Multiple sequence alignment - TraesCS7B01G321500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G321500 chr7B 100.000 2588 0 0 1 2588 572389401 572391988 0.000000e+00 4780.0
1 TraesCS7B01G321500 chr7D 90.247 2102 122 40 218 2293 531826577 531828621 0.000000e+00 2669.0
2 TraesCS7B01G321500 chr7D 87.908 306 29 5 1 305 531826324 531826622 1.140000e-93 353.0
3 TraesCS7B01G321500 chr7D 100.000 31 0 0 2558 2588 531828878 531828908 1.000000e-04 58.4
4 TraesCS7B01G321500 chr7A 88.318 1498 88 53 260 1709 612369170 612370628 0.000000e+00 1716.0
5 TraesCS7B01G321500 chr7A 86.711 301 17 8 1730 2023 612370620 612370904 1.930000e-81 313.0
6 TraesCS7B01G321500 chr7A 86.447 273 25 6 1 271 612368960 612369222 3.260000e-74 289.0
7 TraesCS7B01G321500 chr1B 89.109 606 58 4 817 1416 594863238 594862635 0.000000e+00 747.0
8 TraesCS7B01G321500 chrUn 89.840 187 12 5 1119 1304 38166661 38166481 1.550000e-57 233.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G321500 chr7B 572389401 572391988 2587 False 4780.000000 4780 100.000000 1 2588 1 chr7B.!!$F1 2587
1 TraesCS7B01G321500 chr7D 531826324 531828908 2584 False 1026.800000 2669 92.718333 1 2588 3 chr7D.!!$F1 2587
2 TraesCS7B01G321500 chr7A 612368960 612370904 1944 False 772.666667 1716 87.158667 1 2023 3 chr7A.!!$F1 2022
3 TraesCS7B01G321500 chr1B 594862635 594863238 603 True 747.000000 747 89.109000 817 1416 1 chr1B.!!$R1 599

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
330 375 0.038159 CTTCTTCGAACGAGGCCACT 60.038 55.0 5.01 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2164 2274 0.17691 TCGGCATTACATGGAGCGAA 59.823 50.0 0.0 0.0 0.0 4.7 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 84 4.731503 GCAGCACGCACGCAAGAG 62.732 66.667 0.00 0.00 41.79 2.85
83 85 3.037833 CAGCACGCACGCAAGAGA 61.038 61.111 0.00 0.00 43.62 3.10
87 89 2.431601 ACGCACGCAAGAGAGAGC 60.432 61.111 0.00 0.00 43.62 4.09
88 90 2.126149 CGCACGCAAGAGAGAGCT 60.126 61.111 0.00 0.00 43.62 4.09
89 91 2.157701 CGCACGCAAGAGAGAGCTC 61.158 63.158 5.27 5.27 41.62 4.09
143 145 1.029408 TTTCCAACTGCTGTGTGCGT 61.029 50.000 0.00 0.00 46.63 5.24
175 177 5.010112 ACACACTATCCATGACCTTATCTCG 59.990 44.000 0.00 0.00 0.00 4.04
177 179 4.767409 CACTATCCATGACCTTATCTCGGA 59.233 45.833 0.00 0.00 34.18 4.55
178 180 5.013547 ACTATCCATGACCTTATCTCGGAG 58.986 45.833 0.00 0.00 33.46 4.63
179 181 3.314307 TCCATGACCTTATCTCGGAGT 57.686 47.619 4.69 0.00 0.00 3.85
180 182 4.448720 TCCATGACCTTATCTCGGAGTA 57.551 45.455 4.69 0.00 0.00 2.59
181 183 4.142790 TCCATGACCTTATCTCGGAGTAC 58.857 47.826 4.69 0.00 0.00 2.73
186 188 4.639310 TGACCTTATCTCGGAGTACTGTTC 59.361 45.833 0.00 0.00 0.00 3.18
195 197 5.531659 TCTCGGAGTACTGTTCTTATCATCC 59.468 44.000 0.00 0.00 0.00 3.51
199 201 5.755861 GGAGTACTGTTCTTATCATCCTTGC 59.244 44.000 0.00 0.00 0.00 4.01
204 206 6.344500 ACTGTTCTTATCATCCTTGCTACAG 58.656 40.000 0.00 0.00 36.32 2.74
206 208 6.341316 TGTTCTTATCATCCTTGCTACAGTC 58.659 40.000 0.00 0.00 0.00 3.51
266 310 4.523558 AGAAGAAGCCACGTAACTCTAACT 59.476 41.667 0.00 0.00 0.00 2.24
271 315 4.330250 AGCCACGTAACTCTAACTCTGTA 58.670 43.478 0.00 0.00 0.00 2.74
310 355 2.550830 AGCCACGTCACTCTGATTTT 57.449 45.000 0.00 0.00 0.00 1.82
311 356 2.417719 AGCCACGTCACTCTGATTTTC 58.582 47.619 0.00 0.00 0.00 2.29
330 375 0.038159 CTTCTTCGAACGAGGCCACT 60.038 55.000 5.01 0.00 0.00 4.00
350 395 2.667199 TCGGTGACTCACGAGCGA 60.667 61.111 3.04 4.30 34.83 4.93
405 450 3.972971 CTCTGCCAGCCAGCACCTC 62.973 68.421 0.00 0.00 41.50 3.85
468 513 3.844577 AGCAGTGCTGATGACAATTTC 57.155 42.857 18.98 0.00 37.57 2.17
