AutoCloner

Multiple sequence alignment - TraesCS7B01G320400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G320400	chr7B	100.000	2820	0	0	1	2820	570910310	570907491	0.000000e+00	5208.0
1	TraesCS7B01G320400	chr7B	85.874	446	21	11	169	588	34836543	34836972	1.200000e-118	436.0
2	TraesCS7B01G320400	chr7B	92.908	141	9	1	1959	2098	34836970	34837110	1.320000e-48	204.0
3	TraesCS7B01G320400	chr7B	86.713	143	15	4	2099	2240	684383530	684383391	3.760000e-34	156.0
4	TraesCS7B01G320400	chrUn	99.015	1117	11	0	982	2098	250752511	250753627	0.000000e+00	2002.0
5	TraesCS7B01G320400	chrUn	99.102	1114	10	0	985	2098	258529196	258528083	0.000000e+00	2002.0
6	TraesCS7B01G320400	chrUn	95.644	1056	27	6	985	2039	19255196	19254159	0.000000e+00	1677.0
7	TraesCS7B01G320400	chrUn	98.350	788	11	2	167	954	250750112	250750897	0.000000e+00	1382.0
8	TraesCS7B01G320400	chrUn	98.230	791	12	2	167	957	258531598	258530810	0.000000e+00	1382.0
9	TraesCS7B01G320400	chrUn	96.532	692	22	2	2131	2820	308001961	308001270	0.000000e+00	1144.0
10	TraesCS7B01G320400	chrUn	97.070	512	13	2	2311	2820	465892129	465892640	0.000000e+00	861.0
11	TraesCS7B01G320400	chrUn	95.787	356	14	1	603	957	19257158	19256803	8.760000e-160	573.0
12	TraesCS7B01G320400	chrUn	97.143	35	1	0	1	35	308002217	308002183	3.030000e-05	60.2
13	TraesCS7B01G320400	chr5A	99.013	1114	10	1	985	2098	674161254	674160142	0.000000e+00	1995.0
14	TraesCS7B01G320400	chr5A	97.051	780	15	3	186	957	674163646	674162867	0.000000e+00	1306.0
15	TraesCS7B01G320400	chr5A	96.266	723	25	2	2099	2820	458928818	458929539	0.000000e+00	1184.0
16	TraesCS7B01G320400	chr5A	95.775	142	6	0	28	169	458928685	458928826	2.190000e-56	230.0
17	TraesCS7B01G320400	chr5A	100.000	42	0	0	169	210	674163673	674163632	8.380000e-11	78.7
18	TraesCS7B01G320400	chr5A	97.143	35	1	0	1	35	458922684	458922718	3.030000e-05	60.2
19	TraesCS7B01G320400	chr4B	97.108	1141	27	5	982	2121	566962431	566963566	0.000000e+00	1919.0
20	TraesCS7B01G320400	chr4B	91.353	798	30	10	180	954	566960037	566960818	0.000000e+00	1055.0
21	TraesCS7B01G320400	chr4B	89.173	508	19	7	257	742	352166312	352166805	4.020000e-168	601.0
22	TraesCS7B01G320400	chr4B	90.338	207	11	1	238	435	646357648	646357442	2.150000e-66	263.0
23	TraesCS7B01G320400	chr4B	96.947	131	4	0	196	326	352166196	352166326	1.320000e-53	220.0
24	TraesCS7B01G320400	chr4B	94.667	75	4	0	520	594	352166552	352166626	1.770000e-22	117.0
25	TraesCS7B01G320400	chr2D	95.183	1121	36	8	982	2098	485033423	485034529	0.000000e+00	1755.0
26	TraesCS7B01G320400	chr2D	91.304	276	16	6	2548	2820	259430605	259430875	1.230000e-98	370.0
