Multiple sequence alignment - TraesCS7B01G319300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G319300 chr7B 100.000 2321 0 0 1 2321 568802271 568799951 0.000000e+00 4287.0
1 TraesCS7B01G319300 chr7B 86.667 60 7 1 1552 1611 109707050 109706992 5.350000e-07 65.8
2 TraesCS7B01G319300 chr7D 91.808 2063 121 18 1 2056 530355342 530353321 0.000000e+00 2830.0
3 TraesCS7B01G319300 chr7A 92.647 476 34 1 936 1411 610499258 610498784 0.000000e+00 684.0
4 TraesCS7B01G319300 chr7A 83.644 483 67 8 392 862 610499777 610499295 5.880000e-121 444.0
5 TraesCS7B01G319300 chr1A 100.000 266 0 0 2056 2321 510454506 510454241 2.070000e-135 492.0
6 TraesCS7B01G319300 chr2D 91.985 262 21 0 2056 2317 59654159 59653898 3.640000e-98 368.0
7 TraesCS7B01G319300 chr2D 93.750 208 13 0 2059 2266 512891330 512891537 1.730000e-81 313.0
8 TraesCS7B01G319300 chr4D 83.886 211 29 5 1545 1751 364572434 364572225 1.820000e-46 196.0
9 TraesCS7B01G319300 chr4D 82.051 117 18 2 1609 1722 339082111 339082227 1.900000e-16 97.1
10 TraesCS7B01G319300 chr1B 84.892 139 21 0 2054 2192 523306698 523306836 8.650000e-30 141.0
11 TraesCS7B01G319300 chr1B 75.349 215 42 9 1543 1751 478047203 478046994 2.460000e-15 93.5
12 TraesCS7B01G319300 chr3D 79.885 174 27 6 1554 1721 439807707 439807536 1.130000e-23 121.0
13 TraesCS7B01G319300 chr2A 85.841 113 16 0 2056 2168 28834344 28834232 1.130000e-23 121.0
14 TraesCS7B01G319300 chr2A 79.532 171 20 12 1554 1721 720553538 720553380 8.770000e-20 108.0
15 TraesCS7B01G319300 chr5D 78.235 170 34 2 1555 1721 426474895 426474726 3.150000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G319300 chr7B 568799951 568802271 2320 True 4287 4287 100.0000 1 2321 1 chr7B.!!$R2 2320
1 TraesCS7B01G319300 chr7D 530353321 530355342 2021 True 2830 2830 91.8080 1 2056 1 chr7D.!!$R1 2055
2 TraesCS7B01G319300 chr7A 610498784 610499777 993 True 564 684 88.1455 392 1411 2 chr7A.!!$R1 1019

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
402 403 0.108186 TCATGCCCTTACGAGCTGTG 60.108 55.0 0.0 0.0 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2208 2228 0.033601 AGGTCTCCTCTGCGTCAGAT 60.034 55.0 9.47 0.0 39.92 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 1.352156 CGTCGCCTCAAACCTGCTAC 61.352 60.000 0.00 0.00 0.00 3.58
113 114 3.333414 GCAGCTTGCAGACGACAA 58.667 55.556 0.00 0.00 44.26 3.18
116 117 0.234106 CAGCTTGCAGACGACAAGTG 59.766 55.000 10.83 5.89 45.09 3.16
119 120 4.530581 TGCAGACGACAAGTGCAA 57.469 50.000 0.00 0.00 44.05 4.08
157 158 5.003804 GGCCTCTTCAGTTGATAAAGTGAA 58.996 41.667 11.84 11.84 39.16 3.18
202 203 3.011821 GGGGGAAGGAAAGGAGAGAAATT 59.988 47.826 0.00 0.00 0.00 1.82
216 217 2.163211 GAGAAATTGGACCTTGCTGCTC 59.837 50.000 0.00 0.00 0.00 4.26
238 239 3.428180 CGTGTCTACCATCCACTTCTCTG 60.428 52.174 0.00 0.00 0.00 3.35
255 256 0.743701 CTGCGCTTCATGGAGCTTCT 60.744 55.000 23.56 0.00 40.52 2.85
258 259 1.150567 CGCTTCATGGAGCTTCTCGG 61.151 60.000 23.56 3.13 40.52 4.63
261 262 1.888436 TTCATGGAGCTTCTCGGCGT 61.888 55.000 6.85 0.00 37.29 5.68
263 264 1.448540 ATGGAGCTTCTCGGCGTTG 60.449 57.895 6.85 1.06 37.29 4.10
275 276 2.045340 GCGTTGTGTAGGCCCCAT 60.045 61.111 0.00 0.00 0.00 4.00
365 366 0.623723 GGACTATGGGGAAGCACCAA 59.376 55.000 0.00 0.00 42.17 3.67
367 368 2.358195 GGACTATGGGGAAGCACCAAAT 60.358 50.000 0.00 0.00 42.17 2.32
372 373 2.122768 TGGGGAAGCACCAAATTGTTT 58.877 42.857 0.00 0.00 41.20 2.83
394 395 2.498167 CACCATAGCTCATGCCCTTAC 58.502 52.381 0.00 0.00 40.80 2.34
401 402 0.176680 CTCATGCCCTTACGAGCTGT 59.823 55.000 0.00 0.00 0.00 4.40
402 403 0.108186 TCATGCCCTTACGAGCTGTG 60.108 55.000 0.00 0.00 0.00 3.66
406 407 0.179124 GCCCTTACGAGCTGTGAGAG 60.179 60.000 0.00 0.00 36.32 3.20
434 436 2.650608 CGCCAGAAAAAGAAGGAAACG 58.349 47.619 0.00 0.00 0.00 3.60
450 452 5.805728 AGGAAACGAGGAAATACAACTGAT 58.194 37.500 0.00 0.00 0.00 2.90
451 453 5.875359 AGGAAACGAGGAAATACAACTGATC 59.125 40.000 0.00 0.00 0.00 2.92
469 471 1.672356 CTGTGGGCCAAGACGAAGG 60.672 63.158 8.40 0.00 0.00 3.46
477 479 0.390472 CCAAGACGAAGGCAGAGGAC 60.390 60.000 0.00 0.00 0.00 3.85
536 538 2.918712 GATGTCGGTCATCTTCCCAT 57.081 50.000 7.79 0.00 46.64 4.00
571 573 7.706179 TCAGGAAAGTTGCTTTTTGTTATCTTG 59.294 33.333 0.00 0.00 33.49 3.02
636 638 0.834687 GGAGTGGGGTGGTACTGTCA 60.835 60.000 0.00 0.00 0.00 3.58
659 661 0.389948 CCTACCTCACGTTGCTGGAC 60.390 60.000 0.00 0.00 0.00 4.02
667 679 2.096819 TCACGTTGCTGGACTTTTCAAC 59.903 45.455 0.00 0.00 36.42 3.18
696 708 1.083401 GCTCGTGCACAGAACAACG 60.083 57.895 18.64 0.00 39.41 4.10
782 794 9.996554 TCTAGTGTTCTTTATCATGTCTCAAAA 57.003 29.630 0.00 0.00 0.00 2.44
831 844 5.962423 CGTCACTGCATCATCTAGATATACG 59.038 44.000 4.54 2.09 34.43 3.06
886 899 7.548075 TCTTCTGGTTTATCGTAAGGTTTCATC 59.452 37.037 0.00 0.00 38.47 2.92
891 904 6.540914 GGTTTATCGTAAGGTTTCATCATCCA 59.459 38.462 0.00 0.00 38.47 3.41
930 943 5.507650 GGGATCGATGTCACTACTAACTTCC 60.508 48.000 0.54 0.00 0.00 3.46
971 984 4.021102 TCTCTTCTTGGGTGTTCATTCC 57.979 45.455 0.00 0.00 0.00 3.01
990 1003 1.133575 CCTGGATGCATGAAGGTCCAT 60.134 52.381 2.46 0.00 39.81 3.41
1125 1138 9.693739 TTCTATGTTATGATGTTGTTACCCAAT 57.306 29.630 0.00 0.00 35.02 3.16
1319 1332 6.054941 TCTGTCTCTGCAAGAAACATTGTTA 58.945 36.000 1.76 0.00 46.34 2.41
1369 1382 4.896482 AGTAATAAGATCTTGAGGCGGAGT 59.104 41.667 18.47 0.00 0.00 3.85
1444 1457 2.516906 ACATGACATGTGGTTGCATCA 58.483 42.857 20.21 0.00 43.01 3.07
1491 1504 1.311859 CAGATGCCCGCATGTTGTAT 58.688 50.000 6.96 0.00 36.70 2.29
1510 1523 5.189928 TGTATTTCCGGCAATACAAGTCAT 58.810 37.500 29.68 0.00 43.55 3.06