484 529 1.529226 TTTCGTACCATGGCCAGTTG 58.471 50.000 13.05 5.28 0.00 3.16
514 564 0.643820 GGTACGAATTTCCGCGACAG 59.356 55.000 8.23 0.00 0.00 3.51
526 576 1.089481 CGCGACAGCATGGTAATGGT 61.089 55.000 0.00 0.00 45.34 3.55
621 673 6.238484 GCACAAGCAATCTTATCTAAATCCGT 60.238 38.462 0.00 0.00 41.58 4.69
798 870 1.514228 CGCGCTAGCTCTTCGTCAA 60.514 57.895 13.93 0.00 42.32 3.18
952 1032 3.559657 GACCGATCCAGCCGATCCG 62.560 68.421 5.94 2.96 44.07 4.18
975 1055 2.618427 ATCCTCCCCAGCCTCTCCAG 62.618 65.000 0.00 0.00 0.00 3.86
976 1056 3.478274 CTCCCCAGCCTCTCCAGC 61.478 72.222 0.00 0.00 0.00 4.85
979 1059 2.686470 CCCAGCCTCTCCAGCTCA 60.686 66.667 0.00 0.00 38.95 4.26
981 1061 1.078567 CCAGCCTCTCCAGCTCAAC 60.079 63.158 0.00 0.00 38.95 3.18
983 1063 1.537397 AGCCTCTCCAGCTCAACCA 60.537 57.895 0.00 0.00 34.91 3.67
984 1064 1.130054 AGCCTCTCCAGCTCAACCAA 61.130 55.000 0.00 0.00 34.91 3.67
986 1066 0.676151 CCTCTCCAGCTCAACCAAGC 60.676 60.000 0.00 0.00 42.82 4.01
987 1067 0.676151 CTCTCCAGCTCAACCAAGCC 60.676 60.000 0.00 0.00 43.56 4.35
990 1070 3.058160 CAGCTCAACCAAGCCCCG 61.058 66.667 0.00 0.00 43.56 5.73
1017 1103 3.011517 ATGGGGTGCGGCTTCTCT 61.012 61.111 0.00 0.00 0.00 3.10
1599 1691 3.753846 GCCAGGACTAGCTAGGATCTTCT 60.754 52.174 24.35 4.92 0.00 2.85
1608 1700 2.360801 GCTAGGATCTTCTTCTGCTCGT 59.639 50.000 0.00 0.00 0.00 4.18
1611 1703 2.564947 AGGATCTTCTTCTGCTCGTTGT 59.435 45.455 0.00 0.00 0.00 3.32
1616 1708 0.039437 TCTTCTGCTCGTTGTCGTCC 60.039 55.000 0.00 0.00 38.33 4.79
1624 1716 2.280592 GTTGTCGTCCCCGTTGCT 60.281 61.111 0.00 0.00 35.01 3.91
1678 1773 4.491234 TTTGTAGTTTTGTACCGCCATG 57.509 40.909 0.00 0.00 0.00 3.66
1681 1776 4.135306 TGTAGTTTTGTACCGCCATGAAA 58.865 39.130 0.00 0.00 0.00 2.69
1698 1793 7.148340 CGCCATGAAAGAACTAGATTTTTCTCT 60.148 37.037 14.46 3.09 30.55 3.10
1712 1807 6.772716 AGATTTTTCTCTTTCTGTTAGTGCCA 59.227 34.615 0.00 0.00 0.00 4.92
1715 1810 4.890158 TCTCTTTCTGTTAGTGCCATCA 57.110 40.909 0.00 0.00 0.00 3.07
1720 1815 3.616956 TCTGTTAGTGCCATCAAGAGG 57.383 47.619 0.00 0.00 0.00 3.69
1721 1816 3.173151 TCTGTTAGTGCCATCAAGAGGA 58.827 45.455 0.00 0.00 0.00 3.71
1736 1831 5.851720 TCAAGAGGAATATAGCTCTGCTTG 58.148 41.667 0.00 0.00 40.44 4.01
1738 1833 5.467035 AGAGGAATATAGCTCTGCTTGTC 57.533 43.478 0.00 0.00 40.44 3.18
1739 1834 4.283212 AGAGGAATATAGCTCTGCTTGTCC 59.717 45.833 0.00 0.74 40.44 4.02
1743 1838 1.871418 ATAGCTCTGCTTGTCCTCCA 58.129 50.000 0.00 0.00 40.44 3.86
1857 1957 9.806203 CATTTTCCTGCTTGTTCATCATTAATA 57.194 29.630 0.00 0.00 0.00 0.98
1861 1961 8.985315 TCCTGCTTGTTCATCATTAATAATCT 57.015 30.769 0.00 0.00 0.00 2.40
1862 1962 9.060347 TCCTGCTTGTTCATCATTAATAATCTC 57.940 33.333 0.00 0.00 0.00 2.75
1863 1963 9.064706 CCTGCTTGTTCATCATTAATAATCTCT 57.935 33.333 0.00 0.00 0.00 3.10
1885 1985 1.872952 TGCACATGTTTCTCTTCGTGG 59.127 47.619 0.00 0.00 0.00 4.94
1886 1986 1.873591 GCACATGTTTCTCTTCGTGGT 59.126 47.619 0.00 0.00 0.00 4.16
1949 2054 5.466728 GTGCGGCTAATGATAATTGAGAAGA 59.533 40.000 0.00 0.00 0.00 2.87
1961 2066 9.948964 TGATAATTGAGAAGAGAAGAATGAACA 57.051 29.630 0.00 0.00 0.00 3.18
2004 2114 2.368439 CAATGTCGTCCCACCATGATT 58.632 47.619 0.00 0.00 0.00 2.57
2013 2123 1.671979 CCACCATGATTGCGATCTGT 58.328 50.000 15.08 6.95 33.28 3.41
2051 2161 1.078918 CCCATTCGCTCTGCACTCA 60.079 57.895 0.00 0.00 0.00 3.41
2110 2220 2.602267 TCTGACTTTCGGGCGGGA 60.602 61.111 0.00 0.00 0.00 5.14
2118 2228 1.263217 CTTTCGGGCGGGATTAATTCG 59.737 52.381 7.50 7.50 0.00 3.34
2123 2233 2.414138 CGGGCGGGATTAATTCGTAATC 59.586 50.000 11.79 0.00 45.17 1.75
2124 2234 3.671716 GGGCGGGATTAATTCGTAATCT 58.328 45.455 11.79 0.00 45.21 2.40
