Multiple sequence alignment - TraesCS7B01G318300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G318300 chr7B 100.000 1500 0 0 957 2456 568390279 568391778 0.000000e+00 2771.0
1 TraesCS7B01G318300 chr7B 100.000 529 0 0 1 529 568389323 568389851 0.000000e+00 977.0
2 TraesCS7B01G318300 chr3B 93.515 879 42 8 971 1839 244662347 244661474 0.000000e+00 1293.0
3 TraesCS7B01G318300 chr3B 94.294 333 16 3 199 529 50936664 50936333 7.840000e-140 507.0
4 TraesCS7B01G318300 chr3B 96.774 279 9 0 1837 2115 824118355 824118077 1.330000e-127 466.0
5 TraesCS7B01G318300 chr3B 96.057 279 11 0 1837 2115 824105249 824104971 2.880000e-124 455.0
6 TraesCS7B01G318300 chr3B 94.306 281 16 0 1837 2117 51238649 51238369 4.850000e-117 431.0
7 TraesCS7B01G318300 chr3A 93.888 818 28 8 971 1776 197437168 197436361 0.000000e+00 1214.0
8 TraesCS7B01G318300 chr3A 93.713 334 15 4 198 529 360847883 360847554 1.700000e-136 496.0
9 TraesCS7B01G318300 chr3A 96.390 277 10 0 1837 2113 500895819 500895543 8.000000e-125 457.0
10 TraesCS7B01G318300 chr3A 74.576 472 85 21 1002 1447 163910127 163910589 9.030000e-40 174.0
11 TraesCS7B01G318300 chr5A 95.522 335 13 2 196 529 225793631 225793298 3.590000e-148 534.0
12 TraesCS7B01G318300 chr5A 95.166 331 9 5 201 529 496046720 496046395 1.300000e-142 516.0
13 TraesCS7B01G318300 chr5A 95.527 313 12 2 189 500 677171018 677170707 1.310000e-137 499.0
14 TraesCS7B01G318300 chr5A 94.700 283 15 0 1837 2119 496045464 496045182 8.060000e-120 440.0
15 TraesCS7B01G318300 chr5A 83.544 79 10 3 43 120 640268480 640268404 1.220000e-08 71.3
16 TraesCS7B01G318300 chr2A 95.495 333 13 2 198 529 774630190 774629859 4.650000e-147 531.0
17 TraesCS7B01G318300 chr2A 94.135 341 15 4 191 529 694467392 694467729 4.680000e-142 514.0
18 TraesCS7B01G318300 chr1B 94.895 333 15 2 198 529 649315559 649315890 1.010000e-143 520.0
19 TraesCS7B01G318300 chr2B 93.235 340 21 2 191 529 443151835 443151497 1.310000e-137 499.0
20 TraesCS7B01G318300 chr2B 95.668 277 12 0 1837 2113 9711505 9711781 1.730000e-121 446.0
21 TraesCS7B01G318300 chr3D 98.859 263 3 0 1577 1839 169792292 169792030 1.030000e-128 470.0
22 TraesCS7B01G318300 chr3D 73.707 464 95 14 1002 1447 144250197 144250651 3.270000e-34 156.0
23 TraesCS7B01G318300 chr3D 98.148 54 1 0 971 1024 169792342 169792289 7.230000e-16 95.3
24 TraesCS7B01G318300 chr6A 95.714 280 11 1 1837 2116 475413095 475412817 1.340000e-122 449.0
25 TraesCS7B01G318300 chr6A 94.286 280 16 0 1837 2116 416744322 416744043 1.750000e-116 429.0
26 TraesCS7B01G318300 chr4B 94.346 283 16 0 1834 2116 533504951 533505233 3.750000e-118 435.0
27 TraesCS7B01G318300 chr4B 95.652 46 1 1 76 120 561487166 561487211 3.390000e-09 73.1
28 TraesCS7B01G318300 chr7D 90.385 208 15 2 2120 2327 529966296 529966498 4.030000e-68 268.0
29 TraesCS7B01G318300 chr1A 94.000 50 1 2 72 120 313315324 313315276 9.420000e-10 75.0
30 TraesCS7B01G318300 chr4A 89.286 56 5 1 76 130 422283299 422283354 4.380000e-08 69.4
31 TraesCS7B01G318300 chr5D 91.837 49 3 1 76 123 402602930 402602882 1.580000e-07 67.6
32 TraesCS7B01G318300 chr4D 93.478 46 2 1 76 120 134860192 134860237 1.580000e-07 67.6
33 TraesCS7B01G318300 chr4D 91.837 49 3 1 76 123 296958193 296958145 1.580000e-07 67.6
34 TraesCS7B01G318300 chr4D 93.478 46 2 1 76 120 482044600 482044645 1.580000e-07 67.6
35 TraesCS7B01G318300 chr1D 91.837 49 3 1 76 123 258788048 258788000 1.580000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G318300 chr7B 568389323 568391778 2455 False 1874 2771 100.000 1 2456 2 chr7B.!!$F1 2455
1 TraesCS7B01G318300 chr3B 244661474 244662347 873 True 1293 1293 93.515 971 1839 1 chr3B.!!$R3 868
2 TraesCS7B01G318300 chr3A 197436361 197437168 807 True 1214 1214 93.888 971 1776 1 chr3A.!!$R1 805
3 TraesCS7B01G318300 chr5A 496045182 496046720 1538 True 478 516 94.933 201 2119 2 chr5A.!!$R4 1918

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
144 145 0.036105 TGGCTCGTGCATTCATGTCT 60.036 50.0 12.07 0.0 41.91 3.41 F
145 146 0.376152 GGCTCGTGCATTCATGTCTG 59.624 55.0 12.07 0.0 41.91 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1082 1085 1.518792 GCGGCGTAGAAGACCTTCC 60.519 63.158 9.37 0.0 40.33 3.46 R
2127 2562 1.887198 GACCGGAAGAGTGAGAACTCA 59.113 52.381 9.46 0.0 39.12 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.779860 ACACCAGTGAACATTTAGATTAGGT 58.220 36.000 4.48 0.00 0.00 3.08
