Multiple sequence alignment - TraesCS7B01G320700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G320700 chr7B 100.000 3407 0 0 1 3407 571256921 571260327 0.000000e+00 6292.0
1 TraesCS7B01G320700 chr7A 96.041 2728 93 6 1 2724 611467098 611469814 0.000000e+00 4425.0
2 TraesCS7B01G320700 chr7A 91.944 720 46 7 1069 1781 700977473 700978187 0.000000e+00 998.0
3 TraesCS7B01G320700 chr7A 90.381 603 22 6 2776 3345 611470117 611470716 0.000000e+00 760.0
4 TraesCS7B01G320700 chr7A 90.034 291 17 8 2231 2510 700978182 700978471 1.930000e-97 366.0
5 TraesCS7B01G320700 chr7A 89.691 291 18 8 2231 2510 700941637 700941926 8.990000e-96 361.0
6 TraesCS7B01G320700 chr7A 95.370 216 10 0 1566 1781 700941427 700941642 9.050000e-91 344.0
7 TraesCS7B01G320700 chr7A 92.424 198 14 1 877 1074 700976397 700976593 7.200000e-72 281.0
8 TraesCS7B01G320700 chr7A 98.246 57 1 0 2719 2775 611469901 611469957 2.160000e-17 100.0
9 TraesCS7B01G320700 chr7A 90.323 62 6 0 3345 3406 690204429 690204368 7.840000e-12 82.4
10 TraesCS7B01G320700 chr7D 96.446 2279 68 8 449 2724 530925180 530927448 0.000000e+00 3747.0
11 TraesCS7B01G320700 chr7D 96.517 402 14 0 1 402 530924784 530925185 0.000000e+00 665.0
12 TraesCS7B01G320700 chr7D 90.103 485 34 4 1056 1540 611010910 611011380 4.830000e-173 617.0
13 TraesCS7B01G320700 chr7D 88.956 498 40 6 2167 2655 611011383 611011874 4.860000e-168 601.0
14 TraesCS7B01G320700 chr7D 94.186 172 6 2 850 1017 611008921 611009092 3.370000e-65 259.0
15 TraesCS7B01G320700 chr7D 91.351 185 14 1 2719 2901 611008072 611008256 5.640000e-63 252.0
16 TraesCS7B01G320700 chr7D 84.337 166 22 3 2760 2923 484398839 484399002 3.520000e-35 159.0
17 TraesCS7B01G320700 chr7D 98.246 57 1 0 2719 2775 530927539 530927595 2.160000e-17 100.0
18 TraesCS7B01G320700 chr7D 92.188 64 5 0 3344 3407 51830898 51830961 1.300000e-14 91.6
19 TraesCS7B01G320700 chr7D 93.478 46 3 0 3300 3345 530927879 530927924 6.100000e-08 69.4
20 TraesCS7B01G320700 chr1B 84.615 169 21 4 2764 2929 449710428 449710262 2.720000e-36 163.0
21 TraesCS7B01G320700 chr2B 83.125 160 23 3 2756 2912 451825962 451825804 3.540000e-30 143.0
22 TraesCS7B01G320700 chr4B 87.603 121 13 1 2755 2873 651512945 651513065 4.580000e-29 139.0
23 TraesCS7B01G320700 chr4B 80.405 148 29 0 2948 3095 546050821 546050674 2.780000e-21 113.0
