Multiple sequence alignment - TraesCS7B01G318400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G318400 chr7B 100.000 4014 0 0 1 4014 568487191 568491204 0.000000e+00 7413
1 TraesCS7B01G318400 chr7B 91.293 2297 164 25 832 3108 568645610 568647890 0.000000e+00 3101
2 TraesCS7B01G318400 chr7A 92.644 3344 196 22 706 4014 609548490 609551818 0.000000e+00 4767
3 TraesCS7B01G318400 chr7A 90.108 2315 196 21 814 3108 610433524 610435825 0.000000e+00 2976
4 TraesCS7B01G318400 chr7A 86.364 220 21 6 1041 1259 610432356 610432567 8.680000e-57 231
5 TraesCS7B01G318400 chr7A 88.462 182 19 2 259 439 609547747 609547927 6.750000e-53 219
6 TraesCS7B01G318400 chr7A 93.478 92 5 1 437 527 609548401 609548492 7.000000e-28 135
7 TraesCS7B01G318400 chr7D 89.366 2238 202 21 885 3108 530103031 530105246 0.000000e+00 2782
8 TraesCS7B01G318400 chr7D 91.509 212 8 4 706 917 530024719 530024920 2.360000e-72 283
9 TraesCS7B01G318400 chr7D 87.978 183 20 2 259 439 530023988 530024170 8.740000e-52 215
10 TraesCS7B01G318400 chr7D 95.789 95 3 1 437 530 530102868 530102962 6.950000e-33 152
11 TraesCS7B01G318400 chr7D 93.478 92 5 1 437 527 530024630 530024721 7.000000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G318400 chr7B 568487191 568491204 4013 False 7413.0 7413 100.000000 1 4014 1 chr7B.!!$F1 4013
1 TraesCS7B01G318400 chr7B 568645610 568647890 2280 False 3101.0 3101 91.293000 832 3108 1 chr7B.!!$F2 2276
2 TraesCS7B01G318400 chr7A 609547747 609551818 4071 False 1707.0 4767 91.528000 259 4014 3 chr7A.!!$F1 3755
3 TraesCS7B01G318400 chr7A 610432356 610435825 3469 False 1603.5 2976 88.236000 814 3108 2 chr7A.!!$F2 2294
4 TraesCS7B01G318400 chr7D 530102868 530105246 2378 False 1467.0 2782 92.577500 437 3108 2 chr7D.!!$F2 2671
5 TraesCS7B01G318400 chr7D 530023988 530024920 932 False 211.0 283 90.988333 259 917 3 chr7D.!!$F1 658

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
739 1220 0.035152 CACCTCATGTGGCCTGCTAA 60.035 55.0 13.75 0.0 41.52 3.09 F
743 1224 0.035152 TCATGTGGCCTGCTAACCAG 60.035 55.0 3.32 0.0 41.41 4.00 F
1958 2751 0.107848 AATAACCCCGAGGAAGTGCG 60.108 55.0 0.00 0.0 36.73 5.34 F
2487 3301 1.307355 TGATGGTTGCCTGCATCACG 61.307 55.0 0.00 0.0 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2650 3472 0.027586 GCCGCAACTGCTATTTACCG 59.972 55.000 0.00 0.00 39.32 4.02 R
2667 3489 1.409427 ACTTCACTCTACCGCTATGCC 59.591 52.381 0.00 0.00 0.00 4.40 R
2981 3823 0.322187 GATTTACCCGTGGCCAGTGT 60.322 55.000 5.11 6.29 0.00 3.55 R
3741 4592 1.696336 AGAGAAGGCTCAGCAAACTCA 59.304 47.619 15.22 0.00 43.81 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 8.539770 TTTTTCTTTACAAAGCATGTCAAACA 57.460 26.923 0.00 0.00 42.70 2.83
77 78 7.754069 TTTCTTTACAAAGCATGTCAAACAG 57.246 32.000 0.00 0.00 42.70 3.16
79 80 7.561021 TCTTTACAAAGCATGTCAAACAGTA 57.439 32.000 0.00 0.00 42.70 2.74
80 81 7.414436 TCTTTACAAAGCATGTCAAACAGTAC 58.586 34.615 0.00 0.00 42.70 2.73
82 83 4.920376 ACAAAGCATGTCAAACAGTACAC 58.080 39.130 0.00 0.00 37.96 2.90
83 84 4.640201 ACAAAGCATGTCAAACAGTACACT 59.360 37.500 0.00 0.00 37.96 3.55
84 85 5.207768 CAAAGCATGTCAAACAGTACACTC 58.792 41.667 0.00 0.00 0.00 3.51
85 86 3.403038 AGCATGTCAAACAGTACACTCC 58.597 45.455 0.00 0.00 0.00 3.85
86 87 2.484264 GCATGTCAAACAGTACACTCCC 59.516 50.000 0.00 0.00 0.00 4.30
88 89 3.746045 TGTCAAACAGTACACTCCCTC 57.254 47.619 0.00 0.00 0.00 4.30
89 90 2.035449 TGTCAAACAGTACACTCCCTCG 59.965 50.000 0.00 0.00 0.00 4.63
90 91 2.035576 GTCAAACAGTACACTCCCTCGT 59.964 50.000 0.00 0.00 0.00 4.18
93 94 1.254954 ACAGTACACTCCCTCGTTCC 58.745 55.000 0.00 0.00 0.00 3.62
94 95 0.531200 CAGTACACTCCCTCGTTCCC 59.469 60.000 0.00 0.00 0.00 3.97
95 96 0.964358 AGTACACTCCCTCGTTCCCG 60.964 60.000 0.00 0.00 0.00 5.14
97 98 3.691342 CACTCCCTCGTTCCCGCA 61.691 66.667 0.00 0.00 0.00 5.69
99 100 4.821589 CTCCCTCGTTCCCGCAGC 62.822 72.222 0.00 0.00 0.00 5.25
102 103 4.680237 CCTCGTTCCCGCAGCACA 62.680 66.667 0.00 0.00 0.00 4.57
105 106 2.741985 CGTTCCCGCAGCACATCA 60.742 61.111 0.00 0.00 0.00 3.07
106 107 2.870372 GTTCCCGCAGCACATCAC 59.130 61.111 0.00 0.00 0.00 3.06
107 108 2.359850 TTCCCGCAGCACATCACC 60.360 61.111 0.00 0.00 0.00 4.02
108 109 3.918253 TTCCCGCAGCACATCACCC 62.918 63.158 0.00 0.00 0.00 4.61
112 113 2.562912 GCAGCACATCACCCGTTG 59.437 61.111 0.00 0.00 0.00 4.10
113 114 1.965930 GCAGCACATCACCCGTTGA 60.966 57.895 0.00 0.00 39.11 3.18
114 115 1.514678 GCAGCACATCACCCGTTGAA 61.515 55.000 0.00 0.00 37.92 2.69
115 116 0.950836 CAGCACATCACCCGTTGAAA 59.049 50.000 0.00 0.00 37.92 2.69
119 120 2.228822 GCACATCACCCGTTGAAATCTT 59.771 45.455 0.00 0.00 37.92 2.40
120 121 3.305335 GCACATCACCCGTTGAAATCTTT 60.305 43.478 0.00 0.00 37.92 2.52
121 122 4.475944 CACATCACCCGTTGAAATCTTTC 58.524 43.478 0.00 0.00 37.92 2.62
122 123 3.506067 ACATCACCCGTTGAAATCTTTCC 59.494 43.478 0.48 0.00 37.92 3.13
123 124 3.216187 TCACCCGTTGAAATCTTTCCA 57.784 42.857 0.48 0.00 36.36 3.53
124 125 3.761897 TCACCCGTTGAAATCTTTCCAT 58.238 40.909 0.48 0.00 36.36 3.41
125 126 4.148838 TCACCCGTTGAAATCTTTCCATT 58.851 39.130 0.48 0.00 36.36 3.16
126 127 4.217550 TCACCCGTTGAAATCTTTCCATTC 59.782 41.667 0.48 0.00 36.36 2.67
128 129 3.509575 CCCGTTGAAATCTTTCCATTCCA 59.490 43.478 0.48 0.00 36.36 3.53
129 130 4.160252 CCCGTTGAAATCTTTCCATTCCAT 59.840 41.667 0.48 0.00 36.36 3.41
131 132 5.577945 CCGTTGAAATCTTTCCATTCCATTG 59.422 40.000 0.48 0.00 36.36 2.82
132 133 6.389091 CGTTGAAATCTTTCCATTCCATTGA 58.611 36.000 0.48 0.00 36.36 2.57
133 134 6.867816 CGTTGAAATCTTTCCATTCCATTGAA 59.132 34.615 0.48 0.00 36.36 2.69
135 136 9.054922 GTTGAAATCTTTCCATTCCATTGAAAA 57.945 29.630 0.48 0.00 36.36 2.29
136 137 9.624373 TTGAAATCTTTCCATTCCATTGAAAAA 57.376 25.926 0.48 0.00 36.36 1.94
157 158 6.531503 AAAATGCACTACTCTAGCTACAGA 57.468 37.500 2.70 0.00 0.00 3.41
159 160 3.546724 TGCACTACTCTAGCTACAGAGG 58.453 50.000 16.20 3.96 45.36 3.69
160 161 3.200165 TGCACTACTCTAGCTACAGAGGA 59.800 47.826 16.20 8.16 45.36 3.71
161 162 4.200874 GCACTACTCTAGCTACAGAGGAA 58.799 47.826 16.20 4.99 45.36 3.36
164 165 6.116806 CACTACTCTAGCTACAGAGGAAAGA 58.883 44.000 16.20 0.00 45.36 2.52
166 167 4.924625 ACTCTAGCTACAGAGGAAAGACA 58.075 43.478 16.20 0.00 45.36 3.41
167 168 4.703093 ACTCTAGCTACAGAGGAAAGACAC 59.297 45.833 16.20 0.00 45.36 3.67
168 169 4.663334 TCTAGCTACAGAGGAAAGACACA 58.337 43.478 0.00 0.00 0.00 3.72
172 173 4.040952 AGCTACAGAGGAAAGACACATTGT 59.959 41.667 0.00 0.00 0.00 2.71
174 175 5.106908 GCTACAGAGGAAAGACACATTGTTC 60.107 44.000 0.00 0.00 0.00 3.18
175 176 3.809832 ACAGAGGAAAGACACATTGTTCG 59.190 43.478 0.00 0.00 0.00 3.95
176 177 3.809832 CAGAGGAAAGACACATTGTTCGT 59.190 43.478 0.00 0.00 0.00 3.85
177 178 4.988540 CAGAGGAAAGACACATTGTTCGTA 59.011 41.667 0.00 0.00 0.00 3.43
