.00 2.32
1568 1622 9.217223 GAAAATTGCAATTCATCAATAACATGC 57.783 29.630 24.28 0.00 33.05 4.06
1597 1651 8.617809 GTTCCAATTGTAACTGAAGTACTGAAA 58.382 33.333 6.64 0.00 0.00 2.69
1616 1670 7.366011 CCTTCAATTAGAGAGGGTAGTTCCAAT 60.366 40.741 0.00 0.00 38.11 3.16
1718 1772 3.243267 GCCTTCGGAGATGAAGAGAGTAC 60.243 52.174 5.12 0.00 46.64 2.73
1730 1784 0.614697 TCTCATGGTGCCTTCGGAGA 60.615 55.000 0.00 0.00 0.00 3.71
1855 1909 5.754890 GTGCCAGCCAGAAAATTTATTATGG 59.245 40.000 0.04 0.04 43.09 2.74
1872 1926 4.176271 GGAAAGAAAACATATGTGCCAGC 58.824 43.478 9.63 0.00 0.00 4.85
1898 1953 7.438757 TGCATTTAGCCACAATAATATTGCAAG 59.561 33.333 12.50 3.55 44.83 4.01
1911 1966 5.009631 AGAACATTACTGCATTTAGCCACA 58.990 37.500 0.00 0.00 44.83 4.17
1934 1989 7.038587 TCCTTAAGAAATCAGCCTAACACAGTA 60.039 37.037 3.36 0.00 0.00 2.74
2210 2265 3.425577 TGCAGAAGCTTCTTTGTGTTG 57.574 42.857 26.44 14.88 42.74 3.33
2286 2341 5.184864 TGCAAACTCAACATCGGGATTAAAT 59.815 36.000 0.00 0.00 0.00 1.40
2423 2482 7.552687 CACAGGTTTGGAAGTTATAAGCAGATA 59.447 37.037 0.00 0.00 0.00 1.98
2544 2603 2.096174 CGACTTTCGGTCAAAACCAACA 59.904 45.455 0.00 0.00 46.86 3.33
2565 2624 3.989817 GCCATTTTTCACATGACCAGAAC 59.010 43.478 0.00 0.00 0.00 3.01
3033 3092 8.923270 ACTTTGTTCAGAAATTCCAAGGAAATA 58.077 29.630 5.52 0.00 37.69 1.40
3126 3185 7.928706 ACAGGATAATGCTAGTCATACAAAGAC 59.071 37.037 0.00 0.00 34.33 3.01
3236 3297 6.948589 ACTGAGTACTGACTACTGATGAGTA 58.051 40.000 0.00 0.00 35.66 2.59
3263 3324 6.310149 TCTCTCAGTGAATCCAGCTATGATA 58.690 40.000 0.00 0.00 0.00 2.15
3306 3367 2.945668 ACTCAAAAAGTCAGTGGTGAGC 59.054 45.455 0.00 0.00 36.74 4.26
3314 3375 5.163513 ACAAGCACAAACTCAAAAAGTCAG 58.836 37.500 0.00 0.00 37.17 3.51
3622 3689 7.008021 ACCATGCCTTTATTTTTCAGTCAAT 57.992 32.000 0.00 0.00 0.00 2.57
3641 3708 8.912988 ACCAAATGATATAGTTTACCAACCATG 58.087 33.333 0.00 0.00 32.70 3.66
3825 3907 8.125978 TGCATGAAATGGAACTCTAAAATTCT 57.874 30.769 0.00 0.00 43.62 2.40
3931 4013 3.871006 TCATTCATCGCACAATACAGTCC 59.129 43.478 0.00 0.00 0.00 3.85
3963 4045 5.135383 ACATGCATTACAGTTATCCAGCAT 58.865 37.500 0.00 0.00 41.64 3.79
4177 4259 1.615116 CCTCCATTTCCTGCAGCTTGA 60.615 52.381 8.66 0.00 0.00 3.02
4219 4301 3.053019 TGGTTATCCATGGGCTGAATGAA 60.053 43.478 13.02 0.00 39.03 2.57
4429 4511 5.738909 CAGAGATCAGTGGGACTACAATTT 58.261 41.667 0.00 0.00 0.00 1.82
4431 4513 3.133721 GCAGAGATCAGTGGGACTACAAT 59.866 47.826 0.00 0.00 0.00 2.71
4432 4514 2.497675 GCAGAGATCAGTGGGACTACAA 59.502 50.000 0.00 0.00 0.00 2.41
4632 4714 6.202516 AGAGAACAAAACACATTTTCCGAA 57.797 33.333 0.00 0.00 35.79 4.30
4634 4716 6.310224 ACAAAGAGAACAAAACACATTTTCCG 59.690 34.615 0.00 0.00 35.79 4.30
4815 4897 5.062058 GCCAAACGATTTATTTCCATGTGTG 59.938 40.000 0.00 0.00 0.00 3.82