2125 2235 4.618927 CGGGCGGGATTAATTCGTAATCTA 60.619 45.833 11.79 0.00 45.21 1.98
2126 2236 5.425630 GGGCGGGATTAATTCGTAATCTAT 58.574 41.667 11.79 0.00 45.21 1.98
2128 2238 6.338937 GGCGGGATTAATTCGTAATCTATCT 58.661 40.000 11.79 0.00 45.21 1.98
2179 2289 3.063997 GGTCACTTTCGCTCCATGTAATG 59.936 47.826 0.00 0.00 46.21 1.90
2184 2294 0.176910 TCGCTCCATGTAATGCCGAA 59.823 50.000 0.00 0.00 44.97 4.30
2197 2307 2.743928 CCGAAGCTGCCACCTCAC 60.744 66.667 0.00 0.00 0.00 3.51
2209 2320 1.614317 CCACCTCACCAAACCCTCATC 60.614 57.143 0.00 0.00 0.00 2.92
2213 2324 2.224867 CCTCACCAAACCCTCATCAACT 60.225 50.000 0.00 0.00 0.00 3.16
2216 2327 3.138283 TCACCAAACCCTCATCAACTTCT 59.862 43.478 0.00 0.00 0.00 2.85
2218 2329 3.891366 ACCAAACCCTCATCAACTTCTTG 59.109 43.478 0.00 0.00 0.00 3.02
2231 2342 6.567687 TCAACTTCTTGTTCAGACAAAACA 57.432 33.333 0.00 0.00 44.65 2.83
2248 2359 5.109903 CAAAACAAACACCCACCGAATAAA 58.890 37.500 0.00 0.00 0.00 1.40
2252 2363 2.032680 ACACCCACCGAATAAATCCG 57.967 50.000 0.00 0.00 0.00 4.18
2267 2378 2.595750 ATCCGAATGTCAAACCCCAA 57.404 45.000 0.00 0.00 0.00 4.12
2269 2380 0.601057 CCGAATGTCAAACCCCAACC 59.399 55.000 0.00 0.00 0.00 3.77
2270 2381 1.616159 CGAATGTCAAACCCCAACCT 58.384 50.000 0.00 0.00 0.00 3.50
2279 2395 2.064242 AACCCCAACCTTCCTCGGTG 62.064 60.000 0.00 0.00 37.36 4.94
2289 2405 2.417924 CCTTCCTCGGTGTCATCTCAAG 60.418 54.545 0.00 0.00 0.00 3.02
2313 2477 9.825972 AAGTTTACAATTGATTGAAGATACACG 57.174 29.630 13.59 0.00 40.14 4.49
2320 2484 0.787787 TTGAAGATACACGCACGCAC 59.212 50.000 0.00 0.00 0.00 5.34
2324 2488 3.680072 GATACACGCACGCACGCAC 62.680 63.158 0.00 0.00 36.19 5.34
2350 2518 6.966632 GCATGTGAATTTCTATACGCAAAAGA 59.033 34.615 0.00 0.00 0.00 2.52
2359 2527 1.365699 TACGCAAAAGATTCCCGAGC 58.634 50.000 0.00 0.00 0.00 5.03
2372 2540 3.644966 TCCCGAGCCATTTTACAGAAT 57.355 42.857 0.00 0.00 0.00 2.40
2373 2541 4.764050 TCCCGAGCCATTTTACAGAATA 57.236 40.909 0.00 0.00 0.00 1.75
2374 2542 5.105567 TCCCGAGCCATTTTACAGAATAA 57.894 39.130 0.00 0.00 0.00 1.40
2375 2543 5.690865 TCCCGAGCCATTTTACAGAATAAT 58.309 37.500 0.00 0.00 0.00 1.28
2376 2544 6.126409 TCCCGAGCCATTTTACAGAATAATT 58.874 36.000 0.00 0.00 0.00 1.40
2377 2545 7.284074 TCCCGAGCCATTTTACAGAATAATTA 58.716 34.615 0.00 0.00 0.00 1.40
2378 2546 7.444183 TCCCGAGCCATTTTACAGAATAATTAG 59.556 37.037 0.00 0.00 0.00 1.73
2384 2552 9.233232 GCCATTTTACAGAATAATTAGAAACGG 57.767 33.333 0.00 0.00 0.00 4.44
2410 2580 7.904205 AGTACTACTACATTACAAGCCTTGTT 58.096 34.615 16.40 0.00 42.22 2.83
2411 2581 8.033626 AGTACTACTACATTACAAGCCTTGTTC 58.966 37.037 16.40 0.00 42.22 3.18
2412 2582 6.171213 ACTACTACATTACAAGCCTTGTTCC 58.829 40.000 16.40 0.00 42.22 3.62
2413 2583 5.242795 ACTACATTACAAGCCTTGTTCCT 57.757 39.130 16.40 0.00 42.22 3.36
2414 2584 5.003804 ACTACATTACAAGCCTTGTTCCTG 58.996 41.667 16.40 12.68 42.22 3.86
2415 2585 4.098914 ACATTACAAGCCTTGTTCCTGA 57.901 40.909 16.40 0.00 42.22 3.86
2416 2586 4.074970 ACATTACAAGCCTTGTTCCTGAG 58.925 43.478 16.40 3.40 42.22 3.35
2417 2587 4.202461 ACATTACAAGCCTTGTTCCTGAGA 60.202 41.667 16.40 0.00 42.22 3.27
2418 2588 2.262423 ACAAGCCTTGTTCCTGAGAC 57.738 50.000 3.74 0.00 42.22 3.36
2419 2589 1.202818 ACAAGCCTTGTTCCTGAGACC 60.203 52.381 3.74 0.00 42.22 3.85
2444 2618 1.349688 TGTTCAGTTTGTATCCGGCCT 59.650 47.619 0.00 0.00 0.00 5.19
2450 2624 4.698304 TCAGTTTGTATCCGGCCTAAAAAG 59.302 41.667 0.00 0.00 0.00 2.27
2454 2628 6.265876 AGTTTGTATCCGGCCTAAAAAGAAAA 59.734 34.615 0.00 0.00 0.00 2.29
2455 2629 6.651975 TTGTATCCGGCCTAAAAAGAAAAA 57.348 33.333 0.00 0.00 0.00 1.94
2456 2630 6.844097 TGTATCCGGCCTAAAAAGAAAAAT 57.156 33.333 0.00 0.00 0.00 1.82