179 180 4.699637 AGGAAAGACACATTGTTCGTACA 58.300 39.130 0.00 0.00 0.00 2.90
181 182 4.084013 GGAAAGACACATTGTTCGTACAGG 60.084 45.833 0.00 0.00 35.28 4.00
183 184 3.650139 AGACACATTGTTCGTACAGGAC 58.350 45.455 0.00 0.00 35.28 3.85
198 199 2.233305 AGGACGATGTAACCTGACCT 57.767 50.000 0.00 0.00 32.39 3.85
200 201 2.496470 AGGACGATGTAACCTGACCTTC 59.504 50.000 0.00 0.00 32.39 3.46
202 203 2.496470 GACGATGTAACCTGACCTTCCT 59.504 50.000 0.00 0.00 0.00 3.36
204 205 2.496070 CGATGTAACCTGACCTTCCTGA 59.504 50.000 0.00 0.00 0.00 3.86
205 206 3.056107 CGATGTAACCTGACCTTCCTGAA 60.056 47.826 0.00 0.00 0.00 3.02
206 207 4.383118 CGATGTAACCTGACCTTCCTGAAT 60.383 45.833 0.00 0.00 0.00 2.57
207 208 4.286297 TGTAACCTGACCTTCCTGAATG 57.714 45.455 0.00 0.00 0.00 2.67
208 209 3.650942 TGTAACCTGACCTTCCTGAATGT 59.349 43.478 0.00 0.00 0.00 2.71
210 211 1.276421 ACCTGACCTTCCTGAATGTCG 59.724 52.381 9.67 5.87 38.32 4.35
211 212 1.363744 CTGACCTTCCTGAATGTCGC 58.636 55.000 9.67 0.00 38.32 5.19
213 214 2.166459 CTGACCTTCCTGAATGTCGCTA 59.834 50.000 9.67 0.00 38.32 4.26
215 216 3.126831 GACCTTCCTGAATGTCGCTATG 58.873 50.000 0.58 0.00 0.00 2.23
218 219 3.557595 CCTTCCTGAATGTCGCTATGAAC 59.442 47.826 0.00 0.00 0.00 3.18
219 220 3.885724 TCCTGAATGTCGCTATGAACA 57.114 42.857 0.00 0.00 0.00 3.18
220 221 4.200838 TCCTGAATGTCGCTATGAACAA 57.799 40.909 0.00 0.00 0.00 2.83
221 222 3.932710 TCCTGAATGTCGCTATGAACAAC 59.067 43.478 0.00 0.00 0.00 3.32
223 224 4.201753 CCTGAATGTCGCTATGAACAACAG 60.202 45.833 0.00 0.00 0.00 3.16
225 226 2.162319 TGTCGCTATGAACAACAGCA 57.838 45.000 10.67 0.00 0.00 4.41
226 227 2.488952 TGTCGCTATGAACAACAGCAA 58.511 42.857 10.67 0.00 0.00 3.91
227 228 2.480037 TGTCGCTATGAACAACAGCAAG 59.520 45.455 10.67 0.00 0.00 4.01
229 230 1.197492 CGCTATGAACAACAGCAAGCA 59.803 47.619 10.67 0.00 34.51 3.91
230 231 2.726989 CGCTATGAACAACAGCAAGCAG 60.727 50.000 10.67 0.00 34.51 4.24
231 232 2.860062 CTATGAACAACAGCAAGCAGC 58.140 47.619 0.00 0.00 46.19 5.25
241 242 2.112898 GCAAGCAGCAGCATATGGT 58.887 52.632 3.17 0.40 45.49 3.55
242 243 0.458669 GCAAGCAGCAGCATATGGTT 59.541 50.000 4.25 0.00 45.49 3.67
243 244 2.203800 CAAGCAGCAGCATATGGTTG 57.796 50.000 4.25 9.80 45.19 3.77
245 246 1.676746 AGCAGCAGCATATGGTTGAG 58.323 50.000 4.25 0.00 45.49 3.02
246 247 0.666913 GCAGCAGCATATGGTTGAGG 59.333 55.000 4.25 0.00 37.60 3.86
248 249 1.945394 CAGCAGCATATGGTTGAGGAC 59.055 52.381 4.25 0.00 37.60 3.85
249 250 1.842562 AGCAGCATATGGTTGAGGACT 59.157 47.619 4.25 0.00 35.67 3.85
250 251 1.945394 GCAGCATATGGTTGAGGACTG 59.055 52.381 4.25 1.70 0.00 3.51
251 252 2.569059 CAGCATATGGTTGAGGACTGG 58.431 52.381 4.25 0.00 0.00 4.00
252 253 2.092753 CAGCATATGGTTGAGGACTGGT 60.093 50.000 4.25 0.00 0.00 4.00
253 254 3.134623 CAGCATATGGTTGAGGACTGGTA 59.865 47.826 4.25 0.00 0.00 3.25
254 255 3.976654 AGCATATGGTTGAGGACTGGTAT 59.023 43.478 0.40 0.00 0.00 2.73
255 256 5.012046 CAGCATATGGTTGAGGACTGGTATA 59.988 44.000 4.25 0.00 0.00 1.47
257 258 5.934625 GCATATGGTTGAGGACTGGTATAAG 59.065 44.000 4.56 0.00 0.00 1.73
296 298 1.000274 GTGCAACCTTCCATCCACAAC 60.000 52.381 0.00 0.00 0.00 3.32
312 314 1.020861 CAACTGCACGCATCAGCCTA 61.021 55.000 0.00 0.00 37.52 3.93
327 330 4.234550 TCAGCCTATACATGAATCACCCT 58.765 43.478 0.00 0.00 0.00 4.34
330 333 5.934625 CAGCCTATACATGAATCACCCTTAC 59.065 44.000 0.00 0.00 0.00 2.34
358 361 4.111255 TGAAGGATGGTCACAAATCCAA 57.889 40.909 10.57 0.00 44.17 3.53
363 366 3.119849 GGATGGTCACAAATCCAACTTCG 60.120 47.826 4.24 0.00 41.78 3.79
369 372 3.563808 TCACAAATCCAACTTCGGAACAG 59.436 43.478 0.00 0.00 38.95 3.16
384 387 3.861569 GAACAGTTTCCTGACGACAAG 57.138 47.619 0.00 0.00 41.50 3.16
393 396 2.006888 CCTGACGACAAGTGTGTTTGT 58.993 47.619 0.00 0.00 43.61 2.83
429 432 0.319297 CCAGCCAAGCAAGCAGAAAC 60.319 55.000 0.00 0.00 0.00 2.78
435 438 3.313249 GCCAAGCAAGCAGAAACAAAAAT 59.687 39.130 0.00 0.00 0.00 1.82
495 976 3.617263 GGATATTGCTCTTCGTCAACGTT 59.383 43.478 0.00 0.00 40.80 3.99
519 1000 7.536895 TCAATAAACATTGGTGCATTATTGC 57.463 32.000 16.52 2.60 41.84 3.56
534 1015 7.856492 GCATTATTGCGATTATTGTGAATGA 57.144 32.000 7.30 0.00 39.49 2.57
535 1016 8.284557 GCATTATTGCGATTATTGTGAATGAA 57.715 30.769 7.30 0.00 39.49 2.57
536 1017 8.422457 GCATTATTGCGATTATTGTGAATGAAG 58.578 33.333 7.30 0.00 39.49 3.02
537 1018 8.908678 CATTATTGCGATTATTGTGAATGAAGG 58.091 33.333 0.00 0.00 0.00 3.46
538 1019 4.291540 TGCGATTATTGTGAATGAAGGC 57.708 40.909 0.00 0.00 0.00 4.35
539 1020 3.693578 TGCGATTATTGTGAATGAAGGCA 59.306 39.130 0.00 0.00 0.00 4.75
540 1021 4.037690 GCGATTATTGTGAATGAAGGCAC 58.962 43.478 0.00 0.00 35.63 5.01
541 1022 4.274069 CGATTATTGTGAATGAAGGCACG 58.726 43.478 0.00 0.00 37.83 5.34
542 1023 3.485947 TTATTGTGAATGAAGGCACGC 57.514 42.857 0.00 0.00 37.83 5.34
543 1024 1.246649 ATTGTGAATGAAGGCACGCA 58.753 45.000 0.00 0.00 37.83 5.24
544 1025 1.246649 TTGTGAATGAAGGCACGCAT 58.753 45.000 0.00 0.00 37.83 4.73
545 1026 2.106477 TGTGAATGAAGGCACGCATA 57.894 45.000 0.00 0.00 37.83 3.14
546 1027 2.642427 TGTGAATGAAGGCACGCATAT 58.358 42.857 0.00 0.00 37.83 1.78
547 1028 3.016031 TGTGAATGAAGGCACGCATATT 58.984 40.909 0.00 0.00 37.83 1.28
548 1029 3.065233 TGTGAATGAAGGCACGCATATTC 59.935 43.478 0.00 0.00 37.83 1.75
549 1030 3.065233 GTGAATGAAGGCACGCATATTCA 59.935 43.478 6.17 6.17 36.22 2.57
550 1031 3.693578 TGAATGAAGGCACGCATATTCAA 59.306 39.130 7.38 0.00 35.47 2.69
551 1032 3.976793 ATGAAGGCACGCATATTCAAG 57.023 42.857 7.38 0.00 35.47 3.02
552 1033 2.710377 TGAAGGCACGCATATTCAAGT 58.290 42.857 0.00 0.00 0.00 3.16
553 1034 2.419673 TGAAGGCACGCATATTCAAGTG 59.580 45.455 0.00 0.00 37.63 3.16
554 1035 2.113860 AGGCACGCATATTCAAGTGT 57.886 45.000 0.00 0.00 36.99 3.55
555 1036 3.260475 AGGCACGCATATTCAAGTGTA 57.740 42.857 0.00 0.00 36.99 2.90
556 1037 3.808728 AGGCACGCATATTCAAGTGTAT 58.191 40.909 0.00 0.00 36.99 2.29
557 1038 3.561310 AGGCACGCATATTCAAGTGTATG 59.439 43.478 0.00 0.00 36.99 2.39
558 1039 3.559655 GGCACGCATATTCAAGTGTATGA 59.440 43.478 0.00 0.00 36.99 2.15
559 1040 4.214119 GGCACGCATATTCAAGTGTATGAT 59.786 41.667 0.00 0.00 36.99 2.45
560 1041 5.277974 GGCACGCATATTCAAGTGTATGATT 60.278 40.000 0.00 0.00 36.99 2.57
561 1042 5.622448 GCACGCATATTCAAGTGTATGATTG 59.378 40.000 0.00 0.00 36.99 2.67
562 1043 6.718388 CACGCATATTCAAGTGTATGATTGT 58.282 36.000 0.00 0.00 31.48 2.71
563 1044 6.630045 CACGCATATTCAAGTGTATGATTGTG 59.370 38.462 0.00 0.00 31.48 3.33
564 1045 6.316140 ACGCATATTCAAGTGTATGATTGTGT 59.684 34.615 0.00 0.00 31.48 3.72
565 1046 6.630045 CGCATATTCAAGTGTATGATTGTGTG 59.370 38.462 0.00 0.00 31.16 3.82
566 1047 7.475015 GCATATTCAAGTGTATGATTGTGTGT 58.525 34.615 0.00 0.00 31.48 3.72