24 TraesCS7B01G320700 chr4B 88.060 67 7 1 3340 3406 20305052 20305117 1.010000e-10 78.7
25 TraesCS7B01G320700 chr2A 82.530 166 22 5 2768 2929 1603067 1603229 4.580000e-29 139.0
26 TraesCS7B01G320700 chr2D 82.716 162 19 8 2756 2912 380415555 380415398 5.930000e-28 135.0
27 TraesCS7B01G320700 chr2D 91.803 61 5 0 3342 3402 630131591 630131531 6.060000e-13 86.1
28 TraesCS7B01G320700 chr2D 92.982 57 4 0 3346 3402 198728543 198728599 2.180000e-12 84.2
29 TraesCS7B01G320700 chr3B 84.800 125 17 1 2807 2929 204752901 204752777 1.280000e-24 124.0
30 TraesCS7B01G320700 chr5B 88.750 80 6 2 2756 2833 642723068 642722990 1.010000e-15 95.3
31 TraesCS7B01G320700 chr3A 95.000 60 3 0 3343 3402 12228195 12228136 1.010000e-15 95.3
32 TraesCS7B01G320700 chr3D 96.296 54 2 0 3353 3406 140625245 140625298 4.680000e-14 89.8
33 TraesCS7B01G320700 chr3D 100.000 29 0 0 2900 2928 512742244 512742272 2.000000e-03 54.7
34 TraesCS7B01G320700 chr5A 86.250 80 10 1 3323 3402 675973363 675973441 6.060000e-13 86.1
35 TraesCS7B01G320700 chr5D 89.231 65 6 1 3339 3402 369723593 369723657 2.820000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G320700 chr7B 571256921 571260327 3406 False 6292.000000 6292 100.000000 1 3407 1 chr7B.!!$F1 3406
1 TraesCS7B01G320700 chr7A 611467098 611470716 3618 False 1761.666667 4425 94.889333 1 3345 3 chr7A.!!$F1 3344
2 TraesCS7B01G320700 chr7A 700976397 700978471 2074 False 548.333333 998 91.467333 877 2510 3 chr7A.!!$F3 1633
3 TraesCS7B01G320700 chr7D 530924784 530927924 3140 False 1145.350000 3747 96.171750 1 3345 4 chr7D.!!$F3 3344
4 TraesCS7B01G320700 chr7D 611008072 611011874 3802 False 432.250000 617 91.149000 850 2901 4 chr7D.!!$F4 2051

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
63 64 2.202395 TTGCCTGCCCTCTTTGTGC 61.202 57.895 0.00 0.0 0.0 4.57 F
1128 3799 1.043116 TGGTGAGGAGGTGGATAGCG 61.043 60.000 0.00 0.0 0.0 4.26 F
1395 4073 0.527817 CGATTGACTACCGTGGCCTC 60.528 60.000 3.32 0.0 0.0 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1363 4041 0.738975 TCAATCGAGAGTCGGCGAAT 59.261 50.000 12.92 11.73 40.88 3.34 R
2191 4869 1.337167 GGGTTCAGCATTTTGTGAGGC 60.337 52.381 0.00 0.00 0.00 4.70 R
3243 6233 0.834612 AAACCGAGAACCAGTGGACA 59.165 50.000 18.40 0.00 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 2.202395 TTGCCTGCCCTCTTTGTGC 61.202 57.895 0.00 0.00 0.00 4.57