27	TraesCS7B01G320400	chr7A	94.821	1120	47	6	986	2098	156238071	156236956	0.000000e+00	1736.0
28	TraesCS7B01G320400	chr7A	95.775	355	14	1	603	957	156240031	156239678	3.150000e-159	571.0
29	TraesCS7B01G320400	chr7A	77.925	453	41	22	186	596	156240585	156240150	7.860000e-56	228.0
30	TraesCS7B01G320400	chr2B	94.661	1105	34	9	982	2081	200530395	200531479	0.000000e+00	1690.0
31	TraesCS7B01G320400	chr2B	93.897	426	13	5	2099	2522	667279037	667278623	5.130000e-177	630.0
32	TraesCS7B01G320400	chr2B	97.746	355	8	0	603	957	691805881	691805527	1.860000e-171	612.0
33	TraesCS7B01G320400	chr2B	97.183	355	10	0	600	954	200528426	200528780	4.020000e-168	601.0
34	TraesCS7B01G320400	chr2B	97.720	307	7	0	2514	2820	667277478	667277172	1.920000e-146	529.0
35	TraesCS7B01G320400	chr2B	86.199	442	22	7	188	591	200527872	200528312	2.580000e-120	442.0
36	TraesCS7B01G320400	chr2B	97.842	139	3	0	31	169	667279167	667279029	1.010000e-59	241.0
37	TraesCS7B01G320400	chr1B	96.126	981	33	4	985	1964	49849953	49848977	0.000000e+00	1596.0
38	TraesCS7B01G320400	chr6B	97.879	330	6	1	186	514	162218278	162217949	1.130000e-158	569.0
39	TraesCS7B01G320400	chr6B	98.413	126	2	0	1973	2098	162217939	162217814	3.660000e-54	222.0
40	TraesCS7B01G320400	chr6D	95.238	357	15	1	600	954	456812416	456812772	5.270000e-157	564.0
41	TraesCS7B01G320400	chr6D	96.032	126	5	0	1973	2098	255019595	255019470	3.680000e-49	206.0
42	TraesCS7B01G320400	chr4A	96.078	306	12	0	2515	2820	666110624	666110929	1.510000e-137	499.0
43	TraesCS7B01G320400	chr4A	94.972	179	9	0	2131	2309	729059475	729059653	5.950000e-72	281.0
44	TraesCS7B01G320400	chr4A	97.143	35	1	0	1	35	729059219	729059253	3.030000e-05	60.2
45	TraesCS7B01G320400	chr7D	90.141	355	27	7	2473	2820	58191180	58191533	3.310000e-124	455.0
46	TraesCS7B01G320400	chr7D	91.336	277	16	6	2548	2820	27362890	27362618	3.430000e-99	372.0
47	TraesCS7B01G320400	chr7D	91.336	277	16	6	2548	2820	180869125	180868853	3.430000e-99	372.0
48	TraesCS7B01G320400	chr7D	83.077	325	38	6	2099	2422	503078159	503078467	2.140000e-71	279.0
49	TraesCS7B01G320400	chr1D	80.488	328	56	8	2099	2424	63072611	63072290	7.800000e-61	244.0
50	TraesCS7B01G320400	chr5B	96.528	144	4	1	453	596	278827714	278827572	1.310000e-58	237.0
51	TraesCS7B01G320400	chr2A	95.238	126	6	0	1973	2098	449272795	449272920	1.710000e-47	200.0
52	TraesCS7B01G320400	chr3A	90.654	107	9	1	2373	2478	638009363	638009257	1.050000e-29	141.0
53	TraesCS7B01G320400	chr3A	88.636	88	10	0	76	163	638009458	638009371	1.070000e-19	108.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G320400	chr7B	570907491	570910310	2819	True	5208.000000	5208	100.000000	1	2820	1	chr7B.!!$R1	2819