567 1048 7.430211 GCATATTCAAGTGTATGATTGTGTGTG 59.570 37.037 0.00 0.00 31.48 3.82
568 1049 8.667463 CATATTCAAGTGTATGATTGTGTGTGA 58.333 33.333 0.00 0.00 31.48 3.58
569 1050 5.922739 TCAAGTGTATGATTGTGTGTGAC 57.077 39.130 0.00 0.00 0.00 3.67
570 1051 5.363939 TCAAGTGTATGATTGTGTGTGACA 58.636 37.500 0.00 0.00 0.00 3.58
579 1060 3.986442 TTGTGTGTGACAATGTGGATG 57.014 42.857 0.00 0.00 39.78 3.51
580 1061 2.228925 TGTGTGTGACAATGTGGATGG 58.771 47.619 0.00 0.00 0.00 3.51
581 1062 2.158696 TGTGTGTGACAATGTGGATGGA 60.159 45.455 0.00 0.00 0.00 3.41
582 1063 2.884012 GTGTGTGACAATGTGGATGGAA 59.116 45.455 0.00 0.00 0.00 3.53
583 1064 3.507233 GTGTGTGACAATGTGGATGGAAT 59.493 43.478 0.00 0.00 0.00 3.01
584 1065 4.022068 GTGTGTGACAATGTGGATGGAATT 60.022 41.667 0.00 0.00 0.00 2.17
585 1066 5.182950 GTGTGTGACAATGTGGATGGAATTA 59.817 40.000 0.00 0.00 0.00 1.40
586 1067 5.951148 TGTGTGACAATGTGGATGGAATTAT 59.049 36.000 0.00 0.00 0.00 1.28
587 1068 6.436847 TGTGTGACAATGTGGATGGAATTATT 59.563 34.615 0.00 0.00 0.00 1.40
588 1069 7.039152 TGTGTGACAATGTGGATGGAATTATTT 60.039 33.333 0.00 0.00 0.00 1.40
589 1070 7.489113 GTGTGACAATGTGGATGGAATTATTTC 59.511 37.037 0.00 0.00 0.00 2.17
590 1071 7.396907 TGTGACAATGTGGATGGAATTATTTCT 59.603 33.333 0.00 0.00 32.16 2.52
591 1072 8.253113 GTGACAATGTGGATGGAATTATTTCTT 58.747 33.333 0.00 0.00 32.16 2.52
592 1073 8.469200 TGACAATGTGGATGGAATTATTTCTTC 58.531 33.333 0.00 0.00 32.16 2.87
593 1074 7.785033 ACAATGTGGATGGAATTATTTCTTCC 58.215 34.615 10.31 10.31 42.15 3.46
594 1075 7.620888 ACAATGTGGATGGAATTATTTCTTCCT 59.379 33.333 16.17 0.00 42.27 3.36
595 1076 7.830099 ATGTGGATGGAATTATTTCTTCCTC 57.170 36.000 16.17 13.61 42.27 3.71
596 1077 6.730447 TGTGGATGGAATTATTTCTTCCTCA 58.270 36.000 16.17 15.50 42.27 3.86
597 1078 6.603201 TGTGGATGGAATTATTTCTTCCTCAC 59.397 38.462 16.17 9.49 42.27 3.51
598 1079 6.830838 GTGGATGGAATTATTTCTTCCTCACT 59.169 38.462 16.17 0.00 42.27 3.41
599 1080 7.012799 GTGGATGGAATTATTTCTTCCTCACTC 59.987 40.741 16.17 2.79 42.27 3.51
600 1081 7.056635 GGATGGAATTATTTCTTCCTCACTCA 58.943 38.462 10.04 0.00 42.27 3.41
601 1082 7.012799 GGATGGAATTATTTCTTCCTCACTCAC 59.987 40.741 10.04 0.00 42.27 3.51
602 1083 6.778821 TGGAATTATTTCTTCCTCACTCACA 58.221 36.000 3.94 0.00 42.27 3.58
603 1084 6.655003 TGGAATTATTTCTTCCTCACTCACAC 59.345 38.462 3.94 0.00 42.27 3.82
604 1085 6.655003 GGAATTATTTCTTCCTCACTCACACA 59.345 38.462 0.00 0.00 39.30 3.72
605 1086 7.337942 GGAATTATTTCTTCCTCACTCACACAT 59.662 37.037 0.00 0.00 39.30 3.21
606 1087 7.621428 ATTATTTCTTCCTCACTCACACATG 57.379 36.000 0.00 0.00 0.00 3.21
607 1088 4.422073 TTTCTTCCTCACTCACACATGT 57.578 40.909 0.00 0.00 0.00 3.21
608 1089 4.422073 TTCTTCCTCACTCACACATGTT 57.578 40.909 0.00 0.00 0.00 2.71
609 1090 3.995199 TCTTCCTCACTCACACATGTTC 58.005 45.455 0.00 0.00 0.00 3.18
610 1091 2.839486 TCCTCACTCACACATGTTCC 57.161 50.000 0.00 0.00 0.00 3.62
611 1092 1.347707 TCCTCACTCACACATGTTCCC 59.652 52.381 0.00 0.00 0.00 3.97
612 1093 1.072173 CCTCACTCACACATGTTCCCA 59.928 52.381 0.00 0.00 0.00 4.37
613 1094 2.146342 CTCACTCACACATGTTCCCAC 58.854 52.381 0.00 0.00 0.00 4.61
614 1095 1.768275 TCACTCACACATGTTCCCACT 59.232 47.619 0.00 0.00 0.00 4.00
615 1096 2.172505 TCACTCACACATGTTCCCACTT 59.827 45.455 0.00 0.00 0.00 3.16
616 1097 2.291465 CACTCACACATGTTCCCACTTG 59.709 50.000 0.00 0.00 34.81 3.16
617 1098 2.172505 ACTCACACATGTTCCCACTTGA 59.827 45.455 0.00 0.00 33.26 3.02
618 1099 3.181440 ACTCACACATGTTCCCACTTGAT 60.181 43.478 0.00 0.00 33.26 2.57
619 1100 4.041567 ACTCACACATGTTCCCACTTGATA 59.958 41.667 0.00 0.00 33.26 2.15
620 1101 4.979335 TCACACATGTTCCCACTTGATAA 58.021 39.130 0.00 0.00 33.26 1.75
621 1102 5.003160 TCACACATGTTCCCACTTGATAAG 58.997 41.667 0.00 0.00 33.26 1.73
622 1103 5.003160 CACACATGTTCCCACTTGATAAGA 58.997 41.667 0.00 0.00 33.26 2.10
623 1104 5.473162 CACACATGTTCCCACTTGATAAGAA 59.527 40.000 0.00 0.00 33.26 2.52
624 1105 6.016360 CACACATGTTCCCACTTGATAAGAAA 60.016 38.462 0.00 0.00 33.26 2.52
625 1106 6.721208 ACACATGTTCCCACTTGATAAGAAAT 59.279 34.615 0.00 0.00 33.26 2.17
626 1107 7.233348 ACACATGTTCCCACTTGATAAGAAATT 59.767 33.333 0.00 0.00 33.26 1.82
627 1108 8.090214 CACATGTTCCCACTTGATAAGAAATTT 58.910 33.333 0.00 0.00 33.26 1.82
628 1109 8.090214 ACATGTTCCCACTTGATAAGAAATTTG 58.910 33.333 0.00 0.00 33.26 2.32
629 1110 7.595819 TGTTCCCACTTGATAAGAAATTTGT 57.404 32.000 0.00 0.00 0.00 2.83
630 1111 7.432869 TGTTCCCACTTGATAAGAAATTTGTG 58.567 34.615 0.00 0.00 0.00 3.33
631 1112 6.024552 TCCCACTTGATAAGAAATTTGTGC 57.975 37.500 0.00 0.00 0.00 4.57
632 1113 5.774690 TCCCACTTGATAAGAAATTTGTGCT 59.225 36.000 0.00 0.00 0.00 4.40
633 1114 5.865552 CCCACTTGATAAGAAATTTGTGCTG 59.134 40.000 0.00 0.00 0.00 4.41
634 1115 5.346822 CCACTTGATAAGAAATTTGTGCTGC 59.653 40.000 0.00 0.00 0.00 5.25
635 1116 5.921976 CACTTGATAAGAAATTTGTGCTGCA 59.078 36.000 0.00 0.00 0.00 4.41
636 1117 6.421501 CACTTGATAAGAAATTTGTGCTGCAA 59.578 34.615 2.77 0.00 34.87 4.08
637 1118 7.117236 CACTTGATAAGAAATTTGTGCTGCAAT 59.883 33.333 2.77 0.00 36.89 3.56
638 1119 7.330208 ACTTGATAAGAAATTTGTGCTGCAATC 59.670 33.333 2.77 0.04 36.89 2.67
639 1120 6.689554 TGATAAGAAATTTGTGCTGCAATCA 58.310 32.000 2.77 2.97 36.89 2.57
640 1121 6.587226 TGATAAGAAATTTGTGCTGCAATCAC 59.413 34.615 2.77 10.80 36.89 3.06
641 1122 4.595762 AGAAATTTGTGCTGCAATCACT 57.404 36.364 2.77 0.00 36.89 3.41
642 1123 4.304110 AGAAATTTGTGCTGCAATCACTG 58.696 39.130 2.77 0.00 36.89 3.66
655 1136 4.542662 CAATCACTGCACCTTATACTGC 57.457 45.455 0.00 0.00 0.00 4.40
656 1137 3.912496 ATCACTGCACCTTATACTGCA 57.088 42.857 0.00 0.00 41.13 4.41
657 1138 3.912496 TCACTGCACCTTATACTGCAT 57.088 42.857 0.00 0.00 42.43 3.96
658 1139 5.551305 ATCACTGCACCTTATACTGCATA 57.449 39.130 0.00 0.00 42.43 3.14
659 1140 4.693283 TCACTGCACCTTATACTGCATAC 58.307 43.478 0.00 0.00 42.43 2.39
660 1141 4.161377 TCACTGCACCTTATACTGCATACA 59.839 41.667 0.00 0.00 42.43 2.29
661 1142 5.059161 CACTGCACCTTATACTGCATACAT 58.941 41.667 0.00 0.00 42.43 2.29
662 1143 5.528690 CACTGCACCTTATACTGCATACATT 59.471 40.000 0.00 0.00 42.43 2.71
663 1144 6.038603 CACTGCACCTTATACTGCATACATTT 59.961 38.462 0.00 0.00 42.43 2.32
664 1145 7.226523 CACTGCACCTTATACTGCATACATTTA 59.773 37.037 0.00 0.00 42.43 1.40
665 1146 7.939039 ACTGCACCTTATACTGCATACATTTAT 59.061 33.333 0.00 0.00 42.43 1.40
666 1147 9.435688 CTGCACCTTATACTGCATACATTTATA 57.564 33.333 0.00 0.00 42.43 0.98
667 1148 9.958180 TGCACCTTATACTGCATACATTTATAT 57.042 29.630 0.00 0.00 38.49 0.86
675 1156 6.841601 ACTGCATACATTTATATCACCCTGT 58.158 36.000 0.00 0.00 0.00 4.00
676 1157 6.712095 ACTGCATACATTTATATCACCCTGTG 59.288 38.462 0.00 0.00 34.45 3.66
677 1158 5.473162 TGCATACATTTATATCACCCTGTGC 59.527 40.000 0.00 0.00 32.98 4.57