1514 1527 6.767524 TTTCCGGCAATACAAGTCATAAAT 57.232 33.333 0.00 0.00 0.00 1.40
1516 1529 6.130298 TCCGGCAATACAAGTCATAAATTG 57.870 37.500 0.00 0.00 0.00 2.32
1519 1532 6.321717 CGGCAATACAAGTCATAAATTGTGT 58.678 36.000 0.00 0.00 39.83 3.72
1520 1533 6.251163 CGGCAATACAAGTCATAAATTGTGTG 59.749 38.462 0.00 0.00 39.83 3.82
1521 1534 7.090173 GGCAATACAAGTCATAAATTGTGTGT 58.910 34.615 0.00 0.00 39.83 3.72
1529 1542 7.072177 AGTCATAAATTGTGTGTATTGACCG 57.928 36.000 0.00 0.00 0.00 4.79
1565 1578 1.895131 GGCCCTCTTTTGATTTGCAGA 59.105 47.619 0.00 0.00 0.00 4.26
1579 1592 9.504710 TTTGATTTGCAGAATTTTCAAAACATG 57.495 25.926 2.27 0.00 34.24 3.21
1583 1596 5.678583 TGCAGAATTTTCAAAACATGGGAA 58.321 33.333 0.00 0.00 0.00 3.97
1584 1597 6.297582 TGCAGAATTTTCAAAACATGGGAAT 58.702 32.000 0.00 0.00 0.00 3.01
1630 1645 4.040952 GGCATGTCCACTTCAGTCCTATAT 59.959 45.833 0.00 0.00 34.01 0.86
1703 1718 8.358582 AGAGGTTTGAATGAATGCTAGATTTT 57.641 30.769 0.00 0.00 0.00 1.82
1741 1756 9.614792 AGTACACTTATTCCATAGGAAACAATC 57.385 33.333 2.16 0.00 45.41 2.67
1742 1757 9.391006 GTACACTTATTCCATAGGAAACAATCA 57.609 33.333 2.16 0.00 45.41 2.57
1802 1817 8.343787 TCTAACCCTCCAAAATCCTATGAAATT 58.656 33.333 0.00 0.00 0.00 1.82
1805 1820 5.010012 CCCTCCAAAATCCTATGAAATTCCG 59.990 44.000 0.00 0.00 0.00 4.30
1818 1835 4.266714 TGAAATTCCGTAATCAAGGACCC 58.733 43.478 0.00 0.00 36.06 4.46
1819 1836 4.263550 TGAAATTCCGTAATCAAGGACCCA 60.264 41.667 0.00 0.00 36.06 4.51
1820 1837 3.560636 ATTCCGTAATCAAGGACCCAG 57.439 47.619 0.00 0.00 36.06 4.45
1821 1838 2.241281 TCCGTAATCAAGGACCCAGA 57.759 50.000 0.00 0.00 0.00 3.86
1827 1844 5.050490 CGTAATCAAGGACCCAGATAAGTG 58.950 45.833 0.00 0.00 0.00 3.16
1852 1869 4.565022 ACACGTGTGACATGAACATATGA 58.435 39.130 22.71 0.00 0.00 2.15
1855 1872 4.627035 ACGTGTGACATGAACATATGACAG 59.373 41.667 12.40 6.25 34.39 3.51
1863 1880 3.521560 TGAACATATGACAGCTCCGAAC 58.478 45.455 10.38 0.00 0.00 3.95
1864 1881 3.056179 TGAACATATGACAGCTCCGAACA 60.056 43.478 10.38 0.00 0.00 3.18
1866 1883 4.142609 ACATATGACAGCTCCGAACATT 57.857 40.909 10.38 0.00 0.00 2.71
1867 1884 4.517285 ACATATGACAGCTCCGAACATTT 58.483 39.130 10.38 0.00 0.00 2.32
1868 1885 4.943705 ACATATGACAGCTCCGAACATTTT 59.056 37.500 10.38 0.00 0.00 1.82
1869 1886 5.415701 ACATATGACAGCTCCGAACATTTTT 59.584 36.000 10.38 0.00 0.00 1.94
1897 1914 5.473039 GCTTTTGATGGCAAGTTTACTGAT 58.527 37.500 0.00 0.00 35.04 2.90
1911 1928 6.715280 AGTTTACTGATGTGAGGATGACAAT 58.285 36.000 0.00 0.00 34.53 2.71
1912 1929 6.596888 AGTTTACTGATGTGAGGATGACAATG 59.403 38.462 0.00 0.00 34.53 2.82
1921 1939 4.081406 TGAGGATGACAATGTTTTGAGGG 58.919 43.478 0.00 0.00 36.64 4.30
1930 1948 2.397044 TGTTTTGAGGGAAGGCCATT 57.603 45.000 5.01 0.00 35.15 3.16
1932 1950 3.161866 TGTTTTGAGGGAAGGCCATTAC 58.838 45.455 5.01 0.00 35.15 1.89
1948 1966 5.924475 CCATTACGGCTAGGTTTATTGAG 57.076 43.478 0.00 0.00 0.00 3.02
1953 1971 5.093849 ACGGCTAGGTTTATTGAGCTTAA 57.906 39.130 0.00 0.00 35.23 1.85
1954 1972 5.493809 ACGGCTAGGTTTATTGAGCTTAAA 58.506 37.500 0.00 0.00 35.23 1.52
1955 1973 5.353400 ACGGCTAGGTTTATTGAGCTTAAAC 59.647 40.000 9.96 9.96 38.33 2.01
1956 1974 5.353123 CGGCTAGGTTTATTGAGCTTAAACA 59.647 40.000 17.19 0.00 39.97 2.83
1957 1975 6.128117 CGGCTAGGTTTATTGAGCTTAAACAA 60.128 38.462 17.19 5.19 39.97 2.83
1958 1976 7.251281 GGCTAGGTTTATTGAGCTTAAACAAG 58.749 38.462 17.19 14.57 39.97 3.16
1959 1977 7.120726 GGCTAGGTTTATTGAGCTTAAACAAGA 59.879 37.037 17.19 0.00 39.97 3.02
1960 1978 8.512138 GCTAGGTTTATTGAGCTTAAACAAGAA 58.488 33.333 17.19 5.60 39.97 2.52
1971 1989 9.453572 TGAGCTTAAACAAGAATTACATCATCT 57.546 29.630 0.00 0.00 0.00 2.90
1978 1996 8.641498 AACAAGAATTACATCATCTGGAAGTT 57.359 30.769 0.00 0.00 28.87 2.66
1979 1997 8.641498 ACAAGAATTACATCATCTGGAAGTTT 57.359 30.769 0.00 0.00 28.87 2.66
1996 2014 4.164843 AGTTTAGAAACCAGACAAGCCA 57.835 40.909 1.52 0.00 39.71 4.75
2004 2024 1.739562 CAGACAAGCCAGGCTCGTC 60.740 63.158 23.36 23.36 42.26 4.20
2038 2058 8.336801 AGCTACAAACCTTATTACAAAAGGAG 57.663 34.615 8.79 1.63 45.41 3.69
2056 2076 4.537751 AGGAGTAACTAGCTAGCACATGA 58.462 43.478 20.91 0.00 0.00 3.07
2057 2077 4.582656 AGGAGTAACTAGCTAGCACATGAG 59.417 45.833 20.91 8.14 0.00 2.90
2058 2078 4.580995 GGAGTAACTAGCTAGCACATGAGA 59.419 45.833 20.91 0.00 0.00 3.27
2059 2079 5.278266 GGAGTAACTAGCTAGCACATGAGAG 60.278 48.000 20.91 4.65 0.00 3.20
2060 2080 3.451141 AACTAGCTAGCACATGAGAGC 57.549 47.619 20.91 2.17 35.07 4.09
2061 2081 1.336440 ACTAGCTAGCACATGAGAGCG 59.664 52.381 20.91 0.00 39.96 5.03
2062 2082 0.670706 TAGCTAGCACATGAGAGCGG 59.329 55.000 18.83 1.10 39.96 5.52
2063 2083 2.243264 GCTAGCACATGAGAGCGGC 61.243 63.158 10.63 7.17 36.39 6.53
2064 2084 1.593750 CTAGCACATGAGAGCGGCC 60.594 63.158 0.00 0.00 36.39 6.13
2065 2085 3.430565 TAGCACATGAGAGCGGCCG 62.431 63.158 24.05 24.05 36.39 6.13
2067 2087 2.887568 CACATGAGAGCGGCCGTC 60.888 66.667 28.70 21.79 0.00 4.79
2068 2088 4.148825 ACATGAGAGCGGCCGTCC 62.149 66.667 28.70 18.55 0.00 4.79
2069 2089 3.842923 CATGAGAGCGGCCGTCCT 61.843 66.667 28.70 23.14 0.00 3.85
2070 2090 3.842923 ATGAGAGCGGCCGTCCTG 61.843 66.667 28.70 0.00 0.00 3.86
2072 2092 3.760035 GAGAGCGGCCGTCCTGAA 61.760 66.667 28.70 0.00 0.00 3.02
2073 2093 3.991536 GAGAGCGGCCGTCCTGAAC 62.992 68.421 28.70 7.91 0.00 3.18
2085 2105 2.816958 CTGAACGCAGCGGCAGAT 60.817 61.111 26.66 6.56 41.24 2.90
2086 2106 3.092192 CTGAACGCAGCGGCAGATG 62.092 63.158 26.66 0.00 41.24 2.90
2087 2107 2.815211 GAACGCAGCGGCAGATGA 60.815 61.111 21.15 0.00 41.24 2.92