1	TraesCS7B01G320400	chr7B	34836543	34837110	567	False	320.000000	436	89.391000	169	2098	2	chr7B.!!$F1	1929
2	TraesCS7B01G320400	chrUn	250750112	250753627	3515	False	1692.000000	2002	98.682500	167	2098	2	chrUn.!!$F2	1931
3	TraesCS7B01G320400	chrUn	258528083	258531598	3515	True	1692.000000	2002	98.666000	167	2098	2	chrUn.!!$R2	1931
4	TraesCS7B01G320400	chrUn	19254159	19257158	2999	True	1125.000000	1677	95.715500	603	2039	2	chrUn.!!$R1	1436
5	TraesCS7B01G320400	chrUn	465892129	465892640	511	False	861.000000	861	97.070000	2311	2820	1	chrUn.!!$F1	509
6	TraesCS7B01G320400	chrUn	308001270	308002217	947	True	602.100000	1144	96.837500	1	2820	2	chrUn.!!$R3	2819
7	TraesCS7B01G320400	chr5A	674160142	674163673	3531	True	1126.566667	1995	98.688000	169	2098	3	chr5A.!!$R1	1929
8	TraesCS7B01G320400	chr5A	458928685	458929539	854	False	707.000000	1184	96.020500	28	2820	2	chr5A.!!$F2	2792
9	TraesCS7B01G320400	chr4B	566960037	566963566	3529	False	1487.000000	1919	94.230500	180	2121	2	chr4B.!!$F2	1941
10	TraesCS7B01G320400	chr4B	352166196	352166805	609	False	312.666667	601	93.595667	196	742	3	chr4B.!!$F1	546
11	TraesCS7B01G320400	chr2D	485033423	485034529	1106	False	1755.000000	1755	95.183000	982	2098	1	chr2D.!!$F2	1116
12	TraesCS7B01G320400	chr7A	156236956	156240585	3629	True	845.000000	1736	89.507000	186	2098	3	chr7A.!!$R1	1912
13	TraesCS7B01G320400	chr2B	200527872	200531479	3607	False	911.000000	1690	92.681000	188	2081	3	chr2B.!!$F1	1893
14	TraesCS7B01G320400	chr2B	667277172	667279167	1995	True	466.666667	630	96.486333	31	2820	3	chr2B.!!$R2	2789
15	TraesCS7B01G320400	chr1B	49848977	49849953	976	True	1596.000000	1596	96.126000	985	1964	1	chr1B.!!$R1	979

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
535	679	0.031043	TGATGCTGCTGTTGTTGTGC	59.969	50.0	0.0	0.0	0.0	4.57	F
541	685	0.181114	TGCTGTTGTTGTGCTCCTCT	59.819	50.0	0.0	0.0	0.0	3.69	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1796	3692	1.093159	GCCTCAAGCTCCATGTCTTG	58.907	55.000	11.25	11.25	40.62	3.02	R
2242	4144	2.487934	CAACACTGTCAGGTGAGAAGG	58.512	52.381	4.53	0.00	40.13	3.46	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
104	105	3.744660	TCTTGAGAGAAGGCTTGTTTCC	58.255	45.455	3.46	0.00	0.00	3.13
122	123	2.215196	TCCTTTTTGGTGTACTCGCAC	58.785	47.619	0.00	0.00	38.56	5.34
449	538	2.348998	CGGCTGCCTTCACTCCTT	59.651	61.111	17.92	0.00	0.00	3.36
502	646	3.243816	TGCTGCTGTGCTCCTCCA	61.244	61.111	0.00	0.00	0.00	3.86
503	647	2.745492	GCTGCTGTGCTCCTCCAC	60.745	66.667	0.00	0.00	36.28	4.02
504	648	3.067091	CTGCTGTGCTCCTCCACT	58.933	61.111	0.00	0.00	36.68	4.00
505	649	1.079266	CTGCTGTGCTCCTCCACTC	60.079	63.158	0.00	0.00	36.68	3.51
