Multiple sequence alignment - TraesCS7B01G320600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G320600 chr7B 100.000 3281 0 0 1 3281 571255483 571258763 0.000000e+00 6059
1 TraesCS7B01G320600 chr7B 89.369 301 24 3 1 301 296360226 296359934 4.000000e-99 372
2 TraesCS7B01G320600 chr7B 91.146 192 14 3 523 714 589915953 589915765 1.170000e-64 257
3 TraesCS7B01G320600 chr7A 96.100 2564 83 8 722 3281 611466382 611468932 0.000000e+00 4165
4 TraesCS7B01G320600 chr7A 91.944 720 46 7 2507 3219 700977473 700978187 0.000000e+00 998
5 TraesCS7B01G320600 chr7A 95.370 216 10 0 3004 3219 700941427 700941642 8.720000e-91 344
6 TraesCS7B01G320600 chr7A 92.424 198 14 1 2315 2512 700976397 700976593 6.930000e-72 281
7 TraesCS7B01G320600 chr7D 96.850 1397 41 2 1887 3281 530925180 530926575 0.000000e+00 2333
8 TraesCS7B01G320600 chr7D 95.022 1125 49 5 722 1840 530924062 530925185 0.000000e+00 1760
9 TraesCS7B01G320600 chr7D 90.103 485 34 4 2494 2978 611010910 611011380 4.650000e-173 617
10 TraesCS7B01G320600 chr7D 81.342 477 46 12 1 453 503976666 503976209 6.740000e-92 348
11 TraesCS7B01G320600 chr7D 86.774 310 33 8 1 305 551813638 551813944 4.060000e-89 339
12 TraesCS7B01G320600 chr7D 86.928 306 32 8 1 301 551831388 551831690 1.460000e-88 337
13 TraesCS7B01G320600 chr7D 84.731 334 17 10 1 301 263882504 263882172 1.480000e-78 303
14 TraesCS7B01G320600 chr7D 94.186 172 6 2 2288 2455 611008921 611009092 3.250000e-65 259
15 TraesCS7B01G320600 chr4B 82.265 468 55 17 1 453 386200384 386200838 2.390000e-101 379
16 TraesCS7B01G320600 chr3B 81.646 474 58 18 4 453 706531429 706530961 1.860000e-97 366
17 TraesCS7B01G320600 chr3B 91.371 197 12 2 523 714 240267690 240267886 6.980000e-67 265
18 TraesCS7B01G320600 chr3D 88.088 319 19 11 1 301 253665066 253665383 8.650000e-96 361
19 TraesCS7B01G320600 chr3D 83.417 199 25 8 12 207 556116331 556116138 9.360000e-41 178
20 TraesCS7B01G320600 chr5A 84.756 328 20 16 1 301 141029307 141029631 5.320000e-78 302
21 TraesCS7B01G320600 chr1D 84.663 326 23 14 1 301 63683159 63682836 1.910000e-77 300
22 TraesCS7B01G320600 chr3A 84.615 312 33 12 1 301 26110937 26111244 2.480000e-76 296
23 TraesCS7B01G320600 chr5B 93.085 188 11 2 523 710 463194586 463194771 1.160000e-69 274
24 TraesCS7B01G320600 chr5B 92.632 190 10 3 523 710 668441118 668441305 1.500000e-68 270
25 TraesCS7B01G320600 chr5B 91.753 194 13 3 523 714 609684472 609684280 1.940000e-67 267
26 TraesCS7B01G320600 chr5B 82.215 298 20 15 184 453 470198309 470198601 3.290000e-55 226
27 TraesCS7B01G320600 chr2B 91.623 191 14 2 521 710 577254022 577253833 2.510000e-66 263
28 TraesCS7B01G320600 chr5D 91.623 191 12 3 523 710 288133467 288133278 9.030000e-66 261
29 TraesCS7B01G320600 chr1A 91.579 190 15 1 523 711 580149012 580149201 9.030000e-66 261
30 TraesCS7B01G320600 chr4A 90.000 200 15 4 519 714 741985202 741985004 1.510000e-63 254
31 TraesCS7B01G320600 chr6B 81.433 307 37 14 1 301 519849618 519849910 1.970000e-57 233
32 TraesCS7B01G320600 chr4D 93.038 158 11 0 1 158 474447665 474447822 7.080000e-57 231


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G320600 chr7B 571255483 571258763 3280 False 6059.0 6059 100.0000 1 3281 1 chr7B.!!$F1 3280
1 TraesCS7B01G320600 chr7A 611466382 611468932 2550 False 4165.0 4165 96.1000 722 3281 1 chr7A.!!$F1 2559
2 TraesCS7B01G320600 chr7A 700976397 700978187 1790 False 639.5 998 92.1840 2315 3219 2 chr7A.!!$F3 904
3 TraesCS7B01G320600 chr7D 530924062 530926575 2513 False 2046.5 2333 95.9360 722 3281 2 chr7D.!!$F3 2559
4 TraesCS7B01G320600 chr7D 611008921 611011380 2459 False 438.0 617 92.1445 2288 2978 2 chr7D.!!$F4 690

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
626 627 0.035439 GCGTGAAAATCAGAGGGGGA 60.035 55.0 0.0 0.0 0.0 4.81 F
743 744 0.970427 AATCGCATTTCCACCCCACC 60.970 55.0 0.0 0.0 0.0 4.61 F
1452 1460 0.251354 ATGCGATGGTCTGTTCTGCT 59.749 50.0 0.0 0.0 0.0 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1427 1435 0.251354 ACAGACCATCGCATCAAGCT 59.749 50.000 0.00 0.00 42.61 3.74 R
1599 1607 1.423921 GTCTTCCCTGACCCTCCAAAA 59.576 52.381 0.00 0.00 0.00 2.44 R
2801 5486 0.738975 TCAATCGAGAGTCGGCGAAT 59.261 50.000 12.92 11.73 40.88 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.911143 GGGGGCAGACATGTCGAT 59.089 61.111 19.85 0.53 34.09 3.59
18 19 1.524621 GGGGGCAGACATGTCGATG 60.525 63.158 19.85 14.58 35.49 3.84
19 20 1.522092 GGGGCAGACATGTCGATGA 59.478 57.895 19.85 0.00 33.36 2.92
20 21 0.107456 GGGGCAGACATGTCGATGAT 59.893 55.000 19.85 0.00 33.36 2.45
21 22 1.224075 GGGCAGACATGTCGATGATG 58.776 55.000 19.85 13.17 33.36 3.07
22 23 1.224075 GGCAGACATGTCGATGATGG 58.776 55.000 19.85 6.39 33.36 3.51
23 24 1.202568 GGCAGACATGTCGATGATGGA 60.203 52.381 19.85 0.00 33.36 3.41
24 25 1.863454 GCAGACATGTCGATGATGGAC 59.137 52.381 19.85 0.25 33.36 4.02
25 26 2.122564 CAGACATGTCGATGATGGACG 58.877 52.381 19.85 0.00 37.22 4.79
26 27 2.024414 AGACATGTCGATGATGGACGA 58.976 47.619 19.85 0.00 37.22 4.20
27 28 2.033927 AGACATGTCGATGATGGACGAG 59.966 50.000 19.85 1.05 39.16 4.18
28 29 1.135046 CATGTCGATGATGGACGAGC 58.865 55.000 3.19 0.00 39.16 5.03
29 30 0.746659 ATGTCGATGATGGACGAGCA 59.253 50.000 3.19 0.00 39.16 4.26
30 31 0.101219 TGTCGATGATGGACGAGCAG 59.899 55.000 3.19 0.00 39.16 4.24
31 32 0.596083 GTCGATGATGGACGAGCAGG 60.596 60.000 0.00 0.00 39.16 4.85
32 33 1.037579 TCGATGATGGACGAGCAGGT 61.038 55.000 0.00 0.00 34.49 4.00
33 34 0.596083 CGATGATGGACGAGCAGGTC 60.596 60.000 0.00 0.00 36.18 3.85
34 35 0.461548 GATGATGGACGAGCAGGTCA 59.538 55.000 9.05 0.00 38.70 4.02
35 36 0.904649 ATGATGGACGAGCAGGTCAA 59.095 50.000 9.05 0.00 38.70 3.18
36 37 0.247460 TGATGGACGAGCAGGTCAAG 59.753 55.000 9.05 0.00 38.70 3.02
37 38 0.460987 GATGGACGAGCAGGTCAAGG 60.461 60.000 9.05 0.00 38.70 3.61
38 39 2.435059 GGACGAGCAGGTCAAGGC 60.435 66.667 9.05 0.00 38.70 4.35
39 40 2.811317 GACGAGCAGGTCAAGGCG 60.811 66.667 0.00 0.00 36.91 5.52
40 41 3.575351 GACGAGCAGGTCAAGGCGT 62.575 63.158 0.00 0.00 36.91 5.68
41 42 3.114616 CGAGCAGGTCAAGGCGTG 61.115 66.667 0.00 0.00 34.54 5.34
42 43 2.743928 GAGCAGGTCAAGGCGTGG 60.744 66.667 0.00 0.00 34.54 4.94
43 44 3.537206 GAGCAGGTCAAGGCGTGGT 62.537 63.158 0.00 0.00 37.62 4.16
44 45 2.167398 GAGCAGGTCAAGGCGTGGTA 62.167 60.000 0.00 0.00 35.52 3.25
45 46 2.033194 GCAGGTCAAGGCGTGGTAC 61.033 63.158 0.00 0.00 0.00 3.34
46 47 1.375523 CAGGTCAAGGCGTGGTACC 60.376 63.158 4.43 4.43 0.00 3.34
47 48 1.535687 AGGTCAAGGCGTGGTACCT 60.536 57.895 14.36 7.79 40.02 3.08
48 49 1.375523 GGTCAAGGCGTGGTACCTG 60.376 63.158 14.36 6.91 37.67 4.00
49 50 1.669440 GTCAAGGCGTGGTACCTGA 59.331 57.895 14.36 4.20 37.67 3.86
50 51 0.669625 GTCAAGGCGTGGTACCTGAC 60.670 60.000 14.36 13.20 37.67 3.51
51 52 1.736645 CAAGGCGTGGTACCTGACG 60.737 63.158 17.95 17.95 37.67 4.35
52 53 1.904865 AAGGCGTGGTACCTGACGA 60.905 57.895 24.49 0.00 37.67 4.20
53 54 1.466025 AAGGCGTGGTACCTGACGAA 61.466 55.000 24.49 0.00 37.67 3.85
54 55 1.445582 GGCGTGGTACCTGACGAAG 60.446 63.158 24.49 3.63 37.81 3.79
55 56 2.092882 GCGTGGTACCTGACGAAGC 61.093 63.158 24.49 9.72 37.81 3.86
56 57 1.800315 CGTGGTACCTGACGAAGCG 60.800 63.158 17.50 4.20 37.81 4.68
57 58 2.092882 GTGGTACCTGACGAAGCGC 61.093 63.158 14.36 0.00 0.00 5.92
59 60 2.879462 GTACCTGACGAAGCGCGG 60.879 66.667 8.83 0.00 46.49 6.46
67 68 4.880537 CGAAGCGCGGCCTCATCT 62.881 66.667 8.83 0.00 36.03 2.90
68 69 2.512515 GAAGCGCGGCCTCATCTT 60.513 61.111 8.83 0.00 0.00 2.40
69 70 2.817423 GAAGCGCGGCCTCATCTTG 61.817 63.158 8.83 0.00 0.00 3.02
70 71 3.315142 AAGCGCGGCCTCATCTTGA 62.315 57.895 8.83 0.00 0.00 3.02
71 72 2.803155 AAGCGCGGCCTCATCTTGAA 62.803 55.000 8.83 0.00 0.00 2.69
72 73 3.093278 CGCGGCCTCATCTTGAAC 58.907 61.111 0.00 0.00 0.00 3.18
73 74 2.464459 CGCGGCCTCATCTTGAACC 61.464 63.158 0.00 0.00 0.00 3.62
74 75 1.377202 GCGGCCTCATCTTGAACCA 60.377 57.895 0.00 0.00 0.00 3.67
75 76 1.372087 GCGGCCTCATCTTGAACCAG 61.372 60.000 0.00 0.00 0.00 4.00
76 77 0.250234 CGGCCTCATCTTGAACCAGA 59.750 55.000 0.00 0.00 0.00 3.86
77 78 1.134280 CGGCCTCATCTTGAACCAGAT 60.134 52.381 0.00 0.00 33.44 2.90
79 80 1.674962 GCCTCATCTTGAACCAGATGC 59.325 52.381 9.93 0.00 46.88 3.91
80 81 2.295885 CCTCATCTTGAACCAGATGCC 58.704 52.381 9.93 0.00 46.88 4.40
81 82 2.092538 CCTCATCTTGAACCAGATGCCT 60.093 50.000 9.93 0.00 46.88 4.75
82 83 3.618351 CTCATCTTGAACCAGATGCCTT 58.382 45.455 9.93 0.00 46.88 4.35
83 84 3.614092 TCATCTTGAACCAGATGCCTTC 58.386 45.455 9.93 0.00 46.88 3.46
84 85 3.009363 TCATCTTGAACCAGATGCCTTCA 59.991 43.478 9.93 0.00 46.88 3.02
85 86 3.507162 TCTTGAACCAGATGCCTTCAA 57.493 42.857 0.00 0.00 33.80 2.69
86 87 3.149196 TCTTGAACCAGATGCCTTCAAC 58.851 45.455 0.00 0.00 31.99 3.18
87 88 1.909700 TGAACCAGATGCCTTCAACC 58.090 50.000 0.00 0.00 0.00 3.77
88 89 1.144708 TGAACCAGATGCCTTCAACCA 59.855 47.619 0.00 0.00 0.00 3.67
89 90 1.541588 GAACCAGATGCCTTCAACCAC 59.458 52.381 0.00 0.00 0.00 4.16
90 91 0.251341 ACCAGATGCCTTCAACCACC 60.251 55.000 0.00 0.00 0.00 4.61