4985 5067 4.464008 AGACACTTTCTTGATTGAAGCCA 58.536 39.130 0.00 0.00 0.00 4.75
5216 5298 8.277713 CAGAAAACAAATAAACAGGCTGATTTG 58.722 33.333 26.16 26.16 42.41 2.32
5327 5424 0.545171 ATCCACATCACTGCTCTGGG 59.455 55.000 0.00 0.00 0.00 4.45
5349 5465 4.823790 TCTACAATAGCAGCAATGCATG 57.176 40.909 8.35 4.14 37.25 4.06
5444 5586 9.787435 AGAGTTGTAGTAGTCTATAAGATCCTG 57.213 37.037 0.00 0.00 30.16 3.86
5500 5642 1.225855 CTGTTGCTTGGAACGCTGTA 58.774 50.000 0.95 0.00 0.00 2.74
5605 5747 6.199937 TCAGCATCTTGAAAGCTAAAATCC 57.800 37.500 0.00 0.00 36.73 3.01
5617 5759 6.149973 CAGGTTTAAGAACATCAGCATCTTGA 59.850 38.462 0.00 0.00 37.51 3.02
5683 5825 3.282021 TGCTTCATCTGTTCCATTAGGC 58.718 45.455 0.00 0.00 33.74 3.93
5723 5865 1.160137 CGCTGAGGGAAAAACTCTGG 58.840 55.000 0.00 0.00 35.98 3.86
5732 5875 1.621317 TGTGTGTTATCGCTGAGGGAA 59.379 47.619 2.54 0.00 0.00 3.97
5741 5884 4.782156 TGAAACAAGCATGTGTGTTATCG 58.218 39.130 14.13 0.00 40.46 2.92
5742 5885 4.618489 GCTGAAACAAGCATGTGTGTTATC 59.382 41.667 14.13 13.41 43.01 1.75
5745 5888 2.813061 GCTGAAACAAGCATGTGTGTT 58.187 42.857 9.53 9.53 43.01 3.32
5746 5889 2.497107 GCTGAAACAAGCATGTGTGT 57.503 45.000 0.00 0.00 43.01 3.72
5805 5948 7.381323 AGAAATCAAGGTAGCATTTCCTTTTG 58.619 34.615 10.79 0.00 41.44 2.44
5808 5951 6.488715 AGAGAAATCAAGGTAGCATTTCCTT 58.511 36.000 10.79 0.00 43.79 3.36
5810 5953 6.765915 AAGAGAAATCAAGGTAGCATTTCC 57.234 37.500 10.79 5.29 37.27 3.13
5819 5962 4.263905 TGTGGGCATAAGAGAAATCAAGGT 60.264 41.667 0.00 0.00 0.00 3.50
5821 5964 5.735354 GCATGTGGGCATAAGAGAAATCAAG 60.735 44.000 0.00 0.00 33.30 3.02
5828 5971 0.179048 CGGCATGTGGGCATAAGAGA 60.179 55.000 0.00 0.00 43.60 3.10
5855 5998 7.989741 ACATTATTCAAACTAGATCCTGTCCTG 59.010 37.037 0.00 0.00 0.00 3.86
5861 6004 9.606631 GAGACAACATTATTCAAACTAGATCCT 57.393 33.333 0.00 0.00 0.00 3.24
5862 6005 9.606631 AGAGACAACATTATTCAAACTAGATCC 57.393 33.333 0.00 0.00 0.00 3.36
5873 6016 6.127925 TGCCATCACAAGAGACAACATTATTC 60.128 38.462 0.00 0.00 0.00 1.75
5880 6023 2.498167 ACTGCCATCACAAGAGACAAC 58.502 47.619 0.00 0.00 0.00 3.32
5886 6029 3.998913 TGGATTACTGCCATCACAAGA 57.001 42.857 0.00 0.00 0.00 3.02
5892 6035 7.750229 TTCATCTTTATGGATTACTGCCATC 57.250 36.000 0.00 0.00 44.70 3.51
5897 6040 7.572523 TGCCTTTCATCTTTATGGATTACTG 57.427 36.000 0.00 0.00 33.61 2.74
5912 6055 3.952323 CAGACAGAATGGATGCCTTTCAT 59.048 43.478 12.71 2.93 43.62 2.57
5919 6062 4.276926 GGGTTATTCAGACAGAATGGATGC 59.723 45.833 3.49 0.00 46.24 3.91
5922 6065 5.512942 TTGGGTTATTCAGACAGAATGGA 57.487 39.130 3.49 0.00 46.24 3.41
5936 6079 4.646492 GGCATGACAGAGAATTTGGGTTAT 59.354 41.667 0.00 0.00 0.00 1.89
5967 6125 8.274322 TCATTGCATATCCTTCTCCTAGAAAAA 58.726 33.333 0.00 0.00 33.19 1.94