506	650	2.267324	GCTGTGCTCCTCCACTCC	59.733	66.667	0.00	0.00	36.68	3.85
507	651	2.289532	GCTGTGCTCCTCCACTCCT	61.290	63.158	0.00	0.00	36.68	3.69
508	652	1.896694	CTGTGCTCCTCCACTCCTC	59.103	63.158	0.00	0.00	36.68	3.71
509	653	1.610673	TGTGCTCCTCCACTCCTCC	60.611	63.158	0.00	0.00	36.68	4.30
510	654	2.039624	TGCTCCTCCACTCCTCCC	59.960	66.667	0.00	0.00	0.00	4.30
511	655	2.766229	GCTCCTCCACTCCTCCCC	60.766	72.222	0.00	0.00	0.00	4.81
512	656	3.114390	CTCCTCCACTCCTCCCCT	58.886	66.667	0.00	0.00	0.00	4.79
513	657	1.382420	CTCCTCCACTCCTCCCCTG	60.382	68.421	0.00	0.00	0.00	4.45
514	658	2.366167	CCTCCACTCCTCCCCTGG	60.366	72.222	0.00	0.00	0.00	4.45
515	659	2.452114	CTCCACTCCTCCCCTGGT	59.548	66.667	0.00	0.00	0.00	4.00
516	660	1.229658	CTCCACTCCTCCCCTGGTT	60.230	63.158	0.00	0.00	0.00	3.67
517	661	1.538876	TCCACTCCTCCCCTGGTTG	60.539	63.158	0.00	0.00	0.00	3.77
518	662	1.538876	CCACTCCTCCCCTGGTTGA	60.539	63.158	0.00	0.00	0.00	3.18
519	663	0.916358	CCACTCCTCCCCTGGTTGAT	60.916	60.000	0.00	0.00	0.00	2.57
520	664	0.254178	CACTCCTCCCCTGGTTGATG	59.746	60.000	0.00	0.00	0.00	3.07
521	665	1.225704	CTCCTCCCCTGGTTGATGC	59.774	63.158	0.00	0.00	0.00	3.91
522	666	1.229951	TCCTCCCCTGGTTGATGCT	60.230	57.895	0.00	0.00	0.00	3.79
523	667	1.077212	CCTCCCCTGGTTGATGCTG	60.077	63.158	0.00	0.00	0.00	4.41
524	668	1.751927	CTCCCCTGGTTGATGCTGC	60.752	63.158	0.00	0.00	0.00	5.25
525	669	2.207501	CTCCCCTGGTTGATGCTGCT	62.208	60.000	0.00	0.00	0.00	4.24
526	670	2.050350	CCCCTGGTTGATGCTGCTG	61.050	63.158	0.00	0.00	0.00	4.41
527	671	1.303888	CCCTGGTTGATGCTGCTGT	60.304	57.895	0.00	0.00	0.00	4.40
528	672	0.896940	CCCTGGTTGATGCTGCTGTT	60.897	55.000	0.00	0.00	0.00	3.16
529	673	0.242825	CCTGGTTGATGCTGCTGTTG	59.757	55.000	0.00	0.00	0.00	3.33
530	674	0.956633	CTGGTTGATGCTGCTGTTGT	59.043	50.000	0.00	0.00	0.00	3.32
531	675	1.338973	CTGGTTGATGCTGCTGTTGTT	59.661	47.619	0.00	0.00	0.00	2.83
532	676	1.067364	TGGTTGATGCTGCTGTTGTTG	59.933	47.619	0.00	0.00	0.00	3.33
533	677	1.067516	GGTTGATGCTGCTGTTGTTGT	59.932	47.619	0.00	0.00	0.00	3.32
534	678	2.121786	GTTGATGCTGCTGTTGTTGTG	58.878	47.619	0.00	0.00	0.00	3.33
535	679	0.031043	TGATGCTGCTGTTGTTGTGC	59.969	50.000	0.00	0.00	0.00	4.57
536	680	0.313043	GATGCTGCTGTTGTTGTGCT	59.687	50.000	0.00	0.00	0.00	4.40
537	681	0.313043	ATGCTGCTGTTGTTGTGCTC	59.687	50.000	0.00	0.00	0.00	4.26
538	682	1.008079	GCTGCTGTTGTTGTGCTCC	60.008	57.895	0.00	0.00	0.00	4.70
539	683	1.450531	GCTGCTGTTGTTGTGCTCCT	61.451	55.000	0.00	0.00	0.00	3.69
540	684	0.590195	CTGCTGTTGTTGTGCTCCTC	59.410	55.000	0.00	0.00	0.00	3.71
541	685	0.181114	TGCTGTTGTTGTGCTCCTCT	59.819	50.000	0.00	0.00	0.00	3.69