91 92 1.308069 CCAGATGCCTTCAACCACCG 61.308 60.000 0.00 0.00 0.00 4.94
92 93 1.675641 AGATGCCTTCAACCACCGC 60.676 57.895 0.00 0.00 0.00 5.68
93 94 3.039202 GATGCCTTCAACCACCGCG 62.039 63.158 0.00 0.00 0.00 6.46
97 98 2.047655 CTTCAACCACCGCGCCTA 60.048 61.111 0.00 0.00 0.00 3.93
98 99 2.357760 TTCAACCACCGCGCCTAC 60.358 61.111 0.00 0.00 0.00 3.18
99 100 4.728102 TCAACCACCGCGCCTACG 62.728 66.667 0.00 0.00 44.07 3.51
111 112 4.910585 CCTACGCCCATGCCGACC 62.911 72.222 10.40 0.00 0.00 4.79
112 113 4.910585 CTACGCCCATGCCGACCC 62.911 72.222 10.40 0.00 0.00 4.46
117 118 4.358841 CCCATGCCGACCCCAACA 62.359 66.667 0.00 0.00 0.00 3.33
118 119 3.061848 CCATGCCGACCCCAACAC 61.062 66.667 0.00 0.00 0.00 3.32
119 120 3.061848 CATGCCGACCCCAACACC 61.062 66.667 0.00 0.00 0.00 4.16
120 121 4.715523 ATGCCGACCCCAACACCG 62.716 66.667 0.00 0.00 0.00 4.94
141 142 4.161295 CCCAGCCCGAGCGATGAA 62.161 66.667 0.00 0.00 46.67 2.57
142 143 2.587194 CCAGCCCGAGCGATGAAG 60.587 66.667 0.00 0.00 46.67 3.02
143 144 3.267860 CAGCCCGAGCGATGAAGC 61.268 66.667 0.00 0.00 46.67 3.86
144 145 4.537433 AGCCCGAGCGATGAAGCC 62.537 66.667 0.00 0.00 46.67 4.35
145 146 4.838152 GCCCGAGCGATGAAGCCA 62.838 66.667 0.00 0.00 38.01 4.75
146 147 2.892425 CCCGAGCGATGAAGCCAC 60.892 66.667 0.00 0.00 38.01 5.01
147 148 3.257561 CCGAGCGATGAAGCCACG 61.258 66.667 0.00 0.00 38.01 4.94
152 153 3.554692 CGATGAAGCCACGCCGAC 61.555 66.667 0.00 0.00 0.00 4.79
180 181 4.704833 GCCAGCCCGAGCACAGAA 62.705 66.667 0.00 0.00 43.56 3.02
181 182 2.435586 CCAGCCCGAGCACAGAAG 60.436 66.667 0.00 0.00 43.56 2.85
182 183 3.123620 CAGCCCGAGCACAGAAGC 61.124 66.667 0.00 0.00 43.56 3.86
183 184 4.400961 AGCCCGAGCACAGAAGCC 62.401 66.667 0.00 0.00 43.56 4.35
184 185 4.704833 GCCCGAGCACAGAAGCCA 62.705 66.667 0.00 0.00 39.53 4.75
185 186 2.743928 CCCGAGCACAGAAGCCAC 60.744 66.667 0.00 0.00 34.23 5.01
186 187 3.114616 CCGAGCACAGAAGCCACG 61.115 66.667 0.00 0.00 35.62 4.94
187 188 3.782244 CGAGCACAGAAGCCACGC 61.782 66.667 0.00 0.00 34.23 5.34
188 189 3.426568 GAGCACAGAAGCCACGCC 61.427 66.667 0.00 0.00 34.23 5.68
191 192 3.414700 CACAGAAGCCACGCCGAC 61.415 66.667 0.00 0.00 0.00 4.79
226 227 4.065281 CGGAGGAGCCCGTCGTTT 62.065 66.667 0.00 0.00 44.23 3.60
227 228 2.434359 GGAGGAGCCCGTCGTTTG 60.434 66.667 0.00 0.00 0.00 2.93
228 229 2.654877 GAGGAGCCCGTCGTTTGA 59.345 61.111 0.00 0.00 0.00 2.69
229 230 1.218316 GAGGAGCCCGTCGTTTGAT 59.782 57.895 0.00 0.00 0.00 2.57
230 231 1.079127 AGGAGCCCGTCGTTTGATG 60.079 57.895 0.00 0.00 0.00 3.07
231 232 2.750888 GGAGCCCGTCGTTTGATGC 61.751 63.158 0.00 0.00 0.00 3.91
232 233 2.031919 AGCCCGTCGTTTGATGCA 59.968 55.556 0.00 0.00 0.00 3.96
233 234 1.369091 GAGCCCGTCGTTTGATGCAT 61.369 55.000 0.00 0.00 0.00 3.96
234 235 0.960364 AGCCCGTCGTTTGATGCATT 60.960 50.000 0.00 0.00 0.00 3.56
235 236 0.523335 GCCCGTCGTTTGATGCATTC 60.523 55.000 0.00 0.00 0.00 2.67
236 237 0.098728 CCCGTCGTTTGATGCATTCC 59.901 55.000 0.00 0.00 0.00 3.01
237 238 1.086696 CCGTCGTTTGATGCATTCCT 58.913 50.000 0.00 0.00 0.00 3.36
238 239 1.468520 CCGTCGTTTGATGCATTCCTT 59.531 47.619 0.00 0.00 0.00 3.36
239 240 2.095263 CCGTCGTTTGATGCATTCCTTT 60.095 45.455 0.00 0.00 0.00 3.11
240 241 2.910482 CGTCGTTTGATGCATTCCTTTG 59.090 45.455 0.00 0.00 0.00 2.77
241 242 2.663119 GTCGTTTGATGCATTCCTTTGC 59.337 45.455 0.00 0.00 43.07 3.68
242 243 1.994779 CGTTTGATGCATTCCTTTGCC 59.005 47.619 0.00 0.00 42.06 4.52
243 244 2.353011 CGTTTGATGCATTCCTTTGCCT 60.353 45.455 0.00 0.00 42.06 4.75
244 245 3.119531 CGTTTGATGCATTCCTTTGCCTA 60.120 43.478 0.00 0.00 42.06 3.93
245 246 4.176271 GTTTGATGCATTCCTTTGCCTAC 58.824 43.478 0.00 0.00 42.06 3.18
246 247 2.016318 TGATGCATTCCTTTGCCTACG 58.984 47.619 0.00 0.00 42.06 3.51
247 248 0.740737 ATGCATTCCTTTGCCTACGC 59.259 50.000 0.00 0.00 42.06 4.42
248 249 1.062525 GCATTCCTTTGCCTACGCG 59.937 57.895 3.53 3.53 38.08 6.01
249 250 1.644786 GCATTCCTTTGCCTACGCGT 61.645 55.000 19.17 19.17 38.08 6.01
250 251 0.373716 CATTCCTTTGCCTACGCGTC 59.626 55.000 18.63 1.04 38.08 5.19
251 252 0.743345 ATTCCTTTGCCTACGCGTCC 60.743 55.000 18.63 6.24 38.08 4.79
252 253 1.823169 TTCCTTTGCCTACGCGTCCT 61.823 55.000 18.63 0.00 38.08 3.85
253 254 1.375523 CCTTTGCCTACGCGTCCTT 60.376 57.895 18.63 0.00 38.08 3.36
254 255 1.359459 CCTTTGCCTACGCGTCCTTC 61.359 60.000 18.63 4.20 38.08 3.46
255 256 1.683790 CTTTGCCTACGCGTCCTTCG 61.684 60.000 18.63 0.11 43.12 3.79
256 257 2.424705 TTTGCCTACGCGTCCTTCGT 62.425 55.000 18.63 0.00 43.20 3.85
257 258 2.126189 GCCTACGCGTCCTTCGTT 60.126 61.111 18.63 0.00 40.89 3.85
258 259 1.735559 GCCTACGCGTCCTTCGTTT 60.736 57.895 18.63 0.00 40.89 3.60
259 260 1.287041 GCCTACGCGTCCTTCGTTTT 61.287 55.000 18.63 0.00 40.89 2.43
260 261 0.437295 CCTACGCGTCCTTCGTTTTG 59.563 55.000 18.63 0.00 40.89 2.44
261 262 1.411394 CTACGCGTCCTTCGTTTTGA 58.589 50.000 18.63 0.00 40.89 2.69
262 263 1.788308 CTACGCGTCCTTCGTTTTGAA 59.212 47.619 18.63 0.00 40.89 2.69
263 264 0.302589 ACGCGTCCTTCGTTTTGAAC 59.697 50.000 5.58 0.00 42.13 3.18
286 287 3.377434 CGAACTTTCGTGTGTGTTTGA 57.623 42.857 3.13 0.00 45.09 2.69
287 288 3.935450 CGAACTTTCGTGTGTGTTTGAT 58.065 40.909 3.13 0.00 45.09 2.57
288 289 3.960002 CGAACTTTCGTGTGTGTTTGATC 59.040 43.478 3.13 0.00 45.09 2.92
289 290 3.585748 ACTTTCGTGTGTGTTTGATCG 57.414 42.857 0.00 0.00 0.00 3.69
290 291 2.286184 ACTTTCGTGTGTGTTTGATCGC 60.286 45.455 0.00 0.00 0.00 4.58
291 292 0.584396 TTCGTGTGTGTTTGATCGCC 59.416 50.000 0.00 0.00 0.00 5.54
292 293 1.154672 CGTGTGTGTTTGATCGCCG 60.155 57.895 0.00 0.00 0.00 6.46
293 294 1.553195 CGTGTGTGTTTGATCGCCGA 61.553 55.000 0.00 0.00 0.00 5.54
294 295 0.584396 GTGTGTGTTTGATCGCCGAA 59.416 50.000 0.00 0.00 0.00 4.30
295 296 0.584396 TGTGTGTTTGATCGCCGAAC 59.416 50.000 0.00 0.00 39.19 3.95
296 297 0.865769 GTGTGTTTGATCGCCGAACT 59.134 50.000 0.00 0.00 39.42 3.01
297 298 1.263217 GTGTGTTTGATCGCCGAACTT 59.737 47.619 0.00 0.00 39.42 2.66
298 299 1.262950 TGTGTTTGATCGCCGAACTTG 59.737 47.619 0.00 0.00 39.42 3.16
299 300 1.263217 GTGTTTGATCGCCGAACTTGT 59.737 47.619 0.00 0.00 39.42 3.16
300 301 1.262950 TGTTTGATCGCCGAACTTGTG 59.737 47.619 0.00 0.00 39.42 3.33
301 302 0.237235 TTTGATCGCCGAACTTGTGC 59.763 50.000 0.00 0.00 0.00 4.57
302 303 1.573829 TTGATCGCCGAACTTGTGCC 61.574 55.000 0.00 0.00 0.00 5.01
303 304 2.746277 ATCGCCGAACTTGTGCCC 60.746 61.111 0.00 0.00 0.00 5.36
304 305 3.254024 ATCGCCGAACTTGTGCCCT 62.254 57.895 0.00 0.00 0.00 5.19
305 306 2.748058 ATCGCCGAACTTGTGCCCTT 62.748 55.000 0.00 0.00 0.00 3.95
306 307 2.551912 CGCCGAACTTGTGCCCTTT 61.552 57.895 0.00 0.00 0.00 3.11
307 308 1.739667 GCCGAACTTGTGCCCTTTT 59.260 52.632 0.00 0.00 0.00 2.27
308 309 0.104120 GCCGAACTTGTGCCCTTTTT 59.896 50.000 0.00 0.00 0.00 1.94
325 326 3.594603 TTTTTGGCAACGGAAAAGACA 57.405 38.095 0.00 0.00 42.51 3.41
326 327 3.594603 TTTTGGCAACGGAAAAGACAA 57.405 38.095 0.00 0.00 42.51 3.18
327 328 2.861462 TTGGCAACGGAAAAGACAAG 57.139 45.000 0.00 0.00 42.51 3.16
328 329 1.757682 TGGCAACGGAAAAGACAAGT 58.242 45.000 0.00 0.00 42.51 3.16
329 330 2.096248 TGGCAACGGAAAAGACAAGTT 58.904 42.857 0.00 0.00 42.51 2.66
330 331 2.494073 TGGCAACGGAAAAGACAAGTTT 59.506 40.909 0.00 0.00 42.51 2.66
331 332 2.857748 GGCAACGGAAAAGACAAGTTTG 59.142 45.455 0.00 0.00 0.00 2.93
332 333 3.428316 GGCAACGGAAAAGACAAGTTTGA 60.428 43.478 0.00 0.00 0.00 2.69
333 334 4.170256 GCAACGGAAAAGACAAGTTTGAA 58.830 39.130 0.00 0.00 0.00 2.69
334 335 4.803613 GCAACGGAAAAGACAAGTTTGAAT 59.196 37.500 0.00 0.00 0.00 2.57
335 336 5.290885 GCAACGGAAAAGACAAGTTTGAATT 59.709 36.000 0.00 0.00 0.00 2.17
336 337 6.183360 GCAACGGAAAAGACAAGTTTGAATTT 60.183 34.615 0.00 0.00 0.00 1.82
337 338 7.009723 GCAACGGAAAAGACAAGTTTGAATTTA 59.990 33.333 0.00 0.00 0.00 1.40
338 339 9.030301 CAACGGAAAAGACAAGTTTGAATTTAT 57.970 29.630 0.00 0.00 0.00 1.40
339 340 8.574196 ACGGAAAAGACAAGTTTGAATTTATG 57.426 30.769 0.00 0.00 0.00 1.90
340 341 7.169140 ACGGAAAAGACAAGTTTGAATTTATGC 59.831 33.333 0.00 0.00 0.00 3.14
341 342 7.501515 GGAAAAGACAAGTTTGAATTTATGCG 58.498 34.615 0.00 0.00 0.00 4.73
342 343 6.452244 AAAGACAAGTTTGAATTTATGCGC 57.548 33.333 0.00 0.00 0.00 6.09
343 344 4.158384 AGACAAGTTTGAATTTATGCGCG 58.842 39.130 0.00 0.00 0.00 6.86
344 345 3.896122 ACAAGTTTGAATTTATGCGCGT 58.104 36.364 8.43 7.55 0.00 6.01
345 346 3.911964 ACAAGTTTGAATTTATGCGCGTC 59.088 39.130 4.79 0.00 0.00 5.19
346 347 4.158384 CAAGTTTGAATTTATGCGCGTCT 58.842 39.130 4.79 0.00 0.00 4.18
347 348 4.419522 AGTTTGAATTTATGCGCGTCTT 57.580 36.364 4.79 0.00 0.00 3.01
348 349 4.158384 AGTTTGAATTTATGCGCGTCTTG 58.842 39.130 4.79 0.00 0.00 3.02
349 350 4.083537 AGTTTGAATTTATGCGCGTCTTGA 60.084 37.500 4.79 0.00 0.00 3.02
350 351 3.656651 TGAATTTATGCGCGTCTTGAG 57.343 42.857 4.79 0.00 0.00 3.02
351 352 2.223021 TGAATTTATGCGCGTCTTGAGC 60.223 45.455 4.79 0.00 44.57 4.26
352 353 0.657840 ATTTATGCGCGTCTTGAGCC 59.342 50.000 4.79 0.00 43.55 4.70
353 354 0.672091 TTTATGCGCGTCTTGAGCCA 60.672 50.000 4.79 0.00 43.55 4.75
354 355 0.672091 TTATGCGCGTCTTGAGCCAA 60.672 50.000 4.79 0.00 43.55 4.52