678 1159 5.106157 GCATACATTTATATCACCCTGTGCC 60.106 44.000 0.00 0.00 32.98 5.01
679 1160 4.796110 ACATTTATATCACCCTGTGCCT 57.204 40.909 0.00 0.00 32.98 4.75
680 1161 4.464008 ACATTTATATCACCCTGTGCCTG 58.536 43.478 0.00 0.00 32.98 4.85
681 1162 4.079787 ACATTTATATCACCCTGTGCCTGT 60.080 41.667 0.00 0.00 32.98 4.00
682 1163 5.131977 ACATTTATATCACCCTGTGCCTGTA 59.868 40.000 0.00 0.00 32.98 2.74
683 1164 4.682778 TTATATCACCCTGTGCCTGTAC 57.317 45.455 0.00 0.00 32.98 2.90
684 1165 1.945580 TATCACCCTGTGCCTGTACA 58.054 50.000 0.00 0.00 32.98 2.90
685 1166 0.615331 ATCACCCTGTGCCTGTACAG 59.385 55.000 16.34 16.34 45.93 2.74
686 1167 1.672356 CACCCTGTGCCTGTACAGC 60.672 63.158 17.86 13.07 45.21 4.40
687 1168 2.146724 ACCCTGTGCCTGTACAGCA 61.147 57.895 17.86 15.46 45.21 4.41
688 1169 1.073025 CCCTGTGCCTGTACAGCAA 59.927 57.895 17.86 4.48 45.21 3.91
689 1170 0.537143 CCCTGTGCCTGTACAGCAAA 60.537 55.000 17.86 12.66 45.21 3.68
690 1171 0.593128 CCTGTGCCTGTACAGCAAAC 59.407 55.000 17.86 14.18 45.21 2.93
691 1172 0.593128 CTGTGCCTGTACAGCAAACC 59.407 55.000 17.86 8.06 43.02 3.27
692 1173 0.182537 TGTGCCTGTACAGCAAACCT 59.817 50.000 17.86 0.00 43.02 3.50
694 1175 0.537143 TGCCTGTACAGCAAACCTGG 60.537 55.000 17.86 3.19 46.14 4.45
695 1176 1.866853 GCCTGTACAGCAAACCTGGC 61.867 60.000 17.86 9.95 46.14 4.85
696 1177 0.537143 CCTGTACAGCAAACCTGGCA 60.537 55.000 17.86 0.00 46.14 4.92
697 1178 0.877071 CTGTACAGCAAACCTGGCAG 59.123 55.000 10.54 7.75 46.14 4.85
698 1179 1.172180 TGTACAGCAAACCTGGCAGC 61.172 55.000 9.56 0.00 46.14 5.25
699 1180 1.603455 TACAGCAAACCTGGCAGCC 60.603 57.895 9.56 3.66 46.14 4.85
700 1181 2.067932 TACAGCAAACCTGGCAGCCT 62.068 55.000 14.15 0.00 46.14 4.58
701 1182 1.303561 CAGCAAACCTGGCAGCCTA 60.304 57.895 14.15 0.00 37.93 3.93
702 1183 0.895100 CAGCAAACCTGGCAGCCTAA 60.895 55.000 14.15 0.00 37.93 2.69
703 1184 0.895559 AGCAAACCTGGCAGCCTAAC 60.896 55.000 14.15 0.00 0.00 2.34
704 1185 1.877576 GCAAACCTGGCAGCCTAACC 61.878 60.000 14.15 0.00 0.00 2.85
736 1217 3.446570 GCACCTCATGTGGCCTGC 61.447 66.667 13.75 12.81 45.55 4.85
737 1218 2.353958 CACCTCATGTGGCCTGCT 59.646 61.111 13.75 0.00 41.52 4.24
738 1219 1.603842 CACCTCATGTGGCCTGCTA 59.396 57.895 13.75 0.00 41.52 3.49
739 1220 0.035152 CACCTCATGTGGCCTGCTAA 60.035 55.000 13.75 0.00 41.52 3.09
742 1223 0.035152 CTCATGTGGCCTGCTAACCA 60.035 55.000 3.32 0.00 0.00 3.67
743 1224 0.035152 TCATGTGGCCTGCTAACCAG 60.035 55.000 3.32 0.00 41.41 4.00
755 1236 4.074970 CTGCTAACCAGGATGACAAAAGT 58.925 43.478 0.00 0.00 39.69 2.66
828 1621 8.776376 TTTTCTTGGAAAAGAAATCATATGCC 57.224 30.769 12.90 0.00 45.12 4.40
829 1622 6.135290 TCTTGGAAAAGAAATCATATGCCG 57.865 37.500 0.00 0.00 0.00 5.69
849 1642 4.033358 GCCGTTGATTGATTGAGAGTACAG 59.967 45.833 0.00 0.00 0.00 2.74
877 1670 7.394016 TGATTGTATTTGACTTGCTCTCCTAA 58.606 34.615 0.00 0.00 0.00 2.69
933 1726 6.264744 AGGATTAAATTGATCTGCTCATGGTG 59.735 38.462 0.00 0.00 32.72 4.17
953 1746 0.109153 TCAAGCCAGTGATGCAGTGT 59.891 50.000 0.00 0.00 33.37 3.55
1102 1895 2.871182 TAGCTTCTGCCGTATCAGTG 57.129 50.000 0.00 0.00 40.80 3.66
1135 1928 9.594478 TTGTCGATTCAATAGCTTTTGTCTATA 57.406 29.630 15.30 0.00 0.00 1.31
1353 2146 4.464008 TCTCAAGCTCTCAAATTGTGGTT 58.536 39.130 0.00 0.00 0.00 3.67
1360 2153 5.069516 AGCTCTCAAATTGTGGTTTTGACAT 59.930 36.000 0.00 0.00 37.97 3.06
1372 2165 4.280425 TGGTTTTGACATTGCTCATGCTTA 59.720 37.500 0.00 0.00 40.48 3.09
1404 2197 5.877564 GGAGATCTTTGTTTCACTCTTAGGG 59.122 44.000 0.00 0.00 0.00 3.53
1630 2423 1.215673 TGGTCTTTGGGTACTTTGCCA 59.784 47.619 0.00 0.00 0.00 4.92
1749 2542 4.079970 TCTTCTCACTATCAGTCACCGTT 58.920 43.478 0.00 0.00 0.00 4.44
1833 2626 1.602888 AGGCCTCTTGTTGCTGCTG 60.603 57.895 0.00 0.00 0.00 4.41
1890 2683 1.480137 CTCTTCCTGAGGCTACTGGTG 59.520 57.143 0.00 0.00 39.08 4.17
1906 2699 1.846124 GTGTGGTTCCTGGGGAGGA 60.846 63.158 0.00 0.00 35.93 3.71
1958 2751 0.107848 AATAACCCCGAGGAAGTGCG 60.108 55.000 0.00 0.00 36.73 5.34
1975 2768 3.490526 AGTGCGTTTTGCTAATTTGCTTG 59.509 39.130 12.99 0.43 46.63 4.01
2070 2863 5.397326 GCTGTTGATTGGAATTCTTCAGTC 58.603 41.667 5.23 3.16 0.00 3.51
2221 3017 6.414079 GTCATGATGTAAGTTCATTACTGCG 58.586 40.000 0.00 0.00 43.61 5.18
2300 3105 6.218746 ACTTGCTTTGGAATCTCAAATTCAC 58.781 36.000 0.72 0.00 36.24 3.18
2405 3216 3.553828 TGAGAACACGAAAGGGAAAGT 57.446 42.857 0.00 0.00 38.45 2.66
2487 3301 1.307355 TGATGGTTGCCTGCATCACG 61.307 55.000 0.00 0.00 0.00 4.35
2628 3450 5.936956 AGCAAAGATGGAGAAAAGACAGTAG 59.063 40.000 0.00 0.00 0.00 2.57
2632 3454 3.936372 TGGAGAAAAGACAGTAGGACG 57.064 47.619 0.00 0.00 0.00 4.79
2634 3456 3.893200 TGGAGAAAAGACAGTAGGACGAA 59.107 43.478 0.00 0.00 0.00 3.85
2650 3472 4.579753 AGGACGAAGGTAGCATAGACTAAC 59.420 45.833 0.00 0.00 0.00 2.34
2677 3499 2.819595 CAGTTGCGGCATAGCGGT 60.820 61.111 2.28 0.00 40.67 5.68
2749 3588 5.227238 ACACGATACTAAACTAGGACACG 57.773 43.478 0.00 0.00 0.00 4.49
2757 3596 9.881529 GATACTAAACTAGGACACGAAATCTAG 57.118 37.037 0.00 0.00 36.29 2.43
2896 3738 2.842496 AGAGATCATCTGCCAGGACAAA 59.158 45.455 0.00 0.00 36.69 2.83
2947 3789 4.901868 ACGGAGGAAAGTTTGTGCTAATA 58.098 39.130 0.00 0.00 0.00 0.98
2977 3819 7.726409 CATGCTCTATGGAAGGCTTAAGGCT 62.726 48.000 24.88 24.88 41.86 4.58
3055 3897 4.046286 TGGAAAGGCAGATGTACCAAAT 57.954 40.909 0.00 0.00 0.00 2.32
3119 3961 8.352942 GGCTTCTAATTGGATTATAGTTTGTGG 58.647 37.037 0.00 0.00 0.00 4.17
3151 3993 2.760092 TGCAAAGGACAAGCTTCTGTTT 59.240 40.909 0.00 0.00 0.00 2.83
3157 3999 1.268079 GACAAGCTTCTGTTTCCCTGC 59.732 52.381 0.00 0.00 0.00 4.85
3159 4001 2.106511 ACAAGCTTCTGTTTCCCTGCTA 59.893 45.455 0.00 0.00 0.00 3.49
3172 4014 4.640771 TCCCTGCTAAAGTCATCTTTGT 57.359 40.909 3.85 0.00 42.86 2.83
3178 4020 7.094205 CCCTGCTAAAGTCATCTTTGTATTTGT 60.094 37.037 3.85 0.00 42.86 2.83
3212 4055 6.182627 TCAGGTATCAATGCAACTGAAGAAT 58.817 36.000 6.00 0.00 0.00 2.40
3264 4107 2.058705 TGTAACCACATGAGTTCCCCA 58.941 47.619 0.00 0.00 0.00 4.96
3269 4118 2.094675 CCACATGAGTTCCCCACAATC 58.905 52.381 0.00 0.00 0.00 2.67
3299 4148 9.076596 GCGAAAGAGAAAGCAAATATTATTTGT 57.923 29.630 23.42 12.16 0.00 2.83
3494 4345 7.424227 TTCAAAGCCTAAAATTTGCATTCAG 57.576 32.000 0.00 0.00 36.55 3.02
3507 4358 1.198637 GCATTCAGATAATGCCTCGGC 59.801 52.381 10.83 0.00 45.31 5.54
3530 4381 6.294731 GGCATATTTGTTGAGGTCTTTGAACT 60.295 38.462 0.00 0.00 29.20 3.01
3608 4459 1.497286 TGGAAACCCAGCTAACAGGTT 59.503 47.619 4.31 4.31 45.79 3.50
3631 4482 8.557029 GGTTTGAGTTATACGCTAATGCTTAAT 58.443 33.333 0.00 0.00 36.97 1.40
3670 4521 5.756950 TTGAAGAAATAACTCTACACGCG 57.243 39.130 3.53 3.53 0.00 6.01
3693 4544 2.910544 TCACTTAAGGCCAGTAGGGAA 58.089 47.619 5.01 0.00 40.01 3.97
3720 4571 7.032580 CCAGAGTCAAAACAAACACACAAATA 58.967 34.615 0.00 0.00 0.00 1.40