954	1259	6.293955	GGTTTACAATTGTGAGTATGTGCACT	60.294	38.462	21.42	6.22	36.05	4.40
957	1262	8.560355	TTACAATTGTGAGTATGTGCACTAAT	57.440	30.769	21.42	6.65	36.05	1.73
958	1263	7.452880	ACAATTGTGAGTATGTGCACTAATT	57.547	32.000	19.41	2.40	36.05	1.40
959	1264	8.560355	ACAATTGTGAGTATGTGCACTAATTA	57.440	30.769	19.41	0.00	36.05	1.40
960	1265	8.668353	ACAATTGTGAGTATGTGCACTAATTAG	58.332	33.333	19.41	11.05	36.05	1.73
961	1266	7.792374	ATTGTGAGTATGTGCACTAATTAGG	57.208	36.000	19.41	6.96	36.05	2.69
962	1267	6.538945	TGTGAGTATGTGCACTAATTAGGA	57.461	37.500	19.41	0.00	36.05	2.94
963	1268	7.124573	TGTGAGTATGTGCACTAATTAGGAT	57.875	36.000	19.41	2.72	36.05	3.24
964	1269	6.986231	TGTGAGTATGTGCACTAATTAGGATG	59.014	38.462	19.41	7.92	36.05	3.51
965	1270	7.147742	TGTGAGTATGTGCACTAATTAGGATGA	60.148	37.037	19.41	0.00	36.05	2.92
966	1271	7.710907	GTGAGTATGTGCACTAATTAGGATGAA	59.289	37.037	19.41	0.00	32.44	2.57
971	1276	7.377766	TGTGCACTAATTAGGATGAAGAAAC	57.622	36.000	19.41	3.12	0.00	2.78
972	1277	6.939730	TGTGCACTAATTAGGATGAAGAAACA	59.060	34.615	19.41	5.30	0.00	2.83
974	1279	6.374333	TGCACTAATTAGGATGAAGAAACACC	59.626	38.462	16.73	0.00	0.00	4.16
975	1280	6.599638	GCACTAATTAGGATGAAGAAACACCT	59.400	38.462	16.73	0.00	35.11	4.00
976	1281	7.201652	GCACTAATTAGGATGAAGAAACACCTC	60.202	40.741	16.73	0.00	32.90	3.85
977	1282	8.043710	CACTAATTAGGATGAAGAAACACCTCT	58.956	37.037	16.73	0.00	32.90	3.69
981	1286	3.008485	AGGATGAAGAAACACCTCTGGAC	59.992	47.826	0.00	0.00	0.00	4.02
982	1287	2.930826	TGAAGAAACACCTCTGGACC	57.069	50.000	0.00	0.00	0.00	4.46
983	1288	2.123589	TGAAGAAACACCTCTGGACCA	58.876	47.619	0.00	0.00	0.00	4.02
1954	3850	8.865420	TGGTTGCATTTACTTAATGTACCTAA	57.135	30.769	16.98	0.00	44.52	2.69
1988	3884	6.433441	ACCTAGTACCTACTGCTTAACTCAT	58.567	40.000	0.00	0.00	37.10	2.90
2098	3999	2.724690	CTCGTCGACTCGAAAACATTGT	59.275	45.455	14.70	0.00	37.72	2.71
2100	4001	2.469886	CGTCGACTCGAAAACATTGTGA	59.530	45.455	14.70	0.00	37.72	3.58
2113	4014	3.603532	ACATTGTGAGGTAGCATCACTG	58.396	45.455	18.66	14.08	45.87	3.66
2202	4104	8.082242	ACATCAAAGAAGGGATTAACGAAAAAG	58.918	33.333	0.00	0.00	0.00	2.27
2255	4157	0.394565	ACTGTGCCTTCTCACCTGAC	59.605	55.000	0.00	0.00	36.17	3.51
2317	4219	1.447314	CTAAAGGCGACGTCCCACC	60.447	63.158	20.68	15.07	0.00	4.61
2638	5695	5.574443	CCAAGCACTATTTTAAAGCAAGAGC	59.426	40.000	7.42	7.42	42.56	4.09
2651	5708	9.448438	TTTAAAGCAAGAGCACTTTCAGATATA	57.552	29.630	0.00	0.00	45.49	0.86
2779	5836	0.179181	TGCGAGTACTCTTTACGCCG	60.179	55.000	20.34	6.64	46.94	6.46

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
122	123	2.364324	CCCCAATGCTTCTCATTCATGG	59.636	50.000	0.00	0.00	43.21	3.66
126	127	5.349061	AAATTCCCCAATGCTTCTCATTC	57.651	39.130	0.00	0.00	43.21	2.67
