Multiple sequence alignment - TraesCS7B01G318800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G318800 chr7B 100.000 3706 0 0 1 3706 568650011 568653716 0.000000e+00 6844
1 TraesCS7B01G318800 chr7B 84.094 635 79 5 1563 2187 568491105 568491727 8.860000e-166 593
2 TraesCS7B01G318800 chr7B 83.239 352 43 11 2147 2486 568619161 568619508 3.590000e-80 309
3 TraesCS7B01G318800 chr7B 86.957 184 20 3 3519 3698 589920079 589920262 1.740000e-48 204
4 TraesCS7B01G318800 chr7B 82.456 228 29 7 2331 2554 568491968 568492188 4.890000e-44 189
5 TraesCS7B01G318800 chr7D 93.568 3234 151 19 494 3703 530107895 530111095 0.000000e+00 4767
6 TraesCS7B01G318800 chr7D 93.028 545 26 2 1 534 530107355 530107898 0.000000e+00 785
7 TraesCS7B01G318800 chr7D 88.732 213 22 2 444 655 530107603 530107814 3.670000e-65 259
8 TraesCS7B01G318800 chr7D 86.667 195 17 7 3514 3702 509573689 509573498 1.350000e-49 207
9 TraesCS7B01G318800 chr7D 85.000 200 20 8 3510 3701 518768995 518769192 1.050000e-45 195
10 TraesCS7B01G318800 chr7D 85.841 113 9 2 3055 3160 500615661 500615549 3.030000e-21 113
11 TraesCS7B01G318800 chr7A 92.907 3299 155 27 444 3706 610438239 610441494 0.000000e+00 4723
12 TraesCS7B01G318800 chr7A 82.220 838 109 20 1736 2554 609565250 609566066 0.000000e+00 686
13 TraesCS7B01G318800 chr7A 95.444 417 19 0 1 417 610437991 610438407 0.000000e+00 665
14 TraesCS7B01G318800 chr7A 83.534 249 21 9 3472 3701 626992580 626992333 8.060000e-52 215
15 TraesCS7B01G318800 chr7A 87.736 106 8 4 3501 3602 627045127 627045023 6.500000e-23 119
16 TraesCS7B01G318800 chr7A 85.841 113 9 3 3055 3160 566528077 566527965 3.030000e-21 113
17 TraesCS7B01G318800 chr4B 99.566 461 2 0 2696 3156 447642143 447641683 0.000000e+00 841
18 TraesCS7B01G318800 chr5D 86.667 195 17 7 3515 3701 42081589 42081396 1.350000e-49 207
19 TraesCS7B01G318800 chr2B 92.222 90 5 2 3514 3602 127790028 127789940 3.890000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G318800 chr7B 568650011 568653716 3705 False 6844 6844 100.0000 1 3706 1 chr7B.!!$F2 3705
1 TraesCS7B01G318800 chr7B 568491105 568492188 1083 False 391 593 83.2750 1563 2554 2 chr7B.!!$F4 991
2 TraesCS7B01G318800 chr7D 530107355 530111095 3740 False 1937 4767 91.7760 1 3703 3 chr7D.!!$F2 3702
3 TraesCS7B01G318800 chr7A 610437991 610441494 3503 False 2694 4723 94.1755 1 3706 2 chr7A.!!$F2 3705
