Multiple sequence alignment - TraesCS7B01G320500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G320500 chr7B 100.000 3263 0 0 1 3263 570918130 570921392 0.000000e+00 5989.0
1 TraesCS7B01G320500 chr7B 89.305 1281 134 1 990 2270 139431765 139430488 0.000000e+00 1604.0
2 TraesCS7B01G320500 chr7B 84.962 266 23 12 2188 2440 571154785 571155046 1.500000e-63 254.0
3 TraesCS7B01G320500 chr7A 92.302 1481 89 14 799 2270 611346562 611348026 0.000000e+00 2080.0
4 TraesCS7B01G320500 chr7A 97.447 666 13 2 64 726 718168609 718167945 0.000000e+00 1133.0
5 TraesCS7B01G320500 chr7D 90.562 1282 116 3 990 2270 174794552 174793275 0.000000e+00 1692.0
6 TraesCS7B01G320500 chr7D 90.361 83 7 1 721 803 363295692 363295773 1.240000e-19 108.0
7 TraesCS7B01G320500 chr7D 93.750 64 3 1 2458 2520 1033612 1033549 9.640000e-16 95.3
8 TraesCS7B01G320500 chr5B 97.439 742 18 1 2522 3263 686334573 686335313 0.000000e+00 1264.0
9 TraesCS7B01G320500 chr5B 95.455 44 2 0 2449 2492 696618019 696618062 1.620000e-08 71.3
10 TraesCS7B01G320500 chr5B 84.848 66 10 0 1903 1968 567581454 567581389 2.100000e-07 67.6
11 TraesCS7B01G320500 chr5B 91.667 48 4 0 2445 2492 696589088 696589135 2.100000e-07 67.6
12 TraesCS7B01G320500 chr5B 91.667 48 4 0 2445 2492 696615838 696615885 2.100000e-07 67.6
13 TraesCS7B01G320500 chr5B 91.667 48 4 0 2445 2492 696621276 696621323 2.100000e-07 67.6
14 TraesCS7B01G320500 chr5B 90.000 50 4 1 2444 2492 696590718 696590767 2.720000e-06 63.9
15 TraesCS7B01G320500 chr5B 90.476 42 4 0 1925 1966 433945635 433945594 4.550000e-04 56.5
16 TraesCS7B01G320500 chr4A 97.463 670 13 2 61 726 721691313 721691982 0.000000e+00 1140.0
17 TraesCS7B01G320500 chr4A 97.185 675 14 3 56 727 339939087 339939759 0.000000e+00 1136.0
18 TraesCS7B01G320500 chr4A 97.033 674 17 1 56 726 663003707 663004380 0.000000e+00 1131.0
19 TraesCS7B01G320500 chr4A 91.325 415 18 5 2858 3256 661046629 661046217 4.760000e-153 551.0
20 TraesCS7B01G320500 chr4A 87.342 79 10 0 726 804 725582992 725583070 1.250000e-14 91.6
21 TraesCS7B01G320500 chr6A 97.459 669 13 2 61 726 117950436 117949769 0.000000e+00 1138.0
22 TraesCS7B01G320500 chr6A 93.750 48 2 1 2448 2495 23878234 23878280 1.620000e-08 71.3
23 TraesCS7B01G320500 chr4B 97.181 674 16 1 57 727 8811151 8810478 0.000000e+00 1136.0
24 TraesCS7B01G320500 chr4B 96.884 674 18 1 56 726 601993409 601994082 0.000000e+00 1125.0
25 TraesCS7B01G320500 chr4B 96.746 676 16 3 56 726 602593372 602594046 0.000000e+00 1122.0
26 TraesCS7B01G320500 chr4B 91.190 420 21 5 2858 3263 671095392 671094975 1.020000e-154 556.0
27 TraesCS7B01G320500 chr4B 88.462 78 2 4 2450 2520 14270662 14270585 1.610000e-13 87.9
28 TraesCS7B01G320500 chr4B 100.000 45 0 0 1 45 602596090 602596134 2.090000e-12 84.2
29 TraesCS7B01G320500 chr2B 96.884 674 18 1 56 726 787437861 787437188 0.000000e+00 1125.0
30 TraesCS7B01G320500 chr2B 90.244 82 6 2 722 802 209592583 209592663 4.450000e-19 106.0
31 TraesCS7B01G320500 chr2B 89.062 64 6 1 740 803 791912335 791912273 9.710000e-11 78.7
32 TraesCS7B01G320500 chr2B 94.118 51 1 2 2445 2495 41129482 41129530 3.490000e-10 76.8
33 TraesCS7B01G320500 chrUn 92.328 756 40 5 2522 3259 242529492 242528737 0.000000e+00 1059.0
34 TraesCS7B01G320500 chrUn 92.196 756 41 4 2522 3259 155061993 155062748 0.000000e+00 1053.0
35 TraesCS7B01G320500 chrUn 92.084 758 40 5 2522 3259 154979835 154980592 0.000000e+00 1050.0
36 TraesCS7B01G320500 chrUn 92.063 756 42 5 2522 3259 309757721 309756966 0.000000e+00 1048.0
37 TraesCS7B01G320500 chrUn 92.063 756 42 5 2522 3259 373763744 373762989 0.000000e+00 1048.0
38 TraesCS7B01G320500 chrUn 95.455 44 2 0 2449 2492 343556159 343556202 1.620000e-08 71.3
39 TraesCS7B01G320500 chrUn 91.667 48 4 0 2445 2492 382425843 382425890 2.100000e-07 67.6
40 TraesCS7B01G320500 chrUn 86.885 61 6 2 2445 2505 424581155 424581097 2.100000e-07 67.6
41 TraesCS7B01G320500 chr3B 92.328 756 40 5 2522 3259 793426174 793426929 0.000000e+00 1059.0
42 TraesCS7B01G320500 chr3B 92.063 756 42 5 2522 3259 792314029 792313274 0.000000e+00 1048.0
43 TraesCS7B01G320500 chr3B 92.063 756 42 5 2522 3259 792400846 792400091 0.000000e+00 1048.0
44 TraesCS7B01G320500 chr3B 93.596 203 12 1 3062 3263 828461783 828461985 5.290000e-78 302.0
45 TraesCS7B01G320500 chr3B 89.535 86 8 1 721 805 41581501 41581416 1.240000e-19 108.0
46 TraesCS7B01G320500 chr3B 88.235 68 3 2 2458 2520 725566555 725566622 3.490000e-10 76.8
47 TraesCS7B01G320500 chr1B 94.126 732 11 6 1 726 587998958 587999663 0.000000e+00 1048.0
48 TraesCS7B01G320500 chr4D 80.000 235 45 2 1832 2065 16413143 16412910 4.330000e-39 172.0
49 TraesCS7B01G320500 chr4D 74.817 409 70 19 1001 1376 16366978 16366570 1.570000e-33 154.0
50 TraesCS7B01G320500 chr2D 92.135 89 4 3 721 807 20595294 20595207 4.420000e-24 122.0
51 TraesCS7B01G320500 chr2D 90.625 64 3 3 2458 2520 326216613 326216552 7.500000e-12 82.4
52 TraesCS7B01G320500 chr2A 90.588 85 7 1 721 804 625012786 625012702 9.570000e-21 111.0
53 TraesCS7B01G320500 chr2A 89.157 83 9 0 721 803 543620846 543620764 1.600000e-18 104.0
54 TraesCS7B01G320500 chr2A 87.952 83 9 1 721 803 97835825 97835906 2.680000e-16 97.1
55 TraesCS7B01G320500 chr6D 90.541 74 3 4 2458 2530 44137845 44137775 9.640000e-16 95.3
56 TraesCS7B01G320500 chr5A 85.075 67 10 0 1903 1969 581573251 581573185 5.840000e-08 69.4
57 TraesCS7B01G320500 chr5A 97.222 36 1 0 1925 1960 468871374 468871409 9.780000e-06 62.1
58 TraesCS7B01G320500 chr5A 82.278 79 7 6 1885 1959 533082964 533082889 9.780000e-06 62.1
59 TraesCS7B01G320500 chr5D 84.848 66 10 0 1903 1968 461603974 461603909 2.100000e-07 67.6
60 TraesCS7B01G320500 chr5D 90.476 42 4 0 1925 1966 366780856 366780815 4.550000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G320500 chr7B 570918130 570921392 3262 False 5989.0 5989 100.000 1 3263 1 chr7B.!!$F1 3262
1 TraesCS7B01G320500 chr7B 139430488 139431765 1277 True 1604.0 1604 89.305 990 2270 1 chr7B.!!$R1 1280
2 TraesCS7B01G320500 chr7A 611346562 611348026 1464 False 2080.0 2080 92.302 799 2270 1 chr7A.!!$F1 1471