206	218	1.927608	CTCCTGCTCTTGCGACTCGA	61.928	60.000	1.63	0.00	43.34	4.04
449	538	3.194025	AAGGGGAGGAGCACAGGGA	62.194	63.158	0.00	0.00	0.00	4.20
502	646	1.566298	GCATCAACCAGGGGAGGAGT	61.566	60.000	0.00	0.00	0.00	3.85
503	647	1.225704	GCATCAACCAGGGGAGGAG	59.774	63.158	0.00	0.00	0.00	3.69
504	648	1.229951	AGCATCAACCAGGGGAGGA	60.230	57.895	0.00	0.00	0.00	3.71
505	649	1.077212	CAGCATCAACCAGGGGAGG	60.077	63.158	0.00	0.00	0.00	4.30
506	650	1.751927	GCAGCATCAACCAGGGGAG	60.752	63.158	0.00	0.00	0.00	4.30
507	651	2.233566	AGCAGCATCAACCAGGGGA	61.234	57.895	0.00	0.00	0.00	4.81
508	652	2.050350	CAGCAGCATCAACCAGGGG	61.050	63.158	0.00	0.00	0.00	4.79
509	653	0.896940	AACAGCAGCATCAACCAGGG	60.897	55.000	0.00	0.00	0.00	4.45
510	654	0.242825	CAACAGCAGCATCAACCAGG	59.757	55.000	0.00	0.00	0.00	4.45
511	655	0.956633	ACAACAGCAGCATCAACCAG	59.043	50.000	0.00	0.00	0.00	4.00
512	656	1.067364	CAACAACAGCAGCATCAACCA	59.933	47.619	0.00	0.00	0.00	3.67
513	657	1.067516	ACAACAACAGCAGCATCAACC	59.932	47.619	0.00	0.00	0.00	3.77
514	658	2.121786	CACAACAACAGCAGCATCAAC	58.878	47.619	0.00	0.00	0.00	3.18
515	659	1.536496	GCACAACAACAGCAGCATCAA	60.536	47.619	0.00	0.00	0.00	2.57
516	660	0.031043	GCACAACAACAGCAGCATCA	59.969	50.000	0.00	0.00	0.00	3.07
517	661	0.313043	AGCACAACAACAGCAGCATC	59.687	50.000	0.00	0.00	0.00	3.91
518	662	0.313043	GAGCACAACAACAGCAGCAT	59.687	50.000	0.00	0.00	0.00	3.79
519	663	1.727511	GGAGCACAACAACAGCAGCA	61.728	55.000	0.00	0.00	0.00	4.41
520	664	1.008079	GGAGCACAACAACAGCAGC	60.008	57.895	0.00	0.00	0.00	5.25
521	665	0.590195	GAGGAGCACAACAACAGCAG	59.410	55.000	0.00	0.00	0.00	4.24
522	666	0.181114	AGAGGAGCACAACAACAGCA	59.819	50.000	0.00	0.00	0.00	4.41
523	667	1.801178	GTAGAGGAGCACAACAACAGC	59.199	52.381	0.00	0.00	0.00	4.40
524	668	3.321497	GAGTAGAGGAGCACAACAACAG	58.679	50.000	0.00	0.00	0.00	3.16
525	669	2.037251	GGAGTAGAGGAGCACAACAACA	59.963	50.000	0.00	0.00	0.00	3.33
526	670	2.300437	AGGAGTAGAGGAGCACAACAAC	59.700	50.000	0.00	0.00	0.00	3.32
527	671	2.563179	GAGGAGTAGAGGAGCACAACAA	59.437	50.000	0.00	0.00	0.00	2.83
528	672	2.171840	GAGGAGTAGAGGAGCACAACA	58.828	52.381	0.00	0.00	0.00	3.33
529	673	1.478916	GGAGGAGTAGAGGAGCACAAC	59.521	57.143	0.00	0.00	0.00	3.32
530	674	1.619977	GGGAGGAGTAGAGGAGCACAA	60.620	57.143	0.00	0.00	0.00	3.33
531	675	0.033011	GGGAGGAGTAGAGGAGCACA	60.033	60.000	0.00	0.00	0.00	4.57
532	676	0.757561	GGGGAGGAGTAGAGGAGCAC	60.758	65.000	0.00	0.00	0.00	4.40
533	677	0.926720	AGGGGAGGAGTAGAGGAGCA	60.927	60.000	0.00	0.00	0.00	4.26
534	678	0.469144	CAGGGGAGGAGTAGAGGAGC	60.469	65.000	0.00	0.00	0.00	4.70
535	679	0.187361	CCAGGGGAGGAGTAGAGGAG	59.813	65.000	0.00	0.00	0.00	3.69