147 148 3.181422 TGAGGAGGTCTCACTGAAGGTTA 60.181 47.826 0.14 0.00 46.71 2.85
285 286 2.989422 AAGAAAGATTTTGCGGTCCG 57.011 45.000 6.99 6.99 0.00 4.79
293 294 4.717629 TTGCGGTCCGTGCTCTCG 62.718 66.667 13.94 0.00 0.00 4.04
340 341 2.622064 TCTCGATCGAGTGATGAGGA 57.378 50.000 36.68 18.12 42.49 3.71
801 802 9.107367 CTGATTCGAAAATCTTGTTCTTTACAC 57.893 33.333 0.00 0.00 41.63 2.90
907 910 5.824904 AGCAATCATCACAATTGGTAGTC 57.175 39.130 10.83 0.00 41.61 2.59
1128 3799 1.043116 TGGTGAGGAGGTGGATAGCG 61.043 60.000 0.00 0.00 0.00 4.26
1175 3846 6.073276 GGTGGGAAAAATTTATTTGACACAGC 60.073 38.462 0.00 9.04 33.85 4.40
1363 4041 3.754965 AGCTTGGTCTCACAGCATAAAA 58.245 40.909 0.00 0.00 30.77 1.52
1395 4073 0.527817 CGATTGACTACCGTGGCCTC 60.528 60.000 3.32 0.00 0.00 4.70
1485 4163 3.777522 CTGATCAAGTACCTCCCCTTTCT 59.222 47.826 0.00 0.00 0.00 2.52
1495 4173 3.142028 ACCTCCCCTTTCTGAATTTCCAA 59.858 43.478 0.00 0.00 0.00 3.53
1797 4475 3.196901 AGGAACTGTCATGCATAACCGTA 59.803 43.478 0.00 0.00 37.18 4.02
1821 4499 3.195610 ACGACAGCACCTCAATCAATCTA 59.804 43.478 0.00 0.00 0.00 1.98
1934 4612 0.597568 TTGGTTTCATCGCTTGGCAG 59.402 50.000 0.00 0.00 0.00 4.85
1998 4676 2.482336 TGGTCGTTTGATTGACATTCCG 59.518 45.455 0.00 0.00 36.83 4.30
2007 4685 3.058570 TGATTGACATTCCGTTTGGTTCG 60.059 43.478 0.00 0.00 36.30 3.95
2014 4692 1.227734 CCGTTTGGTTCGTGGTCCT 60.228 57.895 0.00 0.00 0.00 3.85
2066 4744 3.249091 CCTCTGATTTGTGTCTCTGTCG 58.751 50.000 0.00 0.00 0.00 4.35
2232 4910 0.180406 AACAAAGGCTCGTGGTCAGT 59.820 50.000 0.00 0.00 0.00 3.41
2319 5003 1.838112 CAGGAGCCATGCCAAAACTA 58.162 50.000 0.00 0.00 0.00 2.24
2390 5085 1.903877 CTCCCGACCTTGGCATCAGT 61.904 60.000 0.00 0.00 0.00 3.41
2532 5227 4.589908 CCCTACACCATATTTCCATAGGC 58.410 47.826 0.00 0.00 0.00 3.93
2901 5860 4.383661 GGTCAAAGTTGAATTTTGGGGTGT 60.384 41.667 12.27 0.00 39.21 4.16
2946 5929 0.037882 AGTCTGTGCATGTCGTGGAG 60.038 55.000 0.00 0.00 0.00 3.86
2988 5971 8.914328 TGTGCATCAATGTATAAAAGTTCATG 57.086 30.769 0.00 0.00 0.00 3.07
2992 5975 7.380602 GCATCAATGTATAAAAGTTCATGCTCC 59.619 37.037 0.00 0.00 0.00 4.70
2999 5982 6.874288 ATAAAAGTTCATGCTCCTATGCTC 57.126 37.500 0.00 0.00 0.00 4.26
3002 5985 2.959030 AGTTCATGCTCCTATGCTCGTA 59.041 45.455 0.00 0.00 0.00 3.43
3032 6015 4.473444 ACACTTGACCATCCAAACAAGAT 58.527 39.130 0.00 0.00 41.16 2.40