2458 2632 7.992008 TGTATCCGGCCTAAAAAGAAAAATAG 58.008 34.615 0.00 0.00 0.00 1.73
2459 2633 7.830201 TGTATCCGGCCTAAAAAGAAAAATAGA 59.170 33.333 0.00 0.00 0.00 1.98
2460 2634 6.505044 TCCGGCCTAAAAAGAAAAATAGAC 57.495 37.500 0.00 0.00 0.00 2.59
2461 2635 6.243148 TCCGGCCTAAAAAGAAAAATAGACT 58.757 36.000 0.00 0.00 0.00 3.24
2462 2636 6.373495 TCCGGCCTAAAAAGAAAAATAGACTC 59.627 38.462 0.00 0.00 0.00 3.36
2463 2637 6.404403 CCGGCCTAAAAAGAAAAATAGACTCC 60.404 42.308 0.00 0.00 0.00 3.85
2464 2638 6.374613 CGGCCTAAAAAGAAAAATAGACTCCT 59.625 38.462 0.00 0.00 0.00 3.69
2465 2639 7.551617 CGGCCTAAAAAGAAAAATAGACTCCTA 59.448 37.037 0.00 0.00 0.00 2.94
2466 2640 9.239551 GGCCTAAAAAGAAAAATAGACTCCTAA 57.760 33.333 0.00 0.00 0.00 2.69
2478 2652 2.091775 AGACTCCTAACCTATCGCCTGT 60.092 50.000 0.00 0.00 0.00 4.00
2484 2658 2.622064 AACCTATCGCCTGTCATTCC 57.378 50.000 0.00 0.00 0.00 3.01
2491 2665 4.326255 CCTGTCATTCCAGGTGGC 57.674 61.111 0.00 0.00 45.81 5.01
2515 2689 3.706140 GCGGAATGCGTAGGTGAG 58.294 61.111 0.00 0.00 0.00 3.51
2516 2690 2.526120 GCGGAATGCGTAGGTGAGC 61.526 63.158 0.00 0.00 0.00 4.26
2518 2692 1.421410 CGGAATGCGTAGGTGAGCAC 61.421 60.000 0.00 0.00 46.83 4.40
2519 2693 1.421410 GGAATGCGTAGGTGAGCACG 61.421 60.000 0.00 3.06 46.83 5.34
2520 2694 0.457853 GAATGCGTAGGTGAGCACGA 60.458 55.000 9.94 0.00 46.83 4.35
2521 2695 0.037697 AATGCGTAGGTGAGCACGAA 60.038 50.000 9.94 1.17 46.83 3.85
2522 2696 0.175760 ATGCGTAGGTGAGCACGAAT 59.824 50.000 9.94 3.27 46.83 3.34
2523 2697 0.735978 TGCGTAGGTGAGCACGAATG 60.736 55.000 9.94 0.00 40.56 2.67
2524 2698 0.457853 GCGTAGGTGAGCACGAATGA 60.458 55.000 9.94 0.00 40.56 2.57
2525 2699 1.990799 CGTAGGTGAGCACGAATGAA 58.009 50.000 0.00 0.00 40.56 2.57
2526 2700 2.333926 CGTAGGTGAGCACGAATGAAA 58.666 47.619 0.00 0.00 40.56 2.69
2527 2701 2.345641 CGTAGGTGAGCACGAATGAAAG 59.654 50.000 0.00 0.00 40.56 2.62
2528 2702 1.160137 AGGTGAGCACGAATGAAAGC 58.840 50.000 0.00 0.00 0.00 3.51
2529 2703 0.874390 GGTGAGCACGAATGAAAGCA 59.126 50.000 0.00 0.00 0.00 3.91
2530 2704 1.470098 GGTGAGCACGAATGAAAGCAT 59.530 47.619 0.00 0.00 35.92 3.79
2531 2705 2.512885 GTGAGCACGAATGAAAGCATG 58.487 47.619 0.00 0.00 34.26 4.06
2532 2706 1.469703 TGAGCACGAATGAAAGCATGG 59.530 47.619 0.00 0.00 34.26 3.66
2533 2707 1.739466 GAGCACGAATGAAAGCATGGA 59.261 47.619 0.00 0.00 34.26 3.41
2534 2708 1.741706 AGCACGAATGAAAGCATGGAG 59.258 47.619 0.00 0.00 34.26 3.86
2535 2709 1.739466 GCACGAATGAAAGCATGGAGA 59.261 47.619 0.00 0.00 34.26 3.71
2536 2710 2.162208 GCACGAATGAAAGCATGGAGAA 59.838 45.455 0.00 0.00 34.26 2.87
2537 2711 3.730061 GCACGAATGAAAGCATGGAGAAG 60.730 47.826 0.00 0.00 34.26 2.85
2538 2712 3.012518 ACGAATGAAAGCATGGAGAAGG 58.987 45.455 0.00 0.00 34.26 3.46
2539 2713 3.273434 CGAATGAAAGCATGGAGAAGGA 58.727 45.455 0.00 0.00 34.26 3.36
2540 2714 3.311871 CGAATGAAAGCATGGAGAAGGAG 59.688 47.826 0.00 0.00 34.26 3.69
2541 2715 2.119801 TGAAAGCATGGAGAAGGAGC 57.880 50.000 0.00 0.00 0.00 4.70
2542 2716 1.012841 GAAAGCATGGAGAAGGAGCG 58.987 55.000 0.00 0.00 0.00 5.03
2543 2717 0.393537 AAAGCATGGAGAAGGAGCGG 60.394 55.000 0.00 0.00 0.00 5.52
2544 2718 2.203126 GCATGGAGAAGGAGCGGG 60.203 66.667 0.00 0.00 0.00 6.13
2545 2719 2.203126 CATGGAGAAGGAGCGGGC 60.203 66.667 0.00 0.00 0.00 6.13
2546 2720 2.688666 ATGGAGAAGGAGCGGGCA 60.689 61.111 0.00 0.00 0.00 5.36
2547 2721 2.300967 ATGGAGAAGGAGCGGGCAA 61.301 57.895 0.00 0.00 0.00 4.52
2548 2722 2.124942 GGAGAAGGAGCGGGCAAG 60.125 66.667 0.00 0.00 0.00 4.01
2549 2723 2.821810 GAGAAGGAGCGGGCAAGC 60.822 66.667 0.00 0.00 37.41 4.01