3 TraesCS7B01G320500 chr7A 718167945 718168609 664 True 1133.0 1133 97.447 64 726 1 chr7A.!!$R1 662
4 TraesCS7B01G320500 chr7D 174793275 174794552 1277 True 1692.0 1692 90.562 990 2270 1 chr7D.!!$R2 1280
5 TraesCS7B01G320500 chr5B 686334573 686335313 740 False 1264.0 1264 97.439 2522 3263 1 chr5B.!!$F1 741
6 TraesCS7B01G320500 chr4A 721691313 721691982 669 False 1140.0 1140 97.463 61 726 1 chr4A.!!$F3 665
7 TraesCS7B01G320500 chr4A 339939087 339939759 672 False 1136.0 1136 97.185 56 727 1 chr4A.!!$F1 671
8 TraesCS7B01G320500 chr4A 663003707 663004380 673 False 1131.0 1131 97.033 56 726 1 chr4A.!!$F2 670
9 TraesCS7B01G320500 chr6A 117949769 117950436 667 True 1138.0 1138 97.459 61 726 1 chr6A.!!$R1 665
10 TraesCS7B01G320500 chr4B 8810478 8811151 673 True 1136.0 1136 97.181 57 727 1 chr4B.!!$R1 670
11 TraesCS7B01G320500 chr4B 601993409 601994082 673 False 1125.0 1125 96.884 56 726 1 chr4B.!!$F1 670
12 TraesCS7B01G320500 chr4B 602593372 602596134 2762 False 603.1 1122 98.373 1 726 2 chr4B.!!$F2 725
13 TraesCS7B01G320500 chr2B 787437188 787437861 673 True 1125.0 1125 96.884 56 726 1 chr2B.!!$R1 670
14 TraesCS7B01G320500 chrUn 242528737 242529492 755 True 1059.0 1059 92.328 2522 3259 1 chrUn.!!$R1 737
15 TraesCS7B01G320500 chrUn 155061993 155062748 755 False 1053.0 1053 92.196 2522 3259 1 chrUn.!!$F2 737
16 TraesCS7B01G320500 chrUn 154979835 154980592 757 False 1050.0 1050 92.084 2522 3259 1 chrUn.!!$F1 737
17 TraesCS7B01G320500 chrUn 309756966 309757721 755 True 1048.0 1048 92.063 2522 3259 1 chrUn.!!$R2 737
18 TraesCS7B01G320500 chrUn 373762989 373763744 755 True 1048.0 1048 92.063 2522 3259 1 chrUn.!!$R3 737
19 TraesCS7B01G320500 chr3B 793426174 793426929 755 False 1059.0 1059 92.328 2522 3259 1 chr3B.!!$F2 737
20 TraesCS7B01G320500 chr3B 792313274 792314029 755 True 1048.0 1048 92.063 2522 3259 1 chr3B.!!$R2 737
21 TraesCS7B01G320500 chr3B 792400091 792400846 755 True 1048.0 1048 92.063 2522 3259 1 chr3B.!!$R3 737
22 TraesCS7B01G320500 chr1B 587998958 587999663 705 False 1048.0 1048 94.126 1 726 1 chr1B.!!$F1 725

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
821 831 0.106719 AATACCCGACCCCTTGCATG 60.107 55.0 0.0 0.0 0.0 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2287 2837 0.179018 CCCTTCTTGAATAGGGCCGG 60.179 60.0 0.0 0.0 44.4 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
260 266 0.254107 ACCTCCTCCTCCTCCTCTCT 60.254 60.000 0.00 0.00 0.00 3.10
289 295 1.593196 CTCTCCGGCAAAAGAACACA 58.407 50.000 0.00 0.00 0.00 3.72
319 325 6.053005 AGAACGTACAAGATCCAAAAACAGA 58.947 36.000 0.00 0.00 0.00 3.41
525 533 1.628340 TGGCCTATACTAATGGCGCAT 59.372 47.619 10.83 0.00 46.97 4.73
555 563 4.081642 CCTATACTAATGGCGCACTATGGT 60.082 45.833 10.83 2.71 0.00 3.55
664 674 1.498865 GCGTGCTAGTAATGGCGCAT 61.499 55.000 10.83 0.00 43.62 4.73
727 737 3.983044 AGGCCTTTTCCTAGTAGTGTG 57.017 47.619 0.00 0.00 33.95 3.82
731 741 2.993899 CCTTTTCCTAGTAGTGTGTGCG 59.006 50.000 0.00 0.00 0.00 5.34
733 743 2.717580 TTCCTAGTAGTGTGTGCGTG 57.282 50.000 0.00 0.00 0.00 5.34
734 744 1.612676 TCCTAGTAGTGTGTGCGTGT 58.387 50.000 0.00 0.00 0.00 4.49
735 745 1.268625 TCCTAGTAGTGTGTGCGTGTG 59.731 52.381 0.00 0.00 0.00 3.82
738 748 1.151777 AGTAGTGTGTGCGTGTGTGC 61.152 55.000 0.00 0.00 0.00 4.57
740 750 2.892542 TAGTGTGTGCGTGTGTGCGT 62.893 55.000 0.00 0.00 37.81 5.24
741 751 3.121676 TGTGTGCGTGTGTGCGTT 61.122 55.556 0.00 0.00 37.81 4.84
742 752 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
743 753 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
745 755 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
747 757 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
748 758 1.289109 GCGTGTGTGCGTTCATAGGT 61.289 55.000 0.00 0.00 0.00 3.08
749 759 0.438445 CGTGTGTGCGTTCATAGGTG 59.562 55.000 0.00 0.00 0.00 4.00
750 760 1.508632 GTGTGTGCGTTCATAGGTGT 58.491 50.000 0.00 0.00 0.00 4.16
751 761 2.679450 GTGTGTGCGTTCATAGGTGTA 58.321 47.619 0.00 0.00 0.00 2.90
752 762 3.061322 GTGTGTGCGTTCATAGGTGTAA 58.939 45.455 0.00 0.00 0.00 2.41
753 763 3.122948 GTGTGTGCGTTCATAGGTGTAAG 59.877 47.826 0.00 0.00 0.00 2.34
754 764 3.243941 TGTGTGCGTTCATAGGTGTAAGT 60.244 43.478 0.00 0.00 0.00 2.24
755 765 3.122948 GTGTGCGTTCATAGGTGTAAGTG 59.877 47.826 0.00 0.00 0.00 3.16
756 766 3.243941 TGTGCGTTCATAGGTGTAAGTGT 60.244 43.478 0.00 0.00 0.00 3.55
757 767 4.022155 TGTGCGTTCATAGGTGTAAGTGTA 60.022 41.667 0.00 0.00 0.00 2.90
758 768 4.325472 GTGCGTTCATAGGTGTAAGTGTAC 59.675 45.833 0.00 0.00 0.00 2.90
759 769 3.545078 GCGTTCATAGGTGTAAGTGTACG 59.455 47.826 0.00 0.00 38.06 3.67
760 770 3.545078 CGTTCATAGGTGTAAGTGTACGC 59.455 47.826 0.00 0.00 39.57 4.42
761 771 3.409851 TCATAGGTGTAAGTGTACGCG 57.590 47.619 3.53 3.53 40.94 6.01
762 772 1.850441 CATAGGTGTAAGTGTACGCGC 59.150 52.381 5.73 0.00 40.94 6.86
763 773 0.179192 TAGGTGTAAGTGTACGCGCG 60.179 55.000 30.96 30.96 40.94 6.86
764 774 1.730547 GGTGTAAGTGTACGCGCGT 60.731 57.895 39.05 39.05 40.94 6.01
765 775 1.409579 GTGTAAGTGTACGCGCGTG 59.590 57.895 42.78 19.78 31.38 5.34
766 776 1.008652 TGTAAGTGTACGCGCGTGT 60.009 52.632 42.78 29.73 32.40 4.49
767 777 0.236973 TGTAAGTGTACGCGCGTGTA 59.763 50.000 42.78 27.35 32.40 2.90
768 778 1.135717 TGTAAGTGTACGCGCGTGTAT 60.136 47.619 42.78 25.57 32.40 2.29
769 779 2.095053 TGTAAGTGTACGCGCGTGTATA 59.905 45.455 42.78 27.61 32.40 1.47
770 780 2.480224 AAGTGTACGCGCGTGTATAT 57.520 45.000 42.78 23.91 0.00 0.86
771 781 1.750351 AGTGTACGCGCGTGTATATG 58.250 50.000 42.78 9.64 0.00 1.78
772 782 1.331447 AGTGTACGCGCGTGTATATGA 59.669 47.619 42.78 20.80 0.00 2.15
773 783 1.707117 GTGTACGCGCGTGTATATGAG 59.293 52.381 42.78 7.98 0.00 2.90
774 784 1.324718 GTACGCGCGTGTATATGAGG 58.675 55.000 42.78 7.39 0.00 3.86
775 785 0.239082 TACGCGCGTGTATATGAGGG 59.761 55.000 42.78 7.16 0.00 4.30
776 786 2.372690 CGCGCGTGTATATGAGGGC 61.373 63.158 24.19 4.17 38.86 5.19
777 787 1.006102 GCGCGTGTATATGAGGGCT 60.006 57.895 8.43 0.00 39.10 5.19
778 788 0.600255 GCGCGTGTATATGAGGGCTT 60.600 55.000 8.43 0.00 39.10 4.35
779 789 1.139989 CGCGTGTATATGAGGGCTTG 58.860 55.000 0.00 0.00 0.00 4.01