2088 2108 2.124983 AACGCAGCGGCAGATGAT 60.125 55.556 21.15 0.00 41.24 2.45
2089 2109 2.098842 GAACGCAGCGGCAGATGATC 62.099 60.000 21.15 0.00 41.24 2.92
2090 2110 3.699484 CGCAGCGGCAGATGATCG 61.699 66.667 7.00 0.00 41.24 3.69
2095 2115 4.115279 CGGCAGATGATCGCAACT 57.885 55.556 10.41 0.00 0.00 3.16
2096 2116 3.272766 CGGCAGATGATCGCAACTA 57.727 52.632 10.41 0.00 0.00 2.24
2097 2117 1.788258 CGGCAGATGATCGCAACTAT 58.212 50.000 10.41 0.00 0.00 2.12
2098 2118 1.723542 CGGCAGATGATCGCAACTATC 59.276 52.381 10.41 0.00 0.00 2.08
2099 2119 2.072298 GGCAGATGATCGCAACTATCC 58.928 52.381 10.41 0.00 0.00 2.59
2100 2120 2.548707 GGCAGATGATCGCAACTATCCA 60.549 50.000 10.41 0.00 0.00 3.41
2101 2121 3.133691 GCAGATGATCGCAACTATCCAA 58.866 45.455 4.79 0.00 0.00 3.53
2102 2122 3.059325 GCAGATGATCGCAACTATCCAAC 60.059 47.826 4.79 0.00 0.00 3.77
2103 2123 3.496130 CAGATGATCGCAACTATCCAACC 59.504 47.826 0.00 0.00 0.00 3.77
2104 2124 1.934589 TGATCGCAACTATCCAACCG 58.065 50.000 0.00 0.00 0.00 4.44
2105 2125 1.217882 GATCGCAACTATCCAACCGG 58.782 55.000 0.00 0.00 0.00 5.28
2106 2126 0.539986 ATCGCAACTATCCAACCGGT 59.460 50.000 0.00 0.00 0.00 5.28
2107 2127 0.108520 TCGCAACTATCCAACCGGTC 60.109 55.000 8.04 0.00 0.00 4.79
2108 2128 1.418342 CGCAACTATCCAACCGGTCG 61.418 60.000 8.04 0.00 0.00 4.79
2109 2129 0.390735 GCAACTATCCAACCGGTCGT 60.391 55.000 8.04 0.00 0.00 4.34
2110 2130 1.636988 CAACTATCCAACCGGTCGTC 58.363 55.000 8.04 0.00 0.00 4.20
2111 2131 0.533951 AACTATCCAACCGGTCGTCC 59.466 55.000 8.04 0.00 0.00 4.79
2112 2132 0.612732 ACTATCCAACCGGTCGTCCA 60.613 55.000 8.04 0.00 0.00 4.02
2113 2133 0.102481 CTATCCAACCGGTCGTCCAG 59.898 60.000 8.04 0.00 0.00 3.86
2114 2134 1.324740 TATCCAACCGGTCGTCCAGG 61.325 60.000 8.04 3.56 34.95 4.45
2121 2141 4.436998 GGTCGTCCAGGCGAGGTG 62.437 72.222 6.26 0.00 41.85 4.00
2122 2142 3.371063 GTCGTCCAGGCGAGGTGA 61.371 66.667 6.26 0.00 41.85 4.02
2123 2143 2.362503 TCGTCCAGGCGAGGTGAT 60.363 61.111 2.24 0.00 35.83 3.06
2124 2144 2.105128 CGTCCAGGCGAGGTGATC 59.895 66.667 0.00 0.00 0.00 2.92
2125 2145 2.710902 CGTCCAGGCGAGGTGATCA 61.711 63.158 0.00 0.00 0.00 2.92
2126 2146 1.142748 GTCCAGGCGAGGTGATCAG 59.857 63.158 0.00 0.00 0.00 2.90
2127 2147 1.305297 TCCAGGCGAGGTGATCAGT 60.305 57.895 0.00 0.00 0.00 3.41
2128 2148 1.153489 CCAGGCGAGGTGATCAGTG 60.153 63.158 0.00 0.00 0.00 3.66
2129 2149 1.812922 CAGGCGAGGTGATCAGTGC 60.813 63.158 0.00 0.00 0.00 4.40
2130 2150 2.887568 GGCGAGGTGATCAGTGCG 60.888 66.667 0.00 0.77 0.00 5.34
2131 2151 3.558411 GCGAGGTGATCAGTGCGC 61.558 66.667 16.76 16.76 37.60 6.09
2132 2152 2.182791 CGAGGTGATCAGTGCGCT 59.817 61.111 9.73 0.00 0.00 5.92
2133 2153 1.433471 CGAGGTGATCAGTGCGCTA 59.567 57.895 9.73 0.00 0.00 4.26
2134 2154 0.179137 CGAGGTGATCAGTGCGCTAA 60.179 55.000 9.73 0.00 0.00 3.09
2135 2155 1.735700 CGAGGTGATCAGTGCGCTAAA 60.736 52.381 9.73 0.00 0.00 1.85
2136 2156 1.929836 GAGGTGATCAGTGCGCTAAAG 59.070 52.381 9.73 0.00 0.00 1.85
2137 2157 1.276421 AGGTGATCAGTGCGCTAAAGT 59.724 47.619 9.73 0.00 0.00 2.66
2138 2158 2.076863 GGTGATCAGTGCGCTAAAGTT 58.923 47.619 9.73 0.00 0.00 2.66
2139 2159 2.094417 GGTGATCAGTGCGCTAAAGTTC 59.906 50.000 9.73 0.00 0.00 3.01
2140 2160 1.992667 TGATCAGTGCGCTAAAGTTCG 59.007 47.619 9.73 0.00 0.00 3.95
2141 2161 1.993370 GATCAGTGCGCTAAAGTTCGT 59.007 47.619 9.73 0.00 0.00 3.85
2142 2162 1.860676 TCAGTGCGCTAAAGTTCGTT 58.139 45.000 9.73 0.00 0.00 3.85
2143 2163 1.790623 TCAGTGCGCTAAAGTTCGTTC 59.209 47.619 9.73 0.00 0.00 3.95
2144 2164 1.525197 CAGTGCGCTAAAGTTCGTTCA 59.475 47.619 9.73 0.00 0.00 3.18
2145 2165 1.792949 AGTGCGCTAAAGTTCGTTCAG 59.207 47.619 9.73 0.00 0.00 3.02
2146 2166 1.790623 GTGCGCTAAAGTTCGTTCAGA 59.209 47.619 9.73 0.00 0.00 3.27
2147 2167 1.790623 TGCGCTAAAGTTCGTTCAGAC 59.209 47.619 9.73 0.00 0.00 3.51
2148 2168 1.126296 GCGCTAAAGTTCGTTCAGACC 59.874 52.381 0.00 0.00 0.00 3.85
2149 2169 2.400399 CGCTAAAGTTCGTTCAGACCA 58.600 47.619 0.00 0.00 0.00 4.02
2150 2170 2.408704 CGCTAAAGTTCGTTCAGACCAG 59.591 50.000 0.00 0.00 0.00 4.00
2151 2171 2.737252 GCTAAAGTTCGTTCAGACCAGG 59.263 50.000 0.00 0.00 0.00 4.45
2152 2172 3.554337 GCTAAAGTTCGTTCAGACCAGGA 60.554 47.826 0.00 0.00 0.00 3.86
2153 2173 3.553828 AAAGTTCGTTCAGACCAGGAA 57.446 42.857 0.00 0.00 0.00 3.36
2154 2174 3.553828 AAGTTCGTTCAGACCAGGAAA 57.446 42.857 0.00 0.00 0.00 3.13
2155 2175 3.113260 AGTTCGTTCAGACCAGGAAAG 57.887 47.619 0.00 0.00 0.00 2.62
2156 2176 2.434702 AGTTCGTTCAGACCAGGAAAGT 59.565 45.455 0.00 0.00 0.00 2.66
2157 2177 2.526304 TCGTTCAGACCAGGAAAGTG 57.474 50.000 0.00 0.00 0.00 3.16
2158 2178 1.070134 TCGTTCAGACCAGGAAAGTGG 59.930 52.381 0.00 0.00 44.01 4.00
2159 2179 1.070134 CGTTCAGACCAGGAAAGTGGA 59.930 52.381 0.00 0.00 40.44 4.02
2160 2180 2.495084 GTTCAGACCAGGAAAGTGGAC 58.505 52.381 0.00 0.00 40.44 4.02
2161 2181 1.801242 TCAGACCAGGAAAGTGGACA 58.199 50.000 0.00 0.00 40.44 4.02
2162 2182 2.338809 TCAGACCAGGAAAGTGGACAT 58.661 47.619 0.00 0.00 40.44 3.06
2163 2183 3.516586 TCAGACCAGGAAAGTGGACATA 58.483 45.455 0.00 0.00 40.44 2.29
2164 2184 3.260884 TCAGACCAGGAAAGTGGACATAC 59.739 47.826 0.00 0.00 40.44 2.39
2165 2185 3.007940 CAGACCAGGAAAGTGGACATACA 59.992 47.826 0.00 0.00 40.44 2.29
2166 2186 3.846588 AGACCAGGAAAGTGGACATACAT 59.153 43.478 0.00 0.00 40.44 2.29
2167 2187 4.080863 AGACCAGGAAAGTGGACATACATC 60.081 45.833 0.00 0.00 40.44 3.06
2168 2188 3.198068 CCAGGAAAGTGGACATACATCG 58.802 50.000 0.00 0.00 40.44 3.84
2169 2189 3.198068 CAGGAAAGTGGACATACATCGG 58.802 50.000 0.00 0.00 0.00 4.18
2170 2190 2.838202 AGGAAAGTGGACATACATCGGT 59.162 45.455 0.00 0.00 0.00 4.69