2550 2724 4.416738 AGAAGGAGCGGGCAAGCC 62.417 66.667 1.52 1.52 38.01 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
175 177 5.755861 GCAAGGATGATAAGAACAGTACTCC 59.244 44.000 0.00 0.00 0.00 3.85
177 179 6.552445 AGCAAGGATGATAAGAACAGTACT 57.448 37.500 0.00 0.00 0.00 2.73
178 180 7.265673 TGTAGCAAGGATGATAAGAACAGTAC 58.734 38.462 0.00 0.00 0.00 2.73
179 181 7.124298 ACTGTAGCAAGGATGATAAGAACAGTA 59.876 37.037 0.00 0.00 32.54 2.74
180 182 6.070538 ACTGTAGCAAGGATGATAAGAACAGT 60.071 38.462 0.00 0.00 30.65 3.55
181 183 6.344500 ACTGTAGCAAGGATGATAAGAACAG 58.656 40.000 0.00 0.00 0.00 3.16
186 188 5.069648 TCCAGACTGTAGCAAGGATGATAAG 59.930 44.000 0.93 0.00 0.00 1.73
195 197 1.274728 AGTGCTCCAGACTGTAGCAAG 59.725 52.381 22.64 3.50 47.00 4.01
199 201 0.894141 AGCAGTGCTCCAGACTGTAG 59.106 55.000 13.14 0.00 42.47 2.74
212 214 1.528586 GTGTACAGCAGTTGAGCAGTG 59.471 52.381 0.00 0.00 35.73 3.66
266 310 5.826208 TCTTCTGTAACTGACTGTGTACAGA 59.174 40.000 18.18 20.48 46.59 3.41
271 315 4.372656 GCTTCTTCTGTAACTGACTGTGT 58.627 43.478 0.00 0.00 0.00 3.72
310 355 0.038526 GTGGCCTCGTTCGAAGAAGA 60.039 55.000 3.32 0.00 45.90 2.87
311 356 0.038159 AGTGGCCTCGTTCGAAGAAG 60.038 55.000 3.32 0.00 45.90 2.85
330 375 2.962827 GCTCGTGAGTCACCGACGA 61.963 63.158 17.57 10.22 39.68 4.20
350 395 4.860022 CCCAAGTTCCAGATAATCAAGGT 58.140 43.478 0.00 0.00 0.00 3.50
391 436 4.357279 AAGGAGGTGCTGGCTGGC 62.357 66.667 0.00 0.00 0.00 4.85
405 450 1.333636 ATCTGGAGACGGGCAGAAGG 61.334 60.000 0.00 0.00 37.31 3.46
457 502 3.243068 GGCCATGGTACGAAATTGTCATC 60.243 47.826 14.67 0.00 0.00 2.92
468 513 3.903783 CCAACTGGCCATGGTACG 58.096 61.111 16.19 1.41 31.84 3.67
484 529 3.790152 AATTCGTACCCGTCTCTAACC 57.210 47.619 0.00 0.00 35.01 2.85
526 576 6.591750 TTTTCAAGCCGGAAATAATTGGTA 57.408 33.333 5.05 0.00 36.71 3.25
668 720 4.241555 ATAAGGGCGCGGGCAGAG 62.242 66.667 26.61 0.00 42.47 3.35
669 721 4.235762 GATAAGGGCGCGGGCAGA 62.236 66.667 26.61 8.01 42.47 4.26
678 730 1.282382 TATAAGGCGGGGATAAGGGC 58.718 55.000 0.00 0.00 0.00 5.19
739 806 4.367023 GGCGCGTGGTGTGGACTA 62.367 66.667 8.43 0.00 0.00 2.59
879 955 1.748403 CGAGGCTATAAGCTGGGCA 59.252 57.895 0.00 0.00 41.99 5.36
959 1039 3.478274 GCTGGAGAGGCTGGGGAG 61.478 72.222 0.00 0.00 0.00 4.30
990 1070 3.443045 CACCCCATGTCGGCAAGC 61.443 66.667 0.00 0.00 0.00 4.01
991 1071 3.443045 GCACCCCATGTCGGCAAG 61.443 66.667 0.00 0.00 0.00 4.01
997 1077 3.134127 GAAGCCGCACCCCATGTC 61.134 66.667 0.00 0.00 0.00 3.06
998 1078 3.628646 GAGAAGCCGCACCCCATGT 62.629 63.158 0.00 0.00 0.00 3.21
1599 1691 1.006571 GGGACGACAACGAGCAGAA 60.007 57.895 0.00 0.00 42.66 3.02
1616 1708 4.383602 CGAAACGGCAGCAACGGG 62.384 66.667 0.00 0.00 35.23 5.28
1624 1716 0.992802 GCAACAAAAACGAAACGGCA 59.007 45.000 0.00 0.00 0.00 5.69
1698 1793 4.041567 TCCTCTTGATGGCACTAACAGAAA 59.958 41.667 0.00 0.00 0.00 2.52
1712 1807 6.043012 ACAAGCAGAGCTATATTCCTCTTGAT 59.957 38.462 15.37 1.99 38.25 2.57
1715 1810 5.221621 GGACAAGCAGAGCTATATTCCTCTT 60.222 44.000 0.00 0.00 38.25 2.85
1720 1815 4.039730 TGGAGGACAAGCAGAGCTATATTC 59.960 45.833 0.00 0.00 38.25 1.75
1721 1816 3.969976 TGGAGGACAAGCAGAGCTATATT 59.030 43.478 0.00 0.00 38.25 1.28
1736 1831 1.821136 CAAGCAGGGAAAATGGAGGAC 59.179 52.381 0.00 0.00 0.00 3.85
1738 1833 1.928868 ACAAGCAGGGAAAATGGAGG 58.071 50.000 0.00 0.00 0.00 4.30
1739 1834 2.892852 TGAACAAGCAGGGAAAATGGAG 59.107 45.455 0.00 0.00 0.00 3.86
1743 1838 6.855763 TGATTATGAACAAGCAGGGAAAAT 57.144 33.333 0.00 0.00 0.00 1.82
1857 1957 6.257411 CGAAGAGAAACATGTGCATAGAGATT 59.743 38.462 0.00 0.00 0.00 2.40
1858 1958 5.752472 CGAAGAGAAACATGTGCATAGAGAT 59.248 40.000 0.00 0.00 0.00 2.75