780 790 1.538204 CGCGTGTATATGAGGGCTTGT 60.538 52.381 0.00 0.00 0.00 3.16
781 791 1.867233 GCGTGTATATGAGGGCTTGTG 59.133 52.381 0.00 0.00 0.00 3.33
782 792 2.741878 GCGTGTATATGAGGGCTTGTGT 60.742 50.000 0.00 0.00 0.00 3.72
783 793 3.123804 CGTGTATATGAGGGCTTGTGTC 58.876 50.000 0.00 0.00 0.00 3.67
784 794 3.181475 CGTGTATATGAGGGCTTGTGTCT 60.181 47.826 0.00 0.00 0.00 3.41
785 795 4.122776 GTGTATATGAGGGCTTGTGTCTG 58.877 47.826 0.00 0.00 0.00 3.51
786 796 3.774766 TGTATATGAGGGCTTGTGTCTGT 59.225 43.478 0.00 0.00 0.00 3.41
787 797 4.959839 TGTATATGAGGGCTTGTGTCTGTA 59.040 41.667 0.00 0.00 0.00 2.74
788 798 2.770164 ATGAGGGCTTGTGTCTGTAC 57.230 50.000 0.00 0.00 0.00 2.90
789 799 1.717032 TGAGGGCTTGTGTCTGTACT 58.283 50.000 0.00 0.00 0.00 2.73
790 800 1.344438 TGAGGGCTTGTGTCTGTACTG 59.656 52.381 0.00 0.00 0.00 2.74
791 801 1.618837 GAGGGCTTGTGTCTGTACTGA 59.381 52.381 0.00 0.00 0.00 3.41
792 802 2.234908 GAGGGCTTGTGTCTGTACTGAT 59.765 50.000 5.69 0.00 0.00 2.90
793 803 2.027745 AGGGCTTGTGTCTGTACTGATG 60.028 50.000 5.69 0.00 0.00 3.07
794 804 2.289694 GGGCTTGTGTCTGTACTGATGT 60.290 50.000 5.69 0.00 0.00 3.06
795 805 3.403038 GGCTTGTGTCTGTACTGATGTT 58.597 45.455 5.69 0.00 0.00 2.71
796 806 4.562757 GGGCTTGTGTCTGTACTGATGTTA 60.563 45.833 5.69 0.00 0.00 2.41
797 807 4.994852 GGCTTGTGTCTGTACTGATGTTAA 59.005 41.667 5.69 0.07 0.00 2.01
798 808 5.468746 GGCTTGTGTCTGTACTGATGTTAAA 59.531 40.000 5.69 0.00 0.00 1.52
799 809 6.017440 GGCTTGTGTCTGTACTGATGTTAAAA 60.017 38.462 5.69 0.00 0.00 1.52
800 810 7.414436 GCTTGTGTCTGTACTGATGTTAAAAA 58.586 34.615 5.69 0.00 0.00 1.94
818 828 1.552578 AAAAATACCCGACCCCTTGC 58.447 50.000 0.00 0.00 0.00 4.01
819 829 0.406361 AAAATACCCGACCCCTTGCA 59.594 50.000 0.00 0.00 0.00 4.08
820 830 0.629058 AAATACCCGACCCCTTGCAT 59.371 50.000 0.00 0.00 0.00 3.96
821 831 0.106719 AATACCCGACCCCTTGCATG 60.107 55.000 0.00 0.00 0.00 4.06
822 832 0.986019 ATACCCGACCCCTTGCATGA 60.986 55.000 0.00 0.00 0.00 3.07
823 833 1.202099 TACCCGACCCCTTGCATGAA 61.202 55.000 0.00 0.00 0.00 2.57
824 834 1.750399 CCCGACCCCTTGCATGAAG 60.750 63.158 0.00 0.00 0.00 3.02
825 835 1.299648 CCGACCCCTTGCATGAAGA 59.700 57.895 0.00 0.00 32.82 2.87
847 857 7.856145 AGAGTTCGCTATCTCAAAAATCAAT 57.144 32.000 0.00 0.00 33.63 2.57
926 944 1.657822 CAGGATCGACTCTCGTCTCA 58.342 55.000 0.00 0.00 41.35 3.27
934 952 6.018098 GGATCGACTCTCGTCTCACTTTATTA 60.018 42.308 0.00 0.00 41.35 0.98
935 953 6.347270 TCGACTCTCGTCTCACTTTATTAG 57.653 41.667 0.00 0.00 41.35 1.73
937 955 5.064962 CGACTCTCGTCTCACTTTATTAGGT 59.935 44.000 0.00 0.00 38.03 3.08
938 956 6.197364 ACTCTCGTCTCACTTTATTAGGTG 57.803 41.667 0.00 0.00 35.06 4.00
939 957 4.995124 TCTCGTCTCACTTTATTAGGTGC 58.005 43.478 0.00 0.00 33.91 5.01
940 958 3.766151 TCGTCTCACTTTATTAGGTGCG 58.234 45.455 0.00 0.00 33.91 5.34
941 959 2.858344 CGTCTCACTTTATTAGGTGCGG 59.142 50.000 0.00 0.00 33.91 5.69
942 960 2.608090 GTCTCACTTTATTAGGTGCGGC 59.392 50.000 0.00 0.00 33.91 6.53
960 978 3.914984 CCTATGGCACGGGATGTAG 57.085 57.895 0.00 0.00 0.00 2.74
961 979 0.320771 CCTATGGCACGGGATGTAGC 60.321 60.000 0.00 0.00 0.00 3.58
962 980 0.392706 CTATGGCACGGGATGTAGCA 59.607 55.000 0.00 0.00 0.00 3.49
963 981 0.392706 TATGGCACGGGATGTAGCAG 59.607 55.000 0.00 0.00 0.00 4.24
964 982 1.337384 ATGGCACGGGATGTAGCAGA 61.337 55.000 0.00 0.00 0.00 4.26
965 983 1.521681 GGCACGGGATGTAGCAGAC 60.522 63.158 0.00 0.00 0.00 3.51
967 985 0.744874 GCACGGGATGTAGCAGACTA 59.255 55.000 0.00 0.00 0.00 2.59
977 995 3.512033 GTAGCAGACTACTCACCTTGG 57.488 52.381 0.00 0.00 44.61 3.61
978 996 2.016905 AGCAGACTACTCACCTTGGT 57.983 50.000 0.00 0.00 0.00 3.67
979 997 1.896465 AGCAGACTACTCACCTTGGTC 59.104 52.381 0.00 0.00 0.00 4.02
980 998 1.402984 GCAGACTACTCACCTTGGTCG 60.403 57.143 0.00 0.00 32.86 4.79
981 999 2.160205 CAGACTACTCACCTTGGTCGA 58.840 52.381 0.00 0.00 32.86 4.20
982 1000 2.095161 CAGACTACTCACCTTGGTCGAC 60.095 54.545 7.13 7.13 32.86 4.20
983 1001 2.161030 GACTACTCACCTTGGTCGACT 58.839 52.381 16.46 0.00 0.00 4.18
1066 1084 1.497278 CTTGCGTTCGGTCACATGG 59.503 57.895 0.00 0.00 0.00 3.66
1200 1218 2.440796 CTACCGCTCCCCCACGTA 60.441 66.667 0.00 0.00 0.00 3.57
1471 1530 3.751246 CGACGGCCGTTGACCCTA 61.751 66.667 37.46 0.00 0.00 3.53
1536 1615 0.033781 GCTGCAAGATGGTGGCAAAA 59.966 50.000 0.00 0.00 37.06 2.44
1646 1772 1.893786 CTCTGAGGTCCAACGGAGG 59.106 63.158 13.78 0.00 36.30 4.30
1647 1773 2.232298 CTCTGAGGTCCAACGGAGGC 62.232 65.000 13.78 0.00 36.30 4.70
1654 1780 4.351938 CCAACGGAGGCGACGACA 62.352 66.667 2.19 0.00 34.93 4.35
1757 1883 0.248825 CTAGTGCACGAGCTAGCCAG 60.249 60.000 14.24 8.38 42.74 4.85
2097 2647 4.333926 GGAAAGGATGGATCGTCTTTTGAG 59.666 45.833 10.27 0.00 30.71 3.02
2163 2713 1.839424 AAGGTAGATGTGCCTTTGCC 58.161 50.000 6.40 0.00 45.93 4.52
2228 2778 0.317854 CATGAGCGCTGCATTGATGG 60.318 55.000 18.48 2.37 0.00 3.51
2242 2792 2.519771 TGATGGCTTCCTTCAGCAAT 57.480 45.000 0.00 0.00 42.10 3.56
2256 2806 6.876789 TCCTTCAGCAATTACGATTCTACAAA 59.123 34.615 0.00 0.00 0.00 2.83
2270 2820 2.516923 CTACAAAGAGTAGTGACGGCG 58.483 52.381 4.80 4.80 44.24 6.46
2271 2821 0.666577 ACAAAGAGTAGTGACGGCGC 60.667 55.000 6.90 0.00 0.00 6.53
2272 2822 1.443872 AAAGAGTAGTGACGGCGCG 60.444 57.895 6.90 0.00 0.00 6.86
2273 2823 2.138656 AAAGAGTAGTGACGGCGCGT 62.139 55.000 6.90 2.29 45.10 6.01
2274 2824 2.126580 GAGTAGTGACGGCGCGTT 60.127 61.111 6.90 0.00 41.37 4.84
2275 2825 2.126580 AGTAGTGACGGCGCGTTC 60.127 61.111 6.90 0.00 41.37 3.95
2276 2826 2.126580 GTAGTGACGGCGCGTTCT 60.127 61.111 6.90 8.43 41.37 3.01
2277 2827 1.731969 GTAGTGACGGCGCGTTCTT 60.732 57.895 6.90 0.00 41.37 2.52
2278 2828 1.007038 TAGTGACGGCGCGTTCTTT 60.007 52.632 6.90 0.00 41.37 2.52
2279 2829 0.598158 TAGTGACGGCGCGTTCTTTT 60.598 50.000 6.90 0.00 41.37 2.27
2280 2830 1.438222 GTGACGGCGCGTTCTTTTC 60.438 57.895 6.90 0.00 41.37 2.29
2281 2831 1.593209 TGACGGCGCGTTCTTTTCT 60.593 52.632 6.90 0.00 41.37 2.52
2282 2832 1.154654 GACGGCGCGTTCTTTTCTG 60.155 57.895 6.90 0.00 41.37 3.02
2283 2833 1.554042 GACGGCGCGTTCTTTTCTGA 61.554 55.000 6.90 0.00 41.37 3.27
2284 2834 0.949105 ACGGCGCGTTCTTTTCTGAT 60.949 50.000 6.90 0.00 36.35 2.90