2171 2191 3.118738 AGGAAAGTGGACATACATCGGTC 60.119 47.826 0.00 0.00 0.00 4.79
2172 2192 2.579207 AAGTGGACATACATCGGTCG 57.421 50.000 0.00 0.00 34.87 4.79
2173 2193 1.758936 AGTGGACATACATCGGTCGA 58.241 50.000 0.00 0.00 34.87 4.20
2174 2194 2.307768 AGTGGACATACATCGGTCGAT 58.692 47.619 0.00 0.00 34.87 3.59
2175 2195 3.483421 AGTGGACATACATCGGTCGATA 58.517 45.455 5.50 0.00 34.87 2.92
2176 2196 3.252701 AGTGGACATACATCGGTCGATAC 59.747 47.826 5.50 0.00 34.87 2.24
2177 2197 3.004002 GTGGACATACATCGGTCGATACA 59.996 47.826 5.50 0.00 34.87 2.29
2178 2198 3.824443 TGGACATACATCGGTCGATACAT 59.176 43.478 5.50 0.14 34.87 2.29
2179 2199 4.166523 GGACATACATCGGTCGATACATG 58.833 47.826 17.33 17.33 34.87 3.21
2180 2200 4.321008 GGACATACATCGGTCGATACATGT 60.321 45.833 21.34 21.34 39.14 3.21
2181 2201 4.546570 ACATACATCGGTCGATACATGTG 58.453 43.478 20.90 14.01 37.10 3.21
2182 2202 4.277423 ACATACATCGGTCGATACATGTGA 59.723 41.667 20.90 0.00 37.10 3.58
2183 2203 3.793797 ACATCGGTCGATACATGTGAA 57.206 42.857 9.11 0.00 32.93 3.18
2184 2204 4.322080 ACATCGGTCGATACATGTGAAT 57.678 40.909 9.11 0.00 32.93 2.57
2185 2205 5.447624 ACATCGGTCGATACATGTGAATA 57.552 39.130 9.11 0.00 32.93 1.75
2186 2206 5.220381 ACATCGGTCGATACATGTGAATAC 58.780 41.667 9.11 1.71 32.93 1.89
2187 2207 4.233123 TCGGTCGATACATGTGAATACC 57.767 45.455 9.11 10.04 0.00 2.73
2188 2208 3.005050 TCGGTCGATACATGTGAATACCC 59.995 47.826 9.11 0.54 0.00 3.69
2189 2209 3.005472 CGGTCGATACATGTGAATACCCT 59.995 47.826 9.11 0.00 0.00 4.34
2190 2210 4.500887 CGGTCGATACATGTGAATACCCTT 60.501 45.833 9.11 0.00 0.00 3.95
2191 2211 4.750098 GGTCGATACATGTGAATACCCTTG 59.250 45.833 9.11 0.00 0.00 3.61
2192 2212 5.357257 GTCGATACATGTGAATACCCTTGT 58.643 41.667 9.11 0.00 0.00 3.16
2193 2213 5.462398 GTCGATACATGTGAATACCCTTGTC 59.538 44.000 9.11 0.00 0.00 3.18
2194 2214 4.750098 CGATACATGTGAATACCCTTGTCC 59.250 45.833 9.11 0.00 0.00 4.02
2195 2215 5.453339 CGATACATGTGAATACCCTTGTCCT 60.453 44.000 9.11 0.00 0.00 3.85
2196 2216 4.657814 ACATGTGAATACCCTTGTCCTT 57.342 40.909 0.00 0.00 0.00 3.36
2197 2217 4.335416 ACATGTGAATACCCTTGTCCTTG 58.665 43.478 0.00 0.00 0.00 3.61
2198 2218 4.202567 ACATGTGAATACCCTTGTCCTTGT 60.203 41.667 0.00 0.00 0.00 3.16
2199 2219 3.750371 TGTGAATACCCTTGTCCTTGTG 58.250 45.455 0.00 0.00 0.00 3.33
2200 2220 3.081804 GTGAATACCCTTGTCCTTGTGG 58.918 50.000 0.00 0.00 0.00 4.17
2201 2221 2.041081 TGAATACCCTTGTCCTTGTGGG 59.959 50.000 0.00 0.00 44.89 4.61
2202 2222 0.999712 ATACCCTTGTCCTTGTGGGG 59.000 55.000 0.00 0.00 43.72 4.96
2203 2223 1.699930 ACCCTTGTCCTTGTGGGGT 60.700 57.895 0.00 0.00 44.66 4.95
2204 2224 1.228552 CCCTTGTCCTTGTGGGGTG 60.229 63.158 0.00 0.00 36.15 4.61
2205 2225 1.903404 CCTTGTCCTTGTGGGGTGC 60.903 63.158 0.00 0.00 35.33 5.01
2206 2226 1.152777 CTTGTCCTTGTGGGGTGCA 60.153 57.895 0.00 0.00 35.33 4.57
2207 2227 1.454847 TTGTCCTTGTGGGGTGCAC 60.455 57.895 8.80 8.80 35.33 4.57
2208 2228 2.194597 GTCCTTGTGGGGTGCACA 59.805 61.111 20.43 0.00 35.33 4.57
2209 2229 1.228552 GTCCTTGTGGGGTGCACAT 60.229 57.895 20.43 0.00 35.33 3.21
2210 2230 1.074775 TCCTTGTGGGGTGCACATC 59.925 57.895 20.43 10.40 35.33 3.06
2211 2231 1.075482 CCTTGTGGGGTGCACATCT 59.925 57.895 20.43 0.00 32.12 2.90
2212 2232 1.246056 CCTTGTGGGGTGCACATCTG 61.246 60.000 20.43 1.52 32.12 2.90
2213 2233 0.250858 CTTGTGGGGTGCACATCTGA 60.251 55.000 20.43 0.00 32.12 3.27
2214 2234 0.537143 TTGTGGGGTGCACATCTGAC 60.537 55.000 20.43 7.87 32.12 3.51
2215 2235 2.034879 GTGGGGTGCACATCTGACG 61.035 63.158 20.43 0.00 0.00 4.35
2216 2236 3.127533 GGGGTGCACATCTGACGC 61.128 66.667 20.43 4.46 0.00 5.19
2217 2237 2.358615 GGGTGCACATCTGACGCA 60.359 61.111 20.43 0.00 0.00 5.24
2218 2238 2.393768 GGGTGCACATCTGACGCAG 61.394 63.158 20.43 1.02 36.07 5.18
2219 2239 1.374631 GGTGCACATCTGACGCAGA 60.375 57.895 20.43 11.12 44.99 4.26
2220 2240 1.357258 GGTGCACATCTGACGCAGAG 61.357 60.000 20.43 9.07 44.08 3.35
2221 2241 1.079612 TGCACATCTGACGCAGAGG 60.080 57.895 16.27 16.27 46.05 3.69
2222 2242 1.216444 GCACATCTGACGCAGAGGA 59.784 57.895 22.09 0.53 43.80 3.71
2223 2243 0.805322 GCACATCTGACGCAGAGGAG 60.805 60.000 22.09 16.93 43.80 3.69
2224 2244 0.813821 CACATCTGACGCAGAGGAGA 59.186 55.000 22.09 0.00 43.80 3.71
2225 2245 0.814457 ACATCTGACGCAGAGGAGAC 59.186 55.000 22.09 0.00 43.80 3.36
2226 2246 0.102120 CATCTGACGCAGAGGAGACC 59.898 60.000 13.74 0.00 43.80 3.85
2227 2247 0.033601 ATCTGACGCAGAGGAGACCT 60.034 55.000 13.55 0.00 44.08 3.85
2228 2248 0.962855 TCTGACGCAGAGGAGACCTG 60.963 60.000 5.59 0.00 35.39 4.00
2229 2249 1.228583 TGACGCAGAGGAGACCTGT 60.229 57.895 0.00 0.00 31.76 4.00
2230 2250 1.244697 TGACGCAGAGGAGACCTGTC 61.245 60.000 0.00 0.00 31.76 3.51
2231 2251 2.259875 GACGCAGAGGAGACCTGTCG 62.260 65.000 0.00 0.00 37.27 4.35
2232 2252 2.041115 CGCAGAGGAGACCTGTCGA 61.041 63.158 0.00 0.00 35.10 4.20
2233 2253 1.806568 GCAGAGGAGACCTGTCGAG 59.193 63.158 0.00 0.00 31.76 4.04
2234 2254 1.806568 CAGAGGAGACCTGTCGAGC 59.193 63.158 0.00 0.00 31.76 5.03
2235 2255 0.962855 CAGAGGAGACCTGTCGAGCA 60.963 60.000 0.00 0.00 31.76 4.26
2236 2256 0.679640 AGAGGAGACCTGTCGAGCAG 60.680 60.000 7.72 7.72 44.63 4.24
2255 2275 4.410492 CAGAGCGTGCATTTTCTTTACT 57.590 40.909 0.00 0.00 0.00 2.24
2256 2276 4.398247 CAGAGCGTGCATTTTCTTTACTC 58.602 43.478 0.00 0.00 0.00 2.59
2257 2277 3.437049 AGAGCGTGCATTTTCTTTACTCC 59.563 43.478 0.00 0.00 0.00 3.85
2258 2278 2.159627 AGCGTGCATTTTCTTTACTCCG 59.840 45.455 0.00 0.00 0.00 4.63
2259 2279 2.505866 CGTGCATTTTCTTTACTCCGC 58.494 47.619 0.00 0.00 0.00 5.54