355 356 0.672091 TATGCGCGTCTTGAGCCAAA 60.672 50.000 4.79 0.00 43.55 3.28
356 357 1.514678 ATGCGCGTCTTGAGCCAAAA 61.515 50.000 8.43 0.00 43.55 2.44
357 358 1.725973 GCGCGTCTTGAGCCAAAAC 60.726 57.895 8.43 0.00 37.43 2.43
358 359 1.082104 CGCGTCTTGAGCCAAAACC 60.082 57.895 0.00 0.00 0.00 3.27
359 360 1.507141 CGCGTCTTGAGCCAAAACCT 61.507 55.000 0.00 0.00 0.00 3.50
360 361 0.040067 GCGTCTTGAGCCAAAACCTG 60.040 55.000 0.00 0.00 0.00 4.00
362 363 0.961753 GTCTTGAGCCAAAACCTGGG 59.038 55.000 0.00 0.00 46.54 4.45
363 364 0.850100 TCTTGAGCCAAAACCTGGGA 59.150 50.000 0.00 0.00 46.54 4.37
364 365 1.202927 TCTTGAGCCAAAACCTGGGAG 60.203 52.381 0.00 0.00 46.54 4.30
365 366 0.827507 TTGAGCCAAAACCTGGGAGC 60.828 55.000 0.00 0.00 46.54 4.70
366 367 2.282462 AGCCAAAACCTGGGAGCG 60.282 61.111 0.00 0.00 46.54 5.03
367 368 4.056125 GCCAAAACCTGGGAGCGC 62.056 66.667 0.00 0.00 46.54 5.92
368 369 3.737172 CCAAAACCTGGGAGCGCG 61.737 66.667 0.00 0.00 42.17 6.86
369 370 3.737172 CAAAACCTGGGAGCGCGG 61.737 66.667 8.83 0.00 0.00 6.46
370 371 4.265056 AAAACCTGGGAGCGCGGT 62.265 61.111 12.23 12.23 0.00 5.68
371 372 3.785122 AAAACCTGGGAGCGCGGTT 62.785 57.895 14.00 10.42 42.52 4.44
378 379 4.699522 GGAGCGCGGTTGGGAACT 62.700 66.667 14.00 0.00 0.00 3.01
379 380 3.423154 GAGCGCGGTTGGGAACTG 61.423 66.667 14.00 0.00 40.80 3.16
382 383 2.046314 CGCGGTTGGGAACTGGAT 60.046 61.111 0.00 0.00 38.23 3.41
383 384 2.106683 CGCGGTTGGGAACTGGATC 61.107 63.158 0.00 0.00 38.23 3.36
384 385 1.002624 GCGGTTGGGAACTGGATCA 60.003 57.895 0.00 0.00 38.23 2.92
385 386 1.305930 GCGGTTGGGAACTGGATCAC 61.306 60.000 0.00 0.00 38.23 3.06
386 387 0.324943 CGGTTGGGAACTGGATCACT 59.675 55.000 0.00 0.00 34.07 3.41
387 388 1.271379 CGGTTGGGAACTGGATCACTT 60.271 52.381 0.00 0.00 34.07 3.16
388 389 2.162681 GGTTGGGAACTGGATCACTTG 58.837 52.381 0.00 0.00 0.00 3.16
389 390 1.541588 GTTGGGAACTGGATCACTTGC 59.458 52.381 0.00 0.00 0.00 4.01
390 391 0.770499 TGGGAACTGGATCACTTGCA 59.230 50.000 0.00 0.00 0.00 4.08
394 395 3.915575 CTGGATCACTTGCAGGGC 58.084 61.111 0.00 0.00 39.94 5.19
395 396 2.046023 TGGATCACTTGCAGGGCG 60.046 61.111 0.00 0.00 0.00 6.13
396 397 2.268920 GGATCACTTGCAGGGCGA 59.731 61.111 0.00 0.00 0.00 5.54
397 398 1.377202 GGATCACTTGCAGGGCGAA 60.377 57.895 0.00 0.00 0.00 4.70
398 399 0.960364 GGATCACTTGCAGGGCGAAA 60.960 55.000 0.00 0.00 0.00 3.46
399 400 0.881118 GATCACTTGCAGGGCGAAAA 59.119 50.000 0.00 0.00 0.00 2.29
400 401 1.269448 GATCACTTGCAGGGCGAAAAA 59.731 47.619 0.00 0.00 0.00 1.94
401 402 0.383949 TCACTTGCAGGGCGAAAAAC 59.616 50.000 0.00 0.00 0.00 2.43
402 403 0.597377 CACTTGCAGGGCGAAAAACC 60.597 55.000 0.00 0.00 0.00 3.27
403 404 1.371635 CTTGCAGGGCGAAAAACCG 60.372 57.895 0.00 0.00 0.00 4.44
412 413 4.413800 GAAAAACCGCCGGCGCAT 62.414 61.111 42.39 29.42 38.24 4.73
413 414 3.041627 GAAAAACCGCCGGCGCATA 62.042 57.895 42.39 0.00 38.24 3.14
414 415 2.331019 GAAAAACCGCCGGCGCATAT 62.331 55.000 42.39 25.76 38.24 1.78
415 416 2.606155 AAAAACCGCCGGCGCATATG 62.606 55.000 42.39 29.77 38.24 1.78
425 426 3.320884 GCGCATATGCCAAAACGAA 57.679 47.368 21.77 0.00 37.91 3.85
426 427 1.623359 GCGCATATGCCAAAACGAAA 58.377 45.000 21.77 0.00 37.91 3.46
427 428 2.192624 GCGCATATGCCAAAACGAAAT 58.807 42.857 21.77 0.00 37.91 2.17
428 429 2.216263 GCGCATATGCCAAAACGAAATC 59.784 45.455 21.77 0.00 37.91 2.17
429 430 3.433709 CGCATATGCCAAAACGAAATCA 58.566 40.909 21.77 0.00 37.91 2.57
430 431 3.240401 CGCATATGCCAAAACGAAATCAC 59.760 43.478 21.77 0.00 37.91 3.06
431 432 3.551485 GCATATGCCAAAACGAAATCACC 59.449 43.478 17.26 0.00 34.31 4.02
432 433 2.346099 ATGCCAAAACGAAATCACCG 57.654 45.000 0.00 0.00 0.00 4.94
433 434 0.312416 TGCCAAAACGAAATCACCGG 59.688 50.000 0.00 0.00 0.00 5.28
434 435 0.594110 GCCAAAACGAAATCACCGGA 59.406 50.000 9.46 0.00 0.00 5.14
435 436 1.201414 GCCAAAACGAAATCACCGGAT 59.799 47.619 9.46 0.00 34.43 4.18
436 437 2.862512 CCAAAACGAAATCACCGGATG 58.137 47.619 9.46 2.48 32.92 3.51
437 438 2.250188 CAAAACGAAATCACCGGATGC 58.750 47.619 9.46 0.00 32.92 3.91
438 439 0.446222 AAACGAAATCACCGGATGCG 59.554 50.000 9.46 0.00 37.82 4.73
439 440 1.977594 AACGAAATCACCGGATGCGC 61.978 55.000 9.46 0.00 36.29 6.09
440 441 2.173669 CGAAATCACCGGATGCGCT 61.174 57.895 9.46 0.00 32.92 5.92
441 442 1.353103 GAAATCACCGGATGCGCTG 59.647 57.895 9.46 0.00 32.92 5.18
442 443 1.369091 GAAATCACCGGATGCGCTGT 61.369 55.000 9.46 0.00 32.92 4.40
443 444 1.647545 AAATCACCGGATGCGCTGTG 61.648 55.000 9.46 5.32 32.92 3.66
444 445 4.758251 TCACCGGATGCGCTGTGG 62.758 66.667 9.46 8.02 0.00 4.17
456 457 3.697747 CTGTGGGGCCGAACCGTA 61.698 66.667 0.00 0.00 40.62 4.02
457 458 3.240011 TGTGGGGCCGAACCGTAA 61.240 61.111 0.00 0.00 40.62 3.18
458 459 2.435410 GTGGGGCCGAACCGTAAG 60.435 66.667 0.00 0.00 40.62 2.34
459 460 2.604079 TGGGGCCGAACCGTAAGA 60.604 61.111 0.00 0.00 40.62 2.10
460 461 2.186125 GGGGCCGAACCGTAAGAG 59.814 66.667 0.00 0.00 40.62 2.85
461 462 2.353610 GGGGCCGAACCGTAAGAGA 61.354 63.158 0.00 0.00 40.62 3.10
462 463 1.683418 GGGGCCGAACCGTAAGAGAT 61.683 60.000 0.00 0.00 40.62 2.75
463 464 0.249363 GGGCCGAACCGTAAGAGATC 60.249 60.000 0.00 0.00 40.62 2.75
464 465 0.594284 GGCCGAACCGTAAGAGATCG 60.594 60.000 0.00 0.00 43.02 3.69
465 466 1.207377 GCCGAACCGTAAGAGATCGC 61.207 60.000 0.00 0.00 43.02 4.58
466 467 0.594284 CCGAACCGTAAGAGATCGCC 60.594 60.000 0.00 0.00 43.02 5.54
467 468 0.381089 CGAACCGTAAGAGATCGCCT 59.619 55.000 0.00 0.00 43.02 5.52
468 469 1.600957 CGAACCGTAAGAGATCGCCTA 59.399 52.381 0.00 0.00 43.02 3.93
469 470 2.225963 CGAACCGTAAGAGATCGCCTAT 59.774 50.000 0.00 0.00 43.02 2.57
470 471 3.566523 GAACCGTAAGAGATCGCCTATG 58.433 50.000 0.00 0.00 43.02 2.23
471 472 2.860009 ACCGTAAGAGATCGCCTATGA 58.140 47.619 0.00 0.00 43.02 2.15
472 473 3.422796 ACCGTAAGAGATCGCCTATGAT 58.577 45.455 0.00 0.00 43.02 2.45
473 474 3.440872 ACCGTAAGAGATCGCCTATGATC 59.559 47.826 0.00 0.00 44.13 2.92
477 478 4.079090 GATCGCCTATGATCGCCG 57.921 61.111 0.00 0.00 35.80 6.46
478 479 1.506718 GATCGCCTATGATCGCCGA 59.493 57.895 0.00 0.00 35.80 5.54
479 480 0.109272 GATCGCCTATGATCGCCGAA 60.109 55.000 0.00 0.00 35.80 4.30
480 481 0.388649 ATCGCCTATGATCGCCGAAC 60.389 55.000 0.00 0.00 0.00 3.95
481 482 1.007271 CGCCTATGATCGCCGAACT 60.007 57.895 0.00 0.00 0.00 3.01
482 483 0.597637 CGCCTATGATCGCCGAACTT 60.598 55.000 0.00 0.00 0.00 2.66
483 484 0.861837 GCCTATGATCGCCGAACTTG 59.138 55.000 0.00 0.00 0.00 3.16
484 485 1.806623 GCCTATGATCGCCGAACTTGT 60.807 52.381 0.00 0.00 0.00 3.16
485 486 1.860950 CCTATGATCGCCGAACTTGTG 59.139 52.381 0.00 0.00 0.00 3.33
486 487 1.258982 CTATGATCGCCGAACTTGTGC 59.741 52.381 0.00 0.00 0.00 4.57
487 488 1.369091 ATGATCGCCGAACTTGTGCC 61.369 55.000 0.00 0.00 0.00 5.01
488 489 2.746277 ATCGCCGAACTTGTGCCC 60.746 61.111 0.00 0.00 0.00 5.36
489 490 3.254024 ATCGCCGAACTTGTGCCCT 62.254 57.895 0.00 0.00 0.00 5.19
490 491 2.748058 ATCGCCGAACTTGTGCCCTT 62.748 55.000 0.00 0.00 0.00 3.95
491 492 2.551912 CGCCGAACTTGTGCCCTTT 61.552 57.895 0.00 0.00 0.00 3.11
492 493 1.739667 GCCGAACTTGTGCCCTTTT 59.260 52.632 0.00 0.00 0.00 2.27
493 494 0.104120 GCCGAACTTGTGCCCTTTTT 59.896 50.000 0.00 0.00 0.00 1.94
511 512 3.388345 TTTTGCCACCGGTAAATTTCC 57.612 42.857 6.87 0.00 37.16 3.13
512 513 2.296073 TTGCCACCGGTAAATTTCCT 57.704 45.000 6.87 0.00 0.00 3.36
513 514 2.296073 TGCCACCGGTAAATTTCCTT 57.704 45.000 6.87 0.00 0.00 3.36
514 515 2.599677 TGCCACCGGTAAATTTCCTTT 58.400 42.857 6.87 0.00 0.00 3.11
515 516 2.966516 TGCCACCGGTAAATTTCCTTTT 59.033 40.909 6.87 0.00 0.00 2.27
516 517 3.388350 TGCCACCGGTAAATTTCCTTTTT 59.612 39.130 6.87 0.00 0.00 1.94
517 518 3.991773 GCCACCGGTAAATTTCCTTTTTC 59.008 43.478 6.87 0.00 0.00 2.29
518 519 4.231439 CCACCGGTAAATTTCCTTTTTCG 58.769 43.478 6.87 0.00 0.00 3.46
519 520 3.671459 CACCGGTAAATTTCCTTTTTCGC 59.329 43.478 6.87 0.00 0.00 4.70
520 521 3.318557 ACCGGTAAATTTCCTTTTTCGCA 59.681 39.130 4.49 0.00 0.00 5.10
521 522 3.671459 CCGGTAAATTTCCTTTTTCGCAC 59.329 43.478 0.00 0.00 0.00 5.34
522 523 3.359580 CGGTAAATTTCCTTTTTCGCACG 59.640 43.478 0.00 0.00 0.00 5.34
523 524 4.538917 GGTAAATTTCCTTTTTCGCACGA 58.461 39.130 0.00 0.00 0.00 4.35
524 525 4.615541 GGTAAATTTCCTTTTTCGCACGAG 59.384 41.667 0.00 0.00 0.00 4.18
525 526 3.982576 AATTTCCTTTTTCGCACGAGT 57.017 38.095 0.00 0.00 0.00 4.18
526 527 5.427036 AAATTTCCTTTTTCGCACGAGTA 57.573 34.783 0.00 0.00 0.00 2.59
527 528 5.427036 AATTTCCTTTTTCGCACGAGTAA 57.573 34.783 0.00 0.00 0.00 2.24
528 529 5.622770 ATTTCCTTTTTCGCACGAGTAAT 57.377 34.783 0.00 0.00 0.00 1.89
529 530 4.398549 TTCCTTTTTCGCACGAGTAATG 57.601 40.909 0.00 0.00 0.00 1.90
530 531 2.158841 TCCTTTTTCGCACGAGTAATGC 59.841 45.455 0.00 0.00 39.81 3.56
531 532 2.159627 CCTTTTTCGCACGAGTAATGCT 59.840 45.455 0.00 0.00 41.10 3.79
532 533 3.369756 CCTTTTTCGCACGAGTAATGCTA 59.630 43.478 0.00 0.00 41.10 3.49
533 534 3.984018 TTTTCGCACGAGTAATGCTAC 57.016 42.857 0.00 0.00 41.10 3.58
534 535 2.640346 TTCGCACGAGTAATGCTACA 57.360 45.000 0.00 0.00 41.10 2.74