2285 2835 0.996462 CGGCGCGTTCTTTTCTGATA 59.004 50.000 8.43 0.00 0.00 2.15
2286 2836 1.005975 CGGCGCGTTCTTTTCTGATAG 60.006 52.381 8.43 0.00 0.00 2.08
2287 2837 1.267582 GGCGCGTTCTTTTCTGATAGC 60.268 52.381 8.43 0.00 0.00 2.97
2288 2838 1.267582 GCGCGTTCTTTTCTGATAGCC 60.268 52.381 8.43 0.00 0.00 3.93
2289 2839 1.005975 CGCGTTCTTTTCTGATAGCCG 60.006 52.381 0.00 0.00 0.00 5.52
2290 2840 1.327764 GCGTTCTTTTCTGATAGCCGG 59.672 52.381 0.00 0.00 0.00 6.13
2291 2841 1.327764 CGTTCTTTTCTGATAGCCGGC 59.672 52.381 21.89 21.89 0.00 6.13
2292 2842 1.671328 GTTCTTTTCTGATAGCCGGCC 59.329 52.381 26.15 8.84 0.00 6.13
2293 2843 0.180406 TCTTTTCTGATAGCCGGCCC 59.820 55.000 26.15 13.78 0.00 5.80
2294 2844 0.181350 CTTTTCTGATAGCCGGCCCT 59.819 55.000 26.15 11.18 0.00 5.19
2295 2845 1.416401 CTTTTCTGATAGCCGGCCCTA 59.584 52.381 26.15 10.92 0.00 3.53
2296 2846 1.729586 TTTCTGATAGCCGGCCCTAT 58.270 50.000 26.15 16.03 0.00 2.57
2297 2847 1.729586 TTCTGATAGCCGGCCCTATT 58.270 50.000 26.15 6.59 0.00 1.73
2298 2848 1.267121 TCTGATAGCCGGCCCTATTC 58.733 55.000 26.15 13.49 0.00 1.75
2299 2849 0.976641 CTGATAGCCGGCCCTATTCA 59.023 55.000 26.15 17.35 0.00 2.57
2300 2850 1.347707 CTGATAGCCGGCCCTATTCAA 59.652 52.381 26.15 4.84 0.00 2.69
2301 2851 1.347707 TGATAGCCGGCCCTATTCAAG 59.652 52.381 26.15 0.00 0.00 3.02
2302 2852 1.623811 GATAGCCGGCCCTATTCAAGA 59.376 52.381 26.15 0.00 0.00 3.02
2303 2853 1.502690 TAGCCGGCCCTATTCAAGAA 58.497 50.000 26.15 0.00 0.00 2.52
2304 2854 0.181350 AGCCGGCCCTATTCAAGAAG 59.819 55.000 26.15 0.00 0.00 2.85
2305 2855 0.819666 GCCGGCCCTATTCAAGAAGG 60.820 60.000 18.11 0.00 0.00 3.46
2313 2863 5.548181 CCCTATTCAAGAAGGGTACTACC 57.452 47.826 0.00 0.00 46.45 3.18
2314 2864 4.038883 CCCTATTCAAGAAGGGTACTACCG 59.961 50.000 0.00 0.00 46.45 4.02
2315 2865 4.038883 CCTATTCAAGAAGGGTACTACCGG 59.961 50.000 0.00 0.00 39.83 5.28
2316 2866 1.856629 TCAAGAAGGGTACTACCGGG 58.143 55.000 6.32 0.00 39.83 5.73
2317 2867 1.077663 TCAAGAAGGGTACTACCGGGT 59.922 52.381 6.32 4.46 39.83 5.28
2318 2868 1.479730 CAAGAAGGGTACTACCGGGTC 59.520 57.143 6.32 0.00 39.83 4.46
2319 2869 0.706433 AGAAGGGTACTACCGGGTCA 59.294 55.000 6.32 0.00 39.83 4.02
2320 2870 1.290130 AGAAGGGTACTACCGGGTCAT 59.710 52.381 6.32 0.00 39.83 3.06
2321 2871 2.515429 AGAAGGGTACTACCGGGTCATA 59.485 50.000 6.32 0.00 39.83 2.15
2322 2872 3.141649 AGAAGGGTACTACCGGGTCATAT 59.858 47.826 6.32 0.00 39.83 1.78
2323 2873 4.354987 AGAAGGGTACTACCGGGTCATATA 59.645 45.833 6.32 0.00 39.83 0.86
2324 2874 4.747265 AGGGTACTACCGGGTCATATAA 57.253 45.455 6.32 0.00 39.83 0.98
2325 2875 4.411013 AGGGTACTACCGGGTCATATAAC 58.589 47.826 6.32 0.00 39.83 1.89
2326 2876 4.140947 AGGGTACTACCGGGTCATATAACA 60.141 45.833 6.32 0.00 39.83 2.41
2327 2877 4.588528 GGGTACTACCGGGTCATATAACAA 59.411 45.833 6.32 0.00 39.83 2.83
2328 2878 5.509670 GGGTACTACCGGGTCATATAACAAC 60.510 48.000 6.32 0.00 39.83 3.32
2329 2879 5.068987 GGTACTACCGGGTCATATAACAACA 59.931 44.000 6.32 0.00 0.00 3.33
2330 2880 5.680594 ACTACCGGGTCATATAACAACAA 57.319 39.130 6.32 0.00 0.00 2.83
2331 2881 6.052405 ACTACCGGGTCATATAACAACAAA 57.948 37.500 6.32 0.00 0.00 2.83
2332 2882 6.474630 ACTACCGGGTCATATAACAACAAAA 58.525 36.000 6.32 0.00 0.00 2.44
2333 2883 7.114095 ACTACCGGGTCATATAACAACAAAAT 58.886 34.615 6.32 0.00 0.00 1.82
2334 2884 8.266473 ACTACCGGGTCATATAACAACAAAATA 58.734 33.333 6.32 0.00 0.00 1.40
2335 2885 7.941431 ACCGGGTCATATAACAACAAAATAA 57.059 32.000 6.32 0.00 0.00 1.40
2336 2886 8.350852 ACCGGGTCATATAACAACAAAATAAA 57.649 30.769 6.32 0.00 0.00 1.40
2337 2887 8.804204 ACCGGGTCATATAACAACAAAATAAAA 58.196 29.630 6.32 0.00 0.00 1.52
2338 2888 9.810545 CCGGGTCATATAACAACAAAATAAAAT 57.189 29.630 0.00 0.00 0.00 1.82
2349 2899 9.539825 AACAACAAAATAAAATGTGCTGTATCA 57.460 25.926 0.00 0.00 0.00 2.15
2350 2900 8.977505 ACAACAAAATAAAATGTGCTGTATCAC 58.022 29.630 0.00 0.00 37.48 3.06
2351 2901 8.434661 CAACAAAATAAAATGTGCTGTATCACC 58.565 33.333 0.00 0.00 36.17 4.02
2352 2902 6.806249 ACAAAATAAAATGTGCTGTATCACCG 59.194 34.615 0.00 0.00 36.17 4.94
2353 2903 6.509418 AAATAAAATGTGCTGTATCACCGT 57.491 33.333 0.00 0.00 36.17 4.83
2354 2904 7.618502 AAATAAAATGTGCTGTATCACCGTA 57.381 32.000 0.00 0.00 36.17 4.02
2355 2905 7.801716 AATAAAATGTGCTGTATCACCGTAT 57.198 32.000 0.00 0.00 36.17 3.06
2356 2906 5.734855 AAAATGTGCTGTATCACCGTATC 57.265 39.130 0.00 0.00 36.17 2.24
2357 2907 2.485266 TGTGCTGTATCACCGTATCG 57.515 50.000 0.00 0.00 36.17 2.92
2358 2908 1.746787 TGTGCTGTATCACCGTATCGT 59.253 47.619 0.00 0.00 36.17 3.73
2359 2909 2.164827 TGTGCTGTATCACCGTATCGTT 59.835 45.455 0.00 0.00 36.17 3.85
2360 2910 3.377798 TGTGCTGTATCACCGTATCGTTA 59.622 43.478 0.00 0.00 36.17 3.18
2361 2911 4.037089 TGTGCTGTATCACCGTATCGTTAT 59.963 41.667 0.00 0.00 36.17 1.89
2362 2912 4.615961 GTGCTGTATCACCGTATCGTTATC 59.384 45.833 0.00 0.00 0.00 1.75
2363 2913 4.164294 GCTGTATCACCGTATCGTTATCC 58.836 47.826 0.00 0.00 0.00 2.59
2364 2914 4.082895 GCTGTATCACCGTATCGTTATCCT 60.083 45.833 0.00 0.00 0.00 3.24
2365 2915 5.122869 GCTGTATCACCGTATCGTTATCCTA 59.877 44.000 0.00 0.00 0.00 2.94
2366 2916 6.183360 GCTGTATCACCGTATCGTTATCCTAT 60.183 42.308 0.00 0.00 0.00 2.57
2367 2917 7.080353 TGTATCACCGTATCGTTATCCTATG 57.920 40.000 0.00 0.00 0.00 2.23
2368 2918 6.880529 TGTATCACCGTATCGTTATCCTATGA 59.119 38.462 0.00 0.00 0.00 2.15
2369 2919 7.555195 TGTATCACCGTATCGTTATCCTATGAT 59.445 37.037 0.00 0.00 34.87 2.45
2370 2920 6.829229 TCACCGTATCGTTATCCTATGATT 57.171 37.500 0.00 0.00 32.18 2.57
2371 2921 7.223260 TCACCGTATCGTTATCCTATGATTT 57.777 36.000 0.00 0.00 32.18 2.17
2372 2922 7.663827 TCACCGTATCGTTATCCTATGATTTT 58.336 34.615 0.00 0.00 32.18 1.82
2373 2923 7.811236 TCACCGTATCGTTATCCTATGATTTTC 59.189 37.037 0.00 0.00 32.18 2.29
2374 2924 7.597369 CACCGTATCGTTATCCTATGATTTTCA 59.403 37.037 0.00 0.00 32.18 2.69
2375 2925 7.597743 ACCGTATCGTTATCCTATGATTTTCAC 59.402 37.037 0.00 0.00 32.18 3.18
2376 2926 7.813148 CCGTATCGTTATCCTATGATTTTCACT 59.187 37.037 0.00 0.00 32.18 3.41
2377 2927 9.193133 CGTATCGTTATCCTATGATTTTCACTT 57.807 33.333 0.00 0.00 32.18 3.16