1859 1959 5.105063 CGAAGAGAAACATGTGCATAGAGA 58.895 41.667 0.00 0.00 0.00 3.10
1860 1960 4.867047 ACGAAGAGAAACATGTGCATAGAG 59.133 41.667 0.00 0.00 0.00 2.43
1861 1961 4.627035 CACGAAGAGAAACATGTGCATAGA 59.373 41.667 0.00 0.00 0.00 1.98
1862 1962 4.201753 CCACGAAGAGAAACATGTGCATAG 60.202 45.833 0.00 0.00 0.00 2.23
1863 1963 3.684305 CCACGAAGAGAAACATGTGCATA 59.316 43.478 0.00 0.00 0.00 3.14
1864 1964 2.485426 CCACGAAGAGAAACATGTGCAT 59.515 45.455 0.00 0.00 0.00 3.96
1865 1965 1.872952 CCACGAAGAGAAACATGTGCA 59.127 47.619 0.00 0.00 0.00 4.57
1866 1966 1.873591 ACCACGAAGAGAAACATGTGC 59.126 47.619 0.00 0.00 0.00 4.57
1867 1967 3.130633 TGACCACGAAGAGAAACATGTG 58.869 45.455 0.00 0.00 0.00 3.21
1868 1968 3.181465 ACTGACCACGAAGAGAAACATGT 60.181 43.478 0.00 0.00 0.00 3.21
1869 1969 3.393800 ACTGACCACGAAGAGAAACATG 58.606 45.455 0.00 0.00 0.00 3.21
1870 1970 3.069586 TGACTGACCACGAAGAGAAACAT 59.930 43.478 0.00 0.00 0.00 2.71
1871 1971 2.429250 TGACTGACCACGAAGAGAAACA 59.571 45.455 0.00 0.00 0.00 2.83
1872 1972 3.053455 CTGACTGACCACGAAGAGAAAC 58.947 50.000 0.00 0.00 0.00 2.78
1873 1973 2.035961 CCTGACTGACCACGAAGAGAAA 59.964 50.000 0.00 0.00 0.00 2.52
1874 1974 1.613925 CCTGACTGACCACGAAGAGAA 59.386 52.381 0.00 0.00 0.00 2.87
1875 1975 1.248486 CCTGACTGACCACGAAGAGA 58.752 55.000 0.00 0.00 0.00 3.10
1949 2054 4.618920 AACCTACCGTGTTCATTCTTCT 57.381 40.909 0.00 0.00 0.00 2.85
1961 2066 1.896122 GCACCTGCCTAACCTACCGT 61.896 60.000 0.00 0.00 34.31 4.83
2004 2114 0.969149 ACCAAGACTCACAGATCGCA 59.031 50.000 0.00 0.00 0.00 5.10
2013 2123 0.250597 TCTCGTCGGACCAAGACTCA 60.251 55.000 1.91 0.00 36.53 3.41
2051 2161 0.746659 GTTTGCTTGCTTGTGGGAGT 59.253 50.000 0.00 0.00 0.00 3.85
2087 2197 0.599204 GCCCGAAAGTCAGACGAACA 60.599 55.000 0.00 0.00 0.00 3.18
2110 2220 9.712305 CCACTTGGAGATAGATTACGAATTAAT 57.288 33.333 0.00 0.00 37.39 1.40
2118 2228 6.239176 CCTCTGTCCACTTGGAGATAGATTAC 60.239 46.154 8.84 0.00 46.49 1.89
2123 2233 3.636300 CTCCTCTGTCCACTTGGAGATAG 59.364 52.174 0.00 0.00 46.49 2.08
2124 2234 3.011821 ACTCCTCTGTCCACTTGGAGATA 59.988 47.826 13.42 0.00 46.49 1.98
2125 2235 2.225496 ACTCCTCTGTCCACTTGGAGAT 60.225 50.000 13.42 0.00 46.49 2.75
2126 2236 1.148027 ACTCCTCTGTCCACTTGGAGA 59.852 52.381 13.42 0.00 46.49 3.71
2128 2238 1.342074 CACTCCTCTGTCCACTTGGA 58.658 55.000 0.00 0.00 43.08 3.53
2164 2274 0.176910 TCGGCATTACATGGAGCGAA 59.823 50.000 0.00 0.00 0.00 4.70
2167 2277 0.308993 GCTTCGGCATTACATGGAGC 59.691 55.000 0.00 0.00 41.33 4.70
2179 2289 4.704833 TGAGGTGGCAGCTTCGGC 62.705 66.667 21.55 8.41 42.17 5.54
2184 2294 1.529244 GTTTGGTGAGGTGGCAGCT 60.529 57.895 20.74 20.74 37.20 4.24
2197 2307 3.891366 ACAAGAAGTTGATGAGGGTTTGG 59.109 43.478 0.00 0.00 37.10 3.28
2209 2320 7.168972 TGTTTGTTTTGTCTGAACAAGAAGTTG 59.831 33.333 3.12 0.00 45.72 3.16
2213 2324 5.923684 GGTGTTTGTTTTGTCTGAACAAGAA 59.076 36.000 3.12 0.00 45.72 2.52
2216 2327 4.039245 TGGGTGTTTGTTTTGTCTGAACAA 59.961 37.500 0.00 0.00 43.16 2.83
2218 2329 3.924073 GTGGGTGTTTGTTTTGTCTGAAC 59.076 43.478 0.00 0.00 0.00 3.18
2231 2342 2.750712 CGGATTTATTCGGTGGGTGTTT 59.249 45.455 0.00 0.00 0.00 2.83
2248 2359 2.167662 GTTGGGGTTTGACATTCGGAT 58.832 47.619 0.00 0.00 0.00 4.18
2252 2363 2.299013 GGAAGGTTGGGGTTTGACATTC 59.701 50.000 0.00 0.00 34.41 2.67
2269 2380 2.232452 ACTTGAGATGACACCGAGGAAG 59.768 50.000 0.00 0.00 0.00 3.46
2270 2381 2.248248 ACTTGAGATGACACCGAGGAA 58.752 47.619 0.00 0.00 0.00 3.36
2279 2395 9.897744 TTCAATCAATTGTAAACTTGAGATGAC 57.102 29.630 5.13 0.00 38.84 3.06
2289 2405 7.748683 TGCGTGTATCTTCAATCAATTGTAAAC 59.251 33.333 5.13 0.00 38.84 2.01