2260 2280 2.095969 CGTGCATTTTCTTTACTCCGCA 60.096 45.455 0.00 0.00 0.00 5.69
2261 2281 3.492313 GTGCATTTTCTTTACTCCGCAG 58.508 45.455 0.00 0.00 0.00 5.18
2273 2293 3.390521 CCGCAGGCCCAGTACTGA 61.391 66.667 24.68 0.00 46.14 3.41
2274 2294 2.735772 CCGCAGGCCCAGTACTGAT 61.736 63.158 24.68 4.33 46.14 2.90
2275 2295 1.221840 CGCAGGCCCAGTACTGATT 59.778 57.895 24.68 3.67 36.86 2.57
2276 2296 0.392998 CGCAGGCCCAGTACTGATTT 60.393 55.000 24.68 4.02 36.86 2.17
2277 2297 1.839424 GCAGGCCCAGTACTGATTTT 58.161 50.000 24.68 4.38 36.86 1.82
2278 2298 2.171003 GCAGGCCCAGTACTGATTTTT 58.829 47.619 24.68 2.95 36.86 1.94
2300 2320 3.538841 GTTGTCTGGACGACGCAG 58.461 61.111 5.50 0.00 45.87 5.18
2315 2335 2.285368 CAGTCTGGGGGCCCTGTA 60.285 66.667 24.38 8.57 36.57 2.74
2316 2336 2.285442 AGTCTGGGGGCCCTGTAC 60.285 66.667 24.38 17.21 36.57 2.90
2317 2337 3.782443 GTCTGGGGGCCCTGTACG 61.782 72.222 24.38 6.25 36.57 3.67
2318 2338 4.000620 TCTGGGGGCCCTGTACGA 62.001 66.667 24.38 8.70 36.57 3.43
2319 2339 3.782443 CTGGGGGCCCTGTACGAC 61.782 72.222 24.38 3.83 36.94 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.031420 CCCTAAATGCATCACATCAGCG 60.031 50.000 0.00 0.00 38.34 5.18
99 100 1.082496 GCACTTGTCGTCTGCAAGC 60.082 57.895 5.12 0.00 45.09 4.01
116 117 1.294659 CCGTCTCCTCTGCAAGTTGC 61.295 60.000 21.17 21.17 45.29 4.17
119 120 2.659610 GCCGTCTCCTCTGCAAGT 59.340 61.111 0.00 0.00 33.76 3.16
127 128 0.543174 AACTGAAGAGGCCGTCTCCT 60.543 55.000 0.00 0.00 43.44 3.69
157 158 7.220740 CCCTTCTCTCTCTCACTTAACTTTTT 58.779 38.462 0.00 0.00 0.00 1.94
180 181 1.670059 TTCTCTCCTTTCCTTCCCCC 58.330 55.000 0.00 0.00 0.00 5.40
202 203 2.031012 CACGAGCAGCAAGGTCCA 59.969 61.111 0.00 0.00 41.71 4.02
216 217 2.755655 AGAGAAGTGGATGGTAGACACG 59.244 50.000 0.00 0.00 39.95 4.49
255 256 4.382320 GGGCCTACACAACGCCGA 62.382 66.667 0.84 0.00 43.99 5.54
258 259 2.045340 ATGGGGCCTACACAACGC 60.045 61.111 0.84 0.00 0.00 4.84
261 262 1.212688 CATCTGATGGGGCCTACACAA 59.787 52.381 9.82 0.00 0.00 3.33
263 264 0.109342 CCATCTGATGGGGCCTACAC 59.891 60.000 25.84 0.00 46.86 2.90
273 274 4.758674 CCCAATGTAAGCTACCATCTGATG 59.241 45.833 10.71 10.71 0.00 3.07
274 275 4.747931 GCCCAATGTAAGCTACCATCTGAT 60.748 45.833 0.00 0.00 0.00 2.90
275 276 3.433598 GCCCAATGTAAGCTACCATCTGA 60.434 47.826 0.00 0.00 0.00 3.27
365 366 4.142093 GCATGAGCTATGGTGGAAACAATT 60.142 41.667 0.00 0.00 38.69 2.32
367 368 2.754552 GCATGAGCTATGGTGGAAACAA 59.245 45.455 0.00 0.00 38.69 2.83
372 373 0.695462 AGGGCATGAGCTATGGTGGA 60.695 55.000 0.00 0.00 41.70 4.02
394 395 0.179202 CTCGTGTCTCTCACAGCTCG 60.179 60.000 0.00 0.00 46.44 5.03
401 402 2.982744 CTGGCGCTCGTGTCTCTCA 61.983 63.158 7.64 0.00 0.00 3.27
402 403 2.201436 TTCTGGCGCTCGTGTCTCTC 62.201 60.000 7.64 0.00 0.00 3.20
406 407 0.110644 CTTTTTCTGGCGCTCGTGTC 60.111 55.000 7.64 0.00 0.00 3.67
434 436 4.878397 CCCACAGATCAGTTGTATTTCCTC 59.122 45.833 0.00 0.00 0.00 3.71
450 452 1.371183 CTTCGTCTTGGCCCACAGA 59.629 57.895 0.00 0.00 0.00 3.41
451 453 1.672356 CCTTCGTCTTGGCCCACAG 60.672 63.158 0.00 0.00 0.00 3.66
519 521 1.209504 GGAATGGGAAGATGACCGACA 59.790 52.381 0.00 0.00 0.00 4.35
536 538 5.441718 AGCAACTTTCCTGATCTATGGAA 57.558 39.130 10.04 10.04 40.21 3.53
571 573 4.040376 GTCATTTACTCCATCGTCGGTAC 58.960 47.826 0.00 0.00 0.00 3.34
636 638 1.478510 CAGCAACGTGAGGTAGGAGAT 59.521 52.381 0.00 0.00 0.00 2.75
659 661 7.616673 CACGAGCATTCTATCTAGTTGAAAAG 58.383 38.462 0.00 0.00 0.00 2.27
696 708 4.661125 TGATATGATGTTTGCACGAAAGC 58.339 39.130 0.00 0.00 0.00 3.51
808 821 5.741510 GCGTATATCTAGATGATGCAGTGAC 59.258 44.000 15.79 0.00 36.65 3.67
831 844 5.288952 GTCTTTTAGTGGAAGATGTAGTCGC 59.711 44.000 0.00 0.00 35.74 5.19
916 929 6.189859 TCGAAATAGGGGAAGTTAGTAGTGA 58.810 40.000 0.00 0.00 0.00 3.41
930 943 5.071115 AGAGAAGGAAGGAATCGAAATAGGG 59.929 44.000 0.00 0.00 0.00 3.53
971 984 2.359981 ATGGACCTTCATGCATCCAG 57.640 50.000 10.09 3.04 44.28 3.86
990 1003 1.289160 AGCCAGGCATCTTCACCTTA 58.711 50.000 15.80 0.00 32.56 2.69
1108 1121 6.418057 ACAACAATTGGGTAACAACATCAT 57.582 33.333 10.83 0.00 42.94 2.45
1125 1138 6.422333 TCCTGCAATAGAATATGGACAACAA 58.578 36.000 0.00 0.00 0.00 2.83
1319 1332 4.461431 TGCTTGACATCTTGAAGCATCATT 59.539 37.500 0.00 0.00 45.46 2.57
1345 1358 5.010213 ACTCCGCCTCAAGATCTTATTACTC 59.990 44.000 7.86 0.00 0.00 2.59
1369 1382 7.148154 CGGAATATTTTGGGATGTTACAGACAA 60.148 37.037 0.00 0.00 42.62 3.18
1432 1445 2.040947 TCCCTTACATGATGCAACCACA 59.959 45.455 0.00 0.00 0.00 4.17
1444 1457 1.568504 TTGAGCCGAGTCCCTTACAT 58.431 50.000 0.00 0.00 0.00 2.29
1491 1504 6.767524 ATTTATGACTTGTATTGCCGGAAA 57.232 33.333 5.05 0.00 0.00 3.13
1510 1523 7.260558 TCAAACGGTCAATACACACAATTTA 57.739 32.000 0.00 0.00 0.00 1.40
1514 1527 4.876679 TCTTCAAACGGTCAATACACACAA 59.123 37.500 0.00 0.00 0.00 3.33
1516 1529 5.202640 GTTCTTCAAACGGTCAATACACAC 58.797 41.667 0.00 0.00 0.00 3.82
1519 1532 6.627395 AATGTTCTTCAAACGGTCAATACA 57.373 33.333 0.00 0.00 0.00 2.29
1520 1533 7.749126 CCTAAATGTTCTTCAAACGGTCAATAC 59.251 37.037 0.00 0.00 0.00 1.89
1521 1534 7.574217 GCCTAAATGTTCTTCAAACGGTCAATA 60.574 37.037 0.00 0.00 0.00 1.90
1529 1542 4.767409 AGAGGGCCTAAATGTTCTTCAAAC 59.233 41.667 5.73 0.00 0.00 2.93
1565 1578 9.859152 TTTTCCTATTCCCATGTTTTGAAAATT 57.141 25.926 0.00 0.00 0.00 1.82
1584 1597 9.639563 TGCCATTCATATTCTGTATTTTTCCTA 57.360 29.630 0.00 0.00 0.00 2.94
1630 1645 6.899089 TGGCATCAAAACTCTATCCTAATCA 58.101 36.000 0.00 0.00 0.00 2.57
1679 1694 8.246180 TGAAAATCTAGCATTCATTCAAACCTC 58.754 33.333 0.00 0.00 0.00 3.85
1703 1718 8.106462 TGGAATAAGTGTACTCCATTTCATTGA 58.894 33.333 0.00 0.00 32.97 2.57