535 536 2.863401 TCGCACGAGTAATGCTACAT 57.137 45.000 0.00 0.00 41.10 2.29
536 537 2.459934 TCGCACGAGTAATGCTACATG 58.540 47.619 0.00 0.00 41.10 3.21
537 538 2.159296 TCGCACGAGTAATGCTACATGT 60.159 45.455 2.69 2.69 41.10 3.21
538 539 3.065648 TCGCACGAGTAATGCTACATGTA 59.934 43.478 5.25 5.25 41.10 2.29
539 540 3.179795 CGCACGAGTAATGCTACATGTAC 59.820 47.826 0.08 0.16 41.10 2.90
540 541 4.109766 GCACGAGTAATGCTACATGTACA 58.890 43.478 0.08 0.00 40.08 2.90
541 542 4.565166 GCACGAGTAATGCTACATGTACAA 59.435 41.667 0.08 0.00 40.08 2.41
542 543 5.062934 GCACGAGTAATGCTACATGTACAAA 59.937 40.000 0.08 0.00 40.08 2.83
543 544 6.466812 CACGAGTAATGCTACATGTACAAAC 58.533 40.000 0.08 8.29 0.00 2.93
544 545 5.287752 ACGAGTAATGCTACATGTACAAACG 59.712 40.000 0.08 9.96 0.00 3.60
545 546 5.513849 CGAGTAATGCTACATGTACAAACGA 59.486 40.000 0.08 0.00 0.00 3.85
546 547 6.291112 CGAGTAATGCTACATGTACAAACGAG 60.291 42.308 0.08 0.00 0.00 4.18
547 548 6.395629 AGTAATGCTACATGTACAAACGAGT 58.604 36.000 0.08 0.00 0.00 4.18
548 549 6.872020 AGTAATGCTACATGTACAAACGAGTT 59.128 34.615 0.08 0.00 0.00 3.01
549 550 8.030692 AGTAATGCTACATGTACAAACGAGTTA 58.969 33.333 0.08 0.00 0.00 2.24
550 551 7.843490 AATGCTACATGTACAAACGAGTTAT 57.157 32.000 0.08 0.00 0.00 1.89
551 552 8.936070 AATGCTACATGTACAAACGAGTTATA 57.064 30.769 0.08 0.00 0.00 0.98
552 553 8.936070 ATGCTACATGTACAAACGAGTTATAA 57.064 30.769 0.08 0.00 0.00 0.98
553 554 8.402326 TGCTACATGTACAAACGAGTTATAAG 57.598 34.615 0.08 0.00 0.00 1.73
554 555 7.490079 TGCTACATGTACAAACGAGTTATAAGG 59.510 37.037 0.08 0.00 0.00 2.69
555 556 7.490402 GCTACATGTACAAACGAGTTATAAGGT 59.510 37.037 0.08 0.00 0.00 3.50
556 557 9.362539 CTACATGTACAAACGAGTTATAAGGTT 57.637 33.333 0.08 0.00 0.00 3.50
557 558 8.611654 ACATGTACAAACGAGTTATAAGGTTT 57.388 30.769 0.00 4.30 33.19 3.27
558 559 9.059260 ACATGTACAAACGAGTTATAAGGTTTT 57.941 29.630 0.00 3.52 30.73 2.43
561 562 9.539825 TGTACAAACGAGTTATAAGGTTTTACA 57.460 29.630 0.00 15.87 30.73 2.41
585 586 9.883142 ACAAAAAGAGTTAATTTGATTGGTCAA 57.117 25.926 5.68 0.00 42.41 3.18
597 598 7.870509 TTTGATTGGTCAATAGATGAGAAGG 57.129 36.000 0.00 0.00 43.49 3.46
598 599 5.371526 TGATTGGTCAATAGATGAGAAGGC 58.628 41.667 0.00 0.00 39.19 4.35
599 600 3.459232 TGGTCAATAGATGAGAAGGCG 57.541 47.619 0.00 0.00 39.19 5.52
600 601 2.103094 TGGTCAATAGATGAGAAGGCGG 59.897 50.000 0.00 0.00 39.19 6.13
601 602 2.139118 GTCAATAGATGAGAAGGCGGC 58.861 52.381 0.00 0.00 39.19 6.53
602 603 1.070758 TCAATAGATGAGAAGGCGGCC 59.929 52.381 12.11 12.11 33.04 6.13
603 604 0.398318 AATAGATGAGAAGGCGGCCC 59.602 55.000 17.02 0.38 0.00 5.80
604 605 0.764369 ATAGATGAGAAGGCGGCCCA 60.764 55.000 17.02 6.79 0.00 5.36
605 606 0.980754 TAGATGAGAAGGCGGCCCAA 60.981 55.000 17.02 0.00 0.00 4.12
606 607 2.044946 ATGAGAAGGCGGCCCAAC 60.045 61.111 17.02 7.50 0.00 3.77
607 608 3.976701 ATGAGAAGGCGGCCCAACG 62.977 63.158 17.02 0.00 0.00 4.10
615 616 3.955101 CGGCCCAACGCGTGAAAA 61.955 61.111 14.98 0.00 38.94 2.29
616 617 2.648454 GGCCCAACGCGTGAAAAT 59.352 55.556 14.98 0.00 38.94 1.82
617 618 1.443702 GGCCCAACGCGTGAAAATC 60.444 57.895 14.98 0.00 38.94 2.17
618 619 1.284408 GCCCAACGCGTGAAAATCA 59.716 52.632 14.98 0.00 0.00 2.57
619 620 0.729140 GCCCAACGCGTGAAAATCAG 60.729 55.000 14.98 0.00 0.00 2.90
620 621 0.871722 CCCAACGCGTGAAAATCAGA 59.128 50.000 14.98 0.00 0.00 3.27
621 622 1.135972 CCCAACGCGTGAAAATCAGAG 60.136 52.381 14.98 0.00 0.00 3.35
622 623 1.135972 CCAACGCGTGAAAATCAGAGG 60.136 52.381 14.98 0.00 0.00 3.69
623 624 1.135972 CAACGCGTGAAAATCAGAGGG 60.136 52.381 14.98 0.00 0.00 4.30
624 625 0.673644 ACGCGTGAAAATCAGAGGGG 60.674 55.000 12.93 0.00 0.00 4.79
625 626 1.369091 CGCGTGAAAATCAGAGGGGG 61.369 60.000 0.00 0.00 0.00 5.40
626 627 0.035439 GCGTGAAAATCAGAGGGGGA 60.035 55.000 0.00 0.00 0.00 4.81
627 628 1.739067 CGTGAAAATCAGAGGGGGAC 58.261 55.000 0.00 0.00 0.00 4.46
628 629 1.003118 CGTGAAAATCAGAGGGGGACA 59.997 52.381 0.00 0.00 0.00 4.02
629 630 2.552155 CGTGAAAATCAGAGGGGGACAA 60.552 50.000 0.00 0.00 0.00 3.18
630 631 3.084786 GTGAAAATCAGAGGGGGACAAG 58.915 50.000 0.00 0.00 0.00 3.16
631 632 2.716424 TGAAAATCAGAGGGGGACAAGT 59.284 45.455 0.00 0.00 0.00 3.16
632 633 3.140144 TGAAAATCAGAGGGGGACAAGTT 59.860 43.478 0.00 0.00 0.00 2.66
633 634 3.903530 AAATCAGAGGGGGACAAGTTT 57.096 42.857 0.00 0.00 0.00 2.66
634 635 2.887151 ATCAGAGGGGGACAAGTTTG 57.113 50.000 0.00 0.00 0.00 2.93
635 636 1.518367 TCAGAGGGGGACAAGTTTGT 58.482 50.000 0.00 0.00 45.65 2.83
636 637 1.142870 TCAGAGGGGGACAAGTTTGTG 59.857 52.381 1.62 0.00 42.43 3.33
637 638 1.142870 CAGAGGGGGACAAGTTTGTGA 59.857 52.381 1.62 0.00 42.43 3.58
638 639 2.065799 AGAGGGGGACAAGTTTGTGAT 58.934 47.619 1.62 0.00 42.43 3.06
639 640 2.447047 AGAGGGGGACAAGTTTGTGATT 59.553 45.455 1.62 0.00 42.43 2.57
640 641 2.558359 GAGGGGGACAAGTTTGTGATTG 59.442 50.000 1.62 0.00 42.43 2.67
641 642 1.618343 GGGGGACAAGTTTGTGATTGG 59.382 52.381 1.62 0.00 42.43 3.16
642 643 2.316108 GGGGACAAGTTTGTGATTGGT 58.684 47.619 1.62 0.00 42.43 3.67
643 644 2.698274 GGGGACAAGTTTGTGATTGGTT 59.302 45.455 1.62 0.00 42.43 3.67
644 645 3.892588 GGGGACAAGTTTGTGATTGGTTA 59.107 43.478 1.62 0.00 42.43 2.85
645 646 4.022329 GGGGACAAGTTTGTGATTGGTTAG 60.022 45.833 1.62 0.00 42.43 2.34
646 647 4.583073 GGGACAAGTTTGTGATTGGTTAGT 59.417 41.667 1.62 0.00 42.43 2.24
647 648 5.766174 GGGACAAGTTTGTGATTGGTTAGTA 59.234 40.000 1.62 0.00 42.43 1.82
648 649 6.072673 GGGACAAGTTTGTGATTGGTTAGTAG 60.073 42.308 1.62 0.00 42.43 2.57
649 650 6.708949 GGACAAGTTTGTGATTGGTTAGTAGA 59.291 38.462 1.62 0.00 42.43 2.59
650 651 7.390718 GGACAAGTTTGTGATTGGTTAGTAGAT 59.609 37.037 1.62 0.00 42.43 1.98
651 652 8.099364 ACAAGTTTGTGATTGGTTAGTAGATG 57.901 34.615 0.00 0.00 40.49 2.90
652 653 7.936847 ACAAGTTTGTGATTGGTTAGTAGATGA 59.063 33.333 0.00 0.00 40.49 2.92
653 654 8.783093 CAAGTTTGTGATTGGTTAGTAGATGAA 58.217 33.333 0.00 0.00 0.00 2.57
654 655 8.918202 AGTTTGTGATTGGTTAGTAGATGAAA 57.082 30.769 0.00 0.00 0.00 2.69
655 656 9.349713 AGTTTGTGATTGGTTAGTAGATGAAAA 57.650 29.630 0.00 0.00 0.00 2.29
656 657 9.959749 GTTTGTGATTGGTTAGTAGATGAAAAA 57.040 29.630 0.00 0.00 0.00 1.94
678 679 6.422776 AAAATCCTAGTCAGCGTGTAATTG 57.577 37.500 0.00 0.00 0.00 2.32
679 680 2.888594 TCCTAGTCAGCGTGTAATTGC 58.111 47.619 0.00 0.00 0.00 3.56
680 681 2.232696 TCCTAGTCAGCGTGTAATTGCA 59.767 45.455 0.00 0.00 0.00 4.08
681 682 3.118775 TCCTAGTCAGCGTGTAATTGCAT 60.119 43.478 0.00 0.00 0.00 3.96
682 683 3.001634 CCTAGTCAGCGTGTAATTGCATG 59.998 47.826 11.04 11.04 0.00 4.06
683 684 2.426522 AGTCAGCGTGTAATTGCATGT 58.573 42.857 15.87 2.18 0.00 3.21
684 685 3.595173 AGTCAGCGTGTAATTGCATGTA 58.405 40.909 15.87 1.55 0.00 2.29
685 686 4.000325 AGTCAGCGTGTAATTGCATGTAA 59.000 39.130 15.87 0.00 0.00 2.41
686 687 4.088648 GTCAGCGTGTAATTGCATGTAAC 58.911 43.478 15.87 8.84 0.00 2.50
687 688 4.000325 TCAGCGTGTAATTGCATGTAACT 59.000 39.130 15.87 3.62 0.00 2.24
688 689 4.092821 TCAGCGTGTAATTGCATGTAACTC 59.907 41.667 15.87 0.84 0.00 3.01
689 690 4.093408 CAGCGTGTAATTGCATGTAACTCT 59.907 41.667 15.87 2.97 0.00 3.24
690 691 4.695455 AGCGTGTAATTGCATGTAACTCTT 59.305 37.500 15.87 0.00 0.00 2.85
691 692 5.181245 AGCGTGTAATTGCATGTAACTCTTT 59.819 36.000 15.87 0.00 0.00 2.52
692 693 5.283717 GCGTGTAATTGCATGTAACTCTTTG 59.716 40.000 15.87 0.00 0.00 2.77
693 694 6.370593 CGTGTAATTGCATGTAACTCTTTGT 58.629 36.000 7.52 0.00 0.00 2.83
694 695 7.514805 CGTGTAATTGCATGTAACTCTTTGTA 58.485 34.615 7.52 0.00 0.00 2.41
695 696 8.175069 CGTGTAATTGCATGTAACTCTTTGTAT 58.825 33.333 7.52 0.00 0.00 2.29
696 697 9.277565 GTGTAATTGCATGTAACTCTTTGTATG 57.722 33.333 0.00 0.00 0.00 2.39
697 698 9.008965 TGTAATTGCATGTAACTCTTTGTATGT 57.991 29.630 0.00 0.00 0.00 2.29
698 699 9.840427 GTAATTGCATGTAACTCTTTGTATGTT 57.160 29.630 0.00 0.00 0.00 2.71
702 703 7.526608 TGCATGTAACTCTTTGTATGTTTAGC 58.473 34.615 0.00 0.00 0.00 3.09
703 704 7.174080 TGCATGTAACTCTTTGTATGTTTAGCA 59.826 33.333 0.00 0.00 0.00 3.49
704 705 8.184192 GCATGTAACTCTTTGTATGTTTAGCAT 58.816 33.333 0.00 0.00 41.42 3.79
719 720 7.938563 TGTTTAGCATTATTGTTTTCACACC 57.061 32.000 0.00 0.00 30.32 4.16
720 721 7.721402 TGTTTAGCATTATTGTTTTCACACCT 58.279 30.769 0.00 0.00 30.32 4.00
725 726 8.121305 AGCATTATTGTTTTCACACCTCATAA 57.879 30.769 0.00 0.00 30.32 1.90
733 734 5.895636 TTTCACACCTCATAATCGCATTT 57.104 34.783 0.00 0.00 0.00 2.32
743 744 0.970427 AATCGCATTTCCACCCCACC 60.970 55.000 0.00 0.00 0.00 4.61
746 747 3.190349 CATTTCCACCCCACCCCT 58.810 61.111 0.00 0.00 0.00 4.79
747 748 1.000359 CATTTCCACCCCACCCCTC 60.000 63.158 0.00 0.00 0.00 4.30
748 749 2.612493 ATTTCCACCCCACCCCTCG 61.612 63.158 0.00 0.00 0.00 4.63
756 757 3.003173 CCACCCCTCGGCTTCAGA 61.003 66.667 0.00 0.00 0.00 3.27
757 758 2.581354 CACCCCTCGGCTTCAGAG 59.419 66.667 0.00 0.00 35.60 3.35
824 830 2.284112 TACGACGGCTTTCCCCCT 60.284 61.111 0.00 0.00 0.00 4.79
825 831 1.914764 TACGACGGCTTTCCCCCTT 60.915 57.895 0.00 0.00 0.00 3.95
898 906 2.005606 TTCCTCCTTGCCACCAAGCA 62.006 55.000 0.00 0.00 45.65 3.91
908 916 1.604593 CACCAAGCACAGGGGAAGG 60.605 63.158 0.00 0.00 0.00 3.46