3734 4585 6.620678 ACACACAAATAATGCAAGTGGATAC 58.379 36.000 0.00 0.00 35.27 2.24
3773 4624 3.145286 AGCCTTCTCTGCTGTCTTTTTC 58.855 45.455 0.00 0.00 37.76 2.29
3786 4637 7.793902 TGCTGTCTTTTTCGAAAGTAGTAATC 58.206 34.615 10.98 6.56 0.00 1.75
3791 4642 9.543018 GTCTTTTTCGAAAGTAGTAATCCATTG 57.457 33.333 10.98 0.00 0.00 2.82
3801 4652 6.294473 AGTAGTAATCCATTGCCATCTTCAG 58.706 40.000 0.00 0.00 0.00 3.02
3819 4670 7.869016 TCTTCAGAACAGTAACAATTACTCG 57.131 36.000 0.00 0.00 44.32 4.18
3825 4676 8.219105 CAGAACAGTAACAATTACTCGGTTTAC 58.781 37.037 0.00 0.00 44.32 2.01
3907 4758 0.179124 CTAAGAGCAGTCCCAGTCGC 60.179 60.000 0.00 0.00 0.00 5.19
3961 4816 8.040716 AGATGTTTTAACAAGGAAAGGTATCG 57.959 34.615 0.00 0.00 43.03 2.92
3977 4832 5.848406 AGGTATCGACTCCATGATTTTCTC 58.152 41.667 9.83 0.00 0.00 2.87
3985 4840 6.749578 CGACTCCATGATTTTCTCTATATCGG 59.250 42.308 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 8.539770 TGTTTGACATGCTTTGTAAAGAAAAA 57.460 26.923 8.47 0.00 39.18 1.94
53 54 7.319646 ACTGTTTGACATGCTTTGTAAAGAAA 58.680 30.769 8.47 0.00 39.18 2.52
54 55 6.862209 ACTGTTTGACATGCTTTGTAAAGAA 58.138 32.000 8.47 0.00 39.18 2.52
55 56 6.449635 ACTGTTTGACATGCTTTGTAAAGA 57.550 33.333 8.47 0.00 39.18 2.52
56 57 7.165812 GTGTACTGTTTGACATGCTTTGTAAAG 59.834 37.037 0.00 0.05 39.18 1.85
58 59 6.317642 AGTGTACTGTTTGACATGCTTTGTAA 59.682 34.615 0.00 0.00 39.18 2.41
59 60 5.820423 AGTGTACTGTTTGACATGCTTTGTA 59.180 36.000 0.00 0.00 39.18 2.41
60 61 4.640201 AGTGTACTGTTTGACATGCTTTGT 59.360 37.500 0.00 0.00 42.79 2.83
61 62 5.173774 AGTGTACTGTTTGACATGCTTTG 57.826 39.130 0.00 0.00 0.00 2.77
63 64 3.815401 GGAGTGTACTGTTTGACATGCTT 59.185 43.478 0.00 0.00 0.00 3.91
65 66 2.484264 GGGAGTGTACTGTTTGACATGC 59.516 50.000 0.00 0.00 0.00 4.06
66 67 3.997021 GAGGGAGTGTACTGTTTGACATG 59.003 47.826 0.00 0.00 0.00 3.21
67 68 3.306088 CGAGGGAGTGTACTGTTTGACAT 60.306 47.826 0.00 0.00 0.00 3.06
68 69 2.035449 CGAGGGAGTGTACTGTTTGACA 59.965 50.000 0.00 0.00 0.00 3.58
69 70 2.035576 ACGAGGGAGTGTACTGTTTGAC 59.964 50.000 0.00 0.00 0.00 3.18
70 71 2.313317 ACGAGGGAGTGTACTGTTTGA 58.687 47.619 0.00 0.00 0.00 2.69
71 72 2.814280 ACGAGGGAGTGTACTGTTTG 57.186 50.000 0.00 0.00 0.00 2.93
72 73 2.036862 GGAACGAGGGAGTGTACTGTTT 59.963 50.000 0.00 0.00 0.00 2.83
73 74 1.617357 GGAACGAGGGAGTGTACTGTT 59.383 52.381 0.00 0.00 0.00 3.16
74 75 1.254954 GGAACGAGGGAGTGTACTGT 58.745 55.000 0.00 0.00 0.00 3.55
75 76 0.531200 GGGAACGAGGGAGTGTACTG 59.469 60.000 0.00 0.00 0.00 2.74
76 77 2.973148 GGGAACGAGGGAGTGTACT 58.027 57.895 0.00 0.00 0.00 2.73
89 90 2.690778 GGTGATGTGCTGCGGGAAC 61.691 63.158 0.00 0.00 0.00 3.62
90 91 2.359850 GGTGATGTGCTGCGGGAA 60.360 61.111 0.00 0.00 0.00 3.97
94 95 3.049674 AACGGGTGATGTGCTGCG 61.050 61.111 0.00 0.00 0.00 5.18
95 96 1.514678 TTCAACGGGTGATGTGCTGC 61.515 55.000 0.00 0.00 35.70 5.25
97 98 1.812571 GATTTCAACGGGTGATGTGCT 59.187 47.619 0.00 0.00 35.70 4.40
99 100 4.475944 GAAAGATTTCAACGGGTGATGTG 58.524 43.478 0.00 0.00 35.70 3.21
100 101 3.506067 GGAAAGATTTCAACGGGTGATGT 59.494 43.478 0.00 0.00 38.92 3.06
102 103 3.761897 TGGAAAGATTTCAACGGGTGAT 58.238 40.909 0.00 0.00 38.92 3.06
105 106 3.509967 GGAATGGAAAGATTTCAACGGGT 59.490 43.478 7.56 0.00 38.92 5.28
106 107 3.509575 TGGAATGGAAAGATTTCAACGGG 59.490 43.478 7.56 0.00 38.92 5.28
107 108 4.782019 TGGAATGGAAAGATTTCAACGG 57.218 40.909 7.56 0.00 38.92 4.44
108 109 6.389091 TCAATGGAATGGAAAGATTTCAACG 58.611 36.000 7.56 0.00 38.92 4.10
109 110 8.606040 TTTCAATGGAATGGAAAGATTTCAAC 57.394 30.769 7.56 0.00 41.21 3.18
110 111 9.624373 TTTTTCAATGGAATGGAAAGATTTCAA 57.376 25.926 7.56 0.00 46.30 2.69
133 134 6.936279 TCTGTAGCTAGAGTAGTGCATTTTT 58.064 36.000 16.81 0.00 0.00 1.94
135 136 5.068460 CCTCTGTAGCTAGAGTAGTGCATTT 59.932 44.000 16.81 0.00 42.09 2.32
136 137 4.582656 CCTCTGTAGCTAGAGTAGTGCATT 59.417 45.833 16.81 0.00 42.09 3.56
137 138 4.141287 CCTCTGTAGCTAGAGTAGTGCAT 58.859 47.826 16.81 0.00 42.09 3.96
138 139 3.200165 TCCTCTGTAGCTAGAGTAGTGCA 59.800 47.826 16.81 0.00 42.09 4.57
139 140 3.811083 TCCTCTGTAGCTAGAGTAGTGC 58.189 50.000 16.81 0.00 42.09 4.40
140 141 6.037830 GTCTTTCCTCTGTAGCTAGAGTAGTG 59.962 46.154 16.81 6.83 42.09 2.74
141 142 6.117488 GTCTTTCCTCTGTAGCTAGAGTAGT 58.883 44.000 16.81 0.00 42.09 2.73
142 143 6.037830 GTGTCTTTCCTCTGTAGCTAGAGTAG 59.962 46.154 16.81 12.40 42.09 2.57
143 144 5.881443 GTGTCTTTCCTCTGTAGCTAGAGTA 59.119 44.000 16.81 4.24 42.09 2.59
144 145 4.703093 GTGTCTTTCCTCTGTAGCTAGAGT 59.297 45.833 16.81 0.00 42.09 3.24
145 146 4.702612 TGTGTCTTTCCTCTGTAGCTAGAG 59.297 45.833 11.64 11.64 43.04 2.43
147 148 5.590530 ATGTGTCTTTCCTCTGTAGCTAG 57.409 43.478 0.00 0.00 0.00 3.42
148 149 5.246203 ACAATGTGTCTTTCCTCTGTAGCTA 59.754 40.000 0.00 0.00 0.00 3.32
149 150 4.040952 ACAATGTGTCTTTCCTCTGTAGCT 59.959 41.667 0.00 0.00 0.00 3.32
150 151 4.319177 ACAATGTGTCTTTCCTCTGTAGC 58.681 43.478 0.00 0.00 0.00 3.58
151 152 5.119279 CGAACAATGTGTCTTTCCTCTGTAG 59.881 44.000 0.00 0.00 0.00 2.74
155 156 4.073293 ACGAACAATGTGTCTTTCCTCT 57.927 40.909 0.00 0.00 0.00 3.69
156 157 4.748102 TGTACGAACAATGTGTCTTTCCTC 59.252 41.667 0.00 0.00 30.91 3.71
157 158 4.699637 TGTACGAACAATGTGTCTTTCCT 58.300 39.130 0.00 0.00 30.91 3.36
159 160 4.748102 TCCTGTACGAACAATGTGTCTTTC 59.252 41.667 0.00 0.00 34.49 2.62
160 161 4.510340 GTCCTGTACGAACAATGTGTCTTT 59.490 41.667 0.00 0.00 34.49 2.52
161 162 4.056050 GTCCTGTACGAACAATGTGTCTT 58.944 43.478 0.00 0.00 34.49 3.01
175 176 3.428589 GGTCAGGTTACATCGTCCTGTAC 60.429 52.174 9.71 7.18 46.04 2.90
176 177 2.756760 GGTCAGGTTACATCGTCCTGTA 59.243 50.000 9.71 0.00 46.04 2.74
177 178 1.549170 GGTCAGGTTACATCGTCCTGT 59.451 52.381 9.71 0.00 46.04 4.00
179 180 2.233305 AGGTCAGGTTACATCGTCCT 57.767 50.000 0.00 0.00 0.00 3.85
181 182 2.496470 AGGAAGGTCAGGTTACATCGTC 59.504 50.000 0.00 0.00 0.00 4.20
183 184 2.496070 TCAGGAAGGTCAGGTTACATCG 59.504 50.000 0.00 0.00 0.00 3.84
184 185 4.553330 TTCAGGAAGGTCAGGTTACATC 57.447 45.455 0.00 0.00 0.00 3.06
185 186 4.289672 ACATTCAGGAAGGTCAGGTTACAT 59.710 41.667 0.00 0.00 28.03 2.29
186 187 3.650942 ACATTCAGGAAGGTCAGGTTACA 59.349 43.478 0.00 0.00 28.03 2.41
187 188 4.287766 ACATTCAGGAAGGTCAGGTTAC 57.712 45.455 0.00 0.00 28.03 2.50
194 195 2.961526 TAGCGACATTCAGGAAGGTC 57.038 50.000 14.84 14.84 45.46 3.85
195 196 2.766263 TCATAGCGACATTCAGGAAGGT 59.234 45.455 0.00 0.00 38.10 3.50
196 197 3.459232 TCATAGCGACATTCAGGAAGG 57.541 47.619 0.00 0.00 0.00 3.46
197 198 4.183865 TGTTCATAGCGACATTCAGGAAG 58.816 43.478 0.00 0.00 0.00 3.46
198 199 4.200838 TGTTCATAGCGACATTCAGGAA 57.799 40.909 0.00 0.00 0.00 3.36
200 201 3.684305 TGTTGTTCATAGCGACATTCAGG 59.316 43.478 0.00 0.00 0.00 3.86