5968 6126 7.805163 TCATTGCATATCCTTCTCCTAGAAAA 58.195 34.615 0.00 0.00 33.19 2.29
5971 6129 6.499699 ACATCATTGCATATCCTTCTCCTAGA 59.500 38.462 0.00 0.00 0.00 2.43
5972 6130 6.709281 ACATCATTGCATATCCTTCTCCTAG 58.291 40.000 0.00 0.00 0.00 3.02
5973 6131 6.499699 AGACATCATTGCATATCCTTCTCCTA 59.500 38.462 0.00 0.00 0.00 2.94
5974 6132 5.310068 AGACATCATTGCATATCCTTCTCCT 59.690 40.000 0.00 0.00 0.00 3.69
5977 6135 5.072736 TCCAGACATCATTGCATATCCTTCT 59.927 40.000 0.00 0.00 0.00 2.85
5985 6143 3.881688 GCTAGTTCCAGACATCATTGCAT 59.118 43.478 0.00 0.00 0.00 3.96
6058 6216 4.410400 GACGGGCTCCACTTGGGG 62.410 72.222 0.00 0.00 39.22 4.96
6160 6318 1.791555 CGTGCAAGCGTCATCATTTCC 60.792 52.381 0.00 0.00 0.00 3.13
6190 6348 1.135141 GCGCCACTGCCATAATCAAAA 60.135 47.619 0.00 0.00 0.00 2.44
6222 6380 2.509916 CAGGATCCAGGGCAGCTC 59.490 66.667 15.82 0.00 0.00 4.09
6241 6399 8.123639 TCAACTTACTTGCATCTAGAACTAGT 57.876 34.615 14.42 14.42 34.84 2.57
6308 6467 3.189285 ACTTGCAACACAAATTGACAGC 58.811 40.909 0.00 0.00 37.96 4.40
6313 6472 5.104374 AGAACAGACTTGCAACACAAATTG 58.896 37.500 0.00 0.00 37.96 2.32
6350 6509 2.459555 ATAACATGGAAGGGCAAGGG 57.540 50.000 0.00 0.00 0.00 3.95
6351 6510 6.015434 GGTAATAATAACATGGAAGGGCAAGG 60.015 42.308 0.00 0.00 0.00 3.61
6352 6511 6.549364 TGGTAATAATAACATGGAAGGGCAAG 59.451 38.462 0.00 0.00 0.00 4.01
6353 6512 6.436027 TGGTAATAATAACATGGAAGGGCAA 58.564 36.000 0.00 0.00 0.00 4.52
6354 6513 6.019656 TGGTAATAATAACATGGAAGGGCA 57.980 37.500 0.00 0.00 0.00 5.36
6355 6514 7.888546 ACTATGGTAATAATAACATGGAAGGGC 59.111 37.037 6.23 0.00 39.39 5.19
6468 6627 3.616821 TGTTTGATACTTCGCTTGGATCG 59.383 43.478 0.00 0.00 0.00 3.69
6513 6672 2.032528 CGCTGCCCCTTTGAGTCA 59.967 61.111 0.00 0.00 0.00 3.41
6564 6723 1.065636 TGGATGCCTTTGAGCTGAGAG 60.066 52.381 0.00 0.00 0.00 3.20
6567 6726 0.986527 TCTGGATGCCTTTGAGCTGA 59.013 50.000 0.00 0.00 0.00 4.26
6813 6972 0.774276 TGAACCCCATAGCAACCACA 59.226 50.000 0.00 0.00 0.00 4.17
6838 6997 4.018960 AGGTTGCATCAGAGAACCATAACT 60.019 41.667 4.39 0.00 41.48 2.24
6840 6999 4.574674 AGGTTGCATCAGAGAACCATAA 57.425 40.909 4.39 0.00 41.48 1.90
6849 7008 1.483827 CCTCAGCTAGGTTGCATCAGA 59.516 52.381 0.00 0.00 40.94 3.27
6854 7013 0.610174 CACTCCTCAGCTAGGTTGCA 59.390 55.000 0.00 0.00 46.62 4.08
6855 7014 0.610687 ACACTCCTCAGCTAGGTTGC 59.389 55.000 0.00 0.00 46.62 4.17
6856 7015 2.037772 ACAACACTCCTCAGCTAGGTTG 59.962 50.000 11.13 11.13 46.62 3.77
6857 7016 2.330216 ACAACACTCCTCAGCTAGGTT 58.670 47.619 0.00 0.00 46.62 3.50
6858 7017 2.016905 ACAACACTCCTCAGCTAGGT 57.983 50.000 8.51 0.00 46.62 3.08
6901 7065 4.356162 CGAATTACGTCGGCTCTTATTG 57.644 45.455 0.00 0.00 37.37 1.90