1009 1017 3.366396 AGTAGCGAAGAGATGGAAGGAA 58.634 45.455 0.00 0.00 0.00 3.36
1087 1095 1.383248 CTGGAGGGGGAGTACAGGG 60.383 68.421 0.00 0.00 0.00 4.45
1196 1204 1.081175 CTCTCGACACGCAGCTCAA 60.081 57.895 0.00 0.00 0.00 3.02
1253 1261 6.220726 TGAGATTGAGGATTACATCGACAA 57.779 37.500 0.00 0.00 32.73 3.18
1271 1279 4.143115 CGACAAGTACATGAATCACCACAC 60.143 45.833 4.87 0.00 0.00 3.82
1327 1335 3.322514 CTCTTTTGGAAGGGCGTCA 57.677 52.632 0.00 0.00 33.56 4.35
1340 1348 3.936585 GCGTCAGCAAGGTGAAAAA 57.063 47.368 3.23 0.00 44.35 1.94
1427 1435 2.356553 GCGCCGTGACAGGTACAA 60.357 61.111 0.00 0.00 0.00 2.41
1452 1460 0.251354 ATGCGATGGTCTGTTCTGCT 59.749 50.000 0.00 0.00 0.00 4.24
1501 1509 2.202395 TTGCCTGCCCTCTTTGTGC 61.202 57.895 0.00 0.00 0.00 4.57
1585 1593 3.181422 TGAGGAGGTCTCACTGAAGGTTA 60.181 47.826 0.14 0.00 46.71 2.85
1599 1607 7.400339 TCACTGAAGGTTATTTCTCTCATAGGT 59.600 37.037 0.00 0.00 0.00 3.08
1689 1697 1.400142 CAAGCTTTTGTGTCGGTGTCA 59.600 47.619 0.00 0.00 0.00 3.58
1723 1731 2.989422 AAGAAAGATTTTGCGGTCCG 57.011 45.000 6.99 6.99 0.00 4.79
1731 1739 4.717629 TTGCGGTCCGTGCTCTCG 62.718 66.667 13.94 0.00 0.00 4.04
1778 1786 2.622064 TCTCGATCGAGTGATGAGGA 57.378 50.000 36.68 18.12 42.49 3.71
1900 1908 7.360861 CGCTGAATACTCATAACTTTGTTTCCA 60.361 37.037 0.00 0.00 0.00 3.53
1942 1950 6.146837 CAGCTTGAGATTTATGGTTCTATCGG 59.853 42.308 0.00 0.00 0.00 4.18
2239 2247 9.107367 CTGATTCGAAAATCTTGTTCTTTACAC 57.893 33.333 0.00 0.00 41.63 2.90
2345 2355 5.824904 AGCAATCATCACAATTGGTAGTC 57.175 39.130 10.83 0.00 41.61 2.59
2566 5244 1.043116 TGGTGAGGAGGTGGATAGCG 61.043 60.000 0.00 0.00 0.00 4.26
2613 5291 6.073276 GGTGGGAAAAATTTATTTGACACAGC 60.073 38.462 0.00 9.04 33.85 4.40
2801 5486 3.754965 AGCTTGGTCTCACAGCATAAAA 58.245 40.909 0.00 0.00 30.77 1.52
2833 5518 0.527817 CGATTGACTACCGTGGCCTC 60.528 60.000 3.32 0.00 0.00 4.70
2923 5608 3.777522 CTGATCAAGTACCTCCCCTTTCT 59.222 47.826 0.00 0.00 0.00 2.52
2933 5618 3.142028 ACCTCCCCTTTCTGAATTTCCAA 59.858 43.478 0.00 0.00 0.00 3.53
3235 5920 3.196901 AGGAACTGTCATGCATAACCGTA 59.803 43.478 0.00 0.00 37.18 4.02
3259 5944 3.195610 ACGACAGCACCTCAATCAATCTA 59.804 43.478 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.524621 CATCGACATGTCTGCCCCC 60.525 63.158 22.95 0.00 0.00 5.40
1 2 0.107456 ATCATCGACATGTCTGCCCC 59.893 55.000 22.95 0.00 0.00 5.80
2 3 1.224075 CATCATCGACATGTCTGCCC 58.776 55.000 22.95 0.00 0.00 5.36
3 4 1.202568 TCCATCATCGACATGTCTGCC 60.203 52.381 22.95 0.00 0.00 4.85
4 5 1.863454 GTCCATCATCGACATGTCTGC 59.137 52.381 22.95 0.00 0.00 4.26
5 6 2.122564 CGTCCATCATCGACATGTCTG 58.877 52.381 22.95 15.41 0.00 3.51
6 7 2.024414 TCGTCCATCATCGACATGTCT 58.976 47.619 22.95 2.85 0.00 3.41
7 8 2.389059 CTCGTCCATCATCGACATGTC 58.611 52.381 16.21 16.21 32.65 3.06
8 9 1.536922 GCTCGTCCATCATCGACATGT 60.537 52.381 0.00 0.00 32.65 3.21
9 10 1.135046 GCTCGTCCATCATCGACATG 58.865 55.000 0.00 0.00 32.65 3.21
10 11 0.746659 TGCTCGTCCATCATCGACAT 59.253 50.000 0.00 0.00 32.65 3.06
11 12 0.101219 CTGCTCGTCCATCATCGACA 59.899 55.000 0.00 0.00 32.65 4.35
12 13 0.596083 CCTGCTCGTCCATCATCGAC 60.596 60.000 0.00 0.00 32.65 4.20
13 14 1.037579 ACCTGCTCGTCCATCATCGA 61.038 55.000 0.00 0.00 34.88 3.59
14 15 0.596083 GACCTGCTCGTCCATCATCG 60.596 60.000 0.00 0.00 0.00 3.84
15 16 0.461548 TGACCTGCTCGTCCATCATC 59.538 55.000 1.95 0.00 31.35 2.92
16 17 0.904649 TTGACCTGCTCGTCCATCAT 59.095 50.000 1.95 0.00 31.35 2.45
17 18 0.247460 CTTGACCTGCTCGTCCATCA 59.753 55.000 1.95 0.00 31.35 3.07
18 19 0.460987 CCTTGACCTGCTCGTCCATC 60.461 60.000 1.95 0.00 31.35 3.51
19 20 1.599047 CCTTGACCTGCTCGTCCAT 59.401 57.895 1.95 0.00 31.35 3.41
20 21 3.059982 CCTTGACCTGCTCGTCCA 58.940 61.111 1.95 0.00 31.35 4.02
21 22 2.435059 GCCTTGACCTGCTCGTCC 60.435 66.667 1.95 0.00 31.35 4.79
22 23 2.811317 CGCCTTGACCTGCTCGTC 60.811 66.667 0.00 0.00 0.00 4.20
23 24 3.616721 ACGCCTTGACCTGCTCGT 61.617 61.111 0.00 0.00 0.00 4.18
24 25 3.114616 CACGCCTTGACCTGCTCG 61.115 66.667 0.00 0.00 0.00 5.03
25 26 2.167398 TACCACGCCTTGACCTGCTC 62.167 60.000 0.00 0.00 0.00 4.26
26 27 2.214216 TACCACGCCTTGACCTGCT 61.214 57.895 0.00 0.00 0.00 4.24
27 28 2.033194 GTACCACGCCTTGACCTGC 61.033 63.158 0.00 0.00 0.00 4.85
28 29 1.375523 GGTACCACGCCTTGACCTG 60.376 63.158 7.15 0.00 0.00 4.00
29 30 1.535687 AGGTACCACGCCTTGACCT 60.536 57.895 15.94 0.00 35.65 3.85
30 31 1.375523 CAGGTACCACGCCTTGACC 60.376 63.158 15.94 0.00 33.31 4.02
31 32 0.669625 GTCAGGTACCACGCCTTGAC 60.670 60.000 15.94 13.83 33.31 3.18
32 33 1.669440 GTCAGGTACCACGCCTTGA 59.331 57.895 15.94 4.82 33.31 3.02
33 34 1.736645 CGTCAGGTACCACGCCTTG 60.737 63.158 15.94 2.09 33.31 3.61
34 35 1.466025 TTCGTCAGGTACCACGCCTT 61.466 55.000 15.94 0.00 35.42 4.35
35 36 1.874345 CTTCGTCAGGTACCACGCCT 61.874 60.000 15.94 0.00 35.42 5.52
36 37 1.445582 CTTCGTCAGGTACCACGCC 60.446 63.158 15.94 0.00 35.42 5.68
37 38 2.092882 GCTTCGTCAGGTACCACGC 61.093 63.158 15.94 0.00 35.42 5.34
38 39 1.800315 CGCTTCGTCAGGTACCACG 60.800 63.158 15.94 16.29 36.59 4.94
39 40 2.092882 GCGCTTCGTCAGGTACCAC 61.093 63.158 15.94 3.20 0.00 4.16
40 41 2.260434 GCGCTTCGTCAGGTACCA 59.740 61.111 15.94 0.00 0.00 3.25
41 42 2.879462 CGCGCTTCGTCAGGTACC 60.879 66.667 2.73 2.73 0.00 3.34
42 43 2.879462 CCGCGCTTCGTCAGGTAC 60.879 66.667 5.56 0.00 36.19 3.34
43 44 4.789075 GCCGCGCTTCGTCAGGTA 62.789 66.667 5.56 0.00 36.19 3.08
50 51 4.880537 AGATGAGGCCGCGCTTCG 62.881 66.667 5.56 0.00 37.47 3.79
51 52 2.512515 AAGATGAGGCCGCGCTTC 60.513 61.111 5.56 2.86 35.17 3.86
52 53 2.803155 TTCAAGATGAGGCCGCGCTT 62.803 55.000 5.56 8.30 0.00 4.68
53 54 3.315142 TTCAAGATGAGGCCGCGCT 62.315 57.895 5.56 0.00 0.00 5.92
54 55 2.819595 TTCAAGATGAGGCCGCGC 60.820 61.111 0.00 0.00 0.00 6.86
55 56 2.464459 GGTTCAAGATGAGGCCGCG 61.464 63.158 0.00 0.00 0.00 6.46
56 57 1.372087 CTGGTTCAAGATGAGGCCGC 61.372 60.000 0.00 0.00 0.00 6.53
57 58 0.250234 TCTGGTTCAAGATGAGGCCG 59.750 55.000 0.00 0.00 0.00 6.13
58 59 2.725221 ATCTGGTTCAAGATGAGGCC 57.275 50.000 0.00 0.00 35.54 5.19
64 65 3.726557 TGAAGGCATCTGGTTCAAGAT 57.273 42.857 0.00 0.00 37.39 2.40
65 66 3.149196 GTTGAAGGCATCTGGTTCAAGA 58.851 45.455 0.00 0.00 40.06 3.02
66 67 2.229784 GGTTGAAGGCATCTGGTTCAAG 59.770 50.000 0.00 0.00 40.06 3.02
67 68 2.238521 GGTTGAAGGCATCTGGTTCAA 58.761 47.619 0.00 0.00 37.75 2.69
68 69 1.144708 TGGTTGAAGGCATCTGGTTCA 59.855 47.619 0.00 0.00 0.00 3.18
69 70 1.541588 GTGGTTGAAGGCATCTGGTTC 59.458 52.381 0.00 0.00 0.00 3.62
70 71 1.620822 GTGGTTGAAGGCATCTGGTT 58.379 50.000 0.00 0.00 0.00 3.67
71 72 0.251341 GGTGGTTGAAGGCATCTGGT 60.251 55.000 0.00 0.00 0.00 4.00
72 73 1.308069 CGGTGGTTGAAGGCATCTGG 61.308 60.000 0.00 0.00 0.00 3.86
73 74 1.926511 GCGGTGGTTGAAGGCATCTG 61.927 60.000 0.00 0.00 0.00 2.90
74 75 1.675641 GCGGTGGTTGAAGGCATCT 60.676 57.895 0.00 0.00 0.00 2.90
75 76 2.877691 GCGGTGGTTGAAGGCATC 59.122 61.111 0.00 0.00 0.00 3.91
76 77 3.055719 CGCGGTGGTTGAAGGCAT 61.056 61.111 0.00 0.00 0.00 4.40
79 80 3.599285 TAGGCGCGGTGGTTGAAGG 62.599 63.158 8.83 0.00 0.00 3.46
80 81 2.047655 TAGGCGCGGTGGTTGAAG 60.048 61.111 8.83 0.00 0.00 3.02
81 82 2.357760 GTAGGCGCGGTGGTTGAA 60.358 61.111 8.83 0.00 0.00 2.69
82 83 4.728102 CGTAGGCGCGGTGGTTGA 62.728 66.667 8.83 0.00 0.00 3.18
100 101 4.358841 TGTTGGGGTCGGCATGGG 62.359 66.667 0.00 0.00 0.00 4.00
101 102 3.061848 GTGTTGGGGTCGGCATGG 61.062 66.667 0.00 0.00 0.00 3.66
102 103 3.061848 GGTGTTGGGGTCGGCATG 61.062 66.667 0.00 0.00 0.00 4.06
103 104 4.715523 CGGTGTTGGGGTCGGCAT 62.716 66.667 0.00 0.00 0.00 4.40
124 125 4.161295 TTCATCGCTCGGGCTGGG 62.161 66.667 5.36 0.00 36.09 4.45
125 126 2.587194 CTTCATCGCTCGGGCTGG 60.587 66.667 5.36 0.00 36.09 4.85
126 127 3.267860 GCTTCATCGCTCGGGCTG 61.268 66.667 5.36 0.00 36.09 4.85
127 128 4.537433 GGCTTCATCGCTCGGGCT 62.537 66.667 5.36 0.00 36.09 5.19
128 129 4.838152 TGGCTTCATCGCTCGGGC 62.838 66.667 0.00 0.00 0.00 6.13
129 130 2.892425 GTGGCTTCATCGCTCGGG 60.892 66.667 0.00 0.00 0.00 5.14
130 131 3.257561 CGTGGCTTCATCGCTCGG 61.258 66.667 0.00 0.00 0.00 4.63
131 132 3.918220 GCGTGGCTTCATCGCTCG 61.918 66.667 0.00 0.00 45.29 5.03
135 136 3.554692 GTCGGCGTGGCTTCATCG 61.555 66.667 6.85 0.00 0.00 3.84
136 137 3.554692 CGTCGGCGTGGCTTCATC 61.555 66.667 6.85 0.00 0.00 2.92
163 164 4.704833 TTCTGTGCTCGGGCTGGC 62.705 66.667 9.62 0.00 39.59 4.85
164 165 2.435586 CTTCTGTGCTCGGGCTGG 60.436 66.667 9.62 0.00 39.59 4.85
165 166 3.123620 GCTTCTGTGCTCGGGCTG 61.124 66.667 9.62 0.00 39.59 4.85
166 167 4.400961 GGCTTCTGTGCTCGGGCT 62.401 66.667 9.62 0.00 39.59 5.19
167 168 4.704833 TGGCTTCTGTGCTCGGGC 62.705 66.667 0.00 0.00 39.26 6.13
168 169 2.743928 GTGGCTTCTGTGCTCGGG 60.744 66.667 0.00 0.00 0.00 5.14
169 170 3.114616 CGTGGCTTCTGTGCTCGG 61.115 66.667 0.00 0.00 0.00 4.63
170 171 3.782244 GCGTGGCTTCTGTGCTCG 61.782 66.667 0.00 0.00 35.17 5.03
171 172 3.426568 GGCGTGGCTTCTGTGCTC 61.427 66.667 0.00 0.00 0.00 4.26
174 175 3.414700 GTCGGCGTGGCTTCTGTG 61.415 66.667 6.85 0.00 0.00 3.66