4 TraesCS7B01G318800 chr7A 609565250 609566066 816 False 686 686 82.2200 1736 2554 1 chr7A.!!$F1 818

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
435 447 0.323816 TTATTGGCATGGCAACGGGA 60.324 50.0 34.01 18.03 42.51 5.14 F
1671 1724 0.259647 CCAATGGAGGGCTGATTCCA 59.740 55.0 0.00 0.00 46.79 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2234 2442 1.067295 TGTTCTGTGATGCCCCTCTT 58.933 50.0 0.00 0.0 0.0 2.85 R
3303 3546 0.167908 CGCGCTGTTGGATTTGCTTA 59.832 50.0 5.56 0.0 0.0 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 119 4.451900 TGAGAAAGGTTCTTGTCCACTTC 58.548 43.478 0.00 0.00 40.87 3.01
283 284 4.126437 AGCCAAATGCAAAGTACCAAAAC 58.874 39.130 0.00 0.00 44.83 2.43
340 341 4.456911 TGCAAAATTCAGAGGTGCTCTTAG 59.543 41.667 0.00 0.00 38.99 2.18
348 349 3.896888 CAGAGGTGCTCTTAGATCCATCT 59.103 47.826 0.00 0.00 38.99 2.90
353 354 7.292120 AGAGGTGCTCTTAGATCCATCTAAAAT 59.708 37.037 9.74 0.00 45.69 1.82
431 443 2.431782 ACCTGATTATTGGCATGGCAAC 59.568 45.455 34.01 22.13 0.00 4.17
435 447 0.323816 TTATTGGCATGGCAACGGGA 60.324 50.000 34.01 18.03 42.51 5.14
482 494 5.465056 CCAAATGCAAAGTACCAAAATCGTT 59.535 36.000 0.00 0.00 0.00 3.85
484 496 7.405769 CAAATGCAAAGTACCAAAATCGTTTT 58.594 30.769 0.00 0.00 0.00 2.43
514 526 7.222417 CACATTCTTGTTTGCACTTTACAATGA 59.778 33.333 10.14 5.52 32.34 2.57
529 578 7.653311 ACTTTACAATGAAAAATTCAGAGGTGC 59.347 33.333 0.00 0.00 43.98 5.01
579 629 5.016173 CCATAACTTCTGGGAAATTCCACA 58.984 41.667 14.68 8.48 38.64 4.17
587 637 2.962421 TGGGAAATTCCACAACCAGAAC 59.038 45.455 14.68 0.00 38.64 3.01
588 638 2.962421 GGGAAATTCCACAACCAGAACA 59.038 45.455 14.68 0.00 38.64 3.18
589 639 3.578282 GGGAAATTCCACAACCAGAACAT 59.422 43.478 14.68 0.00 38.64 2.71
590 640 4.770010 GGGAAATTCCACAACCAGAACATA 59.230 41.667 14.68 0.00 38.64 2.29
591 641 5.336451 GGGAAATTCCACAACCAGAACATAC 60.336 44.000 14.68 0.00 38.64 2.39
592 642 5.371115 AAATTCCACAACCAGAACATACG 57.629 39.130 0.00 0.00 0.00 3.06
593 643 3.755112 TTCCACAACCAGAACATACGA 57.245 42.857 0.00 0.00 0.00 3.43
594 644 3.313012 TCCACAACCAGAACATACGAG 57.687 47.619 0.00 0.00 0.00 4.18
786 837 5.016051 TCTTTTCTAAGCTCGATCTGCAT 57.984 39.130 9.64 1.42 0.00 3.96
862 913 0.400213 TGGAAGGCATCTCAAACCGT 59.600 50.000 0.00 0.00 0.00 4.83