6934 7098 3.081061 GGCACCATCATAACACAGACAA 58.919 45.455 0.00 0.00 0.00 3.18
6955 7127 5.337169 CCCACATATTTTTACAACACCTGGG 60.337 44.000 0.00 0.00 0.00 4.45
6962 7134 9.198837 CTACAAAACCCCACATATTTTTACAAC 57.801 33.333 0.00 0.00 0.00 3.32
6963 7135 7.873505 GCTACAAAACCCCACATATTTTTACAA 59.126 33.333 0.00 0.00 0.00 2.41
6974 7146 3.818295 AATAGGCTACAAAACCCCACA 57.182 42.857 0.00 0.00 0.00 4.17
7006 7178 4.953579 GGATGGATACCTGGAGATCTCTAC 59.046 50.000 21.81 7.32 0.00 2.59
7017 7191 3.139025 AGGTTGGATTGGATGGATACCTG 59.861 47.826 0.00 0.00 33.71 4.00
7023 7197 2.621407 GCAGAAGGTTGGATTGGATGGA 60.621 50.000 0.00 0.00 0.00 3.41
7029 7203 2.624838 ACAACTGCAGAAGGTTGGATTG 59.375 45.455 23.35 13.20 44.71 2.67
7049 7223 6.493116 CCAGACTGAGATTGAAATGCATTAC 58.507 40.000 13.39 2.74 0.00 1.89
7051 7225 4.142227 GCCAGACTGAGATTGAAATGCATT 60.142 41.667 5.99 5.99 0.00 3.56
7062 7236 3.372897 TGAAGAGATGCCAGACTGAGAT 58.627 45.455 3.32 0.00 0.00 2.75
7068 7242 3.065095 GCAAAGATGAAGAGATGCCAGAC 59.935 47.826 0.00 0.00 0.00 3.51
7084 7258 8.090788 ACCTAGAATAATACCTCAAGCAAAGA 57.909 34.615 0.00 0.00 0.00 2.52
7113 7287 1.316735 GCAACGTGTACTCGATCGTTC 59.683 52.381 22.86 5.00 43.03 3.95
7114 7288 1.334054 GCAACGTGTACTCGATCGTT 58.666 50.000 22.86 13.77 45.16 3.85
7119 7293 0.318360 CACTGGCAACGTGTACTCGA 60.318 55.000 22.86 0.21 42.51 4.04
7128 7302 1.262417 CTATATGCAGCACTGGCAACG 59.738 52.381 0.00 0.00 45.60 4.10
7145 7319 2.995283 TCTCAACAGCTGCAATGCTAT 58.005 42.857 15.27 0.00 41.98 2.97
7149 7323 3.047796 GTGTTTCTCAACAGCTGCAATG 58.952 45.455 15.27 10.99 43.83 2.82
7161 7335 6.568869 CAAAACCCTAAACATGTGTTTCTCA 58.431 36.000 13.86 0.00 44.15 3.27
7162 7336 5.462068 GCAAAACCCTAAACATGTGTTTCTC 59.538 40.000 13.86 4.11 44.15 2.87
7163 7337 5.356426 GCAAAACCCTAAACATGTGTTTCT 58.644 37.500 13.86 0.00 44.15 2.52
7164 7338 4.208253 CGCAAAACCCTAAACATGTGTTTC 59.792 41.667 13.86 1.34 44.15 2.78
7172 7347 2.054232 TCCACGCAAAACCCTAAACA 57.946 45.000 0.00 0.00 0.00 2.83
7336 7514 5.401531 AGACAGATGCTAGACCGTTTTAA 57.598 39.130 0.00 0.00 0.00 1.52
7468 7646 2.683968 TCATGCTCGGACTAAACACAC 58.316 47.619 0.00 0.00 0.00 3.82
7495 7673 2.649331 ACTTACCTGACGGTGAATCG 57.351 50.000 0.00 0.00 45.18 3.34
7528 7706 3.206150 GCACTCCTATATTGTGGTGTGG 58.794 50.000 17.74 0.00 43.78 4.17
7574 7752 5.046529 CCATTTGGATAGACTCAGTTCTCG 58.953 45.833 0.00 0.00 37.39 4.04
7655 7833 1.593196 CTCGAAGAAGCAACCCACAA 58.407 50.000 0.00 0.00 34.09 3.33
7723 7901 2.283298 CTGTGTTGATGATAGGCGCTT 58.717 47.619 7.64 0.52 0.00 4.68
7749 7927 6.996282 TGAGTATATTCACCGATGTAGACTGA 59.004 38.462 0.00 0.00 0.00 3.41
7756 7934 4.893524 TGGAGTGAGTATATTCACCGATGT 59.106 41.667 21.06 5.90 46.81 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.