210 211 2.240162 ATCAAACGACGGGCTCCTCC 62.240 60.000 0.00 0.00 0.00 4.30
211 212 1.084370 CATCAAACGACGGGCTCCTC 61.084 60.000 0.00 0.00 0.00 3.71
212 213 1.079127 CATCAAACGACGGGCTCCT 60.079 57.895 0.00 0.00 0.00 3.69
213 214 2.750888 GCATCAAACGACGGGCTCC 61.751 63.158 0.00 0.00 0.00 4.70
214 215 1.369091 ATGCATCAAACGACGGGCTC 61.369 55.000 0.00 0.00 0.00 4.70
215 216 0.960364 AATGCATCAAACGACGGGCT 60.960 50.000 0.00 0.00 0.00 5.19
216 217 0.523335 GAATGCATCAAACGACGGGC 60.523 55.000 0.00 0.00 0.00 6.13
217 218 0.098728 GGAATGCATCAAACGACGGG 59.901 55.000 0.00 0.00 0.00 5.28
218 219 1.086696 AGGAATGCATCAAACGACGG 58.913 50.000 0.00 0.00 0.00 4.79
219 220 2.900122 AAGGAATGCATCAAACGACG 57.100 45.000 0.00 0.00 0.00 5.12
220 221 2.663119 GCAAAGGAATGCATCAAACGAC 59.337 45.455 0.00 0.00 45.70 4.34
221 222 2.945278 GCAAAGGAATGCATCAAACGA 58.055 42.857 0.00 0.00 45.70 3.85
230 231 1.062525 CGCGTAGGCAAAGGAATGC 59.937 57.895 8.32 0.00 45.67 3.56
231 232 0.373716 GACGCGTAGGCAAAGGAATG 59.626 55.000 13.97 0.00 39.92 2.67
232 233 0.743345 GGACGCGTAGGCAAAGGAAT 60.743 55.000 13.97 0.00 39.92 3.01
233 234 1.375013 GGACGCGTAGGCAAAGGAA 60.375 57.895 13.97 0.00 39.92 3.36
234 235 1.823169 AAGGACGCGTAGGCAAAGGA 61.823 55.000 13.97 0.00 39.92 3.36
235 236 1.359459 GAAGGACGCGTAGGCAAAGG 61.359 60.000 13.97 0.00 39.92 3.11
236 237 1.683790 CGAAGGACGCGTAGGCAAAG 61.684 60.000 13.97 0.00 39.92 2.77
237 238 1.735198 CGAAGGACGCGTAGGCAAA 60.735 57.895 13.97 0.00 39.92 3.68
238 239 2.126228 CGAAGGACGCGTAGGCAA 60.126 61.111 13.97 0.00 39.92 4.52
239 240 2.424705 AAACGAAGGACGCGTAGGCA 62.425 55.000 13.97 0.00 46.94 4.75
240 241 1.287041 AAAACGAAGGACGCGTAGGC 61.287 55.000 13.97 0.00 46.94 3.93
241 242 0.437295 CAAAACGAAGGACGCGTAGG 59.563 55.000 13.97 1.95 46.94 3.18
242 243 1.411394 TCAAAACGAAGGACGCGTAG 58.589 50.000 13.97 4.02 46.94 3.51
243 244 1.522258 GTTCAAAACGAAGGACGCGTA 59.478 47.619 13.97 0.00 46.94 4.42
244 245 0.302589 GTTCAAAACGAAGGACGCGT 59.697 50.000 13.85 13.85 46.94 6.01
245 246 3.052711 GTTCAAAACGAAGGACGCG 57.947 52.632 3.53 3.53 46.94 6.01
255 256 1.771291 CGAAAGTTCGGCGTTCAAAAC 59.229 47.619 6.85 3.23 46.30 2.43
256 257 2.093972 CGAAAGTTCGGCGTTCAAAA 57.906 45.000 6.85 0.00 46.30 2.44
257 258 3.810148 CGAAAGTTCGGCGTTCAAA 57.190 47.368 6.85 0.00 46.30 2.69
267 268 3.960002 CGATCAAACACACACGAAAGTTC 59.040 43.478 0.00 0.00 46.40 3.01
268 269 3.787476 GCGATCAAACACACACGAAAGTT 60.787 43.478 0.00 0.00 46.40 2.66
270 271 2.298300 GCGATCAAACACACACGAAAG 58.702 47.619 0.00 0.00 0.00 2.62
271 272 1.003331 GGCGATCAAACACACACGAAA 60.003 47.619 0.00 0.00 0.00 3.46
272 273 0.584396 GGCGATCAAACACACACGAA 59.416 50.000 0.00 0.00 0.00 3.85
273 274 1.553195 CGGCGATCAAACACACACGA 61.553 55.000 0.00 0.00 0.00 4.35
274 275 1.154672 CGGCGATCAAACACACACG 60.155 57.895 0.00 0.00 0.00 4.49
275 276 0.584396 TTCGGCGATCAAACACACAC 59.416 50.000 11.76 0.00 0.00 3.82
276 277 0.584396 GTTCGGCGATCAAACACACA 59.416 50.000 11.76 0.00 0.00 3.72
277 278 0.865769 AGTTCGGCGATCAAACACAC 59.134 50.000 19.04 8.23 0.00 3.82
278 279 1.262950 CAAGTTCGGCGATCAAACACA 59.737 47.619 19.04 0.00 0.00 3.72
279 280 1.263217 ACAAGTTCGGCGATCAAACAC 59.737 47.619 19.04 9.67 0.00 3.32
280 281 1.262950 CACAAGTTCGGCGATCAAACA 59.737 47.619 19.04 0.00 0.00 2.83
281 282 1.950472 CACAAGTTCGGCGATCAAAC 58.050 50.000 19.04 10.75 0.00 2.93
282 283 0.237235 GCACAAGTTCGGCGATCAAA 59.763 50.000 19.04 0.00 0.00 2.69
283 284 1.573829 GGCACAAGTTCGGCGATCAA 61.574 55.000 19.04 0.00 0.00 2.57
284 285 2.032634 GGCACAAGTTCGGCGATCA 61.033 57.895 19.04 0.00 0.00 2.92
285 286 2.750888 GGGCACAAGTTCGGCGATC 61.751 63.158 11.76 10.67 0.00 3.69
286 287 2.746277 GGGCACAAGTTCGGCGAT 60.746 61.111 11.76 0.00 0.00 4.58
287 288 2.951475 AAAGGGCACAAGTTCGGCGA 62.951 55.000 4.99 4.99 0.00 5.54
288 289 2.070654 AAAAGGGCACAAGTTCGGCG 62.071 55.000 0.00 0.00 0.00 6.46
289 290 0.104120 AAAAAGGGCACAAGTTCGGC 59.896 50.000 0.00 0.00 0.00 5.54
305 306 3.594603 TGTCTTTTCCGTTGCCAAAAA 57.405 38.095 0.00 0.00 0.00 1.94
306 307 3.056465 ACTTGTCTTTTCCGTTGCCAAAA 60.056 39.130 0.00 0.00 0.00 2.44
307 308 2.494073 ACTTGTCTTTTCCGTTGCCAAA 59.506 40.909 0.00 0.00 0.00 3.28
308 309 2.096248 ACTTGTCTTTTCCGTTGCCAA 58.904 42.857 0.00 0.00 0.00 4.52
309 310 1.757682 ACTTGTCTTTTCCGTTGCCA 58.242 45.000 0.00 0.00 0.00 4.92
310 311 2.857748 CAAACTTGTCTTTTCCGTTGCC 59.142 45.455 0.00 0.00 0.00 4.52
311 312 3.765026 TCAAACTTGTCTTTTCCGTTGC 58.235 40.909 0.00 0.00 0.00 4.17
312 313 6.885735 AATTCAAACTTGTCTTTTCCGTTG 57.114 33.333 0.00 0.00 0.00 4.10
313 314 9.030301 CATAAATTCAAACTTGTCTTTTCCGTT 57.970 29.630 0.00 0.00 0.00 4.44
314 315 7.169140 GCATAAATTCAAACTTGTCTTTTCCGT 59.831 33.333 0.00 0.00 0.00 4.69
315 316 7.501515 GCATAAATTCAAACTTGTCTTTTCCG 58.498 34.615 0.00 0.00 0.00 4.30
316 317 7.501515 CGCATAAATTCAAACTTGTCTTTTCC 58.498 34.615 0.00 0.00 0.00 3.13
317 318 7.003648 GCGCATAAATTCAAACTTGTCTTTTC 58.996 34.615 0.30 0.00 0.00 2.29
318 319 6.345723 CGCGCATAAATTCAAACTTGTCTTTT 60.346 34.615 8.75 0.00 0.00 2.27
319 320 5.116983 CGCGCATAAATTCAAACTTGTCTTT 59.883 36.000 8.75 0.00 0.00 2.52
320 321 4.616802 CGCGCATAAATTCAAACTTGTCTT 59.383 37.500 8.75 0.00 0.00 3.01
321 322 4.158384 CGCGCATAAATTCAAACTTGTCT 58.842 39.130 8.75 0.00 0.00 3.41
322 323 3.911964 ACGCGCATAAATTCAAACTTGTC 59.088 39.130 5.73 0.00 0.00 3.18
323 324 3.896122 ACGCGCATAAATTCAAACTTGT 58.104 36.364 5.73 0.00 0.00 3.16
324 325 4.158384 AGACGCGCATAAATTCAAACTTG 58.842 39.130 5.73 0.00 0.00 3.16
325 326 4.419522 AGACGCGCATAAATTCAAACTT 57.580 36.364 5.73 0.00 0.00 2.66
326 327 4.083537 TCAAGACGCGCATAAATTCAAACT 60.084 37.500 5.73 0.00 0.00 2.66
327 328 4.155449 TCAAGACGCGCATAAATTCAAAC 58.845 39.130 5.73 0.00 0.00 2.93
328 329 4.402583 CTCAAGACGCGCATAAATTCAAA 58.597 39.130 5.73 0.00 0.00 2.69
329 330 3.727673 GCTCAAGACGCGCATAAATTCAA 60.728 43.478 5.73 0.00 0.00 2.69
330 331 2.223021 GCTCAAGACGCGCATAAATTCA 60.223 45.455 5.73 0.00 0.00 2.57
331 332 2.366859 GCTCAAGACGCGCATAAATTC 58.633 47.619 5.73 0.00 0.00 2.17
332 333 1.064060 GGCTCAAGACGCGCATAAATT 59.936 47.619 5.73 0.00 0.00 1.82
333 334 0.657840 GGCTCAAGACGCGCATAAAT 59.342 50.000 5.73 0.00 0.00 1.40
334 335 0.672091 TGGCTCAAGACGCGCATAAA 60.672 50.000 5.73 0.00 0.00 1.40
335 336 0.672091 TTGGCTCAAGACGCGCATAA 60.672 50.000 5.73 0.00 0.00 1.90
336 337 0.672091 TTTGGCTCAAGACGCGCATA 60.672 50.000 5.73 0.00 0.00 3.14
337 338 1.514678 TTTTGGCTCAAGACGCGCAT 61.515 50.000 5.73 0.00 0.00 4.73
338 339 2.183504 TTTTGGCTCAAGACGCGCA 61.184 52.632 5.73 0.00 0.00 6.09
339 340 1.725973 GTTTTGGCTCAAGACGCGC 60.726 57.895 5.73 0.00 0.00 6.86
340 341 1.082104 GGTTTTGGCTCAAGACGCG 60.082 57.895 3.53 3.53 30.60 6.01
341 342 0.040067 CAGGTTTTGGCTCAAGACGC 60.040 55.000 3.63 0.00 30.60 5.19
342 343 0.593128 CCAGGTTTTGGCTCAAGACG 59.407 55.000 3.63 0.00 40.87 4.18
343 344 0.961753 CCCAGGTTTTGGCTCAAGAC 59.038 55.000 1.52 1.52 46.32 3.01
344 345 0.850100 TCCCAGGTTTTGGCTCAAGA 59.150 50.000 0.00 0.00 46.32 3.02
345 346 1.251251 CTCCCAGGTTTTGGCTCAAG 58.749 55.000 0.00 0.00 46.32 3.02
346 347 0.827507 GCTCCCAGGTTTTGGCTCAA 60.828 55.000 0.00 0.00 46.32 3.02
347 348 1.228552 GCTCCCAGGTTTTGGCTCA 60.229 57.895 0.00 0.00 46.32 4.26
348 349 2.335712 CGCTCCCAGGTTTTGGCTC 61.336 63.158 0.00 0.00 46.32 4.70
349 350 2.282462 CGCTCCCAGGTTTTGGCT 60.282 61.111 0.00 0.00 46.32 4.75
350 351 4.056125 GCGCTCCCAGGTTTTGGC 62.056 66.667 0.00 0.00 46.32 4.52
352 353 3.737172 CCGCGCTCCCAGGTTTTG 61.737 66.667 5.56 0.00 0.00 2.44
353 354 3.785122 AACCGCGCTCCCAGGTTTT 62.785 57.895 10.42 0.00 45.04 2.43
354 355 4.265056 AACCGCGCTCCCAGGTTT 62.265 61.111 10.42 0.00 45.04 3.27
361 362 4.699522 AGTTCCCAACCGCGCTCC 62.700 66.667 5.56 0.00 0.00 4.70
362 363 3.423154 CAGTTCCCAACCGCGCTC 61.423 66.667 5.56 0.00 0.00 5.03
365 366 2.046314 ATCCAGTTCCCAACCGCG 60.046 61.111 0.00 0.00 0.00 6.46
366 367 1.002624 TGATCCAGTTCCCAACCGC 60.003 57.895 0.00 0.00 0.00 5.68
367 368 0.324943 AGTGATCCAGTTCCCAACCG 59.675 55.000 0.00 0.00 0.00 4.44
368 369 2.162681 CAAGTGATCCAGTTCCCAACC 58.837 52.381 0.00 0.00 0.00 3.77
369 370 1.541588 GCAAGTGATCCAGTTCCCAAC 59.458 52.381 0.00 0.00 0.00 3.77
370 371 1.144708 TGCAAGTGATCCAGTTCCCAA 59.855 47.619 0.00 0.00 0.00 4.12
371 372 0.770499 TGCAAGTGATCCAGTTCCCA 59.230 50.000 0.00 0.00 0.00 4.37
372 373 1.457346 CTGCAAGTGATCCAGTTCCC 58.543 55.000 0.00 0.00 0.00 3.97
373 374 1.457346 CCTGCAAGTGATCCAGTTCC 58.543 55.000 0.00 0.00 0.00 3.62
374 375 1.457346 CCCTGCAAGTGATCCAGTTC 58.543 55.000 0.00 0.00 0.00 3.01
375 376 0.610232 GCCCTGCAAGTGATCCAGTT 60.610 55.000 0.00 0.00 0.00 3.16
376 377 1.001641 GCCCTGCAAGTGATCCAGT 60.002 57.895 0.00 0.00 0.00 4.00
377 378 2.110967 CGCCCTGCAAGTGATCCAG 61.111 63.158 0.00 0.00 0.00 3.86
378 379 2.046023 CGCCCTGCAAGTGATCCA 60.046 61.111 0.00 0.00 0.00 3.41
379 380 0.960364 TTTCGCCCTGCAAGTGATCC 60.960 55.000 0.87 0.00 0.00 3.36
380 381 0.881118 TTTTCGCCCTGCAAGTGATC 59.119 50.000 0.87 0.00 0.00 2.92