867 918 2.017049 AGGCATCTCAAACCGTATTGC 58.983 47.619 0.00 0.00 0.00 3.56
979 1030 6.035435 GCACATACATCAAAGATATAGAGGCG 59.965 42.308 0.00 0.00 0.00 5.52
1026 1079 0.887933 TCCGGCTGCCAATTTTTCTC 59.112 50.000 20.29 0.00 0.00 2.87
1070 1123 6.364165 AGCAATTCATCTGTGTTCATTTTTCG 59.636 34.615 0.00 0.00 0.00 3.46
1110 1163 6.539173 TCTTAGCCCACTTTTGATTCACTTA 58.461 36.000 0.00 0.00 0.00 2.24
1145 1198 8.855110 TGTTATCATTGATGTACTTGGTTTTGT 58.145 29.630 9.46 0.00 0.00 2.83
1182 1235 3.010138 TGAAGCCAAGCAACCCTAACTAT 59.990 43.478 0.00 0.00 0.00 2.12
1200 1253 3.995705 ACTATAGTCCTCGCTATGTCGAC 59.004 47.826 9.11 9.11 34.00 4.20
1251 1304 6.156256 TCACAGTTACAGGATTAGCTACCATT 59.844 38.462 0.00 0.00 0.00 3.16
1285 1338 6.978080 GGATCTTTCTAGCTCTCAAGTAGTTG 59.022 42.308 3.73 3.73 34.67 3.16
1347 1400 1.035139 CCCTGCTTGGCCATATTCAC 58.965 55.000 6.09 0.00 0.00 3.18
1374 1427 3.243941 TGAGCAAGCAAAACAAGCATGAT 60.244 39.130 0.00 0.00 32.86 2.45
1463 1516 5.221224 CGGCAACACCATCAATTAATACCAT 60.221 40.000 0.00 0.00 39.03 3.55
1484 1537 1.063183 AGCCTCAAGAAGAGTTGCCT 58.937 50.000 0.00 0.00 43.12 4.75
1487 1540 2.697654 CCTCAAGAAGAGTTGCCTCAG 58.302 52.381 0.00 0.00 43.12 3.35
1497 1550 3.900601 AGAGTTGCCTCAGATACATAGGG 59.099 47.826 0.00 0.00 40.40 3.53
1523 1576 1.672881 GCTGTTGGCATACATGGTCTC 59.327 52.381 0.00 0.00 41.35 3.36
1656 1709 5.059833 GTCACTGTCTCTTCTTTCACCAAT 58.940 41.667 0.00 0.00 0.00 3.16
1671 1724 0.259647 CCAATGGAGGGCTGATTCCA 59.740 55.000 0.00 0.00 46.79 3.53
1856 1917 4.852134 TCATGATGAACAACACAAAGGG 57.148 40.909 0.00 0.00 0.00 3.95
1857 1918 4.214310 TCATGATGAACAACACAAAGGGT 58.786 39.130 0.00 0.00 0.00 4.34
1883 1944 1.604604 TTCAACCACTTGCTGCCTAC 58.395 50.000 0.00 0.00 0.00 3.18
1902 1963 1.834263 ACCCAGCAGACAGTATTCCTC 59.166 52.381 0.00 0.00 0.00 3.71
1903 1964 1.833630 CCCAGCAGACAGTATTCCTCA 59.166 52.381 0.00 0.00 0.00 3.86
1963 2025 1.134128 TCTTGTGCTGCTTGAACTGGA 60.134 47.619 0.00 0.00 0.00 3.86
1968 2030 1.536766 TGCTGCTTGAACTGGAATTCG 59.463 47.619 0.00 0.00 0.00 3.34
2061 2126 2.038295 GGCAGGAGAGAATTCCATCGAT 59.962 50.000 0.65 0.00 39.84 3.59
2107 2172 5.696724 GCTTTAGTACTATTCATCGCCATGT 59.303 40.000 2.79 0.00 0.00 3.21
2108 2173 6.346919 GCTTTAGTACTATTCATCGCCATGTG 60.347 42.308 2.79 0.00 0.00 3.21
2114 2181 1.378531 TTCATCGCCATGTGGTAAGC 58.621 50.000 0.35 0.00 37.57 3.09