25 26 7.231467 ACACCAGTGAACATTTAGATTAGGTT 58.769 34.615 4.48 0.00 0.00 3.50
26 27 7.724061 ACACCAGTGAACATTTAGATTAGGTTT 59.276 33.333 4.48 0.00 0.00 3.27
27 28 9.226606 CACCAGTGAACATTTAGATTAGGTTTA 57.773 33.333 0.00 0.00 0.00 2.01
28 29 9.449719 ACCAGTGAACATTTAGATTAGGTTTAG 57.550 33.333 0.00 0.00 0.00 1.85
29 30 9.667107 CCAGTGAACATTTAGATTAGGTTTAGA 57.333 33.333 0.00 0.00 0.00 2.10
33 34 9.582431 TGAACATTTAGATTAGGTTTAGAGTCG 57.418 33.333 0.00 0.00 0.00 4.18
34 35 9.798994 GAACATTTAGATTAGGTTTAGAGTCGA 57.201 33.333 0.00 0.00 0.00 4.20
35 36 9.804758 AACATTTAGATTAGGTTTAGAGTCGAG 57.195 33.333 0.00 0.00 0.00 4.04
36 37 8.968969 ACATTTAGATTAGGTTTAGAGTCGAGT 58.031 33.333 0.00 0.00 0.00 4.18
37 38 9.804758 CATTTAGATTAGGTTTAGAGTCGAGTT 57.195 33.333 0.00 0.00 0.00 3.01
40 41 9.678260 TTAGATTAGGTTTAGAGTCGAGTTAGT 57.322 33.333 0.00 0.00 0.00 2.24
41 42 8.578448 AGATTAGGTTTAGAGTCGAGTTAGTT 57.422 34.615 0.00 0.00 0.00 2.24
42 43 9.678260 AGATTAGGTTTAGAGTCGAGTTAGTTA 57.322 33.333 0.00 0.00 0.00 2.24
53 54 7.914346 AGAGTCGAGTTAGTTAAAATATGTCCG 59.086 37.037 0.00 0.00 0.00 4.79
54 55 7.765307 AGTCGAGTTAGTTAAAATATGTCCGA 58.235 34.615 0.00 0.00 0.00 4.55
55 56 8.246180 AGTCGAGTTAGTTAAAATATGTCCGAA 58.754 33.333 0.00 0.00 0.00 4.30
56 57 9.028185 GTCGAGTTAGTTAAAATATGTCCGAAT 57.972 33.333 0.00 0.00 0.00 3.34
57 58 9.590451 TCGAGTTAGTTAAAATATGTCCGAATT 57.410 29.630 0.00 0.00 0.00 2.17
73 74 8.786826 TGTCCGAATTATAATGGATATGTTCC 57.213 34.615 7.57 0.00 45.69 3.62
92 93 7.102847 TGTTCCGGTTTATATGAAAATTCCC 57.897 36.000 0.00 0.00 0.00 3.97
93 94 6.183360 TGTTCCGGTTTATATGAAAATTCCCG 60.183 38.462 0.00 0.00 0.00 5.14
94 95 5.438833 TCCGGTTTATATGAAAATTCCCGT 58.561 37.500 0.00 0.00 0.00 5.28
95 96 5.297278 TCCGGTTTATATGAAAATTCCCGTG 59.703 40.000 0.00 0.00 0.00 4.94
96 97 5.066764 CCGGTTTATATGAAAATTCCCGTGT 59.933 40.000 0.00 0.00 0.00 4.49
97 98 6.404954 CCGGTTTATATGAAAATTCCCGTGTT 60.405 38.462 0.00 0.00 0.00 3.32
98 99 7.030768 CGGTTTATATGAAAATTCCCGTGTTT 58.969 34.615 0.00 0.00 0.00 2.83
99 100 7.008810 CGGTTTATATGAAAATTCCCGTGTTTG 59.991 37.037 0.00 0.00 0.00 2.93
100 101 7.201487 GGTTTATATGAAAATTCCCGTGTTTGC 60.201 37.037 0.00 0.00 0.00 3.68
101 102 3.742433 ATGAAAATTCCCGTGTTTGCA 57.258 38.095 0.00 0.00 0.00 4.08
102 103 3.742433 TGAAAATTCCCGTGTTTGCAT 57.258 38.095 0.00 0.00 0.00 3.96
103 104 3.388308 TGAAAATTCCCGTGTTTGCATG 58.612 40.909 0.00 0.00 0.00 4.06
104 105 3.068732 TGAAAATTCCCGTGTTTGCATGA 59.931 39.130 0.00 0.00 33.58 3.07
105 106 3.742433 AAATTCCCGTGTTTGCATGAA 57.258 38.095 0.00 0.00 33.58 2.57
106 107 3.959535 AATTCCCGTGTTTGCATGAAT 57.040 38.095 0.00 0.00 33.58 2.57
107 108 3.959535 ATTCCCGTGTTTGCATGAATT 57.040 38.095 0.00 0.00 33.58 2.17
108 109 3.742433 TTCCCGTGTTTGCATGAATTT 57.258 38.095 0.00 0.00 33.58 1.82
109 110 3.296322 TCCCGTGTTTGCATGAATTTC 57.704 42.857 0.00 0.00 33.58 2.17
110 111 2.625314 TCCCGTGTTTGCATGAATTTCA 59.375 40.909 0.75 0.75 33.58 2.69
111 112 3.257873 TCCCGTGTTTGCATGAATTTCAT 59.742 39.130 6.06 6.06 37.65 2.57
112 113 3.613737 CCCGTGTTTGCATGAATTTCATC 59.386 43.478 8.95 5.62 34.28 2.92
113 114 3.613737 CCGTGTTTGCATGAATTTCATCC 59.386 43.478 8.95 0.95 34.28 3.51
114 115 3.301379 CGTGTTTGCATGAATTTCATCCG 59.699 43.478 8.95 1.10 34.28 4.18
115 116 3.613737 GTGTTTGCATGAATTTCATCCGG 59.386 43.478 8.95 0.00 34.28 5.14
116 117 3.257873 TGTTTGCATGAATTTCATCCGGT 59.742 39.130 8.95 0.00 34.28 5.28
117 118 4.244862 GTTTGCATGAATTTCATCCGGTT 58.755 39.130 8.95 0.00 34.28 4.44
118 119 3.507103 TGCATGAATTTCATCCGGTTG 57.493 42.857 8.95 6.15 34.28 3.77
119 120 2.166050 TGCATGAATTTCATCCGGTTGG 59.834 45.455 12.54 0.00 34.28 3.77
128 129 4.424711 TCCGGTTGGATGGCTGGC 62.425 66.667 0.00 0.00 40.17 4.85
129 130 4.431131 CCGGTTGGATGGCTGGCT 62.431 66.667 2.00 0.00 37.49 4.75
130 131 2.825836 CGGTTGGATGGCTGGCTC 60.826 66.667 2.00 0.00 0.00 4.70
131 132 2.825836 GGTTGGATGGCTGGCTCG 60.826 66.667 2.00 0.00 0.00 5.03
132 133 2.045926 GTTGGATGGCTGGCTCGT 60.046 61.111 2.00 0.00 0.00 4.18
133 134 2.046023 TTGGATGGCTGGCTCGTG 60.046 61.111 2.00 0.00 0.00 4.35
134 135 4.783621 TGGATGGCTGGCTCGTGC 62.784 66.667 0.00 0.00 38.76 5.34
135 136 4.783621 GGATGGCTGGCTCGTGCA 62.784 66.667 12.07 0.00 41.91 4.57
136 137 2.515523 GATGGCTGGCTCGTGCAT 60.516 61.111 12.07 0.00 41.91 3.96
137 138 2.044650 ATGGCTGGCTCGTGCATT 60.045 55.556 12.07 0.00 41.91 3.56