381 382 1.000274 GTTTTTCGCCCTGCAAGTGAT 60.000 47.619 0.87 0.00 0.00 3.06
382 383 0.383949 GTTTTTCGCCCTGCAAGTGA 59.616 50.000 0.00 0.00 0.00 3.41
383 384 0.597377 GGTTTTTCGCCCTGCAAGTG 60.597 55.000 0.00 0.00 0.00 3.16
384 385 1.739667 GGTTTTTCGCCCTGCAAGT 59.260 52.632 0.00 0.00 0.00 3.16
385 386 1.371635 CGGTTTTTCGCCCTGCAAG 60.372 57.895 0.00 0.00 0.00 4.01
386 387 2.725008 CGGTTTTTCGCCCTGCAA 59.275 55.556 0.00 0.00 0.00 4.08
395 396 2.331019 ATATGCGCCGGCGGTTTTTC 62.331 55.000 45.81 29.84 44.10 2.29
396 397 2.411504 ATATGCGCCGGCGGTTTTT 61.412 52.632 45.81 17.13 44.10 1.94
397 398 2.826738 ATATGCGCCGGCGGTTTT 60.827 55.556 45.81 19.28 44.10 2.43
398 399 3.582120 CATATGCGCCGGCGGTTT 61.582 61.111 45.81 21.46 44.10 3.27
407 408 1.623359 TTTCGTTTTGGCATATGCGC 58.377 45.000 21.04 14.27 43.26 6.09
408 409 3.240401 GTGATTTCGTTTTGGCATATGCG 59.760 43.478 21.04 6.64 43.26 4.73
409 410 3.551485 GGTGATTTCGTTTTGGCATATGC 59.449 43.478 19.79 19.79 41.14 3.14
410 411 3.790820 CGGTGATTTCGTTTTGGCATATG 59.209 43.478 0.00 0.00 0.00 1.78
411 412 3.181491 CCGGTGATTTCGTTTTGGCATAT 60.181 43.478 0.00 0.00 0.00 1.78
412 413 2.162608 CCGGTGATTTCGTTTTGGCATA 59.837 45.455 0.00 0.00 0.00 3.14
413 414 1.067915 CCGGTGATTTCGTTTTGGCAT 60.068 47.619 0.00 0.00 0.00 4.40
414 415 0.312416 CCGGTGATTTCGTTTTGGCA 59.688 50.000 0.00 0.00 0.00 4.92
415 416 0.594110 TCCGGTGATTTCGTTTTGGC 59.406 50.000 0.00 0.00 0.00 4.52
416 417 2.862512 CATCCGGTGATTTCGTTTTGG 58.137 47.619 0.00 0.00 0.00 3.28
417 418 2.250188 GCATCCGGTGATTTCGTTTTG 58.750 47.619 0.00 0.00 0.00 2.44
418 419 1.135803 CGCATCCGGTGATTTCGTTTT 60.136 47.619 0.00 0.00 0.00 2.43
419 420 0.446222 CGCATCCGGTGATTTCGTTT 59.554 50.000 0.00 0.00 0.00 3.60
420 421 1.977594 GCGCATCCGGTGATTTCGTT 61.978 55.000 0.30 0.00 34.32 3.85
421 422 2.461110 GCGCATCCGGTGATTTCGT 61.461 57.895 0.30 0.00 34.32 3.85
422 423 2.173669 AGCGCATCCGGTGATTTCG 61.174 57.895 11.47 0.00 44.48 3.46
423 424 3.813596 AGCGCATCCGGTGATTTC 58.186 55.556 11.47 0.00 44.48 2.17
439 440 3.242897 TTACGGTTCGGCCCCACAG 62.243 63.158 0.00 0.00 0.00 3.66
440 441 3.240011 TTACGGTTCGGCCCCACA 61.240 61.111 0.00 0.00 0.00 4.17
441 442 2.435410 CTTACGGTTCGGCCCCAC 60.435 66.667 0.00 0.00 0.00 4.61
442 443 2.604079 TCTTACGGTTCGGCCCCA 60.604 61.111 0.00 0.00 0.00 4.96
443 444 1.683418 ATCTCTTACGGTTCGGCCCC 61.683 60.000 0.00 0.00 0.00 5.80
444 445 0.249363 GATCTCTTACGGTTCGGCCC 60.249 60.000 0.00 0.00 0.00 5.80
445 446 0.594284 CGATCTCTTACGGTTCGGCC 60.594 60.000 0.00 0.00 0.00 6.13
446 447 1.207377 GCGATCTCTTACGGTTCGGC 61.207 60.000 0.00 0.00 0.00 5.54
447 448 0.594284 GGCGATCTCTTACGGTTCGG 60.594 60.000 0.00 0.00 0.00 4.30
448 449 0.381089 AGGCGATCTCTTACGGTTCG 59.619 55.000 0.00 0.00 0.00 3.95
449 450 3.252701 TCATAGGCGATCTCTTACGGTTC 59.747 47.826 0.00 0.00 0.00 3.62
450 451 3.220110 TCATAGGCGATCTCTTACGGTT 58.780 45.455 0.00 0.00 0.00 4.44
451 452 2.860009 TCATAGGCGATCTCTTACGGT 58.140 47.619 0.00 0.00 0.00 4.83
452 453 3.486043 CGATCATAGGCGATCTCTTACGG 60.486 52.174 0.00 0.00 39.78 4.02
453 454 3.675481 CGATCATAGGCGATCTCTTACG 58.325 50.000 0.00 0.00 39.78 3.18
454 455 3.430931 GCGATCATAGGCGATCTCTTAC 58.569 50.000 0.00 0.00 39.78 2.34
455 456 2.423892 GGCGATCATAGGCGATCTCTTA 59.576 50.000 0.00 0.00 39.78 2.10
456 457 1.203523 GGCGATCATAGGCGATCTCTT 59.796 52.381 0.00 0.00 39.78 2.85
457 458 0.814457 GGCGATCATAGGCGATCTCT 59.186 55.000 0.00 0.00 39.78 3.10
458 459 3.337398 GGCGATCATAGGCGATCTC 57.663 57.895 0.00 0.00 39.78 2.75
464 465 0.861837 CAAGTTCGGCGATCATAGGC 59.138 55.000 19.04 1.36 0.00 3.93
465 466 1.860950 CACAAGTTCGGCGATCATAGG 59.139 52.381 19.04 8.27 0.00 2.57
466 467 1.258982 GCACAAGTTCGGCGATCATAG 59.741 52.381 19.04 10.73 0.00 2.23
467 468 1.286501 GCACAAGTTCGGCGATCATA 58.713 50.000 19.04 0.00 0.00 2.15
468 469 1.369091 GGCACAAGTTCGGCGATCAT 61.369 55.000 19.04 5.32 0.00 2.45
469 470 2.032634 GGCACAAGTTCGGCGATCA 61.033 57.895 19.04 0.00 0.00 2.92
470 471 2.750888 GGGCACAAGTTCGGCGATC 61.751 63.158 11.76 10.67 0.00 3.69
471 472 2.746277 GGGCACAAGTTCGGCGAT 60.746 61.111 11.76 0.00 0.00 4.58
472 473 2.951475 AAAGGGCACAAGTTCGGCGA 62.951 55.000 4.99 4.99 0.00 5.54
473 474 2.070654 AAAAGGGCACAAGTTCGGCG 62.071 55.000 0.00 0.00 0.00 6.46
474 475 0.104120 AAAAAGGGCACAAGTTCGGC 59.896 50.000 0.00 0.00 0.00 5.54
490 491 3.388350 AGGAAATTTACCGGTGGCAAAAA 59.612 39.130 19.93 9.90 0.00 1.94
491 492 2.966516 AGGAAATTTACCGGTGGCAAAA 59.033 40.909 19.93 10.33 0.00 2.44
492 493 2.599677 AGGAAATTTACCGGTGGCAAA 58.400 42.857 19.93 10.75 0.00 3.68
493 494 2.296073 AGGAAATTTACCGGTGGCAA 57.704 45.000 19.93 7.82 0.00 4.52
494 495 2.296073 AAGGAAATTTACCGGTGGCA 57.704 45.000 19.93 0.01 0.00 4.92
495 496 3.671008 AAAAGGAAATTTACCGGTGGC 57.329 42.857 19.93 0.00 0.00 5.01
496 497 4.231439 CGAAAAAGGAAATTTACCGGTGG 58.769 43.478 19.93 0.00 0.00 4.61
497 498 3.671459 GCGAAAAAGGAAATTTACCGGTG 59.329 43.478 19.93 0.00 0.00 4.94
498 499 3.318557 TGCGAAAAAGGAAATTTACCGGT 59.681 39.130 13.98 13.98 0.00 5.28
499 500 3.671459 GTGCGAAAAAGGAAATTTACCGG 59.329 43.478 0.00 0.00 0.00 5.28
500 501 3.359580 CGTGCGAAAAAGGAAATTTACCG 59.640 43.478 0.00 0.00 0.00 4.02
501 502 4.538917 TCGTGCGAAAAAGGAAATTTACC 58.461 39.130 0.00 0.00 0.00 2.85
502 503 5.209977 ACTCGTGCGAAAAAGGAAATTTAC 58.790 37.500 0.00 0.00 0.00 2.01
503 504 5.427036 ACTCGTGCGAAAAAGGAAATTTA 57.573 34.783 0.00 0.00 0.00 1.40
504 505 4.301637 ACTCGTGCGAAAAAGGAAATTT 57.698 36.364 0.00 0.00 0.00 1.82
505 506 3.982576 ACTCGTGCGAAAAAGGAAATT 57.017 38.095 0.00 0.00 0.00 1.82
506 507 5.390613 CATTACTCGTGCGAAAAAGGAAAT 58.609 37.500 0.00 0.00 0.00 2.17
507 508 4.778904 CATTACTCGTGCGAAAAAGGAAA 58.221 39.130 0.00 0.00 0.00 3.13
508 509 3.364565 GCATTACTCGTGCGAAAAAGGAA 60.365 43.478 0.00 0.00 32.29 3.36
509 510 2.158841 GCATTACTCGTGCGAAAAAGGA 59.841 45.455 0.00 0.00 32.29 3.36
510 511 2.159627 AGCATTACTCGTGCGAAAAAGG 59.840 45.455 0.00 0.00 46.86 3.11
511 512 3.455619 AGCATTACTCGTGCGAAAAAG 57.544 42.857 0.00 0.00 46.86 2.27
512 513 3.741856 TGTAGCATTACTCGTGCGAAAAA 59.258 39.130 0.00 0.00 46.86 1.94
513 514 3.318886 TGTAGCATTACTCGTGCGAAAA 58.681 40.909 0.00 0.00 46.86 2.29
514 515 2.949142 TGTAGCATTACTCGTGCGAAA 58.051 42.857 0.00 0.00 46.86 3.46
515 516 2.640346 TGTAGCATTACTCGTGCGAA 57.360 45.000 0.00 0.00 46.86 4.70
516 517 2.159296 ACATGTAGCATTACTCGTGCGA 60.159 45.455 0.00 0.00 46.86 5.10
517 518 2.193447 ACATGTAGCATTACTCGTGCG 58.807 47.619 0.00 0.00 46.86 5.34
518 519 4.109766 TGTACATGTAGCATTACTCGTGC 58.890 43.478 5.62 0.00 42.81 5.34
519 520 6.466812 GTTTGTACATGTAGCATTACTCGTG 58.533 40.000 5.62 0.00 0.00 4.35
520 521 5.287752 CGTTTGTACATGTAGCATTACTCGT 59.712 40.000 5.62 0.00 0.00 4.18
521 522 5.513849 TCGTTTGTACATGTAGCATTACTCG 59.486 40.000 5.62 4.27 0.00 4.18
522 523 6.530534 ACTCGTTTGTACATGTAGCATTACTC 59.469 38.462 5.62 0.00 0.00 2.59
523 524 6.395629 ACTCGTTTGTACATGTAGCATTACT 58.604 36.000 5.62 0.00 0.00 2.24
524 525 6.642683 ACTCGTTTGTACATGTAGCATTAC 57.357 37.500 5.62 8.00 0.00 1.89
525 526 8.936070 ATAACTCGTTTGTACATGTAGCATTA 57.064 30.769 5.62 3.43 0.00 1.90
526 527 7.843490 ATAACTCGTTTGTACATGTAGCATT 57.157 32.000 5.62 1.51 0.00 3.56
527 528 8.936070 TTATAACTCGTTTGTACATGTAGCAT 57.064 30.769 5.62 0.00 0.00 3.79
528 529 7.490079 CCTTATAACTCGTTTGTACATGTAGCA 59.510 37.037 5.62 5.01 0.00 3.49
529 530 7.490402 ACCTTATAACTCGTTTGTACATGTAGC 59.510 37.037 5.62 2.31 0.00 3.58
530 531 8.922058 ACCTTATAACTCGTTTGTACATGTAG 57.078 34.615 5.62 0.00 0.00 2.74
531 532 9.709495 AAACCTTATAACTCGTTTGTACATGTA 57.291 29.630 0.08 0.08 0.00 2.29
532 533 8.611654 AAACCTTATAACTCGTTTGTACATGT 57.388 30.769 2.69 2.69 0.00 3.21
535 536 9.539825 TGTAAAACCTTATAACTCGTTTGTACA 57.460 29.630 0.00 0.00 0.00 2.90
559 560 9.883142 TTGACCAATCAAATTAACTCTTTTTGT 57.117 25.926 0.00 0.00 41.99 2.83
575 576 5.371526 GCCTTCTCATCTATTGACCAATCA 58.628 41.667 0.00 0.00 32.50 2.57
576 577 4.450419 CGCCTTCTCATCTATTGACCAATC 59.550 45.833 0.00 0.00 32.50 2.67
577 578 4.384056 CGCCTTCTCATCTATTGACCAAT 58.616 43.478 0.64 0.64 34.93 3.16
578 579 3.432186 CCGCCTTCTCATCTATTGACCAA 60.432 47.826 0.00 0.00 0.00 3.67
579 580 2.103094 CCGCCTTCTCATCTATTGACCA 59.897 50.000 0.00 0.00 0.00 4.02
580 581 2.760374 CCGCCTTCTCATCTATTGACC 58.240 52.381 0.00 0.00 0.00 4.02
581 582 2.139118 GCCGCCTTCTCATCTATTGAC 58.861 52.381 0.00 0.00 0.00 3.18
582 583 1.070758 GGCCGCCTTCTCATCTATTGA 59.929 52.381 0.71 0.00 0.00 2.57
583 584 1.517242 GGCCGCCTTCTCATCTATTG 58.483 55.000 0.71 0.00 0.00 1.90
584 585 0.398318 GGGCCGCCTTCTCATCTATT 59.602 55.000 9.86 0.00 0.00 1.73
585 586 0.764369 TGGGCCGCCTTCTCATCTAT 60.764 55.000 9.86 0.00 0.00 1.98
586 587 0.980754 TTGGGCCGCCTTCTCATCTA 60.981 55.000 9.86 0.00 0.00 1.98
587 588 2.300967 TTGGGCCGCCTTCTCATCT 61.301 57.895 9.86 0.00 0.00 2.90
588 589 2.115291 GTTGGGCCGCCTTCTCATC 61.115 63.158 9.86 0.00 0.00 2.92
589 590 2.044946 GTTGGGCCGCCTTCTCAT 60.045 61.111 9.86 0.00 0.00 2.90
590 591 4.697756 CGTTGGGCCGCCTTCTCA 62.698 66.667 9.86 0.00 0.00 3.27