202 203 3.125146 GCTGTTGTTCATAGCGACATTCA 59.875 43.478 0.00 0.00 30.70 2.57
204 205 3.073678 TGCTGTTGTTCATAGCGACATT 58.926 40.909 0.00 0.00 40.24 2.71
205 206 2.698803 TGCTGTTGTTCATAGCGACAT 58.301 42.857 0.00 0.00 40.24 3.06
206 207 2.162319 TGCTGTTGTTCATAGCGACA 57.838 45.000 0.00 0.00 40.24 4.35
207 208 2.726066 GCTTGCTGTTGTTCATAGCGAC 60.726 50.000 0.00 0.00 40.24 5.19
208 209 1.464608 GCTTGCTGTTGTTCATAGCGA 59.535 47.619 0.00 0.00 40.24 4.93
210 211 2.860062 CTGCTTGCTGTTGTTCATAGC 58.140 47.619 0.00 0.00 37.93 2.97
211 212 2.227149 TGCTGCTTGCTGTTGTTCATAG 59.773 45.455 0.00 0.00 43.37 2.23
213 214 1.000607 CTGCTGCTTGCTGTTGTTCAT 60.001 47.619 0.00 0.00 43.37 2.57
215 216 0.938168 GCTGCTGCTTGCTGTTGTTC 60.938 55.000 8.53 0.00 43.37 3.18
218 219 0.524414 TATGCTGCTGCTTGCTGTTG 59.476 50.000 17.00 0.00 43.37 3.33
219 220 1.134367 CATATGCTGCTGCTTGCTGTT 59.866 47.619 17.00 6.83 43.37 3.16
220 221 0.738975 CATATGCTGCTGCTTGCTGT 59.261 50.000 17.00 9.49 43.37 4.40
221 222 0.030773 CCATATGCTGCTGCTTGCTG 59.969 55.000 17.00 11.61 43.37 4.41
223 224 0.458669 AACCATATGCTGCTGCTTGC 59.541 50.000 17.00 6.23 40.48 4.01
225 226 2.022195 CTCAACCATATGCTGCTGCTT 58.978 47.619 17.00 12.79 40.48 3.91
226 227 1.676746 CTCAACCATATGCTGCTGCT 58.323 50.000 17.00 5.09 40.48 4.24
227 228 0.666913 CCTCAACCATATGCTGCTGC 59.333 55.000 8.89 8.89 40.20 5.25
229 230 1.842562 AGTCCTCAACCATATGCTGCT 59.157 47.619 0.00 0.00 0.00 4.24
230 231 1.945394 CAGTCCTCAACCATATGCTGC 59.055 52.381 0.00 0.00 0.00 5.25
231 232 2.092753 ACCAGTCCTCAACCATATGCTG 60.093 50.000 0.00 0.00 0.00 4.41
232 233 2.200081 ACCAGTCCTCAACCATATGCT 58.800 47.619 0.00 0.00 0.00 3.79
233 234 2.717639 ACCAGTCCTCAACCATATGC 57.282 50.000 0.00 0.00 0.00 3.14
234 235 6.270000 TCCTTATACCAGTCCTCAACCATATG 59.730 42.308 0.00 0.00 0.00 1.78
237 238 4.631234 TCCTTATACCAGTCCTCAACCAT 58.369 43.478 0.00 0.00 0.00 3.55
239 240 3.181464 GCTCCTTATACCAGTCCTCAACC 60.181 52.174 0.00 0.00 0.00 3.77
240 241 3.451178 TGCTCCTTATACCAGTCCTCAAC 59.549 47.826 0.00 0.00 0.00 3.18
241 242 3.451178 GTGCTCCTTATACCAGTCCTCAA 59.549 47.826 0.00 0.00 0.00 3.02
242 243 3.031736 GTGCTCCTTATACCAGTCCTCA 58.968 50.000 0.00 0.00 0.00 3.86
243 244 3.068873 CAGTGCTCCTTATACCAGTCCTC 59.931 52.174 0.00 0.00 0.00 3.71
245 246 2.766828 ACAGTGCTCCTTATACCAGTCC 59.233 50.000 0.00 0.00 0.00 3.85
246 247 3.430929 CCACAGTGCTCCTTATACCAGTC 60.431 52.174 0.00 0.00 0.00 3.51
248 249 2.158900 CCCACAGTGCTCCTTATACCAG 60.159 54.545 0.00 0.00 0.00 4.00
249 250 1.837439 CCCACAGTGCTCCTTATACCA 59.163 52.381 0.00 0.00 0.00 3.25
250 251 1.141053 CCCCACAGTGCTCCTTATACC 59.859 57.143 0.00 0.00 0.00 2.73
251 252 1.838077 ACCCCACAGTGCTCCTTATAC 59.162 52.381 0.00 0.00 0.00 1.47
252 253 1.837439 CACCCCACAGTGCTCCTTATA 59.163 52.381 0.00 0.00 0.00 0.98
253 254 0.620556 CACCCCACAGTGCTCCTTAT 59.379 55.000 0.00 0.00 0.00 1.73
254 255 2.066340 CACCCCACAGTGCTCCTTA 58.934 57.895 0.00 0.00 0.00 2.69
255 256 2.839098 CACCCCACAGTGCTCCTT 59.161 61.111 0.00 0.00 0.00 3.36
296 298 1.143305 GTATAGGCTGATGCGTGCAG 58.857 55.000 0.00 0.00 40.82 4.41
312 314 8.853126 CAAATGATGTAAGGGTGATTCATGTAT 58.147 33.333 0.00 0.00 0.00 2.29
327 330 6.244654 TGTGACCATCCTTCAAATGATGTAA 58.755 36.000 7.09 0.00 37.30 2.41
330 333 5.648178 TTGTGACCATCCTTCAAATGATG 57.352 39.130 2.17 2.17 38.45 3.07
369 372 2.277084 ACACACTTGTCGTCAGGAAAC 58.723 47.619 0.00 0.00 0.00 2.78
378 381 4.208460 CAGGTACTACAAACACACTTGTCG 59.792 45.833 0.00 0.00 40.08 4.35
383 386 3.494398 CCTGCAGGTACTACAAACACACT 60.494 47.826 25.53 0.00 36.02 3.55
384 387 2.806244 CCTGCAGGTACTACAAACACAC 59.194 50.000 25.53 0.00 36.02 3.82
429 432 3.742369 GGTCCATGTGCAACTGATTTTTG 59.258 43.478 0.00 0.00 38.04 2.44
435 438 0.602638 GTCGGTCCATGTGCAACTGA 60.603 55.000 0.00 0.00 38.04 3.41
480 961 4.640805 TTATTGAACGTTGACGAAGAGC 57.359 40.909 5.00 0.00 43.02 4.09
519 1000 4.274069 CGTGCCTTCATTCACAATAATCG 58.726 43.478 0.00 0.00 33.03 3.34
524 1005 1.246649 TGCGTGCCTTCATTCACAAT 58.753 45.000 0.00 0.00 33.03 2.71
525 1006 1.246649 ATGCGTGCCTTCATTCACAA 58.753 45.000 0.00 0.00 33.03 3.33
526 1007 2.106477 TATGCGTGCCTTCATTCACA 57.894 45.000 0.00 0.00 33.03 3.58
527 1008 3.065233 TGAATATGCGTGCCTTCATTCAC 59.935 43.478 0.00 0.00 29.84 3.18
528 1009 3.277715 TGAATATGCGTGCCTTCATTCA 58.722 40.909 0.00 0.00 31.77 2.57
529 1010 3.969117 TGAATATGCGTGCCTTCATTC 57.031 42.857 0.00 0.00 0.00 2.67
530 1011 3.696051 ACTTGAATATGCGTGCCTTCATT 59.304 39.130 0.00 0.00 0.00 2.57
531 1012 3.065786 CACTTGAATATGCGTGCCTTCAT 59.934 43.478 0.00 0.00 0.00 2.57
532 1013 2.419673 CACTTGAATATGCGTGCCTTCA 59.580 45.455 0.00 0.00 0.00 3.02
533 1014 2.420022 ACACTTGAATATGCGTGCCTTC 59.580 45.455 0.00 0.00 0.00 3.46
534 1015 2.436417 ACACTTGAATATGCGTGCCTT 58.564 42.857 0.00 0.00 0.00 4.35
535 1016 2.113860 ACACTTGAATATGCGTGCCT 57.886 45.000 0.00 0.00 0.00 4.75
536 1017 3.559655 TCATACACTTGAATATGCGTGCC 59.440 43.478 0.00 0.00 0.00 5.01
537 1018 4.794248 TCATACACTTGAATATGCGTGC 57.206 40.909 0.00 0.00 0.00 5.34
538 1019 6.630045 CACAATCATACACTTGAATATGCGTG 59.370 38.462 0.00 0.00 0.00 5.34
539 1020 6.316140 ACACAATCATACACTTGAATATGCGT 59.684 34.615 0.00 0.00 0.00 5.24
540 1021 6.630045 CACACAATCATACACTTGAATATGCG 59.370 38.462 0.00 0.00 0.00 4.73
541 1022 7.430211 CACACACAATCATACACTTGAATATGC 59.570 37.037 0.00 0.00 0.00 3.14
542 1023 8.667463 TCACACACAATCATACACTTGAATATG 58.333 33.333 0.00 0.00 0.00 1.78
543 1024 8.668353 GTCACACACAATCATACACTTGAATAT 58.332 33.333 0.00 0.00 0.00 1.28
544 1025 7.659390 TGTCACACACAATCATACACTTGAATA 59.341 33.333 0.00 0.00 29.30 1.75
545 1026 6.486320 TGTCACACACAATCATACACTTGAAT 59.514 34.615 0.00 0.00 29.30 2.57
546 1027 5.819901 TGTCACACACAATCATACACTTGAA 59.180 36.000 0.00 0.00 29.30 2.69
547 1028 5.363939 TGTCACACACAATCATACACTTGA 58.636 37.500 0.00 0.00 29.30 3.02
548 1029 5.671742 TGTCACACACAATCATACACTTG 57.328 39.130 0.00 0.00 29.30 3.16
560 1041 2.158696 TCCATCCACATTGTCACACACA 60.159 45.455 0.00 0.00 0.00 3.72
561 1042 2.503331 TCCATCCACATTGTCACACAC 58.497 47.619 0.00 0.00 0.00 3.82
562 1043 2.947127 TCCATCCACATTGTCACACA 57.053 45.000 0.00 0.00 0.00 3.72
563 1044 4.789012 AATTCCATCCACATTGTCACAC 57.211 40.909 0.00 0.00 0.00 3.82
564 1045 7.396907 AGAAATAATTCCATCCACATTGTCACA 59.603 33.333 0.00 0.00 36.12 3.58
565 1046 7.775120 AGAAATAATTCCATCCACATTGTCAC 58.225 34.615 0.00 0.00 36.12 3.67
566 1047 7.959658 AGAAATAATTCCATCCACATTGTCA 57.040 32.000 0.00 0.00 36.12 3.58
567 1048 7.922811 GGAAGAAATAATTCCATCCACATTGTC 59.077 37.037 7.70 0.00 44.74 3.18
568 1049 7.785033 GGAAGAAATAATTCCATCCACATTGT 58.215 34.615 7.70 0.00 44.74 2.71
579 1060 6.655003 TGTGTGAGTGAGGAAGAAATAATTCC 59.345 38.462 0.00 0.00 45.56 3.01