138 139 2.056481 GATGGCTGGCTCGTGCATTC 62.056 60.000 12.07 0.00 41.91 2.67
139 140 2.747460 GGCTGGCTCGTGCATTCA 60.747 61.111 12.07 0.00 41.91 2.57
140 141 2.117156 GGCTGGCTCGTGCATTCAT 61.117 57.895 12.07 0.00 41.91 2.57
141 142 1.063649 GCTGGCTCGTGCATTCATG 59.936 57.895 12.07 0.00 41.91 3.07
142 143 1.651240 GCTGGCTCGTGCATTCATGT 61.651 55.000 12.07 0.00 41.91 3.21
143 144 0.376152 CTGGCTCGTGCATTCATGTC 59.624 55.000 12.07 0.00 41.91 3.06
144 145 0.036105 TGGCTCGTGCATTCATGTCT 60.036 50.000 12.07 0.00 41.91 3.41
145 146 0.376152 GGCTCGTGCATTCATGTCTG 59.624 55.000 12.07 0.00 41.91 3.51
146 147 1.081892 GCTCGTGCATTCATGTCTGT 58.918 50.000 4.26 0.00 39.41 3.41
147 148 1.466167 GCTCGTGCATTCATGTCTGTT 59.534 47.619 4.26 0.00 39.41 3.16
148 149 2.672874 GCTCGTGCATTCATGTCTGTTA 59.327 45.455 4.26 0.00 39.41 2.41
149 150 3.242220 GCTCGTGCATTCATGTCTGTTAG 60.242 47.826 4.26 0.00 39.41 2.34
150 151 3.925379 TCGTGCATTCATGTCTGTTAGT 58.075 40.909 0.00 0.00 0.00 2.24
151 152 4.314961 TCGTGCATTCATGTCTGTTAGTT 58.685 39.130 0.00 0.00 0.00 2.24
152 153 4.754618 TCGTGCATTCATGTCTGTTAGTTT 59.245 37.500 0.00 0.00 0.00 2.66
153 154 5.238432 TCGTGCATTCATGTCTGTTAGTTTT 59.762 36.000 0.00 0.00 0.00 2.43
154 155 5.914635 CGTGCATTCATGTCTGTTAGTTTTT 59.085 36.000 0.00 0.00 0.00 1.94
155 156 6.086765 CGTGCATTCATGTCTGTTAGTTTTTC 59.913 38.462 0.00 0.00 0.00 2.29
156 157 6.363357 GTGCATTCATGTCTGTTAGTTTTTCC 59.637 38.462 0.00 0.00 0.00 3.13
157 158 5.569059 GCATTCATGTCTGTTAGTTTTTCCG 59.431 40.000 0.00 0.00 0.00 4.30
158 159 6.567701 GCATTCATGTCTGTTAGTTTTTCCGA 60.568 38.462 0.00 0.00 0.00 4.55
159 160 6.928979 TTCATGTCTGTTAGTTTTTCCGAA 57.071 33.333 0.00 0.00 0.00 4.30
160 161 7.504924 TTCATGTCTGTTAGTTTTTCCGAAT 57.495 32.000 0.00 0.00 0.00 3.34
161 162 6.898041 TCATGTCTGTTAGTTTTTCCGAATG 58.102 36.000 0.00 0.00 0.00 2.67
162 163 5.103290 TGTCTGTTAGTTTTTCCGAATGC 57.897 39.130 0.00 0.00 0.00 3.56
163 164 4.148891 GTCTGTTAGTTTTTCCGAATGCG 58.851 43.478 0.00 0.00 37.24 4.73
179 180 2.084013 GCGGTAGCAAACTTACGGG 58.916 57.895 0.00 0.00 44.35 5.28
180 181 0.671472 GCGGTAGCAAACTTACGGGT 60.671 55.000 0.00 0.00 44.35 5.28
181 182 1.799544 CGGTAGCAAACTTACGGGTT 58.200 50.000 0.00 0.00 0.00 4.11
182 183 2.930455 GCGGTAGCAAACTTACGGGTTA 60.930 50.000 0.00 0.00 44.35 2.85
183 184 2.925563 CGGTAGCAAACTTACGGGTTAG 59.074 50.000 0.00 0.00 0.00 2.34
184 185 2.674852 GGTAGCAAACTTACGGGTTAGC 59.325 50.000 0.00 0.00 0.00 3.09
185 186 1.817357 AGCAAACTTACGGGTTAGCC 58.183 50.000 0.00 0.00 0.00 3.93
186 187 1.350019 AGCAAACTTACGGGTTAGCCT 59.650 47.619 0.00 0.00 34.45 4.58
187 188 1.467342 GCAAACTTACGGGTTAGCCTG 59.533 52.381 2.31 2.31 46.63 4.85
188 189 2.081462 CAAACTTACGGGTTAGCCTGG 58.919 52.381 9.51 0.00 45.50 4.45
189 190 1.648116 AACTTACGGGTTAGCCTGGA 58.352 50.000 9.51 0.00 45.50 3.86
190 191 1.648116 ACTTACGGGTTAGCCTGGAA 58.352 50.000 9.51 5.60 45.50 3.53
192 193 1.941377 TTACGGGTTAGCCTGGAAGA 58.059 50.000 9.51 0.00 45.50 2.87
193 194 2.170012 TACGGGTTAGCCTGGAAGAT 57.830 50.000 9.51 0.00 45.50 2.40
194 195 0.541863 ACGGGTTAGCCTGGAAGATG 59.458 55.000 9.51 0.00 45.50 2.90
195 196 0.815615 CGGGTTAGCCTGGAAGATGC 60.816 60.000 0.00 0.00 37.50 3.91
196 197 0.466372 GGGTTAGCCTGGAAGATGCC 60.466 60.000 0.00 0.00 34.07 4.40
197 198 0.466372 GGTTAGCCTGGAAGATGCCC 60.466 60.000 0.00 0.00 34.07 5.36
198 199 0.548510 GTTAGCCTGGAAGATGCCCT 59.451 55.000 0.00 0.00 34.07 5.19
199 200 1.064389 GTTAGCCTGGAAGATGCCCTT 60.064 52.381 0.00 0.00 37.93 3.95
234 235 5.356575 AGTAGTACCCCTAAACCCTCAAAT 58.643 41.667 0.00 0.00 0.00 2.32
249 250 6.062095 ACCCTCAAATCCTCATAAATAACCG 58.938 40.000 0.00 0.00 0.00 4.44
303 305 4.157668 AGACTAGAACCCCTAAACCCTT 57.842 45.455 0.00 0.00 0.00 3.95
311 313 2.651334 ACCCCTAAACCCTTAAACCCTC 59.349 50.000 0.00 0.00 0.00 4.30
312 314 2.650827 CCCCTAAACCCTTAAACCCTCA 59.349 50.000 0.00 0.00 0.00 3.86
313 315 3.076333 CCCCTAAACCCTTAAACCCTCAA 59.924 47.826 0.00 0.00 0.00 3.02
448 451 4.426313 CCTTCCCAACCTCCCGCC 62.426 72.222 0.00 0.00 0.00 6.13
465 468 2.285668 CTCCTCCCTCCCAAGCCA 60.286 66.667 0.00 0.00 0.00 4.75
1164 1167 2.452105 GTTCTTCGTATCGAGGAGCAC 58.548 52.381 11.52 2.94 42.39 4.40
1169 1172 1.158484 CGTATCGAGGAGCACGGAGA 61.158 60.000 0.00 0.00 0.00 3.71
1387 1399 4.785453 GGCGCCAGGAGGTCCTTG 62.785 72.222 24.80 0.00 46.09 3.61
1466 1893 7.888021 ACAAATCCATCACTAAAATGTACTCCA 59.112 33.333 0.00 0.00 0.00 3.86