2120 2187 1.221840 CCATGTGGTAAGCTCCGCT 59.778 57.895 6.57 0.00 42.56 5.52
2132 2200 1.063867 AGCTCCGCTCCCTCTAAGTTA 60.064 52.381 0.00 0.00 30.62 2.24
2234 2442 1.068434 TCTCACTGCATGAACGTGACA 59.932 47.619 0.00 0.00 36.69 3.58
2708 2924 0.040351 ACAGGCAGAGGAGCTAGTCA 59.960 55.000 0.00 0.00 34.17 3.41
2746 2962 2.493278 CAGATTGTCCGGCCATTTTTCT 59.507 45.455 2.24 0.00 0.00 2.52
2747 2963 2.755103 AGATTGTCCGGCCATTTTTCTC 59.245 45.455 2.24 0.00 0.00 2.87
2748 2964 2.286365 TTGTCCGGCCATTTTTCTCT 57.714 45.000 2.24 0.00 0.00 3.10
2749 2965 1.821216 TGTCCGGCCATTTTTCTCTC 58.179 50.000 2.24 0.00 0.00 3.20
2750 2966 0.727398 GTCCGGCCATTTTTCTCTCG 59.273 55.000 2.24 0.00 0.00 4.04
2752 2968 0.447801 CCGGCCATTTTTCTCTCGTG 59.552 55.000 2.24 0.00 0.00 4.35
2848 3068 5.158494 TGCTTCTGTACTGTACACAATACG 58.842 41.667 16.26 6.45 31.80 3.06
2864 3084 4.691685 ACAATACGAAAGCCACAAATACGA 59.308 37.500 0.00 0.00 0.00 3.43
2971 3198 2.028337 GGAGCTCTCGATTCGCCC 59.972 66.667 14.64 0.00 0.00 6.13
2997 3224 4.899239 GGACATGCTCCGAGCCCG 62.899 72.222 17.81 10.82 41.51 6.13
3019 3246 4.379243 AACGGCTCGAGGTGGCTG 62.379 66.667 15.58 8.16 40.32 4.85
3141 3373 3.687321 CTGGTGTGCCGGATCAGGG 62.687 68.421 14.13 5.85 43.97 4.45
3286 3529 5.168526 TGTTGGACGAAATCACAGAAAAG 57.831 39.130 0.00 0.00 0.00 2.27
3306 3549 2.886324 CGAAGCGCGTTCTATGTAAG 57.114 50.000 8.43 0.00 32.33 2.34
3307 3550 1.072089 CGAAGCGCGTTCTATGTAAGC 60.072 52.381 8.43 0.00 32.33 3.09
3308 3551 1.924524 GAAGCGCGTTCTATGTAAGCA 59.075 47.619 8.43 0.00 31.73 3.91
3309 3552 2.004583 AGCGCGTTCTATGTAAGCAA 57.995 45.000 8.43 0.00 0.00 3.91
3310 3553 2.343101 AGCGCGTTCTATGTAAGCAAA 58.657 42.857 8.43 0.00 0.00 3.68
3311 3554 2.936498 AGCGCGTTCTATGTAAGCAAAT 59.064 40.909 8.43 0.00 0.00 2.32
3413 3660 0.900182 CTCCAACCCTTTCTTGCCCC 60.900 60.000 0.00 0.00 0.00 5.80
3418 3665 2.044946 CCTTTCTTGCCCCCTCCG 60.045 66.667 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 119 4.154918 GCTTCAAGGGAAATGTACAGACAG 59.845 45.833 0.33 0.00 39.50 3.51
348 349 9.238368 CCTGGAAGTTATGGTCAACTTATTTTA 57.762 33.333 1.47 0.00 46.23 1.52
353 354 4.042311 TGCCTGGAAGTTATGGTCAACTTA 59.958 41.667 0.00 0.00 46.23 2.24
359 360 3.381590 GGAATTGCCTGGAAGTTATGGTC 59.618 47.826 0.00 0.00 0.00 4.02
361 362 3.131046 GTGGAATTGCCTGGAAGTTATGG 59.869 47.826 0.00 0.00 37.63 2.74