580 1061 7.672983 TGTGTGAGTGAGGAAGAAATAATTC 57.327 36.000 0.00 0.00 35.70 2.17
581 1062 7.667219 ACATGTGTGAGTGAGGAAGAAATAATT 59.333 33.333 0.00 0.00 0.00 1.40
582 1063 7.170965 ACATGTGTGAGTGAGGAAGAAATAAT 58.829 34.615 0.00 0.00 0.00 1.28
583 1064 6.533730 ACATGTGTGAGTGAGGAAGAAATAA 58.466 36.000 0.00 0.00 0.00 1.40
584 1065 6.114187 ACATGTGTGAGTGAGGAAGAAATA 57.886 37.500 0.00 0.00 0.00 1.40
585 1066 4.978099 ACATGTGTGAGTGAGGAAGAAAT 58.022 39.130 0.00 0.00 0.00 2.17
586 1067 4.422073 ACATGTGTGAGTGAGGAAGAAA 57.578 40.909 0.00 0.00 0.00 2.52
587 1068 4.380531 GAACATGTGTGAGTGAGGAAGAA 58.619 43.478 0.00 0.00 0.00 2.52
588 1069 3.244215 GGAACATGTGTGAGTGAGGAAGA 60.244 47.826 0.00 0.00 0.00 2.87
589 1070 3.070018 GGAACATGTGTGAGTGAGGAAG 58.930 50.000 0.00 0.00 0.00 3.46
590 1071 2.224523 GGGAACATGTGTGAGTGAGGAA 60.225 50.000 0.00 0.00 0.00 3.36
591 1072 1.347707 GGGAACATGTGTGAGTGAGGA 59.652 52.381 0.00 0.00 0.00 3.71
592 1073 1.072173 TGGGAACATGTGTGAGTGAGG 59.928 52.381 0.00 0.00 33.40 3.86
593 1074 2.146342 GTGGGAACATGTGTGAGTGAG 58.854 52.381 0.00 0.00 46.14 3.51
594 1075 1.768275 AGTGGGAACATGTGTGAGTGA 59.232 47.619 0.00 0.00 46.14 3.41
595 1076 2.260844 AGTGGGAACATGTGTGAGTG 57.739 50.000 0.00 0.00 46.14 3.51
596 1077 2.172505 TCAAGTGGGAACATGTGTGAGT 59.827 45.455 0.00 0.00 46.14 3.41
597 1078 2.849942 TCAAGTGGGAACATGTGTGAG 58.150 47.619 0.00 0.00 46.14 3.51
598 1079 3.507162 ATCAAGTGGGAACATGTGTGA 57.493 42.857 0.00 0.00 46.14 3.58
599 1080 5.003160 TCTTATCAAGTGGGAACATGTGTG 58.997 41.667 0.00 0.00 46.14 3.82
600 1081 5.241403 TCTTATCAAGTGGGAACATGTGT 57.759 39.130 0.00 0.00 46.14 3.72
601 1082 6.573664 TTTCTTATCAAGTGGGAACATGTG 57.426 37.500 0.00 0.00 46.14 3.21
602 1083 7.781324 AATTTCTTATCAAGTGGGAACATGT 57.219 32.000 0.00 0.00 46.14 3.21
603 1084 8.090214 ACAAATTTCTTATCAAGTGGGAACATG 58.910 33.333 0.00 0.00 46.14 3.21
604 1085 8.090214 CACAAATTTCTTATCAAGTGGGAACAT 58.910 33.333 0.00 0.00 46.14 2.71
605 1086 7.432869 CACAAATTTCTTATCAAGTGGGAACA 58.567 34.615 0.00 0.00 38.70 3.18
606 1087 6.366061 GCACAAATTTCTTATCAAGTGGGAAC 59.634 38.462 0.00 0.00 0.00 3.62
607 1088 6.267471 AGCACAAATTTCTTATCAAGTGGGAA 59.733 34.615 0.00 0.00 0.00 3.97
608 1089 5.774690 AGCACAAATTTCTTATCAAGTGGGA 59.225 36.000 0.00 0.00 0.00 4.37
609 1090 5.865552 CAGCACAAATTTCTTATCAAGTGGG 59.134 40.000 0.00 0.00 0.00 4.61
610 1091 5.346822 GCAGCACAAATTTCTTATCAAGTGG 59.653 40.000 0.00 0.00 0.00 4.00
611 1092 5.921976 TGCAGCACAAATTTCTTATCAAGTG 59.078 36.000 0.00 0.00 0.00 3.16
612 1093 6.088016 TGCAGCACAAATTTCTTATCAAGT 57.912 33.333 0.00 0.00 0.00 3.16
613 1094 7.329962 TGATTGCAGCACAAATTTCTTATCAAG 59.670 33.333 0.00 0.00 42.86 3.02
614 1095 7.116662 GTGATTGCAGCACAAATTTCTTATCAA 59.883 33.333 14.63 0.00 42.86 2.57
615 1096 6.587226 GTGATTGCAGCACAAATTTCTTATCA 59.413 34.615 14.63 0.00 42.86 2.15
616 1097 6.810182 AGTGATTGCAGCACAAATTTCTTATC 59.190 34.615 19.72 2.21 42.86 1.75
617 1098 6.588756 CAGTGATTGCAGCACAAATTTCTTAT 59.411 34.615 19.72 0.00 42.86 1.73
618 1099 5.921976 CAGTGATTGCAGCACAAATTTCTTA 59.078 36.000 19.72 0.00 42.86 2.10
619 1100 4.748102 CAGTGATTGCAGCACAAATTTCTT 59.252 37.500 19.72 0.00 42.86 2.52
620 1101 4.304110 CAGTGATTGCAGCACAAATTTCT 58.696 39.130 19.72 0.00 42.86 2.52
621 1102 4.640805 CAGTGATTGCAGCACAAATTTC 57.359 40.909 19.72 0.00 42.86 2.17
634 1115 3.940852 TGCAGTATAAGGTGCAGTGATTG 59.059 43.478 0.00 0.00 44.70 2.67
635 1116 4.220693 TGCAGTATAAGGTGCAGTGATT 57.779 40.909 0.00 0.00 44.70 2.57
636 1117 3.912496 TGCAGTATAAGGTGCAGTGAT 57.088 42.857 0.00 0.00 44.70 3.06
649 1130 8.605947 ACAGGGTGATATAAATGTATGCAGTAT 58.394 33.333 0.00 0.00 0.00 2.12
650 1131 7.877612 CACAGGGTGATATAAATGTATGCAGTA 59.122 37.037 0.00 0.00 35.23 2.74
651 1132 6.712095 CACAGGGTGATATAAATGTATGCAGT 59.288 38.462 0.00 0.00 35.23 4.40
652 1133 6.348786 GCACAGGGTGATATAAATGTATGCAG 60.349 42.308 0.00 0.00 35.23 4.41
653 1134 5.473162 GCACAGGGTGATATAAATGTATGCA 59.527 40.000 0.00 0.00 35.23 3.96
654 1135 5.106157 GGCACAGGGTGATATAAATGTATGC 60.106 44.000 0.00 0.00 35.23 3.14
655 1136 6.149973 CAGGCACAGGGTGATATAAATGTATG 59.850 42.308 0.00 0.00 35.23 2.39
656 1137 6.183361 ACAGGCACAGGGTGATATAAATGTAT 60.183 38.462 0.00 0.00 35.23 2.29
657 1138 5.131977 ACAGGCACAGGGTGATATAAATGTA 59.868 40.000 0.00 0.00 35.23 2.29
658 1139 4.079787 ACAGGCACAGGGTGATATAAATGT 60.080 41.667 0.00 0.00 35.23 2.71
659 1140 4.464008 ACAGGCACAGGGTGATATAAATG 58.536 43.478 0.00 0.00 35.23 2.32
660 1141 4.796110 ACAGGCACAGGGTGATATAAAT 57.204 40.909 0.00 0.00 35.23 1.40
661 1142 4.471747 TGTACAGGCACAGGGTGATATAAA 59.528 41.667 0.00 0.00 35.23 1.40
662 1143 4.034410 TGTACAGGCACAGGGTGATATAA 58.966 43.478 0.00 0.00 35.23 0.98
663 1144 3.641436 CTGTACAGGCACAGGGTGATATA 59.359 47.826 15.49 0.00 41.88 0.86
664 1145 2.435805 CTGTACAGGCACAGGGTGATAT 59.564 50.000 15.49 0.00 41.88 1.63
665 1146 1.831106 CTGTACAGGCACAGGGTGATA 59.169 52.381 15.49 0.00 41.88 2.15
666 1147 0.615331 CTGTACAGGCACAGGGTGAT 59.385 55.000 15.49 0.00 41.88 3.06
667 1148 2.057830 CTGTACAGGCACAGGGTGA 58.942 57.895 15.49 0.00 41.88 4.02
668 1149 1.672356 GCTGTACAGGCACAGGGTG 60.672 63.158 23.95 0.00 45.03 4.61
669 1150 1.705002 TTGCTGTACAGGCACAGGGT 61.705 55.000 23.95 0.00 45.03 4.34
670 1151 0.537143 TTTGCTGTACAGGCACAGGG 60.537 55.000 23.95 0.00 45.03 4.45
671 1152 0.593128 GTTTGCTGTACAGGCACAGG 59.407 55.000 23.95 0.00 45.03 4.00
673 1154 0.182537 AGGTTTGCTGTACAGGCACA 59.817 50.000 23.95 10.99 39.55 4.57
674 1155 0.593128 CAGGTTTGCTGTACAGGCAC 59.407 55.000 23.95 8.41 39.55 5.01
675 1156 0.537143 CCAGGTTTGCTGTACAGGCA 60.537 55.000 23.95 18.29 37.97 4.75
676 1157 1.866853 GCCAGGTTTGCTGTACAGGC 61.867 60.000 23.95 16.04 33.25 4.85
677 1158 0.537143 TGCCAGGTTTGCTGTACAGG 60.537 55.000 23.95 7.06 0.00 4.00
678 1159 0.877071 CTGCCAGGTTTGCTGTACAG 59.123 55.000 18.93 18.93 0.00 2.74
679 1160 1.172180 GCTGCCAGGTTTGCTGTACA 61.172 55.000 0.00 0.00 0.00 2.90
680 1161 1.581447 GCTGCCAGGTTTGCTGTAC 59.419 57.895 0.00 0.00 0.00 2.90
681 1162 1.603455 GGCTGCCAGGTTTGCTGTA 60.603 57.895 15.17 0.00 0.00 2.74
682 1163 2.067932 TAGGCTGCCAGGTTTGCTGT 62.068 55.000 22.65 0.00 0.00 4.40
683 1164 0.895100 TTAGGCTGCCAGGTTTGCTG 60.895 55.000 22.65 0.00 0.00 4.41
684 1165 0.895559 GTTAGGCTGCCAGGTTTGCT 60.896 55.000 22.65 0.00 0.00 3.91
685 1166 1.586541 GTTAGGCTGCCAGGTTTGC 59.413 57.895 22.65 0.00 0.00 3.68
686 1167 0.539438 TGGTTAGGCTGCCAGGTTTG 60.539 55.000 22.65 0.00 0.00 2.93
687 1168 0.409484 ATGGTTAGGCTGCCAGGTTT 59.591 50.000 22.65 1.45 38.27 3.27
688 1169 0.409484 AATGGTTAGGCTGCCAGGTT 59.591 50.000 22.65 1.88 38.27 3.50
689 1170 1.212935 CTAATGGTTAGGCTGCCAGGT 59.787 52.381 22.65 2.30 38.27 4.00
690 1171 1.972872 CTAATGGTTAGGCTGCCAGG 58.027 55.000 22.65 7.14 38.27 4.45