1467 1894 7.865706 AATCCATCACTAAAATGTACTCCAC 57.134 36.000 0.00 0.00 0.00 4.02
1468 1895 6.620877 TCCATCACTAAAATGTACTCCACT 57.379 37.500 0.00 0.00 0.00 4.00
1472 1899 6.620877 TCACTAAAATGTACTCCACTCCAT 57.379 37.500 0.00 0.00 0.00 3.41
1473 1900 6.640518 TCACTAAAATGTACTCCACTCCATC 58.359 40.000 0.00 0.00 0.00 3.51
1475 1902 6.536582 CACTAAAATGTACTCCACTCCATCAG 59.463 42.308 0.00 0.00 0.00 2.90
1623 2052 5.692204 CGGTATCTACTGATTCAATGGACAC 59.308 44.000 0.00 0.00 34.49 3.67
1729 2164 8.515414 GCAAAATATTCCTTGGGATCATAGTAC 58.485 37.037 0.00 0.00 0.00 2.73
1763 2198 2.498078 TCAGGTACAATGTGCGGTATCA 59.502 45.455 0.00 0.00 0.00 2.15
1766 2201 2.032030 GGTACAATGTGCGGTATCATGC 60.032 50.000 0.00 0.00 0.00 4.06
1785 2220 1.675483 GCACAGGTTCACATTGTGTCA 59.325 47.619 16.06 2.36 43.08 3.58
1786 2221 2.294233 GCACAGGTTCACATTGTGTCAT 59.706 45.455 16.06 6.42 43.08 3.06
1787 2222 3.610114 GCACAGGTTCACATTGTGTCATC 60.610 47.826 16.06 5.46 43.08 2.92
1829 2264 1.079543 CTACTCGCTGCACAGGCTT 60.080 57.895 0.00 0.00 41.91 4.35
1961 2396 3.502595 GGCAAAGACTAGAACCCTCAAAC 59.497 47.826 0.00 0.00 0.00 2.93
1962 2397 4.134563 GCAAAGACTAGAACCCTCAAACA 58.865 43.478 0.00 0.00 0.00 2.83
1963 2398 4.762251 GCAAAGACTAGAACCCTCAAACAT 59.238 41.667 0.00 0.00 0.00 2.71
1966 2401 7.573283 GCAAAGACTAGAACCCTCAAACATAAC 60.573 40.741 0.00 0.00 0.00 1.89
1974 2409 7.070629 AGAACCCTCAAACATAACCCTTAAAA 58.929 34.615 0.00 0.00 0.00 1.52
1994 2429 6.870895 AAAACAGTTTAAGGGTTGGGTTTA 57.129 33.333 0.00 0.00 0.00 2.01
1996 2431 6.870895 AACAGTTTAAGGGTTGGGTTTAAA 57.129 33.333 0.00 0.00 0.00 1.52
1998 2433 6.196434 ACAGTTTAAGGGTTGGGTTTAAAGA 58.804 36.000 0.00 0.00 29.71 2.52
2001 2436 7.870954 CAGTTTAAGGGTTGGGTTTAAAGATTC 59.129 37.037 0.00 0.00 29.71 2.52
2034 2469 5.364778 CCCCTGTTTTTCAACCCTTAAAAG 58.635 41.667 0.00 0.00 31.02 2.27
2073 2508 5.763698 ACTTCTCAACCCTTAAAACTGCTAC 59.236 40.000 0.00 0.00 0.00 3.58
2113 2548 5.530243 AGGGGTTCTACTAGTAATGCTCTT 58.470 41.667 3.76 0.00 0.00 2.85
2116 2551 6.550481 GGGGTTCTACTAGTAATGCTCTTAGT 59.450 42.308 3.76 0.00 0.00 2.24
2119 2554 8.281893 GGTTCTACTAGTAATGCTCTTAGTACG 58.718 40.741 3.76 0.00 0.00 3.67
2120 2555 8.825745 GTTCTACTAGTAATGCTCTTAGTACGT 58.174 37.037 3.76 0.00 0.00 3.57
2122 2557 9.469807 TCTACTAGTAATGCTCTTAGTACGTAC 57.530 37.037 18.10 18.10 0.00 3.67
2123 2558 7.489574 ACTAGTAATGCTCTTAGTACGTACC 57.510 40.000 21.80 6.29 0.00 3.34
2124 2559 7.050377 ACTAGTAATGCTCTTAGTACGTACCA 58.950 38.462 21.80 11.81 0.00 3.25
2125 2560 6.764308 AGTAATGCTCTTAGTACGTACCAA 57.236 37.500 21.80 13.96 0.00 3.67
2126 2561 6.793349 AGTAATGCTCTTAGTACGTACCAAG 58.207 40.000 22.91 22.91 0.00 3.61
2127 2562 5.656213 AATGCTCTTAGTACGTACCAAGT 57.344 39.130 26.08 11.17 0.00 3.16
2128 2563 4.430137 TGCTCTTAGTACGTACCAAGTG 57.570 45.455 26.08 24.49 0.00 3.16
2129 2564 4.074259 TGCTCTTAGTACGTACCAAGTGA 58.926 43.478 28.17 14.57 0.00 3.41
2130 2565 4.155462 TGCTCTTAGTACGTACCAAGTGAG 59.845 45.833 28.17 21.42 0.00 3.51
2131 2566 4.155644 GCTCTTAGTACGTACCAAGTGAGT 59.844 45.833 28.17 11.24 0.00 3.41
2132 2567 5.335504 GCTCTTAGTACGTACCAAGTGAGTT 60.336 44.000 28.17 10.64 0.00 3.01
2133 2568 6.246420 TCTTAGTACGTACCAAGTGAGTTC 57.754 41.667 26.08 0.00 0.00 3.01
2134 2569 6.000219 TCTTAGTACGTACCAAGTGAGTTCT 59.000 40.000 26.08 7.22 0.00 3.01
2135 2570 4.762956 AGTACGTACCAAGTGAGTTCTC 57.237 45.455 21.80 0.00 0.00 2.87
2136 2571 4.139786 AGTACGTACCAAGTGAGTTCTCA 58.860 43.478 21.80 0.00 0.00 3.27
2137 2572 3.366440 ACGTACCAAGTGAGTTCTCAC 57.634 47.619 21.03 21.03 40.69 3.51
2145 2580 1.889829 AGTGAGTTCTCACTCTTCCGG 59.110 52.381 24.27 0.00 46.96 5.14
2146 2581 2.753507 AGTGAGTTCTCACTCTTCCGGT 60.754 50.000 24.27 5.68 46.96 5.28
2147 2582 2.640346 GAGTTCTCACTCTTCCGGTC 57.360 55.000 0.00 0.00 45.54 4.79
2148 2583 1.887198 GAGTTCTCACTCTTCCGGTCA 59.113 52.381 0.00 0.00 45.54 4.02
2149 2584 2.296471 GAGTTCTCACTCTTCCGGTCAA 59.704 50.000 0.00 0.00 45.54 3.18
2150 2585 2.036089 AGTTCTCACTCTTCCGGTCAAC 59.964 50.000 0.00 0.00 0.00 3.18
2151 2586 1.996798 TCTCACTCTTCCGGTCAACT 58.003 50.000 0.00 0.00 0.00 3.16
2152 2587 2.317040 TCTCACTCTTCCGGTCAACTT 58.683 47.619 0.00 0.00 0.00 2.66
2153 2588 3.493334 TCTCACTCTTCCGGTCAACTTA 58.507 45.455 0.00 0.00 0.00 2.24
2154 2589 3.506455 TCTCACTCTTCCGGTCAACTTAG 59.494 47.826 0.00 0.00 0.00 2.18