1766 1781 9.201989 GATTTTGGAGGGTTAGAATCCTTAAAT 57.798 33.333 0.00 3.44 40.40 1.40
1767 1782 7.618117 GGATTTTGGAGGGTTAGAATCCTTAAA 59.382 37.037 0.00 0.00 40.40 1.52
1802 1817 2.241281 TCTGGGTCCTTGATTACGGA 57.759 50.000 0.00 0.00 0.00 4.69
1805 1820 5.990668 ACACTTATCTGGGTCCTTGATTAC 58.009 41.667 3.23 0.00 0.00 1.89
1866 1883 5.619220 ACTTGCCATCAAAAGCCATAAAAA 58.381 33.333 0.00 0.00 0.00 1.94
1867 1884 5.226194 ACTTGCCATCAAAAGCCATAAAA 57.774 34.783 0.00 0.00 0.00 1.52
1868 1885 4.888326 ACTTGCCATCAAAAGCCATAAA 57.112 36.364 0.00 0.00 0.00 1.40
1869 1886 4.888326 AACTTGCCATCAAAAGCCATAA 57.112 36.364 0.00 0.00 0.00 1.90
1870 1887 4.888326 AAACTTGCCATCAAAAGCCATA 57.112 36.364 0.00 0.00 0.00 2.74
1871 1888 3.775261 AAACTTGCCATCAAAAGCCAT 57.225 38.095 0.00 0.00 0.00 4.40
1872 1889 3.640967 AGTAAACTTGCCATCAAAAGCCA 59.359 39.130 0.00 0.00 0.00 4.75
1873 1890 3.989817 CAGTAAACTTGCCATCAAAAGCC 59.010 43.478 0.00 0.00 0.00 4.35
1874 1891 4.870363 TCAGTAAACTTGCCATCAAAAGC 58.130 39.130 0.00 0.00 0.00 3.51
1875 1892 6.364165 CACATCAGTAAACTTGCCATCAAAAG 59.636 38.462 0.00 0.00 0.00 2.27
1880 1897 4.095483 CCTCACATCAGTAAACTTGCCATC 59.905 45.833 0.00 0.00 0.00 3.51
1897 1914 4.520111 CCTCAAAACATTGTCATCCTCACA 59.480 41.667 0.00 0.00 0.00 3.58
1911 1928 2.397044 AATGGCCTTCCCTCAAAACA 57.603 45.000 3.32 0.00 0.00 2.83
1912 1929 2.163613 CGTAATGGCCTTCCCTCAAAAC 59.836 50.000 3.32 0.00 0.00 2.43
1930 1948 4.748277 AAGCTCAATAAACCTAGCCGTA 57.252 40.909 0.00 0.00 35.54 4.02
1932 1950 5.353123 TGTTTAAGCTCAATAAACCTAGCCG 59.647 40.000 14.14 0.00 40.75 5.52
1947 1965 8.680903 CCAGATGATGTAATTCTTGTTTAAGCT 58.319 33.333 0.00 0.00 33.82 3.74
1948 1966 8.677300 TCCAGATGATGTAATTCTTGTTTAAGC 58.323 33.333 0.00 0.00 33.82 3.09
1953 1971 8.641498 AACTTCCAGATGATGTAATTCTTGTT 57.359 30.769 0.00 0.00 31.55 2.83
1954 1972 8.641498 AAACTTCCAGATGATGTAATTCTTGT 57.359 30.769 0.00 0.00 31.55 3.16
1960 1978 9.178758 GGTTTCTAAACTTCCAGATGATGTAAT 57.821 33.333 5.62 0.00 38.89 1.89
1961 1979 8.160765 TGGTTTCTAAACTTCCAGATGATGTAA 58.839 33.333 5.62 0.00 38.89 2.41
1962 1980 7.685481 TGGTTTCTAAACTTCCAGATGATGTA 58.315 34.615 5.62 0.00 38.89 2.29
1963 1981 6.542821 TGGTTTCTAAACTTCCAGATGATGT 58.457 36.000 5.62 0.00 38.89 3.06
1964 1982 6.881065 TCTGGTTTCTAAACTTCCAGATGATG 59.119 38.462 7.94 0.00 46.20 3.07
1965 1983 7.020827 TCTGGTTTCTAAACTTCCAGATGAT 57.979 36.000 7.94 0.00 46.20 2.45
1966 1984 6.433847 TCTGGTTTCTAAACTTCCAGATGA 57.566 37.500 7.94 0.00 46.20 2.92
1971 1989 4.578928 GCTTGTCTGGTTTCTAAACTTCCA 59.421 41.667 5.62 0.00 38.89 3.53
1976 1994 3.253432 CCTGGCTTGTCTGGTTTCTAAAC 59.747 47.826 0.00 0.00 38.17 2.01
1978 1996 2.814097 GCCTGGCTTGTCTGGTTTCTAA 60.814 50.000 12.43 0.00 0.00 2.10
1979 1997 1.271379 GCCTGGCTTGTCTGGTTTCTA 60.271 52.381 12.43 0.00 0.00 2.10
1981 1999 0.538287 AGCCTGGCTTGTCTGGTTTC 60.538 55.000 17.22 0.00 33.89 2.78
1996 2014 1.882989 GCTCTTGGACTGACGAGCCT 61.883 60.000 0.00 0.00 42.20 4.58
2004 2024 3.409026 AGGTTTGTAGCTCTTGGACTG 57.591 47.619 0.00 0.00 0.00 3.51
2036 2056 5.757886 CTCTCATGTGCTAGCTAGTTACTC 58.242 45.833 21.62 5.55 0.00 2.59
2038 2058 4.295051 GCTCTCATGTGCTAGCTAGTTAC 58.705 47.826 21.62 19.49 32.18 2.50
2056 2076 4.070552 GTTCAGGACGGCCGCTCT 62.071 66.667 28.58 20.33 39.96 4.09
2068 2088 2.816958 ATCTGCCGCTGCGTTCAG 60.817 61.111 25.45 25.45 41.78 3.02
2069 2089 2.857575 ATCATCTGCCGCTGCGTTCA 62.858 55.000 21.59 16.34 41.78 3.18
2070 2090 2.098842 GATCATCTGCCGCTGCGTTC 62.099 60.000 21.59 12.53 41.78 3.95
2071 2091 2.124983 ATCATCTGCCGCTGCGTT 60.125 55.556 21.59 0.00 41.78 4.84
2072 2092 2.587194 GATCATCTGCCGCTGCGT 60.587 61.111 21.59 0.00 41.78 5.24
2073 2093 3.699484 CGATCATCTGCCGCTGCG 61.699 66.667 16.34 16.34 41.78 5.18
2074 2094 4.010414 GCGATCATCTGCCGCTGC 62.010 66.667 0.00 0.00 44.83 5.25
2078 2098 1.723542 GATAGTTGCGATCATCTGCCG 59.276 52.381 0.00 0.00 0.00 5.69
2079 2099 2.072298 GGATAGTTGCGATCATCTGCC 58.928 52.381 0.00 0.00 0.00 4.85
2080 2100 2.759191 TGGATAGTTGCGATCATCTGC 58.241 47.619 0.00 0.00 0.00 4.26
2081 2101 3.496130 GGTTGGATAGTTGCGATCATCTG 59.504 47.826 0.00 0.00 0.00 2.90
2082 2102 3.733337 GGTTGGATAGTTGCGATCATCT 58.267 45.455 0.00 0.00 0.00 2.90
2083 2103 2.476619 CGGTTGGATAGTTGCGATCATC 59.523 50.000 0.00 0.00 0.00 2.92
2084 2104 2.483876 CGGTTGGATAGTTGCGATCAT 58.516 47.619 0.00 0.00 0.00 2.45
2085 2105 1.472552 CCGGTTGGATAGTTGCGATCA 60.473 52.381 0.00 0.00 37.49 2.92
2086 2106 1.217882 CCGGTTGGATAGTTGCGATC 58.782 55.000 0.00 0.00 37.49 3.69
2087 2107 0.539986 ACCGGTTGGATAGTTGCGAT 59.460 50.000 0.00 0.00 39.21 4.58
2088 2108 0.108520 GACCGGTTGGATAGTTGCGA 60.109 55.000 9.42 0.00 39.21 5.10
2089 2109 1.418342 CGACCGGTTGGATAGTTGCG 61.418 60.000 14.66 1.98 39.21 4.85
2090 2110 0.390735 ACGACCGGTTGGATAGTTGC 60.391 55.000 25.74 0.00 39.21 4.17
2091 2111 1.636988 GACGACCGGTTGGATAGTTG 58.363 55.000 25.74 0.00 39.21 3.16
2092 2112 0.533951 GGACGACCGGTTGGATAGTT 59.466 55.000 25.74 3.21 39.21 2.24
2093 2113 0.612732 TGGACGACCGGTTGGATAGT 60.613 55.000 25.74 11.06 39.21 2.12
2094 2114 0.102481 CTGGACGACCGGTTGGATAG 59.898 60.000 25.74 15.35 39.21 2.08
2095 2115 1.324740 CCTGGACGACCGGTTGGATA 61.325 60.000 25.74 10.00 40.75 2.59
2096 2116 2.656069 CCTGGACGACCGGTTGGAT 61.656 63.158 25.74 5.65 40.75 3.41
2097 2117 3.307906 CCTGGACGACCGGTTGGA 61.308 66.667 25.74 8.39 40.75 3.53
2104 2124 4.436998 CACCTCGCCTGGACGACC 62.437 72.222 8.74 0.00 37.09 4.79
2105 2125 2.615262 GATCACCTCGCCTGGACGAC 62.615 65.000 8.74 0.00 37.09 4.34