536	680	0.555369	ACCAGGGGAGGAGTAGAGGA	60.555	60.000	0.00	0.00	0.00	3.71
537	681	0.340208	AACCAGGGGAGGAGTAGAGG	59.660	60.000	0.00	0.00	0.00	3.69
538	682	3.399952	TTAACCAGGGGAGGAGTAGAG	57.600	52.381	0.00	0.00	0.00	2.43
539	683	3.654273	CATTAACCAGGGGAGGAGTAGA	58.346	50.000	0.00	0.00	0.00	2.59
540	684	2.104963	GCATTAACCAGGGGAGGAGTAG	59.895	54.545	0.00	0.00	0.00	2.57
541	685	2.124411	GCATTAACCAGGGGAGGAGTA	58.876	52.381	0.00	0.00	0.00	2.59
954	1259	7.182026	TCCAGAGGTGTTTCTTCATCCTAATTA	59.818	37.037	0.00	0.00	0.00	1.40
957	1262	4.844085	TCCAGAGGTGTTTCTTCATCCTAA	59.156	41.667	0.00	0.00	0.00	2.69
958	1263	4.223032	GTCCAGAGGTGTTTCTTCATCCTA	59.777	45.833	0.00	0.00	0.00	2.94
959	1264	3.008485	GTCCAGAGGTGTTTCTTCATCCT	59.992	47.826	0.00	0.00	0.00	3.24
960	1265	3.339141	GTCCAGAGGTGTTTCTTCATCC	58.661	50.000	0.00	0.00	0.00	3.51
961	1266	3.244561	TGGTCCAGAGGTGTTTCTTCATC	60.245	47.826	0.00	0.00	0.00	2.92
962	1267	2.711009	TGGTCCAGAGGTGTTTCTTCAT	59.289	45.455	0.00	0.00	0.00	2.57
963	1268	2.123589	TGGTCCAGAGGTGTTTCTTCA	58.876	47.619	0.00	0.00	0.00	3.02
964	1269	2.495084	GTGGTCCAGAGGTGTTTCTTC	58.505	52.381	0.00	0.00	0.00	2.87
965	1270	1.202651	CGTGGTCCAGAGGTGTTTCTT	60.203	52.381	0.00	0.00	0.00	2.52
966	1271	0.393077	CGTGGTCCAGAGGTGTTTCT	59.607	55.000	0.00	0.00	0.00	2.52
971	1276	0.966920	ACTTACGTGGTCCAGAGGTG	59.033	55.000	0.00	0.00	0.00	4.00
972	1277	2.592102	TACTTACGTGGTCCAGAGGT	57.408	50.000	0.00	0.00	0.00	3.85
974	1279	8.488651	AAAATTTATACTTACGTGGTCCAGAG	57.511	34.615	0.00	0.00	0.00	3.35
977	1282	9.111613	CCATAAAATTTATACTTACGTGGTCCA	57.888	33.333	0.00	0.00	0.00	4.02
981	1286	7.589954	GCTGCCATAAAATTTATACTTACGTGG	59.410	37.037	0.00	0.00	0.00	4.94
982	1287	8.342634	AGCTGCCATAAAATTTATACTTACGTG	58.657	33.333	0.00	0.00	0.00	4.49
983	1288	8.446599	AGCTGCCATAAAATTTATACTTACGT	57.553	30.769	0.00	0.00	0.00	3.57
1796	3692	1.093159	GCCTCAAGCTCCATGTCTTG	58.907	55.000	11.25	11.25	40.62	3.02
1954	3850	4.918891	AGTAGGTACTAGGTAGTAGGGCAT	59.081	45.833	0.00	0.00	44.14	4.40
2098	3999	5.046376	TCAAGATTTCAGTGATGCTACCTCA	60.046	40.000	0.00	0.00	0.00	3.86
2100	4001	5.426689	TCAAGATTTCAGTGATGCTACCT	57.573	39.130	0.00	0.00	0.00	3.08
2113	4014	7.276438	GCCAATAGTGTCCAAAATCAAGATTTC	59.724	37.037	8.36	0.00	39.88	2.17
2202	4104	7.866393	AGCAGTAATATCGTGTCATTACCTAAC	59.134	37.037	0.00	0.00	38.04	2.34
2242	4144	2.487934	CAACACTGTCAGGTGAGAAGG	58.512	52.381	4.53	0.00	40.13	3.46
2255	4157	4.647611	TCCCAAACTATGTACCAACACTG	58.352	43.478	0.00	0.00	38.78	3.66
2317	4219	4.515191	TCGAACTGAAAATGGAAGGAAGTG	59.485	41.667	0.00	0.00	0.00	3.16

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.