2155 2590 3.493334 TCACTCTTCCGGTCAACTTAGA 58.507 45.455 0.00 0.00 0.00 2.10
2156 2591 3.893200 TCACTCTTCCGGTCAACTTAGAA 59.107 43.478 0.00 0.00 0.00 2.10
2157 2592 4.022242 TCACTCTTCCGGTCAACTTAGAAG 60.022 45.833 0.00 0.00 36.19 2.85
2158 2593 3.254892 CTCTTCCGGTCAACTTAGAAGC 58.745 50.000 0.00 0.00 35.11 3.86
2159 2594 2.897969 TCTTCCGGTCAACTTAGAAGCT 59.102 45.455 0.00 0.00 35.11 3.74
2160 2595 2.743636 TCCGGTCAACTTAGAAGCTG 57.256 50.000 0.00 0.00 0.00 4.24
2161 2596 1.968493 TCCGGTCAACTTAGAAGCTGT 59.032 47.619 0.00 0.00 0.00 4.40
2162 2597 2.029290 TCCGGTCAACTTAGAAGCTGTC 60.029 50.000 0.00 0.00 0.00 3.51
2163 2598 1.986378 CGGTCAACTTAGAAGCTGTCG 59.014 52.381 0.00 0.00 0.00 4.35
2164 2599 2.607282 CGGTCAACTTAGAAGCTGTCGT 60.607 50.000 0.00 0.00 0.00 4.34
2165 2600 3.391049 GGTCAACTTAGAAGCTGTCGTT 58.609 45.455 0.00 0.00 0.00 3.85
2166 2601 4.553323 GGTCAACTTAGAAGCTGTCGTTA 58.447 43.478 0.00 0.00 0.00 3.18
2167 2602 4.621886 GGTCAACTTAGAAGCTGTCGTTAG 59.378 45.833 0.00 0.00 0.00 2.34
2168 2603 4.090210 GTCAACTTAGAAGCTGTCGTTAGC 59.910 45.833 5.69 5.69 44.01 3.09
2178 2613 4.815040 GCTGTCGTTAGCTCTAGATACA 57.185 45.455 0.00 0.00 40.52 2.29
2179 2614 5.171147 GCTGTCGTTAGCTCTAGATACAA 57.829 43.478 0.00 0.00 40.52 2.41
2180 2615 5.209240 GCTGTCGTTAGCTCTAGATACAAG 58.791 45.833 0.00 0.00 40.52 3.16
2181 2616 5.220892 GCTGTCGTTAGCTCTAGATACAAGT 60.221 44.000 0.00 0.00 40.52 3.16
2182 2617 6.018098 GCTGTCGTTAGCTCTAGATACAAGTA 60.018 42.308 0.00 0.00 40.52 2.24
2183 2618 7.466996 GCTGTCGTTAGCTCTAGATACAAGTAA 60.467 40.741 0.00 0.00 40.52 2.24
2184 2619 7.917597 TGTCGTTAGCTCTAGATACAAGTAAG 58.082 38.462 0.00 0.00 0.00 2.34
2185 2620 7.012138 TGTCGTTAGCTCTAGATACAAGTAAGG 59.988 40.741 0.00 0.00 0.00 2.69
2186 2621 7.012232 GTCGTTAGCTCTAGATACAAGTAAGGT 59.988 40.741 0.00 0.00 0.00 3.50
2187 2622 7.226325 TCGTTAGCTCTAGATACAAGTAAGGTC 59.774 40.741 0.00 0.00 0.00 3.85
2188 2623 7.012138 CGTTAGCTCTAGATACAAGTAAGGTCA 59.988 40.741 0.00 0.00 0.00 4.02
2189 2624 8.684520 GTTAGCTCTAGATACAAGTAAGGTCAA 58.315 37.037 0.00 0.00 0.00 3.18
2190 2625 7.719871 AGCTCTAGATACAAGTAAGGTCAAA 57.280 36.000 0.00 0.00 0.00 2.69
2191 2626 7.548967 AGCTCTAGATACAAGTAAGGTCAAAC 58.451 38.462 0.00 0.00 0.00 2.93
2192 2627 7.397761 AGCTCTAGATACAAGTAAGGTCAAACT 59.602 37.037 0.00 0.00 0.00 2.66
2193 2628 8.035984 GCTCTAGATACAAGTAAGGTCAAACTT 58.964 37.037 0.00 0.00 36.38 2.66
2194 2629 9.930693 CTCTAGATACAAGTAAGGTCAAACTTT 57.069 33.333 0.00 0.00 33.72 2.66
2195 2630 9.924650 TCTAGATACAAGTAAGGTCAAACTTTC 57.075 33.333 0.00 0.00 33.72 2.62
2196 2631 9.706691 CTAGATACAAGTAAGGTCAAACTTTCA 57.293 33.333 0.00 0.00 33.72 2.69
2197 2632 8.974060 AGATACAAGTAAGGTCAAACTTTCAA 57.026 30.769 0.00 0.00 33.72 2.69
2198 2633 9.403583 AGATACAAGTAAGGTCAAACTTTCAAA 57.596 29.630 0.00 0.00 33.72 2.69
2199 2634 9.447040 GATACAAGTAAGGTCAAACTTTCAAAC 57.553 33.333 0.00 0.00 33.72 2.93
2200 2635 6.627243 ACAAGTAAGGTCAAACTTTCAAACC 58.373 36.000 0.00 0.00 33.72 3.27
2201 2636 6.436218 ACAAGTAAGGTCAAACTTTCAAACCT 59.564 34.615 0.00 0.00 42.08 3.50
2202 2637 6.451064 AGTAAGGTCAAACTTTCAAACCTG 57.549 37.500 0.00 0.00 40.19 4.00
2203 2638 5.949952 AGTAAGGTCAAACTTTCAAACCTGT 59.050 36.000 0.00 0.00 40.19 4.00
2204 2639 5.738619 AAGGTCAAACTTTCAAACCTGTT 57.261 34.783 0.00 0.00 40.19 3.16
2205 2640 5.072040 AGGTCAAACTTTCAAACCTGTTG 57.928 39.130 0.00 0.00 38.88 3.33
2206 2641 4.770010 AGGTCAAACTTTCAAACCTGTTGA 59.230 37.500 0.00 0.00 38.88 3.18
2207 2642 4.862574 GGTCAAACTTTCAAACCTGTTGAC 59.137 41.667 0.00 0.00 0.00 3.18
2208 2643 5.336451 GGTCAAACTTTCAAACCTGTTGACT 60.336 40.000 11.96 0.00 0.00 3.41
2209 2644 6.127842 GGTCAAACTTTCAAACCTGTTGACTA 60.128 38.462 11.96 0.00 0.00 2.59
2210 2645 6.745907 GTCAAACTTTCAAACCTGTTGACTAC 59.254 38.462 6.42 0.00 0.00 2.73
2211 2646 6.657541 TCAAACTTTCAAACCTGTTGACTACT 59.342 34.615 0.00 0.00 0.00 2.57
2212 2647 6.436843 AACTTTCAAACCTGTTGACTACTG 57.563 37.500 0.00 0.00 0.00 2.74
2213 2648 5.741011 ACTTTCAAACCTGTTGACTACTGA 58.259 37.500 0.00 0.00 0.00 3.41
2214 2649 6.357367 ACTTTCAAACCTGTTGACTACTGAT 58.643 36.000 0.00 0.00 0.00 2.90
2215 2650 7.506114 ACTTTCAAACCTGTTGACTACTGATA 58.494 34.615 0.00 0.00 0.00 2.15
2216 2651 8.157476 ACTTTCAAACCTGTTGACTACTGATAT 58.843 33.333 0.00 0.00 0.00 1.63
2217 2652 8.918202 TTTCAAACCTGTTGACTACTGATATT 57.082 30.769 0.00 0.00 0.00 1.28
2289 2724 7.886629 ATGGTGCATAATCTATGTCAAAAGT 57.113 32.000 0.00 0.00 38.43 2.66