2106 2126 2.362503 ATCACCTCGCCTGGACGA 60.363 61.111 11.60 11.60 40.36 4.20
2107 2127 2.105128 GATCACCTCGCCTGGACG 59.895 66.667 0.00 0.34 0.00 4.79
2108 2128 1.142748 CTGATCACCTCGCCTGGAC 59.857 63.158 0.00 0.00 0.00 4.02
2109 2129 1.305297 ACTGATCACCTCGCCTGGA 60.305 57.895 0.00 0.00 0.00 3.86
2110 2130 1.153489 CACTGATCACCTCGCCTGG 60.153 63.158 0.00 0.00 0.00 4.45
2111 2131 1.812922 GCACTGATCACCTCGCCTG 60.813 63.158 0.00 0.00 0.00 4.85
2112 2132 2.581354 GCACTGATCACCTCGCCT 59.419 61.111 0.00 0.00 0.00 5.52
2113 2133 2.887568 CGCACTGATCACCTCGCC 60.888 66.667 0.00 0.00 0.00 5.54
2114 2134 2.613739 TAGCGCACTGATCACCTCGC 62.614 60.000 11.47 17.75 42.46 5.03
2115 2135 0.179137 TTAGCGCACTGATCACCTCG 60.179 55.000 11.47 0.00 0.00 4.63
2116 2136 1.929836 CTTTAGCGCACTGATCACCTC 59.070 52.381 11.47 0.00 0.00 3.85
2117 2137 1.276421 ACTTTAGCGCACTGATCACCT 59.724 47.619 11.47 0.00 0.00 4.00
2118 2138 1.726853 ACTTTAGCGCACTGATCACC 58.273 50.000 11.47 0.00 0.00 4.02
2119 2139 2.222596 CGAACTTTAGCGCACTGATCAC 60.223 50.000 11.47 0.00 0.00 3.06
2120 2140 1.992667 CGAACTTTAGCGCACTGATCA 59.007 47.619 11.47 0.00 0.00 2.92
2121 2141 1.993370 ACGAACTTTAGCGCACTGATC 59.007 47.619 11.47 0.00 0.00 2.92
2122 2142 2.080286 ACGAACTTTAGCGCACTGAT 57.920 45.000 11.47 0.00 0.00 2.90
2123 2143 1.790623 GAACGAACTTTAGCGCACTGA 59.209 47.619 11.47 0.00 0.00 3.41
2124 2144 1.525197 TGAACGAACTTTAGCGCACTG 59.475 47.619 11.47 0.00 0.00 3.66
2125 2145 1.792949 CTGAACGAACTTTAGCGCACT 59.207 47.619 11.47 0.00 0.00 4.40
2126 2146 1.790623 TCTGAACGAACTTTAGCGCAC 59.209 47.619 11.47 0.00 0.00 5.34
2127 2147 1.790623 GTCTGAACGAACTTTAGCGCA 59.209 47.619 11.47 0.00 0.00 6.09
2128 2148 1.126296 GGTCTGAACGAACTTTAGCGC 59.874 52.381 0.00 0.00 0.00 5.92
2129 2149 2.400399 TGGTCTGAACGAACTTTAGCG 58.600 47.619 0.00 0.00 0.00 4.26
2130 2150 2.737252 CCTGGTCTGAACGAACTTTAGC 59.263 50.000 0.00 0.00 0.00 3.09
2131 2151 4.252971 TCCTGGTCTGAACGAACTTTAG 57.747 45.455 0.00 0.00 0.00 1.85
2132 2152 4.675976 TTCCTGGTCTGAACGAACTTTA 57.324 40.909 0.00 0.00 0.00 1.85
2133 2153 3.553828 TTCCTGGTCTGAACGAACTTT 57.446 42.857 0.00 0.00 0.00 2.66
2134 2154 3.118371 ACTTTCCTGGTCTGAACGAACTT 60.118 43.478 0.00 0.00 0.00 2.66
2135 2155 2.434702 ACTTTCCTGGTCTGAACGAACT 59.565 45.455 0.00 0.00 0.00 3.01
2136 2156 2.544267 CACTTTCCTGGTCTGAACGAAC 59.456 50.000 0.00 0.00 0.00 3.95
2137 2157 2.484770 CCACTTTCCTGGTCTGAACGAA 60.485 50.000 0.00 0.00 0.00 3.85
2138 2158 1.070134 CCACTTTCCTGGTCTGAACGA 59.930 52.381 0.00 0.00 0.00 3.85
2139 2159 1.070134 TCCACTTTCCTGGTCTGAACG 59.930 52.381 0.00 0.00 32.50 3.95
2140 2160 2.158813 TGTCCACTTTCCTGGTCTGAAC 60.159 50.000 0.00 0.00 32.50 3.18
2141 2161 2.123589 TGTCCACTTTCCTGGTCTGAA 58.876 47.619 0.00 0.00 32.50 3.02
2142 2162 1.801242 TGTCCACTTTCCTGGTCTGA 58.199 50.000 0.00 0.00 32.50 3.27
2143 2163 2.867109 ATGTCCACTTTCCTGGTCTG 57.133 50.000 0.00 0.00 32.50 3.51
2144 2164 3.248024 TGTATGTCCACTTTCCTGGTCT 58.752 45.455 0.00 0.00 32.50 3.85
2145 2165 3.695830 TGTATGTCCACTTTCCTGGTC 57.304 47.619 0.00 0.00 32.50 4.02
2146 2166 3.369471 CGATGTATGTCCACTTTCCTGGT 60.369 47.826 0.00 0.00 32.50 4.00
2147 2167 3.198068 CGATGTATGTCCACTTTCCTGG 58.802 50.000 0.00 0.00 0.00 4.45
2148 2168 3.198068 CCGATGTATGTCCACTTTCCTG 58.802 50.000 0.00 0.00 0.00 3.86
2149 2169 2.838202 ACCGATGTATGTCCACTTTCCT 59.162 45.455 0.00 0.00 0.00 3.36
2150 2170 3.195661 GACCGATGTATGTCCACTTTCC 58.804 50.000 0.00 0.00 0.00 3.13
2151 2171 2.858344 CGACCGATGTATGTCCACTTTC 59.142 50.000 0.00 0.00 0.00 2.62
2152 2172 2.494471 TCGACCGATGTATGTCCACTTT 59.506 45.455 0.00 0.00 0.00 2.66
2153 2173 2.097036 TCGACCGATGTATGTCCACTT 58.903 47.619 0.00 0.00 0.00 3.16
2154 2174 1.758936 TCGACCGATGTATGTCCACT 58.241 50.000 0.00 0.00 0.00 4.00
2155 2175 2.795175 ATCGACCGATGTATGTCCAC 57.205 50.000 3.91 0.00 32.98 4.02
2156 2176 3.215975 TGTATCGACCGATGTATGTCCA 58.784 45.455 14.42 0.00 36.17 4.02
2157 2177 3.909776 TGTATCGACCGATGTATGTCC 57.090 47.619 14.42 0.00 36.17 4.02
2158 2178 4.617223 CACATGTATCGACCGATGTATGTC 59.383 45.833 21.81 0.00 38.83 3.06
2159 2179 4.277423 TCACATGTATCGACCGATGTATGT 59.723 41.667 20.28 20.28 40.09 2.29
2160 2180 4.794169 TCACATGTATCGACCGATGTATG 58.206 43.478 14.42 17.51 36.38 2.39
2161 2181 5.447624 TTCACATGTATCGACCGATGTAT 57.552 39.130 14.42 6.34 36.17 2.29
2162 2182 4.904253 TTCACATGTATCGACCGATGTA 57.096 40.909 14.42 4.40 36.17 2.29
2163 2183 3.793797 TTCACATGTATCGACCGATGT 57.206 42.857 14.42 3.18 36.17 3.06
2164 2184 4.621460 GGTATTCACATGTATCGACCGATG 59.379 45.833 14.42 2.57 36.17 3.84
2165 2185 4.321750 GGGTATTCACATGTATCGACCGAT 60.322 45.833 9.93 9.93 38.54 4.18
2166 2186 3.005050 GGGTATTCACATGTATCGACCGA 59.995 47.826 0.00 0.00 0.00 4.69
2167 2187 3.005472 AGGGTATTCACATGTATCGACCG 59.995 47.826 0.00 0.00 0.00 4.79
2168 2188 4.602340 AGGGTATTCACATGTATCGACC 57.398 45.455 0.00 4.32 0.00 4.79
2169 2189 5.357257 ACAAGGGTATTCACATGTATCGAC 58.643 41.667 0.00 0.00 0.00 4.20
2170 2190 5.452776 GGACAAGGGTATTCACATGTATCGA 60.453 44.000 0.00 0.00 0.00 3.59
2171 2191 4.750098 GGACAAGGGTATTCACATGTATCG 59.250 45.833 0.00 0.00 0.00 2.92
2172 2192 5.930135 AGGACAAGGGTATTCACATGTATC 58.070 41.667 0.00 0.00 0.00 2.24
2173 2193 5.975988 AGGACAAGGGTATTCACATGTAT 57.024 39.130 0.00 0.00 0.00 2.29
2174 2194 5.013704 ACAAGGACAAGGGTATTCACATGTA 59.986 40.000 0.00 0.00 0.00 2.29
2175 2195 4.202567 ACAAGGACAAGGGTATTCACATGT 60.203 41.667 0.00 0.00 0.00 3.21
2176 2196 4.156556 CACAAGGACAAGGGTATTCACATG 59.843 45.833 0.00 0.00 0.00 3.21
2177 2197 4.335416 CACAAGGACAAGGGTATTCACAT 58.665 43.478 0.00 0.00 0.00 3.21