3045 6028 9.480053 CATCCAAACAAGATTTAGAATTGTTGT 57.520 29.630 3.55 0.00 44.18 3.32
3047 6030 9.528018 TCCAAACAAGATTTAGAATTGTTGTTC 57.472 29.630 10.82 0.00 44.18 3.18
3099 6082 3.244911 ACCTCCAATCACCAAAATCGACT 60.245 43.478 0.00 0.00 0.00 4.18
3108 6091 5.757886 TCACCAAAATCGACTGTGAATTTC 58.242 37.500 0.00 0.00 33.35 2.17
3147 6130 5.589855 TGAAAACAATGTTGAAGAGCTCAGA 59.410 36.000 17.77 0.00 34.81 3.27
3222 6205 5.377358 CACTGAGAAACTTTTGTATGCTCG 58.623 41.667 0.00 0.00 31.17 5.03
3236 6226 0.532573 TGCTCGGAAGACACCTCATC 59.467 55.000 0.00 0.00 35.39 2.92
3262 6252 0.834612 TGTCCACTGGTTCTCGGTTT 59.165 50.000 0.00 0.00 31.34 3.27
3272 6262 1.195674 GTTCTCGGTTTGAGCAGCTTC 59.804 52.381 0.00 0.00 44.86 3.86
3332 6322 2.017138 TTTGTGAGCGTTGTGTCAGA 57.983 45.000 0.00 0.00 0.00 3.27
3336 6326 1.457303 GTGAGCGTTGTGTCAGATGTC 59.543 52.381 0.00 0.00 0.00 3.06
3345 6335 6.472680 CGTTGTGTCAGATGTCATCTTTATG 58.527 40.000 12.88 3.21 37.58 1.90
3346 6336 6.456047 CGTTGTGTCAGATGTCATCTTTATGG 60.456 42.308 12.88 1.91 37.58 2.74
3347 6337 6.298441 TGTGTCAGATGTCATCTTTATGGA 57.702 37.500 12.88 4.31 37.58 3.41
3348 6338 6.892485 TGTGTCAGATGTCATCTTTATGGAT 58.108 36.000 12.88 0.00 37.58 3.41
3349 6339 6.764560 TGTGTCAGATGTCATCTTTATGGATG 59.235 38.462 12.88 0.71 43.01 3.51
3350 6340 6.765036 GTGTCAGATGTCATCTTTATGGATGT 59.235 38.462 12.88 0.00 42.45 3.06
3351 6341 6.764560 TGTCAGATGTCATCTTTATGGATGTG 59.235 38.462 12.88 0.00 42.45 3.21
3352 6342 6.765036 GTCAGATGTCATCTTTATGGATGTGT 59.235 38.462 12.88 0.00 42.45 3.72
3353 6343 6.988580 TCAGATGTCATCTTTATGGATGTGTC 59.011 38.462 12.88 0.00 42.45 3.67
3354 6344 6.990939 CAGATGTCATCTTTATGGATGTGTCT 59.009 38.462 12.88 0.00 42.45 3.41
3355 6345 8.146412 CAGATGTCATCTTTATGGATGTGTCTA 58.854 37.037 12.88 0.00 42.45 2.59
3356 6346 8.366401 AGATGTCATCTTTATGGATGTGTCTAG 58.634 37.037 9.68 0.00 42.45 2.43
3357 6347 6.820335 TGTCATCTTTATGGATGTGTCTAGG 58.180 40.000 0.00 0.00 42.45 3.02
3358 6348 6.384015 TGTCATCTTTATGGATGTGTCTAGGT 59.616 38.462 0.00 0.00 42.45 3.08
3359 6349 6.926272 GTCATCTTTATGGATGTGTCTAGGTC 59.074 42.308 0.00 0.00 42.45 3.85
3360 6350 6.841229 TCATCTTTATGGATGTGTCTAGGTCT 59.159 38.462 0.00 0.00 42.45 3.85
3361 6351 6.716934 TCTTTATGGATGTGTCTAGGTCTC 57.283 41.667 0.00 0.00 0.00 3.36