2290 2725 8.978874 ATGGTGCATAATCTATGTCAAAAGTA 57.021 30.769 0.00 0.00 38.43 2.24
2291 2726 8.978874 TGGTGCATAATCTATGTCAAAAGTAT 57.021 30.769 0.00 0.00 38.43 2.12
2292 2727 9.407380 TGGTGCATAATCTATGTCAAAAGTATT 57.593 29.630 0.00 0.00 38.43 1.89
2296 2731 9.599322 GCATAATCTATGTCAAAAGTATTTCCG 57.401 33.333 0.00 0.00 36.42 4.30
2297 2732 9.599322 CATAATCTATGTCAAAAGTATTTCCGC 57.401 33.333 0.00 0.00 37.28 5.54
2298 2733 7.624360 AATCTATGTCAAAAGTATTTCCGCA 57.376 32.000 0.00 0.00 37.28 5.69
2299 2734 7.624360 ATCTATGTCAAAAGTATTTCCGCAA 57.376 32.000 0.00 0.00 37.28 4.85
2300 2735 7.624360 TCTATGTCAAAAGTATTTCCGCAAT 57.376 32.000 0.00 0.00 37.28 3.56
2301 2736 8.725405 TCTATGTCAAAAGTATTTCCGCAATA 57.275 30.769 0.00 0.00 37.28 1.90
2302 2737 9.337396 TCTATGTCAAAAGTATTTCCGCAATAT 57.663 29.630 0.00 0.00 37.28 1.28
2303 2738 9.385902 CTATGTCAAAAGTATTTCCGCAATATG 57.614 33.333 0.00 0.00 37.28 1.78
2304 2739 7.151999 TGTCAAAAGTATTTCCGCAATATGT 57.848 32.000 0.00 0.00 37.28 2.29
2305 2740 8.270080 TGTCAAAAGTATTTCCGCAATATGTA 57.730 30.769 0.00 0.00 37.28 2.29
2306 2741 8.898761 TGTCAAAAGTATTTCCGCAATATGTAT 58.101 29.630 0.00 0.00 37.28 2.29
2307 2742 9.730420 GTCAAAAGTATTTCCGCAATATGTATT 57.270 29.630 0.00 0.00 37.28 1.89
2312 2747 9.561069 AAGTATTTCCGCAATATGTATTTCTCT 57.439 29.630 0.00 0.00 29.70 3.10
2313 2748 9.561069 AGTATTTCCGCAATATGTATTTCTCTT 57.439 29.630 0.00 0.00 29.70 2.85
2317 2752 8.958119 TTCCGCAATATGTATTTCTCTTAAGT 57.042 30.769 1.63 0.00 0.00 2.24
2318 2753 8.958119 TCCGCAATATGTATTTCTCTTAAGTT 57.042 30.769 1.63 0.00 0.00 2.66
2319 2754 8.826710 TCCGCAATATGTATTTCTCTTAAGTTG 58.173 33.333 1.63 0.00 0.00 3.16
2320 2755 8.612619 CCGCAATATGTATTTCTCTTAAGTTGT 58.387 33.333 1.63 0.00 0.00 3.32
2321 2756 9.425893 CGCAATATGTATTTCTCTTAAGTTGTG 57.574 33.333 1.63 0.00 0.00 3.33
2328 2763 9.710979 TGTATTTCTCTTAAGTTGTGTTTTTCG 57.289 29.630 1.63 0.00 0.00 3.46
2329 2764 9.925268 GTATTTCTCTTAAGTTGTGTTTTTCGA 57.075 29.630 1.63 0.00 0.00 3.71
2330 2765 8.836959 ATTTCTCTTAAGTTGTGTTTTTCGAC 57.163 30.769 1.63 0.00 0.00 4.20
2331 2766 6.354039 TCTCTTAAGTTGTGTTTTTCGACC 57.646 37.500 1.63 0.00 0.00 4.79
2332 2767 5.875910 TCTCTTAAGTTGTGTTTTTCGACCA 59.124 36.000 1.63 0.00 0.00 4.02
2333 2768 6.540914 TCTCTTAAGTTGTGTTTTTCGACCAT 59.459 34.615 1.63 0.00 0.00 3.55
2334 2769 7.066525 TCTCTTAAGTTGTGTTTTTCGACCATT 59.933 33.333 1.63 0.00 0.00 3.16
2335 2770 7.540299 TCTTAAGTTGTGTTTTTCGACCATTT 58.460 30.769 1.63 0.00 0.00 2.32
2336 2771 8.030106 TCTTAAGTTGTGTTTTTCGACCATTTT 58.970 29.630 1.63 0.00 0.00 1.82
2337 2772 6.401955 AAGTTGTGTTTTTCGACCATTTTG 57.598 33.333 0.00 0.00 0.00 2.44
2338 2773 5.715070 AGTTGTGTTTTTCGACCATTTTGA 58.285 33.333 0.00 0.00 0.00 2.69
2339 2774 6.159988 AGTTGTGTTTTTCGACCATTTTGAA 58.840 32.000 0.00 0.00 0.00 2.69
2340 2775 6.090223 AGTTGTGTTTTTCGACCATTTTGAAC 59.910 34.615 0.00 0.00 0.00 3.18
2341 2776 5.715070 TGTGTTTTTCGACCATTTTGAACT 58.285 33.333 0.00 0.00 0.00 3.01
2342 2777 6.853720 TGTGTTTTTCGACCATTTTGAACTA 58.146 32.000 0.00 0.00 0.00 2.24
2343 2778 7.484975 TGTGTTTTTCGACCATTTTGAACTAT 58.515 30.769 0.00 0.00 0.00 2.12
2344 2779 7.433719 TGTGTTTTTCGACCATTTTGAACTATG 59.566 33.333 0.00 0.00 0.00 2.23
2345 2780 6.920758 TGTTTTTCGACCATTTTGAACTATGG 59.079 34.615 0.00 0.00 45.49 2.74
2346 2781 6.885952 TTTTCGACCATTTTGAACTATGGA 57.114 33.333 11.28 0.00 43.25 3.41
2347 2782 7.461182 TTTTCGACCATTTTGAACTATGGAT 57.539 32.000 11.28 0.00 43.25 3.41
2348 2783 6.435430 TTCGACCATTTTGAACTATGGATG 57.565 37.500 11.28 4.72 43.25 3.51
2349 2784 4.335315 TCGACCATTTTGAACTATGGATGC 59.665 41.667 11.28 2.06 43.25 3.91
2350 2785 4.336433 CGACCATTTTGAACTATGGATGCT 59.664 41.667 11.28 0.00 43.25 3.79
2351 2786 5.163622 CGACCATTTTGAACTATGGATGCTT 60.164 40.000 11.28 0.00 43.25 3.91
2352 2787 6.038161 CGACCATTTTGAACTATGGATGCTTA 59.962 38.462 11.28 0.00 43.25 3.09
2353 2788 7.415095 CGACCATTTTGAACTATGGATGCTTAA 60.415 37.037 11.28 0.00 43.25 1.85
2354 2789 8.133024 ACCATTTTGAACTATGGATGCTTAAA 57.867 30.769 11.28 0.00 43.25 1.52
2355 2790 8.761689 ACCATTTTGAACTATGGATGCTTAAAT 58.238 29.630 11.28 0.00 43.25 1.40
2356 2791 9.037737 CCATTTTGAACTATGGATGCTTAAATG 57.962 33.333 0.00 0.00 43.25 2.32
2357 2792 9.806203 CATTTTGAACTATGGATGCTTAAATGA 57.194 29.630 0.00 0.00 33.41 2.57
2358 2793 9.807649 ATTTTGAACTATGGATGCTTAAATGAC 57.192 29.630 0.00 0.00 0.00 3.06