405 406 2.142356 TGCCAATAATCAGGTGGTGG 57.858 50.000 0.00 0.00 34.71 4.61
431 443 3.572255 TCCCTTGAAGACAATTTTTCCCG 59.428 43.478 0.00 0.00 35.37 5.14
482 494 5.599732 AGTGCAAACAAGAATGTGCATAAA 58.400 33.333 0.00 0.00 39.67 1.40
484 496 4.852134 AGTGCAAACAAGAATGTGCATA 57.148 36.364 0.00 0.00 39.67 3.14
514 526 6.151817 GGATGTAAGAGCACCTCTGAATTTTT 59.848 38.462 0.00 0.00 40.28 1.94
551 600 7.559897 TGGAATTTCCCAGAAGTTATGGTAATC 59.440 37.037 15.24 1.91 35.03 1.75
552 601 7.342026 GTGGAATTTCCCAGAAGTTATGGTAAT 59.658 37.037 15.24 11.02 36.78 1.89
562 612 3.230134 TGGTTGTGGAATTTCCCAGAAG 58.770 45.455 12.90 0.00 39.70 2.85
566 616 2.962421 GTTCTGGTTGTGGAATTTCCCA 59.038 45.455 12.90 7.61 35.03 4.37
567 617 2.962421 TGTTCTGGTTGTGGAATTTCCC 59.038 45.455 12.90 5.15 35.03 3.97
579 629 3.402628 AACAGCTCGTATGTTCTGGTT 57.597 42.857 9.71 0.00 36.10 3.67
587 637 2.094182 AGGTGGTGTAACAGCTCGTATG 60.094 50.000 0.00 0.00 45.27 2.39
588 638 2.094182 CAGGTGGTGTAACAGCTCGTAT 60.094 50.000 0.00 0.00 46.52 3.06
589 639 1.271379 CAGGTGGTGTAACAGCTCGTA 59.729 52.381 0.00 0.00 46.52 3.43
590 640 0.033504 CAGGTGGTGTAACAGCTCGT 59.966 55.000 0.00 0.00 46.52 4.18
591 641 0.317160 TCAGGTGGTGTAACAGCTCG 59.683 55.000 0.00 0.00 46.52 5.03
592 642 2.028112 TGATCAGGTGGTGTAACAGCTC 60.028 50.000 0.00 0.00 46.52 4.09
594 644 2.472695 TGATCAGGTGGTGTAACAGC 57.527 50.000 0.00 0.00 39.98 4.40
653 703 5.810074 GGCAAGTGAAAGTGTTGTTTACATT 59.190 36.000 0.00 0.00 39.39 2.71
835 886 7.105588 GGTTTGAGATGCCTTCCATAATTTTT 58.894 34.615 0.00 0.00 33.29 1.94
836 887 6.627953 CGGTTTGAGATGCCTTCCATAATTTT 60.628 38.462 0.00 0.00 33.29 1.82
840 891 3.278574 CGGTTTGAGATGCCTTCCATAA 58.721 45.455 0.00 0.00 33.29 1.90
862 913 2.368439 GACAAGCAGACATGGGCAATA 58.632 47.619 0.00 0.00 0.00 1.90
867 918 0.037303 AGTGGACAAGCAGACATGGG 59.963 55.000 0.00 0.00 0.00 4.00
979 1030 4.342862 TTGGAGTTAGATAGATGGCAGC 57.657 45.455 0.00 0.00 0.00 5.25
1016 1069 4.446719 GCCTTGCAGAACTGAGAAAAATTG 59.553 41.667 5.97 0.00 0.00 2.32
1017 1070 4.099881 TGCCTTGCAGAACTGAGAAAAATT 59.900 37.500 5.97 0.00 33.32 1.82
1019 1072 3.023119 TGCCTTGCAGAACTGAGAAAAA 58.977 40.909 5.97 0.00 33.32 1.94
1026 1079 1.199327 CTGACATGCCTTGCAGAACTG 59.801 52.381 0.00 0.00 43.65 3.16
1070 1123 4.440663 GGCTAAGATGGAAAGCAATGAACC 60.441 45.833 0.00 0.00 38.01 3.62