2178 2198 3.497763 CCACAAGGACAAGGGTATTCACA 60.498 47.826 0.00 0.00 36.89 3.58
2179 2199 3.081804 CCACAAGGACAAGGGTATTCAC 58.918 50.000 0.00 0.00 36.89 3.18
2180 2200 2.041081 CCCACAAGGACAAGGGTATTCA 59.959 50.000 0.00 0.00 38.24 2.57
2181 2201 2.620627 CCCCACAAGGACAAGGGTATTC 60.621 54.545 0.00 0.00 39.76 1.75
2182 2202 1.357761 CCCCACAAGGACAAGGGTATT 59.642 52.381 0.00 0.00 39.76 1.89
2183 2203 0.999712 CCCCACAAGGACAAGGGTAT 59.000 55.000 0.00 0.00 39.76 2.73
2184 2204 2.470311 CCCCACAAGGACAAGGGTA 58.530 57.895 0.00 0.00 39.76 3.69
2185 2205 1.699930 ACCCCACAAGGACAAGGGT 60.700 57.895 0.00 0.00 46.40 4.34
2186 2206 1.228552 CACCCCACAAGGACAAGGG 60.229 63.158 0.00 0.00 43.88 3.95
2187 2207 1.903404 GCACCCCACAAGGACAAGG 60.903 63.158 0.00 0.00 38.24 3.61
2188 2208 1.152777 TGCACCCCACAAGGACAAG 60.153 57.895 0.00 0.00 38.24 3.16
2189 2209 1.454847 GTGCACCCCACAAGGACAA 60.455 57.895 5.22 0.00 44.06 3.18
2190 2210 2.194597 GTGCACCCCACAAGGACA 59.805 61.111 5.22 0.00 44.06 4.02
2197 2217 2.034879 CGTCAGATGTGCACCCCAC 61.035 63.158 15.69 3.02 44.90 4.61
2198 2218 2.347114 CGTCAGATGTGCACCCCA 59.653 61.111 15.69 0.00 0.00 4.96
2199 2219 3.127533 GCGTCAGATGTGCACCCC 61.128 66.667 15.69 5.89 0.00 4.95
2200 2220 2.358615 TGCGTCAGATGTGCACCC 60.359 61.111 15.69 6.29 32.86 4.61
2201 2221 1.357258 CTCTGCGTCAGATGTGCACC 61.357 60.000 15.69 0.00 39.92 5.01
2202 2222 1.357258 CCTCTGCGTCAGATGTGCAC 61.357 60.000 10.75 10.75 39.92 4.57
2203 2223 1.079612 CCTCTGCGTCAGATGTGCA 60.080 57.895 9.47 0.00 39.92 4.57
2204 2224 0.805322 CTCCTCTGCGTCAGATGTGC 60.805 60.000 9.47 0.00 39.92 4.57
2205 2225 0.813821 TCTCCTCTGCGTCAGATGTG 59.186 55.000 9.47 8.28 39.92 3.21
2206 2226 0.814457 GTCTCCTCTGCGTCAGATGT 59.186 55.000 9.47 0.00 39.92 3.06
2207 2227 0.102120 GGTCTCCTCTGCGTCAGATG 59.898 60.000 9.47 7.62 39.92 2.90
2208 2228 0.033601 AGGTCTCCTCTGCGTCAGAT 60.034 55.000 9.47 0.00 39.92 2.90
2209 2229 0.962855 CAGGTCTCCTCTGCGTCAGA 60.963 60.000 8.83 8.83 38.25 3.27
2210 2230 1.247419 ACAGGTCTCCTCTGCGTCAG 61.247 60.000 1.02 1.02 35.78 3.51
2211 2231 1.228583 ACAGGTCTCCTCTGCGTCA 60.229 57.895 0.00 0.00 35.78 4.35
2212 2232 1.509004 GACAGGTCTCCTCTGCGTC 59.491 63.158 0.00 0.00 35.78 5.19
2213 2233 2.336478 CGACAGGTCTCCTCTGCGT 61.336 63.158 0.00 0.00 35.78 5.24
2214 2234 1.987704 CTCGACAGGTCTCCTCTGCG 61.988 65.000 0.00 0.00 35.78 5.18
2215 2235 1.806568 CTCGACAGGTCTCCTCTGC 59.193 63.158 0.00 0.00 35.78 4.26
2216 2236 0.962855 TGCTCGACAGGTCTCCTCTG 60.963 60.000 0.00 0.00 38.16 3.35
2217 2237 0.679640 CTGCTCGACAGGTCTCCTCT 60.680 60.000 7.01 0.00 43.19 3.69
2218 2238 1.806568 CTGCTCGACAGGTCTCCTC 59.193 63.158 7.01 0.00 43.19 3.71
2219 2239 4.010575 CTGCTCGACAGGTCTCCT 57.989 61.111 7.01 0.00 43.19 3.69
2234 2254 4.398247 GAGTAAAGAAAATGCACGCTCTG 58.602 43.478 0.00 0.00 0.00 3.35
2235 2255 3.437049 GGAGTAAAGAAAATGCACGCTCT 59.563 43.478 0.00 0.00 0.00 4.09
2236 2256 3.725010 CGGAGTAAAGAAAATGCACGCTC 60.725 47.826 0.00 0.00 0.00 5.03
2237 2257 2.159627 CGGAGTAAAGAAAATGCACGCT 59.840 45.455 0.00 0.00 0.00 5.07
2238 2258 2.505866 CGGAGTAAAGAAAATGCACGC 58.494 47.619 0.00 0.00 0.00 5.34
2239 2259 2.095969 TGCGGAGTAAAGAAAATGCACG 60.096 45.455 0.00 0.00 0.00 5.34
2240 2260 3.492313 CTGCGGAGTAAAGAAAATGCAC 58.508 45.455 0.00 0.00 0.00 4.57
2241 2261 2.487762 CCTGCGGAGTAAAGAAAATGCA 59.512 45.455 2.36 0.00 0.00 3.96
2242 2262 2.732282 GCCTGCGGAGTAAAGAAAATGC 60.732 50.000 2.36 0.00 0.00 3.56
2243 2263 2.159379 GGCCTGCGGAGTAAAGAAAATG 60.159 50.000 2.36 0.00 0.00 2.32
2244 2264 2.092323 GGCCTGCGGAGTAAAGAAAAT 58.908 47.619 2.36 0.00 0.00 1.82
2245 2265 1.530323 GGCCTGCGGAGTAAAGAAAA 58.470 50.000 2.36 0.00 0.00 2.29
2246 2266 0.322187 GGGCCTGCGGAGTAAAGAAA 60.322 55.000 0.84 0.00 0.00 2.52
2247 2267 1.298667 GGGCCTGCGGAGTAAAGAA 59.701 57.895 0.84 0.00 0.00 2.52
2248 2268 1.899437 CTGGGCCTGCGGAGTAAAGA 61.899 60.000 4.53 0.00 0.00 2.52
2249 2269 1.450312 CTGGGCCTGCGGAGTAAAG 60.450 63.158 4.53 0.00 0.00 1.85
2250 2270 0.905809 TACTGGGCCTGCGGAGTAAA 60.906 55.000 10.71 0.00 0.00 2.01
2251 2271 1.305465 TACTGGGCCTGCGGAGTAA 60.305 57.895 10.71 0.00 0.00 2.24
2252 2272 2.056223 GTACTGGGCCTGCGGAGTA 61.056 63.158 10.71 3.36 0.00 2.59
2253 2273 3.391382 GTACTGGGCCTGCGGAGT 61.391 66.667 10.71 4.43 0.00 3.85
2254 2274 3.077556 AGTACTGGGCCTGCGGAG 61.078 66.667 10.71 0.00 0.00 4.63
2255 2275 3.390521 CAGTACTGGGCCTGCGGA 61.391 66.667 15.49 0.00 0.00 5.54
2256 2276 2.257409 AATCAGTACTGGGCCTGCGG 62.257 60.000 22.48 0.00 0.00 5.69
2257 2277 0.392998 AAATCAGTACTGGGCCTGCG 60.393 55.000 22.48 0.00 0.00 5.18
2258 2278 1.839424 AAAATCAGTACTGGGCCTGC 58.161 50.000 22.48 0.00 0.00 4.85
2286 2306 1.442857 CAGACTGCGTCGTCCAGAC 60.443 63.158 6.84 1.43 46.16 3.51
2287 2307 2.626780 CCAGACTGCGTCGTCCAGA 61.627 63.158 6.84 0.00 37.67 3.86
2288 2308 2.126307 CCAGACTGCGTCGTCCAG 60.126 66.667 0.00 0.00 37.67 3.86
2289 2309 3.680786 CCCAGACTGCGTCGTCCA 61.681 66.667 0.00 0.00 37.67 4.02
2290 2310 4.436998 CCCCAGACTGCGTCGTCC 62.437 72.222 0.00 0.00 37.67 4.79
2291 2311 4.436998 CCCCCAGACTGCGTCGTC 62.437 72.222 0.00 0.00 37.67 4.20
2298 2318 2.285368 TACAGGGCCCCCAGACTG 60.285 66.667 21.43 12.09 38.92 3.51
2299 2319 2.285442 GTACAGGGCCCCCAGACT 60.285 66.667 21.43 0.00 38.92 3.24
2300 2320 3.782443 CGTACAGGGCCCCCAGAC 61.782 72.222 21.43 11.04 38.92 3.51
2301 2321 4.000620 TCGTACAGGGCCCCCAGA 62.001 66.667 21.43 8.67 38.92 3.86
2302 2322 3.782443 GTCGTACAGGGCCCCCAG 61.782 72.222 21.43 12.04 38.92 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.