2359 2794 7.936496 TTGAACTATGGATGCTTAAATGACA 57.064 32.000 0.00 0.00 0.00 3.58
2360 2795 8.523915 TTGAACTATGGATGCTTAAATGACAT 57.476 30.769 0.00 0.00 0.00 3.06
2361 2796 9.625747 TTGAACTATGGATGCTTAAATGACATA 57.374 29.630 0.00 0.00 0.00 2.29
2362 2797 9.797642 TGAACTATGGATGCTTAAATGACATAT 57.202 29.630 0.00 0.00 0.00 1.78
2372 2807 8.903570 TGCTTAAATGACATATTTTACAACGG 57.096 30.769 0.00 0.00 0.00 4.44
2373 2808 8.516234 TGCTTAAATGACATATTTTACAACGGT 58.484 29.630 0.00 0.00 0.00 4.83
2374 2809 9.349145 GCTTAAATGACATATTTTACAACGGTT 57.651 29.630 0.00 0.00 0.00 4.44
2379 2814 9.535878 AATGACATATTTTACAACGGTTTTTGT 57.464 25.926 0.00 0.00 42.46 2.83
2380 2815 8.928270 TGACATATTTTACAACGGTTTTTGTT 57.072 26.923 0.00 0.00 40.29 2.83
2386 2821 7.578169 TTTTACAACGGTTTTTGTTAGTTGG 57.422 32.000 10.68 0.00 44.38 3.77
2387 2822 4.787260 ACAACGGTTTTTGTTAGTTGGT 57.213 36.364 10.68 0.00 44.38 3.67
2388 2823 5.136816 ACAACGGTTTTTGTTAGTTGGTT 57.863 34.783 10.68 0.00 44.38 3.67
2389 2824 6.264841 ACAACGGTTTTTGTTAGTTGGTTA 57.735 33.333 10.68 0.00 44.38 2.85
2390 2825 6.324042 ACAACGGTTTTTGTTAGTTGGTTAG 58.676 36.000 10.68 0.00 44.38 2.34
2391 2826 4.923893 ACGGTTTTTGTTAGTTGGTTAGC 58.076 39.130 0.00 0.00 0.00 3.09
2392 2827 4.202040 ACGGTTTTTGTTAGTTGGTTAGCC 60.202 41.667 0.00 0.00 0.00 3.93
2393 2828 4.202030 CGGTTTTTGTTAGTTGGTTAGCCA 60.202 41.667 0.00 0.00 44.38 4.75
2394 2829 5.045215 GGTTTTTGTTAGTTGGTTAGCCAC 58.955 41.667 0.00 0.00 46.01 5.01
2395 2830 5.394333 GGTTTTTGTTAGTTGGTTAGCCACA 60.394 40.000 0.00 0.00 46.01 4.17
2396 2831 5.508200 TTTTGTTAGTTGGTTAGCCACAG 57.492 39.130 0.00 0.00 46.01 3.66
2397 2832 2.500229 TGTTAGTTGGTTAGCCACAGC 58.500 47.619 0.00 0.00 46.01 4.40
2413 2848 3.930336 CACAGCTCAGTGGACATTAAGA 58.070 45.455 0.00 0.00 35.88 2.10
2414 2849 4.318332 CACAGCTCAGTGGACATTAAGAA 58.682 43.478 0.00 0.00 35.88 2.52
2415 2850 4.756642 CACAGCTCAGTGGACATTAAGAAA 59.243 41.667 0.00 0.00 35.88 2.52
2416 2851 4.757149 ACAGCTCAGTGGACATTAAGAAAC 59.243 41.667 0.00 0.00 0.00 2.78
2417 2852 4.756642 CAGCTCAGTGGACATTAAGAAACA 59.243 41.667 0.00 0.00 0.00 2.83
2418 2853 5.413833 CAGCTCAGTGGACATTAAGAAACAT 59.586 40.000 0.00 0.00 0.00 2.71
2419 2854 5.645497 AGCTCAGTGGACATTAAGAAACATC 59.355 40.000 0.00 0.00 0.00 3.06
2420 2855 5.412594 GCTCAGTGGACATTAAGAAACATCA 59.587 40.000 0.00 0.00 0.00 3.07
2421 2856 6.094603 GCTCAGTGGACATTAAGAAACATCAT 59.905 38.462 0.00 0.00 0.00 2.45
2422 2857 7.362401 GCTCAGTGGACATTAAGAAACATCATT 60.362 37.037 0.00 0.00 0.00 2.57
2423 2858 7.819644 TCAGTGGACATTAAGAAACATCATTG 58.180 34.615 0.00 0.00 0.00 2.82
2424 2859 7.031372 CAGTGGACATTAAGAAACATCATTGG 58.969 38.462 0.00 0.00 0.00 3.16
2425 2860 6.153340 AGTGGACATTAAGAAACATCATTGGG 59.847 38.462 0.00 0.00 0.00 4.12
2426 2861 6.152661 GTGGACATTAAGAAACATCATTGGGA 59.847 38.462 0.00 0.00 0.00 4.37
2427 2862 6.377996 TGGACATTAAGAAACATCATTGGGAG 59.622 38.462 0.00 0.00 0.00 4.30
2428 2863 6.603201 GGACATTAAGAAACATCATTGGGAGA 59.397 38.462 0.00 0.00 0.00 3.71
2429 2864 7.122650 GGACATTAAGAAACATCATTGGGAGAA 59.877 37.037 0.00 0.00 0.00 2.87
2430 2865 8.599624 ACATTAAGAAACATCATTGGGAGAAT 57.400 30.769 0.00 0.00 0.00 2.40
2431 2866 9.699410 ACATTAAGAAACATCATTGGGAGAATA 57.301 29.630 0.00 0.00 0.00 1.75
2436 2871 8.015185 AGAAACATCATTGGGAGAATATTTGG 57.985 34.615 0.00 0.00 0.00 3.28
2437 2872 6.736110 AACATCATTGGGAGAATATTTGGG 57.264 37.500 0.00 0.00 0.00 4.12
2438 2873 5.149976 ACATCATTGGGAGAATATTTGGGG 58.850 41.667 0.00 0.00 0.00 4.96
2439 2874 3.575805 TCATTGGGAGAATATTTGGGGC 58.424 45.455 0.00 0.00 0.00 5.80
2440 2875 3.052262 TCATTGGGAGAATATTTGGGGCA 60.052 43.478 0.00 0.00 0.00 5.36
2441 2876 2.452600 TGGGAGAATATTTGGGGCAC 57.547 50.000 0.00 0.00 0.00 5.01
2442 2877 1.318576 GGGAGAATATTTGGGGCACG 58.681 55.000 0.00 0.00 0.00 5.34
2443 2878 1.409661 GGGAGAATATTTGGGGCACGT 60.410 52.381 0.00 0.00 0.00 4.49
2444 2879 2.158726 GGGAGAATATTTGGGGCACGTA 60.159 50.000 0.00 0.00 0.00 3.57
2445 2880 3.547746 GGAGAATATTTGGGGCACGTAA 58.452 45.455 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.779860 ACCTAATCTAAATGTTCACTGGTGT 58.220 36.000 0.53 0.00 0.00 4.16
1 2 7.687941 AACCTAATCTAAATGTTCACTGGTG 57.312 36.000 0.00 0.00 0.00 4.17
2 3 9.449719 CTAAACCTAATCTAAATGTTCACTGGT 57.550 33.333 0.00 0.00 0.00 4.00
3 4 9.667107 TCTAAACCTAATCTAAATGTTCACTGG 57.333 33.333 0.00 0.00 0.00 4.00