2380 2930 9.784531 ATCGTTATCCTATGATTTTCACTTGAT 57.215 29.630 0.00 0.00 32.18 2.57
2381 2931 9.261180 TCGTTATCCTATGATTTTCACTTGATC 57.739 33.333 0.00 0.00 32.18 2.92
2382 2932 9.045223 CGTTATCCTATGATTTTCACTTGATCA 57.955 33.333 0.00 0.00 34.61 2.92
2386 2936 9.636789 ATCCTATGATTTTCACTTGATCATTCA 57.363 29.630 0.00 0.00 40.14 2.57
2387 2937 9.636789 TCCTATGATTTTCACTTGATCATTCAT 57.363 29.630 0.00 0.00 40.14 2.57
2388 2938 9.678941 CCTATGATTTTCACTTGATCATTCATG 57.321 33.333 0.00 0.00 40.14 3.07
2391 2941 8.113173 TGATTTTCACTTGATCATTCATGTCA 57.887 30.769 0.00 0.00 37.96 3.58
2392 2942 8.578151 TGATTTTCACTTGATCATTCATGTCAA 58.422 29.630 0.00 0.00 37.96 3.18
2393 2943 9.582431 GATTTTCACTTGATCATTCATGTCAAT 57.418 29.630 0.00 0.00 37.96 2.57
2468 3018 7.770366 AAATAAAAACAATTACTCCCTCCGT 57.230 32.000 0.00 0.00 0.00 4.69
2469 3019 7.770366 AATAAAAACAATTACTCCCTCCGTT 57.230 32.000 0.00 0.00 0.00 4.44
2470 3020 5.700722 AAAAACAATTACTCCCTCCGTTC 57.299 39.130 0.00 0.00 0.00 3.95
2471 3021 3.345508 AACAATTACTCCCTCCGTTCC 57.654 47.619 0.00 0.00 0.00 3.62
2472 3022 2.262637 ACAATTACTCCCTCCGTTCCA 58.737 47.619 0.00 0.00 0.00 3.53
2473 3023 2.844348 ACAATTACTCCCTCCGTTCCAT 59.156 45.455 0.00 0.00 0.00 3.41
2474 3024 4.035112 ACAATTACTCCCTCCGTTCCATA 58.965 43.478 0.00 0.00 0.00 2.74
2475 3025 4.472108 ACAATTACTCCCTCCGTTCCATAA 59.528 41.667 0.00 0.00 0.00 1.90
2476 3026 5.132144 ACAATTACTCCCTCCGTTCCATAAT 59.868 40.000 0.00 0.00 0.00 1.28
2477 3027 4.682778 TTACTCCCTCCGTTCCATAATG 57.317 45.455 0.00 0.00 0.00 1.90
2478 3028 2.478292 ACTCCCTCCGTTCCATAATGT 58.522 47.619 0.00 0.00 0.00 2.71
2479 3029 3.649843 ACTCCCTCCGTTCCATAATGTA 58.350 45.455 0.00 0.00 0.00 2.29
2480 3030 4.035112 ACTCCCTCCGTTCCATAATGTAA 58.965 43.478 0.00 0.00 0.00 2.41
2481 3031 4.101119 ACTCCCTCCGTTCCATAATGTAAG 59.899 45.833 0.00 0.00 0.00 2.34
2482 3032 4.291792 TCCCTCCGTTCCATAATGTAAGA 58.708 43.478 0.00 0.00 0.00 2.10
2483 3033 4.100498 TCCCTCCGTTCCATAATGTAAGAC 59.900 45.833 0.00 0.00 0.00 3.01
2484 3034 4.049186 CCTCCGTTCCATAATGTAAGACG 58.951 47.826 0.00 0.00 0.00 4.18
2485 3035 4.441079 CCTCCGTTCCATAATGTAAGACGT 60.441 45.833 0.00 0.00 0.00 4.34
2486 3036 5.075858 TCCGTTCCATAATGTAAGACGTT 57.924 39.130 0.00 0.00 0.00 3.99
2487 3037 5.481105 TCCGTTCCATAATGTAAGACGTTT 58.519 37.500 0.00 0.00 0.00 3.60
2488 3038 5.933463 TCCGTTCCATAATGTAAGACGTTTT 59.067 36.000 0.00 0.00 0.00 2.43
2489 3039 6.427547 TCCGTTCCATAATGTAAGACGTTTTT 59.572 34.615 0.00 0.00 0.00 1.94
2510 3060 7.395190 TTTTTGACATCTGACATTATGGGAG 57.605 36.000 0.00 0.00 0.00 4.30
2511 3061 4.694760 TGACATCTGACATTATGGGAGG 57.305 45.455 0.00 0.00 0.00 4.30
2512 3062 4.297768 TGACATCTGACATTATGGGAGGA 58.702 43.478 0.00 0.00 0.00 3.71
2513 3063 4.346127 TGACATCTGACATTATGGGAGGAG 59.654 45.833 0.00 0.00 0.00 3.69
2514 3064 3.649981 ACATCTGACATTATGGGAGGAGG 59.350 47.826 0.00 0.00 0.00 4.30
2515 3065 2.694397 TCTGACATTATGGGAGGAGGG 58.306 52.381 0.00 0.00 0.00 4.30
2516 3066 2.250008 TCTGACATTATGGGAGGAGGGA 59.750 50.000 0.00 0.00 0.00 4.20
2517 3067 2.636893 CTGACATTATGGGAGGAGGGAG 59.363 54.545 0.00 0.00 0.00 4.30
2518 3068 2.022035 TGACATTATGGGAGGAGGGAGT 60.022 50.000 0.00 0.00 0.00 3.85
2519 3069 3.208922 TGACATTATGGGAGGAGGGAGTA 59.791 47.826 0.00 0.00 0.00 2.59
2520 3070 3.835395 GACATTATGGGAGGAGGGAGTAG 59.165 52.174 0.00 0.00 0.00 2.57
2569 3119 1.483004 TGTTAGCCTATAAGCCGTGCA 59.517 47.619 0.00 0.00 0.00 4.57
2616 3166 2.035155 TCGAAGCCGAGTCTGGGA 59.965 61.111 4.84 0.00 40.30 4.37
2735 3287 2.978018 CTCGAAAAAGCACCCGGCC 61.978 63.158 0.00 0.00 46.50 6.13
2740 3292 0.468400 AAAAAGCACCCGGCCTACAA 60.468 50.000 0.00 0.00 46.50 2.41
2762 3314 1.373497 ACGCTCGGCAAAGACAGAG 60.373 57.895 0.00 0.00 35.29 3.35
3110 3710 9.535878 GTTTTCATGGGTCTTATTTGTAAAACA 57.464 29.630 0.00 0.00 34.73 2.83
3160 3882 0.458025 GACTTTCGACCCCTAGCGTG 60.458 60.000 0.00 0.00 0.00 5.34
3211 3933 4.519730 ACTACTGAAACTTCACTCTACGCT 59.480 41.667 0.00 0.00 32.90 5.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
235 241 2.212794 GAGGAGGAGGAGGTCACCGA 62.213 65.000 0.00 0.00 34.73 4.69
260 266 3.068691 CCGGAGAGGAGTTCGCCA 61.069 66.667 0.00 0.00 45.27 5.69
289 295 4.385825 TGGATCTTGTACGTTCTTTTGCT 58.614 39.130 0.00 0.00 0.00 3.91
525 533 2.299013 CGCCATTAGTATAGGCCACTGA 59.701 50.000 5.01 0.00 45.56 3.41
555 563 2.963101 ACTGGTGCGCCATTAGTATAGA 59.037 45.455 21.54 0.00 45.05 1.98
664 674 2.224042 CCTACTAATGGCGCATCACTGA 60.224 50.000 10.83 0.00 0.00 3.41
727 737 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
731 741 1.508632 ACACCTATGAACGCACACAC 58.491 50.000 0.00 0.00 0.00 3.82
733 743 3.122948 CACTTACACCTATGAACGCACAC 59.877 47.826 0.00 0.00 0.00 3.82
734 744 3.243941 ACACTTACACCTATGAACGCACA 60.244 43.478 0.00 0.00 0.00 4.57
735 745 3.323243 ACACTTACACCTATGAACGCAC 58.677 45.455 0.00 0.00 0.00 5.34
738 748 3.545078 GCGTACACTTACACCTATGAACG 59.455 47.826 0.00 0.00 0.00 3.95
740 750 3.761657 CGCGTACACTTACACCTATGAA 58.238 45.455 0.00 0.00 0.00 2.57
741 751 2.478370 GCGCGTACACTTACACCTATGA 60.478 50.000 8.43 0.00 0.00 2.15
742 752 1.850441 GCGCGTACACTTACACCTATG 59.150 52.381 8.43 0.00 0.00 2.23
743 753 1.532505 CGCGCGTACACTTACACCTAT 60.533 52.381 24.19 0.00 0.00 2.57
745 755 1.443194 CGCGCGTACACTTACACCT 60.443 57.895 24.19 0.00 0.00 4.00
747 757 1.270777 ACACGCGCGTACACTTACAC 61.271 55.000 37.24 0.00 0.00 2.90
748 758 0.236973 TACACGCGCGTACACTTACA 59.763 50.000 37.24 11.26 0.00 2.41
749 759 1.538276 ATACACGCGCGTACACTTAC 58.462 50.000 37.24 0.00 0.00 2.34
750 760 3.002144 TCATATACACGCGCGTACACTTA 59.998 43.478 37.24 21.53 0.00 2.24
751 761 2.114056 CATATACACGCGCGTACACTT 58.886 47.619 37.24 20.09 0.00 3.16
752 762 1.331447 TCATATACACGCGCGTACACT 59.669 47.619 37.24 21.72 0.00 3.55
753 763 1.707117 CTCATATACACGCGCGTACAC 59.293 52.381 37.24 0.00 0.00 2.90
754 764 1.334329 CCTCATATACACGCGCGTACA 60.334 52.381 37.24 25.85 0.00 2.90
755 765 1.324718 CCTCATATACACGCGCGTAC 58.675 55.000 37.24 0.00 0.00 3.67
756 766 0.239082 CCCTCATATACACGCGCGTA 59.761 55.000 37.24 22.76 0.00 4.42
757 767 1.007734 CCCTCATATACACGCGCGT 60.008 57.895 32.73 32.73 0.00 6.01