1182 1235 2.320745 TGTCGACATAGCGAGGACTA 57.679 50.000 15.76 0.00 41.49 2.59
1200 1253 6.554419 TGCAGATGTCGAAAGGAAAAATATG 58.446 36.000 0.00 0.00 0.00 1.78
1251 1304 7.345653 TGAGAGCTAGAAAGATCCTCCATTTTA 59.654 37.037 0.00 0.00 39.02 1.52
1271 1324 5.184287 AGAGTTAGGACAACTACTTGAGAGC 59.816 44.000 0.00 0.00 0.00 4.09
1285 1338 7.820044 CTAACAACATCAAGAGAGTTAGGAC 57.180 40.000 0.00 0.00 36.45 3.85
1347 1400 2.473530 TGTTTTGCTTGCTCAACTCG 57.526 45.000 8.25 0.00 0.00 4.18
1374 1427 7.162761 CCGATCTAACTCTACTATCTTCAGGA 58.837 42.308 0.00 0.00 0.00 3.86
1463 1516 3.059352 GGCAACTCTTCTTGAGGCTAA 57.941 47.619 0.00 0.00 46.72 3.09
1484 1537 4.225042 ACAGCACAAACCCTATGTATCTGA 59.775 41.667 12.13 0.00 35.70 3.27
1487 1540 4.096382 CCAACAGCACAAACCCTATGTATC 59.904 45.833 0.00 0.00 0.00 2.24
1523 1576 7.436673 CCAATAGAGAACCTACAAGAAGAATCG 59.563 40.741 0.00 0.00 0.00 3.34
1656 1709 1.198094 TCGTTGGAATCAGCCCTCCA 61.198 55.000 0.00 0.00 40.03 3.86
1671 1724 2.094659 CGCCATGCTCTCGTTCGTT 61.095 57.895 0.00 0.00 0.00 3.85
1764 1817 3.474600 CCATATCACCAGCCTCAGAAAG 58.525 50.000 0.00 0.00 0.00 2.62
1883 1944 1.833630 TGAGGAATACTGTCTGCTGGG 59.166 52.381 0.00 0.00 0.00 4.45
1995 2057 1.742761 ATGCGTTGGTGATCTTCTGG 58.257 50.000 0.00 0.00 0.00 3.86
2061 2126 3.760035 GGAGCGACGAGGGAGCAA 61.760 66.667 0.00 0.00 0.00 3.91
2089 2154 3.728845 ACCACATGGCGATGAATAGTAC 58.271 45.455 16.26 0.00 39.32 2.73
2114 2181 3.385111 ACAATAACTTAGAGGGAGCGGAG 59.615 47.826 0.00 0.00 0.00 4.63
2120 2187 4.324254 CCTGCCAACAATAACTTAGAGGGA 60.324 45.833 0.00 0.00 0.00 4.20
2132 2200 1.474855 GGTTGTTTGCCTGCCAACAAT 60.475 47.619 20.09 0.00 40.10 2.71
2234 2442 1.067295 TGTTCTGTGATGCCCCTCTT 58.933 50.000 0.00 0.00 0.00 2.85
2525 2741 2.885135 TGGACAGTCCTACGTTCCTA 57.115 50.000 20.82 0.00 37.46 2.94
2585 2801 1.376424 CATGTCCTGGCAGACGCTT 60.376 57.895 17.94 1.01 39.77 4.68
2635 2851 0.476771 GACAAGAACCACCTTCCCCA 59.523 55.000 0.00 0.00 0.00 4.96
2708 2924 1.004320 TGATGGCGTTGGCGTAACT 60.004 52.632 3.80 0.00 41.24 2.24
2746 2962 1.066858 GGATTGAAGAGCACCACGAGA 60.067 52.381 0.00 0.00 0.00 4.04
2747 2963 1.066573 AGGATTGAAGAGCACCACGAG 60.067 52.381 0.00 0.00 0.00 4.18
2748 2964 0.976641 AGGATTGAAGAGCACCACGA 59.023 50.000 0.00 0.00 0.00 4.35