3362 6352 6.194967 TCTTTATGGATGTGTCTAGGTCTCA 58.805 40.000 0.00 0.00 0.00 3.27
3363 6353 6.667848 TCTTTATGGATGTGTCTAGGTCTCAA 59.332 38.462 0.00 0.00 0.00 3.02
3364 6354 7.345653 TCTTTATGGATGTGTCTAGGTCTCAAT 59.654 37.037 0.00 0.00 0.00 2.57
3365 6355 5.543507 ATGGATGTGTCTAGGTCTCAATC 57.456 43.478 0.00 0.00 0.00 2.67
3366 6356 3.381590 TGGATGTGTCTAGGTCTCAATCG 59.618 47.826 0.00 0.00 0.00 3.34
3367 6357 3.632604 GGATGTGTCTAGGTCTCAATCGA 59.367 47.826 0.00 0.00 0.00 3.59
3368 6358 4.498345 GGATGTGTCTAGGTCTCAATCGAC 60.498 50.000 0.00 0.00 0.00 4.20
3369 6359 3.687125 TGTGTCTAGGTCTCAATCGACT 58.313 45.455 0.00 0.00 34.38 4.18
3370 6360 3.440522 TGTGTCTAGGTCTCAATCGACTG 59.559 47.826 0.00 0.00 34.38 3.51
3371 6361 3.690139 GTGTCTAGGTCTCAATCGACTGA 59.310 47.826 0.00 0.00 34.38 3.41
3372 6362 3.942115 TGTCTAGGTCTCAATCGACTGAG 59.058 47.826 17.55 17.55 43.62 3.35
3380 6370 5.312120 TCTCAATCGACTGAGACTTAACC 57.688 43.478 21.83 0.00 45.45 2.85
3381 6371 4.765339 TCTCAATCGACTGAGACTTAACCA 59.235 41.667 21.83 0.00 45.45 3.67
3382 6372 5.243060 TCTCAATCGACTGAGACTTAACCAA 59.757 40.000 21.83 0.00 45.45 3.67
3383 6373 5.470368 TCAATCGACTGAGACTTAACCAAG 58.530 41.667 0.00 0.00 37.81 3.61
3384 6374 8.871851 TCTCAATCGACTGAGACTTAACCAAGT 61.872 40.741 21.83 0.00 45.45 3.16
3397 6387 6.289064 ACTTAACCAAGTCTAAGTCAAGTGG 58.711 40.000 0.00 0.00 41.25 4.00
3398 6388 4.772886 AACCAAGTCTAAGTCAAGTGGT 57.227 40.909 0.00 0.00 39.54 4.16
3399 6389 5.881923 AACCAAGTCTAAGTCAAGTGGTA 57.118 39.130 0.00 0.00 36.90 3.25
3400 6390 6.435292 AACCAAGTCTAAGTCAAGTGGTAT 57.565 37.500 0.00 0.00 36.90 2.73
3401 6391 7.549147 AACCAAGTCTAAGTCAAGTGGTATA 57.451 36.000 0.00 0.00 36.90 1.47
3402 6392 7.549147 ACCAAGTCTAAGTCAAGTGGTATAA 57.451 36.000 0.00 0.00 36.15 0.98
3403 6393 7.384477 ACCAAGTCTAAGTCAAGTGGTATAAC 58.616 38.462 0.00 0.00 36.15 1.89
3404 6394 7.015877 ACCAAGTCTAAGTCAAGTGGTATAACA 59.984 37.037 0.00 0.00 36.15 2.41
3405 6395 8.041323 CCAAGTCTAAGTCAAGTGGTATAACAT 58.959 37.037 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 1.975407 CAACAAGGCTGGCTCCCTG 60.975 63.158 3.48 1.68 31.73 4.45
147 148 5.254032 ACCCTCCAAAACCTATGAGAGAAAT 59.746 40.000 0.00 0.00 0.00 2.17
293 294 5.355630 GGGAGAGTCTTCCTTTCTTATTTGC 59.644 44.000 10.61 0.00 37.40 3.68
340 341 3.262660 TCTCATTGAGTTGATGAGCCACT 59.737 43.478 13.23 0.00 46.40 4.00