2320 2484 2.804421 TAGAAATTCACATGCGTGCG 57.196 45.000 5.64 0.00 43.28 5.34
2324 2488 4.451379 TGCGTATAGAAATTCACATGCG 57.549 40.909 11.51 11.51 0.00 4.73
2330 2494 7.466725 CGGGAATCTTTTGCGTATAGAAATTCA 60.467 37.037 0.00 0.00 0.00 2.57
2331 2495 6.851330 CGGGAATCTTTTGCGTATAGAAATTC 59.149 38.462 0.00 0.00 0.00 2.17
2332 2496 6.540914 TCGGGAATCTTTTGCGTATAGAAATT 59.459 34.615 0.00 0.00 0.00 1.82
2333 2497 6.053005 TCGGGAATCTTTTGCGTATAGAAAT 58.947 36.000 0.00 0.00 0.00 2.17
2335 2499 5.013568 TCGGGAATCTTTTGCGTATAGAA 57.986 39.130 0.00 0.00 0.00 2.10
2336 2500 4.617959 CTCGGGAATCTTTTGCGTATAGA 58.382 43.478 0.00 0.00 0.00 1.98
2337 2501 3.184581 GCTCGGGAATCTTTTGCGTATAG 59.815 47.826 0.00 0.00 0.00 1.31
2338 2502 3.128349 GCTCGGGAATCTTTTGCGTATA 58.872 45.455 0.00 0.00 0.00 1.47
2350 2518 3.644966 TCTGTAAAATGGCTCGGGAAT 57.355 42.857 0.00 0.00 0.00 3.01
2375 2543 9.448438 TGTAATGTAGTAGTACTCCGTTTCTAA 57.552 33.333 5.96 0.00 31.37 2.10
2376 2544 9.448438 TTGTAATGTAGTAGTACTCCGTTTCTA 57.552 33.333 5.96 0.00 31.37 2.10
2377 2545 7.928307 TGTAATGTAGTAGTACTCCGTTTCT 57.072 36.000 5.96 0.00 31.37 2.52
2378 2546 7.219726 GCTTGTAATGTAGTAGTACTCCGTTTC 59.780 40.741 5.96 2.02 31.37 2.78
2381 2549 5.067023 GGCTTGTAATGTAGTAGTACTCCGT 59.933 44.000 5.96 0.00 31.37 4.69
2382 2550 5.298777 AGGCTTGTAATGTAGTAGTACTCCG 59.701 44.000 5.96 0.00 31.37 4.63
2383 2551 6.712179 AGGCTTGTAATGTAGTAGTACTCC 57.288 41.667 5.96 0.00 31.37 3.85
2384 2552 7.545489 ACAAGGCTTGTAATGTAGTAGTACTC 58.455 38.462 30.31 0.00 43.27 2.59
2385 2553 7.477945 ACAAGGCTTGTAATGTAGTAGTACT 57.522 36.000 30.31 8.14 43.27 2.73
2387 2555 7.179694 AGGAACAAGGCTTGTAATGTAGTAGTA 59.820 37.037 31.34 0.00 44.59 1.82
2388 2556 6.013639 AGGAACAAGGCTTGTAATGTAGTAGT 60.014 38.462 31.34 13.04 44.59 2.73
2389 2557 6.313905 CAGGAACAAGGCTTGTAATGTAGTAG 59.686 42.308 31.34 11.83 44.59 2.57
2390 2558 6.014070 TCAGGAACAAGGCTTGTAATGTAGTA 60.014 38.462 31.34 12.26 44.59 1.82
2391 2559 5.003804 CAGGAACAAGGCTTGTAATGTAGT 58.996 41.667 31.34 15.27 44.59 2.73
2392 2560 5.245531 TCAGGAACAAGGCTTGTAATGTAG 58.754 41.667 31.34 18.82 44.59 2.74
2410 2580 2.242926 CTGAACACTCAGGTCTCAGGA 58.757 52.381 0.00 0.00 44.72 3.86
2411 2581 2.739885 CTGAACACTCAGGTCTCAGG 57.260 55.000 0.00 0.00 44.72 3.86
2430 2600 5.632244 TTCTTTTTAGGCCGGATACAAAC 57.368 39.130 5.05 0.00 0.00 2.93
2434 2604 8.127327 GTCTATTTTTCTTTTTAGGCCGGATAC 58.873 37.037 5.05 0.00 0.00 2.24
2438 2608 6.404403 GGAGTCTATTTTTCTTTTTAGGCCGG 60.404 42.308 0.00 0.00 0.00 6.13
2439 2609 6.374613 AGGAGTCTATTTTTCTTTTTAGGCCG 59.625 38.462 0.00 0.00 0.00 6.13
2450 2624 6.645827 GGCGATAGGTTAGGAGTCTATTTTTC 59.354 42.308 0.00 0.00 0.00 2.29
2454 2628 4.767928 CAGGCGATAGGTTAGGAGTCTATT 59.232 45.833 0.00 0.00 0.00 1.73
2455 2629 4.202588 ACAGGCGATAGGTTAGGAGTCTAT 60.203 45.833 0.00 0.00 0.00 1.98
2456 2630 3.137913 ACAGGCGATAGGTTAGGAGTCTA 59.862 47.826 0.00 0.00 0.00 2.59
2458 2632 2.293955 GACAGGCGATAGGTTAGGAGTC 59.706 54.545 0.00 0.00 0.00 3.36
2459 2633 2.308690 GACAGGCGATAGGTTAGGAGT 58.691 52.381 0.00 0.00 0.00 3.85
2460 2634 2.307768 TGACAGGCGATAGGTTAGGAG 58.692 52.381 0.00 0.00 0.00 3.69
2461 2635 2.447408 TGACAGGCGATAGGTTAGGA 57.553 50.000 0.00 0.00 0.00 2.94
2462 2636 3.555168 GGAATGACAGGCGATAGGTTAGG 60.555 52.174 0.00 0.00 0.00 2.69
2463 2637 3.069586 TGGAATGACAGGCGATAGGTTAG 59.930 47.826 0.00 0.00 0.00 2.34
2464 2638 3.035363 TGGAATGACAGGCGATAGGTTA 58.965 45.455 0.00 0.00 0.00 2.85
2465 2639 1.837439 TGGAATGACAGGCGATAGGTT 59.163 47.619 0.00 0.00 0.00 3.50
2466 2640 1.414181 CTGGAATGACAGGCGATAGGT 59.586 52.381 0.00 0.00 34.84 3.08