758 768 2.372690 GCCCTCATATACACGCGCG 61.373 63.158 30.96 30.96 0.00 6.86
759 769 0.600255 AAGCCCTCATATACACGCGC 60.600 55.000 5.73 0.00 0.00 6.86
760 770 1.139989 CAAGCCCTCATATACACGCG 58.860 55.000 3.53 3.53 0.00 6.01
761 771 1.867233 CACAAGCCCTCATATACACGC 59.133 52.381 0.00 0.00 0.00 5.34
762 772 3.123804 GACACAAGCCCTCATATACACG 58.876 50.000 0.00 0.00 0.00 4.49
763 773 4.122776 CAGACACAAGCCCTCATATACAC 58.877 47.826 0.00 0.00 0.00 2.90
764 774 3.774766 ACAGACACAAGCCCTCATATACA 59.225 43.478 0.00 0.00 0.00 2.29
765 775 4.408182 ACAGACACAAGCCCTCATATAC 57.592 45.455 0.00 0.00 0.00 1.47
766 776 5.069119 CAGTACAGACACAAGCCCTCATATA 59.931 44.000 0.00 0.00 0.00 0.86
767 777 4.033709 AGTACAGACACAAGCCCTCATAT 58.966 43.478 0.00 0.00 0.00 1.78
768 778 3.195610 CAGTACAGACACAAGCCCTCATA 59.804 47.826 0.00 0.00 0.00 2.15
769 779 2.027745 CAGTACAGACACAAGCCCTCAT 60.028 50.000 0.00 0.00 0.00 2.90
770 780 1.344438 CAGTACAGACACAAGCCCTCA 59.656 52.381 0.00 0.00 0.00 3.86
771 781 1.618837 TCAGTACAGACACAAGCCCTC 59.381 52.381 0.00 0.00 0.00 4.30
772 782 1.717032 TCAGTACAGACACAAGCCCT 58.283 50.000 0.00 0.00 0.00 5.19
773 783 2.289694 ACATCAGTACAGACACAAGCCC 60.290 50.000 0.00 0.00 0.00 5.19
774 784 3.045601 ACATCAGTACAGACACAAGCC 57.954 47.619 0.00 0.00 0.00 4.35
775 785 6.539649 TTTAACATCAGTACAGACACAAGC 57.460 37.500 0.00 0.00 0.00 4.01
799 809 1.203075 TGCAAGGGGTCGGGTATTTTT 60.203 47.619 0.00 0.00 0.00 1.94
800 810 0.406361 TGCAAGGGGTCGGGTATTTT 59.594 50.000 0.00 0.00 0.00 1.82
801 811 0.629058 ATGCAAGGGGTCGGGTATTT 59.371 50.000 0.00 0.00 0.00 1.40
802 812 0.106719 CATGCAAGGGGTCGGGTATT 60.107 55.000 0.00 0.00 0.00 1.89
803 813 0.986019 TCATGCAAGGGGTCGGGTAT 60.986 55.000 0.00 0.00 0.00 2.73
804 814 1.202099 TTCATGCAAGGGGTCGGGTA 61.202 55.000 0.00 0.00 0.00 3.69
805 815 2.484287 CTTCATGCAAGGGGTCGGGT 62.484 60.000 0.00 0.00 0.00 5.28
806 816 1.750399 CTTCATGCAAGGGGTCGGG 60.750 63.158 0.00 0.00 0.00 5.14
807 817 0.745845 CTCTTCATGCAAGGGGTCGG 60.746 60.000 0.00 0.00 32.22 4.79
808 818 0.036010 ACTCTTCATGCAAGGGGTCG 60.036 55.000 0.00 0.00 36.81 4.79
809 819 2.087646 GAACTCTTCATGCAAGGGGTC 58.912 52.381 6.95 6.95 42.35 4.46
810 820 1.611673 CGAACTCTTCATGCAAGGGGT 60.612 52.381 0.00 3.16 33.83 4.95
811 821 1.089920 CGAACTCTTCATGCAAGGGG 58.910 55.000 0.00 4.56 36.81 4.79
812 822 0.449388 GCGAACTCTTCATGCAAGGG 59.551 55.000 0.00 3.96 38.77 3.95
813 823 1.446907 AGCGAACTCTTCATGCAAGG 58.553 50.000 0.00 0.00 32.22 3.61
814 824 4.118410 AGATAGCGAACTCTTCATGCAAG 58.882 43.478 0.00 0.00 0.00 4.01
815 825 4.115516 GAGATAGCGAACTCTTCATGCAA 58.884 43.478 0.00 0.00 0.00 4.08
816 826 3.131046 TGAGATAGCGAACTCTTCATGCA 59.869 43.478 5.74 0.00 34.65 3.96
817 827 3.711086 TGAGATAGCGAACTCTTCATGC 58.289 45.455 5.74 0.00 34.65 4.06
818 828 6.653273 TTTTGAGATAGCGAACTCTTCATG 57.347 37.500 5.74 0.00 34.65 3.07
819 829 7.550551 TGATTTTTGAGATAGCGAACTCTTCAT 59.449 33.333 5.74 0.00 34.65 2.57
820 830 6.873605 TGATTTTTGAGATAGCGAACTCTTCA 59.126 34.615 5.74 0.00 34.65 3.02
821 831 7.295952 TGATTTTTGAGATAGCGAACTCTTC 57.704 36.000 5.74 0.00 34.65 2.87
822 832 7.672983 TTGATTTTTGAGATAGCGAACTCTT 57.327 32.000 5.74 0.00 34.65 2.85
823 833 7.550551 TGATTGATTTTTGAGATAGCGAACTCT 59.449 33.333 5.74 0.00 34.65 3.24
824 834 7.688372 TGATTGATTTTTGAGATAGCGAACTC 58.312 34.615 0.00 0.00 0.00 3.01
825 835 7.615582 TGATTGATTTTTGAGATAGCGAACT 57.384 32.000 0.00 0.00 0.00 3.01
847 857 7.147811 ACCTACTAAAAATGGTTTTGTTGCTGA 60.148 33.333 0.00 0.00 37.51 4.26
885 895 3.899981 ATCGTGGAGCCGCTTGCAA 62.900 57.895 0.00 0.00 44.83 4.08
890 900 4.148825 GGTCATCGTGGAGCCGCT 62.149 66.667 0.00 0.00 0.00 5.52
942 960 0.320771 GCTACATCCCGTGCCATAGG 60.321 60.000 0.00 0.00 0.00 2.57
944 962 0.392706 CTGCTACATCCCGTGCCATA 59.607 55.000 0.00 0.00 0.00 2.74
945 963 1.146930 CTGCTACATCCCGTGCCAT 59.853 57.895 0.00 0.00 0.00 4.40
946 964 1.987306 TCTGCTACATCCCGTGCCA 60.987 57.895 0.00 0.00 0.00 4.92
947 965 1.521681 GTCTGCTACATCCCGTGCC 60.522 63.158 0.00 0.00 0.00 5.01
948 966 0.744874 TAGTCTGCTACATCCCGTGC 59.255 55.000 0.00 0.00 0.00 5.34
949 967 2.493713 GTAGTCTGCTACATCCCGTG 57.506 55.000 0.44 0.00 45.18 4.94
960 978 1.402984 CGACCAAGGTGAGTAGTCTGC 60.403 57.143 0.00 0.00 0.00 4.26
961 979 2.095161 GTCGACCAAGGTGAGTAGTCTG 60.095 54.545 3.51 0.00 0.00 3.51
962 980 2.161030 GTCGACCAAGGTGAGTAGTCT 58.839 52.381 3.51 0.00 0.00 3.24
963 981 2.161030 AGTCGACCAAGGTGAGTAGTC 58.839 52.381 13.01 0.00 0.00 2.59
964 982 2.289592 AGTCGACCAAGGTGAGTAGT 57.710 50.000 13.01 0.00 0.00 2.73
965 983 3.662247 AAAGTCGACCAAGGTGAGTAG 57.338 47.619 13.01 0.00 0.00 2.57
967 985 3.493873 GGTTAAAGTCGACCAAGGTGAGT 60.494 47.826 13.01 0.00 35.95 3.41
968 986 3.064931 GGTTAAAGTCGACCAAGGTGAG 58.935 50.000 13.01 0.00 35.95 3.51
969 987 2.224354 GGGTTAAAGTCGACCAAGGTGA 60.224 50.000 13.01 0.00 37.68 4.02
971 989 1.770061 TGGGTTAAAGTCGACCAAGGT 59.230 47.619 13.01 0.00 37.68 3.50
972 990 2.423577 CTGGGTTAAAGTCGACCAAGG 58.576 52.381 13.01 0.00 37.68 3.61
973 991 2.038033 TCCTGGGTTAAAGTCGACCAAG 59.962 50.000 13.01 0.00 36.83 3.61
974 992 2.048601 TCCTGGGTTAAAGTCGACCAA 58.951 47.619 13.01 0.99 37.68 3.67
975 993 1.345415 GTCCTGGGTTAAAGTCGACCA 59.655 52.381 13.01 0.00 37.68 4.02
976 994 1.338484 GGTCCTGGGTTAAAGTCGACC 60.338 57.143 13.01 0.00 35.14 4.79
977 995 1.345415 TGGTCCTGGGTTAAAGTCGAC 59.655 52.381 7.70 7.70 0.00 4.20
978 996 1.621814 CTGGTCCTGGGTTAAAGTCGA 59.378 52.381 0.00 0.00 0.00 4.20
979 997 1.338769 CCTGGTCCTGGGTTAAAGTCG 60.339 57.143 6.91 0.00 0.00 4.18
980 998 1.982958 TCCTGGTCCTGGGTTAAAGTC 59.017 52.381 14.48 0.00 0.00 3.01
981 999 2.127651 TCCTGGTCCTGGGTTAAAGT 57.872 50.000 14.48 0.00 0.00 2.66
982 1000 2.357154 CCATCCTGGTCCTGGGTTAAAG 60.357 54.545 14.48 0.00 31.35 1.85
983 1001 1.638589 CCATCCTGGTCCTGGGTTAAA 59.361 52.381 14.48 0.00 31.35 1.52
1066 1084 1.219393 CAAGCTCGAGGAAGGGGAC 59.781 63.158 15.58 0.00 0.00 4.46
1185 1203 4.371417 TCTACGTGGGGGAGCGGT 62.371 66.667 0.00 0.00 0.00 5.68
1212 1230 4.475135 GTGGCTTCGGCTCCCTCC 62.475 72.222 0.00 0.00 41.44 4.30