419 420 3.321968 TCAGCGATATTGTGATAGGCTGT 59.678 43.478 9.58 0.00 43.13 4.40
801 802 3.708563 TTTTCCAGAGCCAAAAACTCG 57.291 42.857 0.00 0.00 39.23 4.18
907 910 5.181811 TGCTATCTGATTTTGTGGTCAACAG 59.818 40.000 0.00 0.00 40.74 3.16
966 973 2.152016 GGGTTTTTCTCAAGTCCTCGG 58.848 52.381 0.00 0.00 0.00 4.63
1128 3799 6.868339 CACCATCAACCTTAACAAATCTTTCC 59.132 38.462 0.00 0.00 0.00 3.13
1219 3890 8.552083 TGACCATCATAGTTGATATATGTTGC 57.448 34.615 0.00 0.00 40.70 4.17
1363 4041 0.738975 TCAATCGAGAGTCGGCGAAT 59.261 50.000 12.92 11.73 40.88 3.34
1395 4073 4.794248 TGACACTGTCTTCACATTTTCG 57.206 40.909 10.54 0.00 33.15 3.46
1485 4163 3.511146 GCATTCTCAGGGTTGGAAATTCA 59.489 43.478 0.00 0.00 0.00 2.57
1495 4173 0.990374 AGAGCAAGCATTCTCAGGGT 59.010 50.000 0.00 0.00 0.00 4.34
1524 4202 6.743575 AGATAACCAATTTCCAACTTCTCG 57.256 37.500 0.00 0.00 0.00 4.04
1797 4475 0.969149 TGATTGAGGTGCTGTCGTCT 59.031 50.000 0.00 0.00 0.00 4.18
1821 4499 0.779997 AACCTCCCAACTCCTGCAAT 59.220 50.000 0.00 0.00 0.00 3.56
1998 4676 1.838568 GCGAGGACCACGAACCAAAC 61.839 60.000 15.98 0.00 0.00 2.93
2007 4685 3.775654 CAGGGAGGCGAGGACCAC 61.776 72.222 0.00 0.00 0.00 4.16
2014 4692 2.363018 CAGGAGACAGGGAGGCGA 60.363 66.667 0.00 0.00 0.00 5.54
2023 4701 3.055819 GTGATTAGTTCCTGCAGGAGACA 60.056 47.826 33.16 22.87 46.36 3.41
2066 4744 1.707427 AGGCCATCCAATCAGGTATCC 59.293 52.381 5.01 0.00 39.02 2.59
2096 4774 1.611673 CGATTTGAAGGCAGGTGAGGT 60.612 52.381 0.00 0.00 0.00 3.85
2191 4869 1.337167 GGGTTCAGCATTTTGTGAGGC 60.337 52.381 0.00 0.00 0.00 4.70
2232 4910 5.029807 TCAGGCATCGGAATATGTTGTTA 57.970 39.130 0.00 0.00 0.00 2.41
2319 5003 5.455392 CACAATCTGAAATTCGAGTGCTTT 58.545 37.500 12.40 0.00 0.00 3.51
2532 5227 5.355596 GTTCTCATCTCCACCTCAATACAG 58.644 45.833 0.00 0.00 0.00 2.74
2577 5273 3.724478 AGTAGATCCAGACAATGTGGGA 58.276 45.455 5.93 5.93 35.58 4.37
2582 5278 4.202060 ACAGCGTAGTAGATCCAGACAATG 60.202 45.833 0.00 0.00 0.00 2.82
2855 5814 6.326323 ACCAGAAATTAGACCAACCAAATGTT 59.674 34.615 0.00 0.00 37.80 2.71
2901 5860 3.669536 TCCAATGAATAAGACGCACACA 58.330 40.909 0.00 0.00 0.00 3.72
2946 5929 6.421501 TGATGCACATGTTTCAAGTTGAATTC 59.578 34.615 18.69 14.63 36.11 2.17
2988 5971 3.717707 TGAATTGTACGAGCATAGGAGC 58.282 45.455 0.00 0.00 0.00 4.70
2992 5975 6.090763 TCAAGTGTTGAATTGTACGAGCATAG 59.909 38.462 0.00 0.00 36.59 2.23