598 599 3.262142 ATTTTCACGCGTTGGGCCG 62.262 57.895 10.22 0.00 38.94 6.13
599 600 1.443702 GATTTTCACGCGTTGGGCC 60.444 57.895 10.22 0.00 38.94 5.80
600 601 0.729140 CTGATTTTCACGCGTTGGGC 60.729 55.000 10.22 0.00 38.69 5.36
601 602 0.871722 TCTGATTTTCACGCGTTGGG 59.128 50.000 10.22 0.00 0.00 4.12
602 603 1.135972 CCTCTGATTTTCACGCGTTGG 60.136 52.381 10.22 0.00 0.00 3.77
603 604 1.135972 CCCTCTGATTTTCACGCGTTG 60.136 52.381 10.22 5.57 0.00 4.10
604 605 1.156736 CCCTCTGATTTTCACGCGTT 58.843 50.000 10.22 0.00 0.00 4.84
605 606 0.673644 CCCCTCTGATTTTCACGCGT 60.674 55.000 5.58 5.58 0.00 6.01
606 607 1.369091 CCCCCTCTGATTTTCACGCG 61.369 60.000 3.53 3.53 0.00 6.01
607 608 0.035439 TCCCCCTCTGATTTTCACGC 60.035 55.000 0.00 0.00 0.00 5.34
608 609 1.003118 TGTCCCCCTCTGATTTTCACG 59.997 52.381 0.00 0.00 0.00 4.35
609 610 2.879103 TGTCCCCCTCTGATTTTCAC 57.121 50.000 0.00 0.00 0.00 3.18
610 611 2.716424 ACTTGTCCCCCTCTGATTTTCA 59.284 45.455 0.00 0.00 0.00 2.69
611 612 3.441500 ACTTGTCCCCCTCTGATTTTC 57.558 47.619 0.00 0.00 0.00 2.29
612 613 3.897505 CAAACTTGTCCCCCTCTGATTTT 59.102 43.478 0.00 0.00 0.00 1.82
613 614 3.117131 ACAAACTTGTCCCCCTCTGATTT 60.117 43.478 0.00 0.00 36.50 2.17
614 615 2.447047 ACAAACTTGTCCCCCTCTGATT 59.553 45.455 0.00 0.00 36.50 2.57
615 616 2.065799 ACAAACTTGTCCCCCTCTGAT 58.934 47.619 0.00 0.00 36.50 2.90
616 617 1.142870 CACAAACTTGTCCCCCTCTGA 59.857 52.381 0.00 0.00 39.91 3.27
617 618 1.142870 TCACAAACTTGTCCCCCTCTG 59.857 52.381 0.00 0.00 39.91 3.35
618 619 1.518367 TCACAAACTTGTCCCCCTCT 58.482 50.000 0.00 0.00 39.91 3.69
619 620 2.558359 CAATCACAAACTTGTCCCCCTC 59.442 50.000 0.00 0.00 39.91 4.30
620 621 2.597455 CAATCACAAACTTGTCCCCCT 58.403 47.619 0.00 0.00 39.91 4.79
621 622 1.618343 CCAATCACAAACTTGTCCCCC 59.382 52.381 0.00 0.00 39.91 5.40
622 623 2.316108 ACCAATCACAAACTTGTCCCC 58.684 47.619 0.00 0.00 39.91 4.81
623 624 4.583073 ACTAACCAATCACAAACTTGTCCC 59.417 41.667 0.00 0.00 39.91 4.46
624 625 5.767816 ACTAACCAATCACAAACTTGTCC 57.232 39.130 0.00 0.00 39.91 4.02
625 626 7.724305 TCTACTAACCAATCACAAACTTGTC 57.276 36.000 0.00 0.00 39.91 3.18
626 627 7.936847 TCATCTACTAACCAATCACAAACTTGT 59.063 33.333 0.00 0.00 43.36 3.16
627 628 8.322906 TCATCTACTAACCAATCACAAACTTG 57.677 34.615 0.00 0.00 0.00 3.16
628 629 8.918202 TTCATCTACTAACCAATCACAAACTT 57.082 30.769 0.00 0.00 0.00 2.66
629 630 8.918202 TTTCATCTACTAACCAATCACAAACT 57.082 30.769 0.00 0.00 0.00 2.66
630 631 9.959749 TTTTTCATCTACTAACCAATCACAAAC 57.040 29.630 0.00 0.00 0.00 2.93
654 655 6.622896 GCAATTACACGCTGACTAGGATTTTT 60.623 38.462 0.00 0.00 0.00 1.94
655 656 5.163754 GCAATTACACGCTGACTAGGATTTT 60.164 40.000 0.00 0.00 0.00 1.82
656 657 4.332819 GCAATTACACGCTGACTAGGATTT 59.667 41.667 0.00 0.00 0.00 2.17
657 658 3.871594 GCAATTACACGCTGACTAGGATT 59.128 43.478 0.00 0.00 0.00 3.01
658 659 3.118775 TGCAATTACACGCTGACTAGGAT 60.119 43.478 0.00 0.00 0.00 3.24
659 660 2.232696 TGCAATTACACGCTGACTAGGA 59.767 45.455 0.00 0.00 0.00 2.94
660 661 2.616960 TGCAATTACACGCTGACTAGG 58.383 47.619 0.00 0.00 0.00 3.02
661 662 3.618594 ACATGCAATTACACGCTGACTAG 59.381 43.478 0.00 0.00 0.00 2.57
662 663 3.595173 ACATGCAATTACACGCTGACTA 58.405 40.909 0.00 0.00 0.00 2.59
663 664 2.426522 ACATGCAATTACACGCTGACT 58.573 42.857 0.00 0.00 0.00 3.41
664 665 2.900122 ACATGCAATTACACGCTGAC 57.100 45.000 0.00 0.00 0.00 3.51
665 666 4.000325 AGTTACATGCAATTACACGCTGA 59.000 39.130 0.00 0.00 0.00 4.26
666 667 4.093408 AGAGTTACATGCAATTACACGCTG 59.907 41.667 0.00 0.00 0.00 5.18
667 668 4.253685 AGAGTTACATGCAATTACACGCT 58.746 39.130 0.00 0.00 0.00 5.07
668 669 4.600012 AGAGTTACATGCAATTACACGC 57.400 40.909 0.00 0.00 0.00 5.34
669 670 6.370593 ACAAAGAGTTACATGCAATTACACG 58.629 36.000 0.00 0.00 0.00 4.49
670 671 9.277565 CATACAAAGAGTTACATGCAATTACAC 57.722 33.333 0.00 0.00 0.00 2.90
671 672 9.008965 ACATACAAAGAGTTACATGCAATTACA 57.991 29.630 0.00 0.00 0.00 2.41
672 673 9.840427 AACATACAAAGAGTTACATGCAATTAC 57.160 29.630 0.00 0.00 0.00 1.89
676 677 8.020819 GCTAAACATACAAAGAGTTACATGCAA 58.979 33.333 0.00 0.00 0.00 4.08
677 678 7.174080 TGCTAAACATACAAAGAGTTACATGCA 59.826 33.333 0.00 0.00 0.00 3.96
678 679 7.526608 TGCTAAACATACAAAGAGTTACATGC 58.473 34.615 0.00 0.00 0.00 4.06
693 694 9.632807 GGTGTGAAAACAATAATGCTAAACATA 57.367 29.630 0.00 0.00 38.34 2.29
694 695 8.367156 AGGTGTGAAAACAATAATGCTAAACAT 58.633 29.630 0.00 0.00 42.30 2.71
695 696 7.721402 AGGTGTGAAAACAATAATGCTAAACA 58.279 30.769 0.00 0.00 0.00 2.83
696 697 7.865385 TGAGGTGTGAAAACAATAATGCTAAAC 59.135 33.333 0.00 0.00 0.00 2.01
697 698 7.946207 TGAGGTGTGAAAACAATAATGCTAAA 58.054 30.769 0.00 0.00 0.00 1.85
698 699 7.517614 TGAGGTGTGAAAACAATAATGCTAA 57.482 32.000 0.00 0.00 0.00 3.09
699 700 7.701539 ATGAGGTGTGAAAACAATAATGCTA 57.298 32.000 0.00 0.00 0.00 3.49
700 701 6.594788 ATGAGGTGTGAAAACAATAATGCT 57.405 33.333 0.00 0.00 0.00 3.79
701 702 8.931385 ATTATGAGGTGTGAAAACAATAATGC 57.069 30.769 0.00 0.00 0.00 3.56
702 703 9.225201 CGATTATGAGGTGTGAAAACAATAATG 57.775 33.333 0.00 0.00 0.00 1.90
703 704 7.915397 GCGATTATGAGGTGTGAAAACAATAAT 59.085 33.333 0.00 0.00 0.00 1.28
704 705 7.094592 TGCGATTATGAGGTGTGAAAACAATAA 60.095 33.333 0.00 0.00 0.00 1.40
705 706 6.372937 TGCGATTATGAGGTGTGAAAACAATA 59.627 34.615 0.00 0.00 0.00 1.90
706 707 5.182950 TGCGATTATGAGGTGTGAAAACAAT 59.817 36.000 0.00 0.00 0.00 2.71
707 708 4.517075 TGCGATTATGAGGTGTGAAAACAA 59.483 37.500 0.00 0.00 0.00 2.83
708 709 4.068599 TGCGATTATGAGGTGTGAAAACA 58.931 39.130 0.00 0.00 0.00 2.83
709 710 4.678509 TGCGATTATGAGGTGTGAAAAC 57.321 40.909 0.00 0.00 0.00 2.43
710 711 5.895636 AATGCGATTATGAGGTGTGAAAA 57.104 34.783 0.00 0.00 0.00 2.29
711 712 5.163663 GGAAATGCGATTATGAGGTGTGAAA 60.164 40.000 0.00 0.00 0.00 2.69
712 713 4.335315 GGAAATGCGATTATGAGGTGTGAA 59.665 41.667 0.00 0.00 0.00 3.18
713 714 3.876914 GGAAATGCGATTATGAGGTGTGA 59.123 43.478 0.00 0.00 0.00 3.58
714 715 3.627123 TGGAAATGCGATTATGAGGTGTG 59.373 43.478 0.00 0.00 0.00 3.82
715 716 3.627577 GTGGAAATGCGATTATGAGGTGT 59.372 43.478 0.00 0.00 0.00 4.16
716 717 3.003689 GGTGGAAATGCGATTATGAGGTG 59.996 47.826 0.00 0.00 0.00 4.00
717 718 3.214328 GGTGGAAATGCGATTATGAGGT 58.786 45.455 0.00 0.00 0.00 3.85
718 719 2.554032 GGGTGGAAATGCGATTATGAGG 59.446 50.000 0.00 0.00 0.00 3.86
719 720 2.554032 GGGGTGGAAATGCGATTATGAG 59.446 50.000 0.00 0.00 0.00 2.90
720 721 2.092158 TGGGGTGGAAATGCGATTATGA 60.092 45.455 0.00 0.00 0.00 2.15
725 726 1.379843 GGTGGGGTGGAAATGCGAT 60.380 57.895 0.00 0.00 0.00 4.58
750 751 1.302832 AAACTGGGGCGCTCTGAAG 60.303 57.895 7.48 5.34 0.00 3.02
751 752 1.600636 CAAACTGGGGCGCTCTGAA 60.601 57.895 7.48 0.00 0.00 3.02
752 753 2.032528 CAAACTGGGGCGCTCTGA 59.967 61.111 7.48 0.00 0.00 3.27
753 754 3.741476 GCAAACTGGGGCGCTCTG 61.741 66.667 7.48 2.78 0.00 3.35
759 760 0.179018 AGGATATCGCAAACTGGGGC 60.179 55.000 0.00 0.00 0.00 5.80
1009 1017 4.101448 GGCGGCACTCACCAGGAT 62.101 66.667 3.07 0.00 0.00 3.24
1087 1095 2.674380 CCTCAGGCCCTTGTGCAC 60.674 66.667 10.75 10.75 0.00 4.57
1253 1261 2.642311 TGGGTGTGGTGATTCATGTACT 59.358 45.455 0.00 0.00 0.00 2.73
1327 1335 3.430790 GCTCCAAAGTTTTTCACCTTGCT 60.431 43.478 0.00 0.00 0.00 3.91
1340 1348 1.980765 TCTCATGGTGAGCTCCAAAGT 59.019 47.619 12.15 0.00 43.95 2.66
1427 1435 0.251354 ACAGACCATCGCATCAAGCT 59.749 50.000 0.00 0.00 42.61 3.74
1452 1460 2.108514 GCGCACAGCATTGGAGCTA 61.109 57.895 0.30 0.00 44.54 3.32
1473 1481 4.021925 GCAGGCAACCGAGGGTCT 62.022 66.667 0.00 0.00 33.12 3.85
1501 1509 1.975407 CAACAAGGCTGGCTCCCTG 60.975 63.158 3.48 1.68 31.73 4.45
1585 1593 5.254032 ACCCTCCAAAACCTATGAGAGAAAT 59.746 40.000 0.00 0.00 0.00 2.17
1599 1607 1.423921 GTCTTCCCTGACCCTCCAAAA 59.576 52.381 0.00 0.00 0.00 2.44
1653 1661 3.460103 AGCTTGGCAATTGAACAGTTTG 58.540 40.909 10.34 1.26 0.00 2.93
1731 1739 5.355630 GGGAGAGTCTTCCTTTCTTATTTGC 59.644 44.000 10.61 0.00 37.40 3.68
1778 1786 3.262660 TCTCATTGAGTTGATGAGCCACT 59.737 43.478 13.23 0.00 46.40 4.00
1857 1865 3.321968 TCAGCGATATTGTGATAGGCTGT 59.678 43.478 9.58 0.00 43.13 4.40
2239 2247 3.708563 TTTTCCAGAGCCAAAAACTCG 57.291 42.857 0.00 0.00 39.23 4.18
2345 2355 5.181811 TGCTATCTGATTTTGTGGTCAACAG 59.818 40.000 0.00 0.00 40.74 3.16
2404 2418 2.152016 GGGTTTTTCTCAAGTCCTCGG 58.848 52.381 0.00 0.00 0.00 4.63
2566 5244 6.868339 CACCATCAACCTTAACAAATCTTTCC 59.132 38.462 0.00 0.00 0.00 3.13
2657 5335 8.552083 TGACCATCATAGTTGATATATGTTGC 57.448 34.615 0.00 0.00 40.70 4.17
2801 5486 0.738975 TCAATCGAGAGTCGGCGAAT 59.261 50.000 12.92 11.73 40.88 3.34
2833 5518 4.794248 TGACACTGTCTTCACATTTTCG 57.206 40.909 10.54 0.00 33.15 3.46
2923 5608 3.511146 GCATTCTCAGGGTTGGAAATTCA 59.489 43.478 0.00 0.00 0.00 2.57
2933 5618 0.990374 AGAGCAAGCATTCTCAGGGT 59.010 50.000 0.00 0.00 0.00 4.34
2962 5647 6.743575 AGATAACCAATTTCCAACTTCTCG 57.256 37.500 0.00 0.00 0.00 4.04
3235 5920 0.969149 TGATTGAGGTGCTGTCGTCT 59.031 50.000 0.00 0.00 0.00 4.18
3259 5944 0.779997 AACCTCCCAACTCCTGCAAT 59.220 50.000 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.