1333 1351 0.526211 TGGAAGGTGTCGACGATGAG 59.474 55.000 11.62 0.00 0.00 2.90
1536 1615 4.235762 AACTCCACGCAGCACCGT 62.236 61.111 0.00 0.00 43.11 4.83
1654 1780 4.702081 GAGCCACGACACGAGCGT 62.702 66.667 0.00 0.00 43.67 5.07
1780 1906 3.003173 CAGGGCCCAGAGGAACGA 61.003 66.667 27.56 0.00 33.47 3.85
2160 2710 4.675161 TTCCTGGCATTGGCGGCA 62.675 61.111 7.97 7.97 42.47 5.69
2163 2713 1.213537 CAACTTCCTGGCATTGGCG 59.786 57.895 5.68 0.82 42.47 5.69
2216 2766 0.822164 AAGGAAGCCATCAATGCAGC 59.178 50.000 0.00 0.00 0.00 5.25
2228 2778 4.333926 AGAATCGTAATTGCTGAAGGAAGC 59.666 41.667 0.00 0.00 43.82 3.86
2256 2806 2.524636 GAACGCGCCGTCACTACTCT 62.525 60.000 5.73 0.00 39.99 3.24
2270 2820 1.327764 CCGGCTATCAGAAAAGAACGC 59.672 52.381 0.00 0.00 0.00 4.84
2271 2821 1.327764 GCCGGCTATCAGAAAAGAACG 59.672 52.381 22.15 0.00 0.00 3.95
2272 2822 1.671328 GGCCGGCTATCAGAAAAGAAC 59.329 52.381 28.56 0.00 0.00 3.01
2273 2823 1.408266 GGGCCGGCTATCAGAAAAGAA 60.408 52.381 28.56 0.00 0.00 2.52
2274 2824 0.180406 GGGCCGGCTATCAGAAAAGA 59.820 55.000 28.56 0.00 0.00 2.52
2275 2825 0.181350 AGGGCCGGCTATCAGAAAAG 59.819 55.000 28.56 0.00 0.00 2.27
2276 2826 1.502690 TAGGGCCGGCTATCAGAAAA 58.497 50.000 28.56 0.00 0.00 2.29
2277 2827 1.729586 ATAGGGCCGGCTATCAGAAA 58.270 50.000 28.56 3.78 0.00 2.52
2278 2828 1.623811 GAATAGGGCCGGCTATCAGAA 59.376 52.381 28.56 5.49 0.00 3.02
2279 2829 1.267121 GAATAGGGCCGGCTATCAGA 58.733 55.000 28.56 6.43 0.00 3.27
2280 2830 0.976641 TGAATAGGGCCGGCTATCAG 59.023 55.000 28.56 0.00 0.00 2.90
2281 2831 1.347707 CTTGAATAGGGCCGGCTATCA 59.652 52.381 28.56 19.34 0.00 2.15
2282 2832 1.623811 TCTTGAATAGGGCCGGCTATC 59.376 52.381 28.56 16.24 0.00 2.08
2283 2833 1.729586 TCTTGAATAGGGCCGGCTAT 58.270 50.000 28.56 17.74 0.00 2.97
2284 2834 1.416401 CTTCTTGAATAGGGCCGGCTA 59.584 52.381 28.56 12.74 0.00 3.93
2285 2835 0.181350 CTTCTTGAATAGGGCCGGCT 59.819 55.000 28.56 10.45 0.00 5.52
2286 2836 0.819666 CCTTCTTGAATAGGGCCGGC 60.820 60.000 21.18 21.18 0.00 6.13
2287 2837 0.179018 CCCTTCTTGAATAGGGCCGG 60.179 60.000 0.00 0.00 44.40 6.13
2288 2838 3.403936 CCCTTCTTGAATAGGGCCG 57.596 57.895 0.00 0.00 44.40 6.13
2292 2842 4.038883 CCGGTAGTACCCTTCTTGAATAGG 59.961 50.000 13.90 0.71 33.75 2.57
2293 2843 4.038883 CCCGGTAGTACCCTTCTTGAATAG 59.961 50.000 13.90 0.00 33.75 1.73
2294 2844 3.962718 CCCGGTAGTACCCTTCTTGAATA 59.037 47.826 13.90 0.00 33.75 1.75
2295 2845 2.770232 CCCGGTAGTACCCTTCTTGAAT 59.230 50.000 13.90 0.00 33.75 2.57
2296 2846 2.181975 CCCGGTAGTACCCTTCTTGAA 58.818 52.381 13.90 0.00 33.75 2.69
2297 2847 1.077663 ACCCGGTAGTACCCTTCTTGA 59.922 52.381 13.90 0.00 33.75 3.02
2298 2848 1.479730 GACCCGGTAGTACCCTTCTTG 59.520 57.143 13.90 0.00 33.75 3.02
2299 2849 1.077663 TGACCCGGTAGTACCCTTCTT 59.922 52.381 13.90 0.00 33.75 2.52
2300 2850 0.706433 TGACCCGGTAGTACCCTTCT 59.294 55.000 13.90 0.00 33.75 2.85
2301 2851 1.785647 ATGACCCGGTAGTACCCTTC 58.214 55.000 13.90 7.95 33.75 3.46
2302 2852 3.625252 ATATGACCCGGTAGTACCCTT 57.375 47.619 13.90 0.00 33.75 3.95
2303 2853 4.140947 TGTTATATGACCCGGTAGTACCCT 60.141 45.833 13.90 0.00 33.75 4.34
2304 2854 4.151883 TGTTATATGACCCGGTAGTACCC 58.848 47.826 13.90 0.08 33.75 3.69
2305 2855 5.068987 TGTTGTTATATGACCCGGTAGTACC 59.931 44.000 9.50 9.50 34.05 3.34
2306 2856 6.147864 TGTTGTTATATGACCCGGTAGTAC 57.852 41.667 0.00 0.00 0.00 2.73
2307 2857 6.788598 TTGTTGTTATATGACCCGGTAGTA 57.211 37.500 0.00 0.00 0.00 1.82
2308 2858 5.680594 TTGTTGTTATATGACCCGGTAGT 57.319 39.130 0.00 0.00 0.00 2.73
2309 2859 6.988622 TTTTGTTGTTATATGACCCGGTAG 57.011 37.500 0.00 0.00 0.00 3.18
2310 2860 9.458727 TTTATTTTGTTGTTATATGACCCGGTA 57.541 29.630 0.00 0.00 0.00 4.02
2311 2861 7.941431 TTATTTTGTTGTTATATGACCCGGT 57.059 32.000 0.00 0.00 0.00 5.28
2312 2862 9.810545 ATTTTATTTTGTTGTTATATGACCCGG 57.189 29.630 0.00 0.00 0.00 5.73
2323 2873 9.539825 TGATACAGCACATTTTATTTTGTTGTT 57.460 25.926 0.00 0.00 35.39 2.83
2324 2874 8.977505 GTGATACAGCACATTTTATTTTGTTGT 58.022 29.630 0.00 0.00 38.63 3.32
2325 2875 8.434661 GGTGATACAGCACATTTTATTTTGTTG 58.565 33.333 0.00 0.00 40.52 3.33
2326 2876 7.328249 CGGTGATACAGCACATTTTATTTTGTT 59.672 33.333 0.00 0.00 40.52 2.83
2327 2877 6.806249 CGGTGATACAGCACATTTTATTTTGT 59.194 34.615 0.00 0.00 40.52 2.83
2328 2878 6.806249 ACGGTGATACAGCACATTTTATTTTG 59.194 34.615 0.00 0.00 40.52 2.44
2329 2879 6.919721 ACGGTGATACAGCACATTTTATTTT 58.080 32.000 0.00 0.00 40.52 1.82
2330 2880 6.509418 ACGGTGATACAGCACATTTTATTT 57.491 33.333 0.00 0.00 40.52 1.40
2331 2881 7.307160 CGATACGGTGATACAGCACATTTTATT 60.307 37.037 0.00 0.00 40.52 1.40
2332 2882 6.145534 CGATACGGTGATACAGCACATTTTAT 59.854 38.462 0.00 0.00 40.52 1.40
2333 2883 5.460748 CGATACGGTGATACAGCACATTTTA 59.539 40.000 0.00 0.00 40.52 1.52
2334 2884 4.270084 CGATACGGTGATACAGCACATTTT 59.730 41.667 0.00 0.00 40.52 1.82
2335 2885 3.802139 CGATACGGTGATACAGCACATTT 59.198 43.478 0.00 0.00 40.52 2.32
2336 2886 3.181479 ACGATACGGTGATACAGCACATT 60.181 43.478 0.00 0.00 40.52 2.71
2337 2887 2.361119 ACGATACGGTGATACAGCACAT 59.639 45.455 0.00 0.00 40.52 3.21
2338 2888 1.746787 ACGATACGGTGATACAGCACA 59.253 47.619 0.00 0.00 40.52 4.57
2339 2889 2.486951 ACGATACGGTGATACAGCAC 57.513 50.000 0.00 0.00 38.05 4.40
2340 2890 4.320714 GGATAACGATACGGTGATACAGCA 60.321 45.833 0.00 0.00 0.00 4.41
2341 2891 4.082895 AGGATAACGATACGGTGATACAGC 60.083 45.833 0.00 0.00 0.00 4.40
2342 2892 5.624344 AGGATAACGATACGGTGATACAG 57.376 43.478 0.00 0.00 0.00 2.74
2343 2893 6.880529 TCATAGGATAACGATACGGTGATACA 59.119 38.462 0.00 0.00 0.00 2.29
2344 2894 7.312657 TCATAGGATAACGATACGGTGATAC 57.687 40.000 0.00 0.00 0.00 2.24
2345 2895 8.515695 AATCATAGGATAACGATACGGTGATA 57.484 34.615 0.00 0.00 29.74 2.15
2346 2896 7.406031 AATCATAGGATAACGATACGGTGAT 57.594 36.000 0.00 0.00 30.57 3.06
2347 2897 6.829229 AATCATAGGATAACGATACGGTGA 57.171 37.500 0.00 0.00 32.09 4.02
2348 2898 7.597369 TGAAAATCATAGGATAACGATACGGTG 59.403 37.037 0.00 0.00 32.09 4.94
2349 2899 7.597743 GTGAAAATCATAGGATAACGATACGGT 59.402 37.037 0.00 0.00 32.09 4.83
2350 2900 7.813148 AGTGAAAATCATAGGATAACGATACGG 59.187 37.037 0.00 0.00 32.09 4.02