2749 2965 1.081892 CAGGATTGAAGAGCACCACG 58.918 55.000 0.00 0.00 0.00 4.94
2750 2966 1.271597 ACCAGGATTGAAGAGCACCAC 60.272 52.381 0.00 0.00 0.00 4.16
2752 2968 1.271597 ACACCAGGATTGAAGAGCACC 60.272 52.381 0.00 0.00 0.00 5.01
2848 3068 1.790481 GCGCTCGTATTTGTGGCTTTC 60.790 52.381 0.00 0.00 0.00 2.62
2864 3084 2.347490 CACCACCCTGTAAGCGCT 59.653 61.111 2.64 2.64 0.00 5.92
3141 3373 3.195698 GGAGTCAACGCCGATGGC 61.196 66.667 0.00 0.00 46.75 4.40
3213 3453 7.939782 ACTCAAAGCCCAAATTAAAATTTTGG 58.060 30.769 13.76 10.80 41.60 3.28
3215 3455 9.800433 CAAACTCAAAGCCCAAATTAAAATTTT 57.200 25.926 8.75 8.75 36.52 1.82
3217 3457 7.777440 TCCAAACTCAAAGCCCAAATTAAAATT 59.223 29.630 0.00 0.00 0.00 1.82
3299 3542 3.181501 GCGCTGTTGGATTTGCTTACATA 60.182 43.478 0.00 0.00 0.00 2.29
3300 3543 2.415893 GCGCTGTTGGATTTGCTTACAT 60.416 45.455 0.00 0.00 0.00 2.29
3301 3544 1.068610 GCGCTGTTGGATTTGCTTACA 60.069 47.619 0.00 0.00 0.00 2.41
3302 3545 1.617740 GCGCTGTTGGATTTGCTTAC 58.382 50.000 0.00 0.00 0.00 2.34
3303 3546 0.167908 CGCGCTGTTGGATTTGCTTA 59.832 50.000 5.56 0.00 0.00 3.09
3304 3547 1.081242 CGCGCTGTTGGATTTGCTT 60.081 52.632 5.56 0.00 0.00 3.91
3305 3548 2.187599 GACGCGCTGTTGGATTTGCT 62.188 55.000 5.73 0.00 0.00 3.91
3306 3549 1.797537 GACGCGCTGTTGGATTTGC 60.798 57.895 5.73 0.00 0.00 3.68
3307 3550 0.179215 GAGACGCGCTGTTGGATTTG 60.179 55.000 5.73 0.00 0.00 2.32
3308 3551 0.602638 TGAGACGCGCTGTTGGATTT 60.603 50.000 5.73 0.00 0.00 2.17
3309 3552 1.005037 TGAGACGCGCTGTTGGATT 60.005 52.632 5.73 0.00 0.00 3.01
3310 3553 1.446792 CTGAGACGCGCTGTTGGAT 60.447 57.895 5.73 0.00 0.00 3.41
3311 3554 2.049156 CTGAGACGCGCTGTTGGA 60.049 61.111 5.73 0.00 0.00 3.53
3352 3595 3.318557 GGAGTAAACCGGATTCTCTCGAT 59.681 47.826 9.46 0.00 0.00 3.59
3353 3596 2.686915 GGAGTAAACCGGATTCTCTCGA 59.313 50.000 9.46 0.00 0.00 4.04
3355 3598 4.739587 AAGGAGTAAACCGGATTCTCTC 57.260 45.455 9.46 14.04 34.73 3.20
3356 3599 4.833390 CAAAGGAGTAAACCGGATTCTCT 58.167 43.478 9.46 5.01 34.73 3.10
3394 3641 0.900182 GGGGCAAGAAAGGGTTGGAG 60.900 60.000 0.00 0.00 0.00 3.86
3418 3665 3.153270 GATCGGAGGTCGGGAAGCC 62.153 68.421 0.00 0.00 39.77 4.35
3500 3747 1.428219 GGATCAGACGAACGCGAGA 59.572 57.895 15.93 0.00 41.64 4.04
3507 3754 0.888619 AGAGCAACGGATCAGACGAA 59.111 50.000 0.00 0.00 34.93 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.