2999 5982 4.804608 TGGTCAAGTGTTGAATTGTACG 57.195 40.909 0.00 0.00 42.15 3.67
3002 5985 4.214310 TGGATGGTCAAGTGTTGAATTGT 58.786 39.130 0.00 0.00 42.15 2.71
3032 6015 9.965824 GAATTCAAGAGGAACAACAATTCTAAA 57.034 29.630 0.00 0.00 38.60 1.85
3064 6047 6.294731 GGTGATTGGAGGTTCATATATTTGGC 60.295 42.308 0.00 0.00 0.00 4.52
3099 6082 4.811024 GCTATCGAGTCATGGAAATTCACA 59.189 41.667 0.00 0.00 0.00 3.58
3108 6091 4.183865 TGTTTTCAGCTATCGAGTCATGG 58.816 43.478 0.00 0.00 0.00 3.66
3236 6226 3.134458 GAGAACCAGTGGACAAGACAAG 58.866 50.000 18.40 0.00 0.00 3.16
3243 6233 0.834612 AAACCGAGAACCAGTGGACA 59.165 50.000 18.40 0.00 0.00 4.02
3332 6322 7.071698 ACCTAGACACATCCATAAAGATGACAT 59.928 37.037 8.44 0.00 45.43 3.06
3345 6335 3.632604 TCGATTGAGACCTAGACACATCC 59.367 47.826 0.00 0.00 0.00 3.51
3346 6336 4.336993 AGTCGATTGAGACCTAGACACATC 59.663 45.833 0.00 0.00 41.83 3.06
3347 6337 4.097135 CAGTCGATTGAGACCTAGACACAT 59.903 45.833 0.86 0.00 41.83 3.21
3348 6338 3.440522 CAGTCGATTGAGACCTAGACACA 59.559 47.826 0.86 0.00 41.83 3.72
3349 6339 3.690139 TCAGTCGATTGAGACCTAGACAC 59.310 47.826 6.51 0.00 41.83 3.67
3350 6340 3.942115 CTCAGTCGATTGAGACCTAGACA 59.058 47.826 28.47 0.00 45.95 3.41
3351 6341 4.193090 TCTCAGTCGATTGAGACCTAGAC 58.807 47.826 30.21 0.00 46.42 2.59
3352 6342 4.489306 TCTCAGTCGATTGAGACCTAGA 57.511 45.455 30.21 12.67 46.42 2.43
3358 6348 8.871851 ACTTGGTTAAGTCTCAGTCGATTGAGA 61.872 40.741 30.21 30.21 43.53 3.27
3359 6349 5.060662 TGGTTAAGTCTCAGTCGATTGAG 57.939 43.478 27.00 27.00 44.74 3.02
3360 6350 5.010719 ACTTGGTTAAGTCTCAGTCGATTGA 59.989 40.000 10.44 10.44 43.53 2.57
3361 6351 5.230942 ACTTGGTTAAGTCTCAGTCGATTG 58.769 41.667 0.68 0.68 43.53 2.67
3362 6352 5.470047 ACTTGGTTAAGTCTCAGTCGATT 57.530 39.130 0.00 0.00 43.53 3.34
3374 6364 6.289064 ACCACTTGACTTAGACTTGGTTAAG 58.711 40.000 9.08 9.08 39.86 1.85
3375 6365 6.243216 ACCACTTGACTTAGACTTGGTTAA 57.757 37.500 0.00 0.00 31.72 2.01
3376 6366 5.881923 ACCACTTGACTTAGACTTGGTTA 57.118 39.130 0.00 0.00 31.72 2.85
3377 6367 4.772886 ACCACTTGACTTAGACTTGGTT 57.227 40.909 0.00 0.00 31.72 3.67
3378 6368 7.015877 TGTTATACCACTTGACTTAGACTTGGT 59.984 37.037 0.00 0.00 39.25 3.67
3379 6369 7.383687 TGTTATACCACTTGACTTAGACTTGG 58.616 38.462 0.00 0.00 0.00 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.