2351 2901 8.744008 AGTGAAAATCATAGGATAACGATACG 57.256 34.615 0.00 0.00 32.09 3.06
2354 2904 9.784531 ATCAAGTGAAAATCATAGGATAACGAT 57.215 29.630 0.00 0.00 32.09 3.73
2355 2905 9.261180 GATCAAGTGAAAATCATAGGATAACGA 57.739 33.333 0.00 0.00 32.09 3.85
2356 2906 9.045223 TGATCAAGTGAAAATCATAGGATAACG 57.955 33.333 0.00 0.00 32.09 3.18
2360 2910 9.636789 TGAATGATCAAGTGAAAATCATAGGAT 57.363 29.630 0.00 0.00 38.78 3.24
2361 2911 9.636789 ATGAATGATCAAGTGAAAATCATAGGA 57.363 29.630 0.00 0.00 38.78 2.94
2362 2912 9.678941 CATGAATGATCAAGTGAAAATCATAGG 57.321 33.333 0.00 0.00 38.78 2.57
2365 2915 8.745590 TGACATGAATGATCAAGTGAAAATCAT 58.254 29.630 0.00 0.00 37.60 2.45
2366 2916 8.113173 TGACATGAATGATCAAGTGAAAATCA 57.887 30.769 0.00 0.00 37.60 2.57
2367 2917 8.975410 TTGACATGAATGATCAAGTGAAAATC 57.025 30.769 0.00 0.00 37.60 2.17
2442 2992 9.299465 ACGGAGGGAGTAATTGTTTTTATTTAA 57.701 29.630 0.00 0.00 0.00 1.52
2443 2993 8.866970 ACGGAGGGAGTAATTGTTTTTATTTA 57.133 30.769 0.00 0.00 0.00 1.40
2444 2994 7.770366 ACGGAGGGAGTAATTGTTTTTATTT 57.230 32.000 0.00 0.00 0.00 1.40
2445 2995 7.094075 GGAACGGAGGGAGTAATTGTTTTTATT 60.094 37.037 0.00 0.00 0.00 1.40
2446 2996 6.376299 GGAACGGAGGGAGTAATTGTTTTTAT 59.624 38.462 0.00 0.00 0.00 1.40
2447 2997 5.706833 GGAACGGAGGGAGTAATTGTTTTTA 59.293 40.000 0.00 0.00 0.00 1.52
2448 2998 4.521639 GGAACGGAGGGAGTAATTGTTTTT 59.478 41.667 0.00 0.00 0.00 1.94
2449 2999 4.077108 GGAACGGAGGGAGTAATTGTTTT 58.923 43.478 0.00 0.00 0.00 2.43
2450 3000 3.073356 TGGAACGGAGGGAGTAATTGTTT 59.927 43.478 0.00 0.00 0.00 2.83
2451 3001 2.640826 TGGAACGGAGGGAGTAATTGTT 59.359 45.455 0.00 0.00 0.00 2.83
2452 3002 2.262637 TGGAACGGAGGGAGTAATTGT 58.737 47.619 0.00 0.00 0.00 2.71
2453 3003 3.560636 ATGGAACGGAGGGAGTAATTG 57.439 47.619 0.00 0.00 0.00 2.32
2454 3004 5.132144 ACATTATGGAACGGAGGGAGTAATT 59.868 40.000 0.00 0.00 0.00 1.40
2455 3005 4.658901 ACATTATGGAACGGAGGGAGTAAT 59.341 41.667 0.00 0.00 0.00 1.89
2456 3006 4.035112 ACATTATGGAACGGAGGGAGTAA 58.965 43.478 0.00 0.00 0.00 2.24
2457 3007 3.649843 ACATTATGGAACGGAGGGAGTA 58.350 45.455 0.00 0.00 0.00 2.59
2458 3008 2.478292 ACATTATGGAACGGAGGGAGT 58.522 47.619 0.00 0.00 0.00 3.85
2459 3009 4.344102 TCTTACATTATGGAACGGAGGGAG 59.656 45.833 0.00 0.00 0.00 4.30
2460 3010 4.100498 GTCTTACATTATGGAACGGAGGGA 59.900 45.833 0.00 0.00 0.00 4.20
2461 3011 4.377897 GTCTTACATTATGGAACGGAGGG 58.622 47.826 0.00 0.00 0.00 4.30
2462 3012 4.049186 CGTCTTACATTATGGAACGGAGG 58.951 47.826 0.00 0.00 0.00 4.30
2463 3013 4.679662 ACGTCTTACATTATGGAACGGAG 58.320 43.478 6.60 0.00 0.00 4.63
2464 3014 4.724074 ACGTCTTACATTATGGAACGGA 57.276 40.909 6.60 0.00 0.00 4.69
2465 3015 5.789710 AAACGTCTTACATTATGGAACGG 57.210 39.130 6.60 0.00 0.00 4.44
2486 3036 6.377996 CCTCCCATAATGTCAGATGTCAAAAA 59.622 38.462 0.00 0.00 0.00 1.94
2487 3037 5.887598 CCTCCCATAATGTCAGATGTCAAAA 59.112 40.000 0.00 0.00 0.00 2.44
2488 3038 5.191522 TCCTCCCATAATGTCAGATGTCAAA 59.808 40.000 0.00 0.00 0.00 2.69
2489 3039 4.721274 TCCTCCCATAATGTCAGATGTCAA 59.279 41.667 0.00 0.00 0.00 3.18
2490 3040 4.297768 TCCTCCCATAATGTCAGATGTCA 58.702 43.478 0.00 0.00 0.00 3.58
2491 3041 4.262808 CCTCCTCCCATAATGTCAGATGTC 60.263 50.000 0.00 0.00 0.00 3.06
2492 3042 3.649981 CCTCCTCCCATAATGTCAGATGT 59.350 47.826 0.00 0.00 0.00 3.06
2493 3043 3.008813 CCCTCCTCCCATAATGTCAGATG 59.991 52.174 0.00 0.00 0.00 2.90
2494 3044 3.116199 TCCCTCCTCCCATAATGTCAGAT 60.116 47.826 0.00 0.00 0.00 2.90
2495 3045 2.250008 TCCCTCCTCCCATAATGTCAGA 59.750 50.000 0.00 0.00 0.00 3.27
2496 3046 2.636893 CTCCCTCCTCCCATAATGTCAG 59.363 54.545 0.00 0.00 0.00 3.51
2497 3047 2.022035 ACTCCCTCCTCCCATAATGTCA 60.022 50.000 0.00 0.00 0.00 3.58
2498 3048 2.695585 ACTCCCTCCTCCCATAATGTC 58.304 52.381 0.00 0.00 0.00 3.06
2499 3049 2.897823 ACTCCCTCCTCCCATAATGT 57.102 50.000 0.00 0.00 0.00 2.71
2500 3050 2.569404 GCTACTCCCTCCTCCCATAATG 59.431 54.545 0.00 0.00 0.00 1.90
2501 3051 2.182312 TGCTACTCCCTCCTCCCATAAT 59.818 50.000 0.00 0.00 0.00 1.28
2502 3052 1.578703 TGCTACTCCCTCCTCCCATAA 59.421 52.381 0.00 0.00 0.00 1.90
2503 3053 1.133136 GTGCTACTCCCTCCTCCCATA 60.133 57.143 0.00 0.00 0.00 2.74
2504 3054 0.399233 GTGCTACTCCCTCCTCCCAT 60.399 60.000 0.00 0.00 0.00 4.00
2505 3055 1.001760 GTGCTACTCCCTCCTCCCA 59.998 63.158 0.00 0.00 0.00 4.37
2506 3056 0.556747 TAGTGCTACTCCCTCCTCCC 59.443 60.000 0.00 0.00 0.00 4.30
2507 3057 1.063867 TGTAGTGCTACTCCCTCCTCC 60.064 57.143 10.28 0.00 37.00 4.30
2508 3058 2.303175 CTGTAGTGCTACTCCCTCCTC 58.697 57.143 10.28 0.00 37.00 3.71
2509 3059 1.063567 CCTGTAGTGCTACTCCCTCCT 60.064 57.143 10.28 0.00 37.00 3.69
2510 3060 1.063867 TCCTGTAGTGCTACTCCCTCC 60.064 57.143 10.28 0.00 37.00 4.30
2511 3061 2.438800 TCCTGTAGTGCTACTCCCTC 57.561 55.000 10.28 0.00 37.00 4.30
2512 3062 2.921834 TTCCTGTAGTGCTACTCCCT 57.078 50.000 10.28 0.00 37.00 4.20
2513 3063 3.975168 TTTTCCTGTAGTGCTACTCCC 57.025 47.619 10.28 0.00 37.00 4.30
2514 3064 4.567159 CGAATTTTCCTGTAGTGCTACTCC 59.433 45.833 10.28 0.00 37.00 3.85
2515 3065 4.567159 CCGAATTTTCCTGTAGTGCTACTC 59.433 45.833 10.28 0.00 37.00 2.59
2516 3066 4.020485 ACCGAATTTTCCTGTAGTGCTACT 60.020 41.667 10.28 0.00 37.00 2.57
2517 3067 4.251268 ACCGAATTTTCCTGTAGTGCTAC 58.749 43.478 2.60 2.60 36.63 3.58
2518 3068 4.546829 ACCGAATTTTCCTGTAGTGCTA 57.453 40.909 0.00 0.00 0.00 3.49
2519 3069 3.418684 ACCGAATTTTCCTGTAGTGCT 57.581 42.857 0.00 0.00 0.00 4.40
2520 3070 4.499037 AAACCGAATTTTCCTGTAGTGC 57.501 40.909 0.00 0.00 0.00 4.40
2613 3163 1.068417 GCCGGGTGTTTTGTTTCCC 59.932 57.895 2.18 0.00 36.82 3.97
2616 3166 1.002087 TGTTTGCCGGGTGTTTTGTTT 59.998 42.857 2.18 0.00 0.00 2.83
2735 3287 1.218875 TTGCCGAGCGTGTGTTGTAG 61.219 55.000 0.00 0.00 0.00 2.74
2740 3292 2.108157 TCTTTGCCGAGCGTGTGT 59.892 55.556 0.00 0.00 0.00 3.72
2762 3314 4.307908 GTTGCGGACACGTGGCAC 62.308 66.667 25.47 15.47 43.45 5.01
3160 3882 7.327761 GCTTTTGCATGTCATCATAATATGGTC 59.672 37.037 0.00 0.00 46.58 4.02
3211 3933 3.413846 AGATGAAGAGCAAAGCACTCA 57.586 42.857 0.00 0.00 36.58 3.41
3240 3962 1.301165 GTTACCGAGTGCCCGTGTT 60.301 57.895 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.