691 1172 1.133976 AGCTAATGGTTAGGCTGCCAG 60.134 52.381 22.65 7.75 38.27 4.85
692 1173 0.918983 AGCTAATGGTTAGGCTGCCA 59.081 50.000 22.65 13.66 39.33 4.92
693 1174 1.312815 CAGCTAATGGTTAGGCTGCC 58.687 55.000 11.65 11.65 33.76 4.85
694 1175 1.312815 CCAGCTAATGGTTAGGCTGC 58.687 55.000 0.00 0.00 44.91 5.25
704 1185 3.975992 GTGCGAACACCAGCTAATG 57.024 52.632 0.00 0.00 41.21 1.90
736 1217 5.308825 ACTCACTTTTGTCATCCTGGTTAG 58.691 41.667 0.00 0.00 0.00 2.34
737 1218 5.304686 ACTCACTTTTGTCATCCTGGTTA 57.695 39.130 0.00 0.00 0.00 2.85
738 1219 4.170468 ACTCACTTTTGTCATCCTGGTT 57.830 40.909 0.00 0.00 0.00 3.67
739 1220 3.864789 ACTCACTTTTGTCATCCTGGT 57.135 42.857 0.00 0.00 0.00 4.00
742 1223 9.003658 CAGTATTAAACTCACTTTTGTCATCCT 57.996 33.333 0.00 0.00 35.76 3.24
743 1224 7.750903 GCAGTATTAAACTCACTTTTGTCATCC 59.249 37.037 0.00 0.00 35.76 3.51
755 1236 7.548075 GGCACTAAGTTAGCAGTATTAAACTCA 59.452 37.037 9.92 0.00 35.76 3.41
826 1619 3.932710 TGTACTCTCAATCAATCAACGGC 59.067 43.478 0.00 0.00 0.00 5.68
827 1620 4.033358 GCTGTACTCTCAATCAATCAACGG 59.967 45.833 0.00 0.00 0.00 4.44
828 1621 4.627035 TGCTGTACTCTCAATCAATCAACG 59.373 41.667 0.00 0.00 0.00 4.10
829 1622 6.314648 TCATGCTGTACTCTCAATCAATCAAC 59.685 38.462 0.00 0.00 0.00 3.18
849 1642 5.888105 AGAGCAAGTCAAATACAATCATGC 58.112 37.500 0.00 0.00 0.00 4.06
877 1670 9.280456 TCCTAGTCTGGGTTTTAAAATCTATCT 57.720 33.333 10.90 8.74 0.00 1.98
933 1726 0.520404 CACTGCATCACTGGCTTGAC 59.480 55.000 0.00 0.00 0.00 3.18
953 1746 2.102420 ACTGGTGCTACTTATATGCGCA 59.898 45.455 14.96 14.96 38.76 6.09
1102 1895 7.426929 AAGCTATTGAATCGACAACATATCC 57.573 36.000 0.00 0.00 32.50 2.59
1353 2146 6.121590 TCCTATAAGCATGAGCAATGTCAAA 58.878 36.000 0.00 0.00 45.49 2.69
1360 2153 2.373169 CCCCTCCTATAAGCATGAGCAA 59.627 50.000 0.00 0.00 45.49 3.91
1372 2165 5.039645 TGAAACAAAGATCTCCCCTCCTAT 58.960 41.667 0.00 0.00 0.00 2.57
1404 2197 2.977914 TGGTTCACTCTAAGCATGAGC 58.022 47.619 0.00 0.00 42.56 4.26
1495 2288 0.742505 CATAGTGCCATGCTGTTGGG 59.257 55.000 3.61 0.00 37.24 4.12
1749 2542 2.747460 GCATTCGCACAGGAGGCA 60.747 61.111 0.00 0.00 38.36 4.75
1833 2626 2.894387 GCGAGCATCTGGCCACTC 60.894 66.667 0.00 6.12 46.50 3.51
1941 2734 1.474332 AACGCACTTCCTCGGGGTTA 61.474 55.000 0.00 0.00 36.16 2.85
1958 2751 5.230182 ACCTAGCAAGCAAATTAGCAAAAC 58.770 37.500 0.00 0.00 36.85 2.43
1975 2768 1.318576 AACACAGTTGGCAACCTAGC 58.681 50.000 25.81 1.39 0.00 3.42
2070 2863 2.125773 AAGAGCTGAGCCCATCAAAG 57.874 50.000 0.00 0.00 37.52 2.77
2221 3017 7.656707 AACATCAAATTAAATGAAGTGCCAC 57.343 32.000 6.91 0.00 29.97 5.01
2300 3105 3.059188 ACCAAGAAGTAAATTGTCGCACG 60.059 43.478 0.00 0.00 0.00 5.34
2405 3216 0.679505 CACCAACGACCCTCTCTTGA 59.320 55.000 0.00 0.00 0.00 3.02
2472 3286 1.523154 TTTCCGTGATGCAGGCAACC 61.523 55.000 0.00 0.00 37.17 3.77
2487 3301 3.078097 GTTTCTGAGCCTTCTCCTTTCC 58.922 50.000 0.00 0.00 38.58 3.13
2597 3415 1.906574 TCTCCATCTTTGCTAACCGGT 59.093 47.619 0.00 0.00 0.00 5.28
2604 3422 4.723309 ACTGTCTTTTCTCCATCTTTGCT 58.277 39.130 0.00 0.00 0.00 3.91
2628 3450 4.554330 CGTTAGTCTATGCTACCTTCGTCC 60.554 50.000 0.00 0.00 0.00 4.79
2632 3454 4.915158 ACCGTTAGTCTATGCTACCTTC 57.085 45.455 0.00 0.00 0.00 3.46
2634 3456 6.973460 ATTTACCGTTAGTCTATGCTACCT 57.027 37.500 0.00 0.00 0.00 3.08
2650 3472 0.027586 GCCGCAACTGCTATTTACCG 59.972 55.000 0.00 0.00 39.32 4.02
2667 3489 1.409427 ACTTCACTCTACCGCTATGCC 59.591 52.381 0.00 0.00 0.00 4.40
2675 3497 9.141400 CTGTTTATGAACTTACTTCACTCTACC 57.859 37.037 1.75 0.00 41.87 3.18
2677 3499 9.909644 GTCTGTTTATGAACTTACTTCACTCTA 57.090 33.333 1.75 0.00 41.87 2.43
2749 3588 3.462021 AGGCATTCACGAGCTAGATTTC 58.538 45.455 0.00 0.00 0.00 2.17
2757 3596 1.160137 AGTCAAAGGCATTCACGAGC 58.840 50.000 0.00 0.00 0.00 5.03
2783 3625 9.875675 GCAAAACAAAGCATACAAAATCATTTA 57.124 25.926 0.00 0.00 0.00 1.40
2784 3626 8.404000 TGCAAAACAAAGCATACAAAATCATTT 58.596 25.926 0.00 0.00 35.51 2.32
2788 3630 5.847515 GCTGCAAAACAAAGCATACAAAATC 59.152 36.000 0.00 0.00 40.42 2.17
2947 3789 3.749954 GCCTTCCATAGAGCATGACCAAT 60.750 47.826 0.00 0.00 36.69 3.16
2977 3819 1.697082 TACCCGTGGCCAGTGTGAAA 61.697 55.000 5.11 0.00 0.00 2.69
2981 3823 0.322187 GATTTACCCGTGGCCAGTGT 60.322 55.000 5.11 6.29 0.00 3.55
2984 3826 0.748005 CAGGATTTACCCGTGGCCAG 60.748 60.000 5.11 0.00 40.05 4.85
3055 3897 5.649395 AGTACACTAGCGACAGTTATACCAA 59.351 40.000 0.00 0.00 0.00 3.67
3147 3989 4.640771 AGATGACTTTAGCAGGGAAACA 57.359 40.909 0.00 0.00 0.00 2.83
3151 3993 4.640771 ACAAAGATGACTTTAGCAGGGA 57.359 40.909 0.00 0.00 43.41 4.20
3159 4001 8.450578 TGACTGACAAATACAAAGATGACTTT 57.549 30.769 0.00 0.00 45.75 2.66
3172 4014 8.021898 TGATACCTGATGATGACTGACAAATA 57.978 34.615 0.00 0.00 0.00 1.40
3178 4020 5.163280 TGCATTGATACCTGATGATGACTGA 60.163 40.000 0.00 0.00 0.00 3.41
3212 4055 3.144657 ACACATCAACAGATGGCTCAA 57.855 42.857 9.93 0.00 42.71 3.02
3264 4107 3.368236 GCTTTCTCTTTCGCTACGATTGT 59.632 43.478 0.00 0.00 35.23 2.71
3269 4118 3.788434 TTTGCTTTCTCTTTCGCTACG 57.212 42.857 0.00 0.00 0.00 3.51
3380 4229 9.647797 AACACTATCATTTCGTGTCTATAAACA 57.352 29.630 0.00 0.00 40.68 2.83
3408 4257 7.935520 TGAACTTCTATGTAGCAGAGTGATAG 58.064 38.462 0.00 0.00 0.00 2.08
3416 4266 6.214191 TCTCCTTGAACTTCTATGTAGCAG 57.786 41.667 0.00 0.00 0.00 4.24
3507 4358 7.592533 CACAGTTCAAAGACCTCAACAAATATG 59.407 37.037 0.00 0.00 0.00 1.78
3670 4521 2.104963 CCCTACTGGCCTTAAGTGATCC 59.895 54.545 3.32 0.00 0.00 3.36
3693 4544 3.088532 TGTGTTTGTTTTGACTCTGGCT 58.911 40.909 0.00 0.00 0.00 4.75
3720 4571 5.439721 TCAATAGCTGTATCCACTTGCATT 58.560 37.500 0.00 0.00 0.00 3.56
3741 4592 1.696336 AGAGAAGGCTCAGCAAACTCA 59.304 47.619 15.22 0.00 43.81 3.41
3751 4602 2.470983 AAAGACAGCAGAGAAGGCTC 57.529 50.000 0.00 0.00 40.23 4.70
3763 4614 8.306680 TGGATTACTACTTTCGAAAAAGACAG 57.693 34.615 20.85 8.44 43.90 3.51
3773 4624 5.760253 AGATGGCAATGGATTACTACTTTCG 59.240 40.000 0.00 0.00 0.00 3.46
3786 4637 3.087031 ACTGTTCTGAAGATGGCAATGG 58.913 45.455 0.00 0.00 0.00 3.16
3791 4642 5.886960 ATTGTTACTGTTCTGAAGATGGC 57.113 39.130 0.00 0.00 0.00 4.40
3801 4652 7.386025 AGGTAAACCGAGTAATTGTTACTGTTC 59.614 37.037 7.07 0.00 46.01 3.18
3819 4670 3.427863 CGACTGAAAACTCGAGGTAAACC 59.572 47.826 18.41 0.91 31.24 3.27
3832 4683 1.938861 GGCGTTGCTCGACTGAAAA 59.061 52.632 6.11 0.00 45.28 2.29
3929 4784 6.707440 TCCTTGTTAAAACATCTCTTGCAA 57.293 33.333 0.00 0.00 38.95 4.08
3961 4816 7.607250 ACCGATATAGAGAAAATCATGGAGTC 58.393 38.462 0.00 0.00 0.00 3.36
3977 4832 5.759506 ACAAGAGACAGTGACCGATATAG 57.240 43.478 0.00 0.00 0.00 1.31
3985 4840 3.531538 TGGTGAAACAAGAGACAGTGAC 58.468 45.455 0.00 0.00 39.98 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.