2467 2641 2.160822 CTGGAATGACAGGCGATAGG 57.839 55.000 0.00 0.00 34.84 2.57
2502 2676 0.037697 TTCGTGCTCACCTACGCATT 60.038 50.000 0.00 0.00 39.94 3.56
2505 2679 0.457853 TCATTCGTGCTCACCTACGC 60.458 55.000 0.00 0.00 39.94 4.42
2506 2680 1.990799 TTCATTCGTGCTCACCTACG 58.009 50.000 0.00 0.00 41.38 3.51
2507 2681 2.094417 GCTTTCATTCGTGCTCACCTAC 59.906 50.000 0.00 0.00 0.00 3.18
2508 2682 2.289382 TGCTTTCATTCGTGCTCACCTA 60.289 45.455 0.00 0.00 0.00 3.08
2509 2683 1.160137 GCTTTCATTCGTGCTCACCT 58.840 50.000 0.00 0.00 0.00 4.00
2510 2684 0.874390 TGCTTTCATTCGTGCTCACC 59.126 50.000 0.00 0.00 0.00 4.02
2511 2685 2.512885 CATGCTTTCATTCGTGCTCAC 58.487 47.619 0.00 0.00 0.00 3.51
2512 2686 1.469703 CCATGCTTTCATTCGTGCTCA 59.530 47.619 0.00 0.00 0.00 4.26
2513 2687 1.739466 TCCATGCTTTCATTCGTGCTC 59.261 47.619 0.00 0.00 0.00 4.26
2514 2688 1.741706 CTCCATGCTTTCATTCGTGCT 59.258 47.619 0.00 0.00 0.00 4.40
2515 2689 1.739466 TCTCCATGCTTTCATTCGTGC 59.261 47.619 0.00 0.00 0.00 5.34
2516 2690 3.181503 CCTTCTCCATGCTTTCATTCGTG 60.182 47.826 0.00 0.00 0.00 4.35
2517 2691 3.012518 CCTTCTCCATGCTTTCATTCGT 58.987 45.455 0.00 0.00 0.00 3.85
2518 2692 3.273434 TCCTTCTCCATGCTTTCATTCG 58.727 45.455 0.00 0.00 0.00 3.34
2519 2693 3.066481 GCTCCTTCTCCATGCTTTCATTC 59.934 47.826 0.00 0.00 0.00 2.67
2520 2694 3.022406 GCTCCTTCTCCATGCTTTCATT 58.978 45.455 0.00 0.00 0.00 2.57
2521 2695 2.652590 GCTCCTTCTCCATGCTTTCAT 58.347 47.619 0.00 0.00 0.00 2.57
2522 2696 1.676916 CGCTCCTTCTCCATGCTTTCA 60.677 52.381 0.00 0.00 0.00 2.69
2523 2697 1.012841 CGCTCCTTCTCCATGCTTTC 58.987 55.000 0.00 0.00 0.00 2.62
2524 2698 0.393537 CCGCTCCTTCTCCATGCTTT 60.394 55.000 0.00 0.00 0.00 3.51
2525 2699 1.222936 CCGCTCCTTCTCCATGCTT 59.777 57.895 0.00 0.00 0.00 3.91
2526 2700 2.739996 CCCGCTCCTTCTCCATGCT 61.740 63.158 0.00 0.00 0.00 3.79
2527 2701 2.203126 CCCGCTCCTTCTCCATGC 60.203 66.667 0.00 0.00 0.00 4.06
2528 2702 2.203126 GCCCGCTCCTTCTCCATG 60.203 66.667 0.00 0.00 0.00 3.66
2529 2703 2.262774 CTTGCCCGCTCCTTCTCCAT 62.263 60.000 0.00 0.00 0.00 3.41
2530 2704 2.927856 TTGCCCGCTCCTTCTCCA 60.928 61.111 0.00 0.00 0.00 3.86
2531 2705 2.124942 CTTGCCCGCTCCTTCTCC 60.125 66.667 0.00 0.00 0.00 3.71
2532 2706 2.821810 GCTTGCCCGCTCCTTCTC 60.822 66.667 0.00 0.00 0.00 2.87
2533 2707 4.416738 GGCTTGCCCGCTCCTTCT 62.417 66.667 0.00 0.00 0.00 2.85
2542 2716 3.168528 TAGGGATCCGGCTTGCCC 61.169 66.667 5.45 10.97 41.00 5.36
2543 2717 1.984288 AACTAGGGATCCGGCTTGCC 61.984 60.000 5.45 0.72 0.00 4.52
2544 2718 0.107165 AAACTAGGGATCCGGCTTGC 60.107 55.000 5.45 0.00 0.00 4.01
2545 2719 2.017049 CAAAACTAGGGATCCGGCTTG 58.983 52.381 5.45 1.83 0.00 4.01
2546 2720 1.633945 ACAAAACTAGGGATCCGGCTT 59.366 47.619 5.45 0.00 0.00 4.35
2547 2721 1.286248 ACAAAACTAGGGATCCGGCT 58.714 50.000 5.45 0.16 0.00 5.52
2548 2722 2.484947 CCTACAAAACTAGGGATCCGGC 60.485 54.545 5.45 0.00 30.95 6.13
2549 2723 2.770232 ACCTACAAAACTAGGGATCCGG 59.230 50.000 5.45 0.00 38.13 5.14
2550 2724 4.081309 TCAACCTACAAAACTAGGGATCCG 60.081 45.833 5.45 0.00 38.13 4.18
2551 2725 5.045797 ACTCAACCTACAAAACTAGGGATCC 60.046 44.000 1.92 1.92 38.13 3.36
2552 2726 6.051179 ACTCAACCTACAAAACTAGGGATC 57.949 41.667 0.00 0.00 38.13 3.36
2553 2727 6.449830 AACTCAACCTACAAAACTAGGGAT 57.550 37.500 0.00 0.00 38.13 3.85
2554 2728 5.899631 AACTCAACCTACAAAACTAGGGA 57.100 39.130 0.00 0.00 38.13 4.20
2555 2729 5.178809 CGAAACTCAACCTACAAAACTAGGG 59.821 44.000 0.00 0.00 38.13 3.53
2556 2730 5.178809 CCGAAACTCAACCTACAAAACTAGG 59.821 44.000 0.00 0.00 39.55 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.