7 8 9.582431 CGACTCTAAACCTAATCTAAATGTTCA 57.418 33.333 0.00 0.00 0.00 3.18
8 9 9.798994 TCGACTCTAAACCTAATCTAAATGTTC 57.201 33.333 0.00 0.00 0.00 3.18
9 10 9.804758 CTCGACTCTAAACCTAATCTAAATGTT 57.195 33.333 0.00 0.00 0.00 2.71
10 11 8.968969 ACTCGACTCTAAACCTAATCTAAATGT 58.031 33.333 0.00 0.00 0.00 2.71
11 12 9.804758 AACTCGACTCTAAACCTAATCTAAATG 57.195 33.333 0.00 0.00 0.00 2.32
14 15 9.678260 ACTAACTCGACTCTAAACCTAATCTAA 57.322 33.333 0.00 0.00 0.00 2.10
15 16 9.678260 AACTAACTCGACTCTAAACCTAATCTA 57.322 33.333 0.00 0.00 0.00 1.98
16 17 8.578448 AACTAACTCGACTCTAAACCTAATCT 57.422 34.615 0.00 0.00 0.00 2.40
27 28 7.914346 CGGACATATTTTAACTAACTCGACTCT 59.086 37.037 0.00 0.00 0.00 3.24
28 29 7.912250 TCGGACATATTTTAACTAACTCGACTC 59.088 37.037 0.00 0.00 0.00 3.36
29 30 7.765307 TCGGACATATTTTAACTAACTCGACT 58.235 34.615 0.00 0.00 0.00 4.18
30 31 7.975866 TCGGACATATTTTAACTAACTCGAC 57.024 36.000 0.00 0.00 0.00 4.20
31 32 9.590451 AATTCGGACATATTTTAACTAACTCGA 57.410 29.630 0.00 0.00 0.00 4.04
66 67 8.852135 GGGAATTTTCATATAAACCGGAACATA 58.148 33.333 9.46 1.94 0.00 2.29
67 68 7.469456 CGGGAATTTTCATATAAACCGGAACAT 60.469 37.037 9.46 0.00 35.50 2.71
68 69 6.183360 CGGGAATTTTCATATAAACCGGAACA 60.183 38.462 9.46 0.00 35.50 3.18
69 70 6.183360 ACGGGAATTTTCATATAAACCGGAAC 60.183 38.462 9.46 0.00 42.75 3.62
70 71 5.887035 ACGGGAATTTTCATATAAACCGGAA 59.113 36.000 9.46 0.00 42.75 4.30
71 72 5.297278 CACGGGAATTTTCATATAAACCGGA 59.703 40.000 9.46 0.00 42.75 5.14
72 73 5.066764 ACACGGGAATTTTCATATAAACCGG 59.933 40.000 0.00 0.00 42.75 5.28
73 74 6.126568 ACACGGGAATTTTCATATAAACCG 57.873 37.500 0.00 0.00 43.93 4.44
74 75 7.201487 GCAAACACGGGAATTTTCATATAAACC 60.201 37.037 0.00 0.00 0.00 3.27
75 76 7.329717 TGCAAACACGGGAATTTTCATATAAAC 59.670 33.333 0.00 0.00 0.00 2.01
76 77 7.378966 TGCAAACACGGGAATTTTCATATAAA 58.621 30.769 0.00 0.00 0.00 1.40
77 78 6.925211 TGCAAACACGGGAATTTTCATATAA 58.075 32.000 0.00 0.00 0.00 0.98
78 79 6.516739 TGCAAACACGGGAATTTTCATATA 57.483 33.333 0.00 0.00 0.00 0.86
79 80 5.398603 TGCAAACACGGGAATTTTCATAT 57.601 34.783 0.00 0.00 0.00 1.78
80 81 4.855715 TGCAAACACGGGAATTTTCATA 57.144 36.364 0.00 0.00 0.00 2.15
81 82 3.742433 TGCAAACACGGGAATTTTCAT 57.258 38.095 0.00 0.00 0.00 2.57
82 83 3.068732 TCATGCAAACACGGGAATTTTCA 59.931 39.130 0.00 0.00 0.00 2.69
83 84 3.648009 TCATGCAAACACGGGAATTTTC 58.352 40.909 0.00 0.00 0.00 2.29
84 85 3.742433 TCATGCAAACACGGGAATTTT 57.258 38.095 0.00 0.00 0.00 1.82
85 86 3.742433 TTCATGCAAACACGGGAATTT 57.258 38.095 0.00 0.00 0.00 1.82
86 87 3.959535 ATTCATGCAAACACGGGAATT 57.040 38.095 0.00 0.00 0.00 2.17
87 88 3.959535 AATTCATGCAAACACGGGAAT 57.040 38.095 0.00 0.00 0.00 3.01
88 89 3.068732 TGAAATTCATGCAAACACGGGAA 59.931 39.130 0.00 0.00 0.00 3.97
89 90 2.625314 TGAAATTCATGCAAACACGGGA 59.375 40.909 0.00 0.00 0.00 5.14
90 91 3.023946 TGAAATTCATGCAAACACGGG 57.976 42.857 0.00 0.00 0.00 5.28
91 92 3.613737 GGATGAAATTCATGCAAACACGG 59.386 43.478 20.18 0.00 43.55 4.94
92 93 3.301379 CGGATGAAATTCATGCAAACACG 59.699 43.478 23.55 5.98 44.18 4.49
93 94 3.613737 CCGGATGAAATTCATGCAAACAC 59.386 43.478 23.55 4.52 44.18 3.32
94 95 3.257873 ACCGGATGAAATTCATGCAAACA 59.742 39.130 23.55 0.00 44.18 2.83
95 96 3.848726 ACCGGATGAAATTCATGCAAAC 58.151 40.909 23.55 5.81 44.18 2.93
96 97 4.244066 CAACCGGATGAAATTCATGCAAA 58.756 39.130 23.55 0.00 44.18 3.68
97 98 3.368220 CCAACCGGATGAAATTCATGCAA 60.368 43.478 23.55 0.00 44.18 4.08
98 99 2.166050 CCAACCGGATGAAATTCATGCA 59.834 45.455 23.55 0.00 44.18 3.96
99 100 2.426738 TCCAACCGGATGAAATTCATGC 59.573 45.455 13.82 15.08 41.12 4.06
112 113 4.431131 AGCCAGCCATCCAACCGG 62.431 66.667 0.00 0.00 0.00 5.28
113 114 2.825836 GAGCCAGCCATCCAACCG 60.826 66.667 0.00 0.00 0.00 4.44
114 115 2.825836 CGAGCCAGCCATCCAACC 60.826 66.667 0.00 0.00 0.00 3.77
115 116 2.045926 ACGAGCCAGCCATCCAAC 60.046 61.111 0.00 0.00 0.00 3.77
116 117 2.046023 CACGAGCCAGCCATCCAA 60.046 61.111 0.00 0.00 0.00 3.53
117 118 4.783621 GCACGAGCCAGCCATCCA 62.784 66.667 0.00 0.00 33.58 3.41
118 119 4.783621 TGCACGAGCCAGCCATCC 62.784 66.667 1.39 0.00 41.13 3.51
119 120 2.056481 GAATGCACGAGCCAGCCATC 62.056 60.000 1.39 0.00 41.13 3.51
120 121 2.044650 AATGCACGAGCCAGCCAT 60.045 55.556 1.39 0.00 41.13 4.40
121 122 2.747460 GAATGCACGAGCCAGCCA 60.747 61.111 1.39 0.00 41.13 4.75
122 123 2.117156 ATGAATGCACGAGCCAGCC 61.117 57.895 1.39 0.00 41.13 4.85
123 124 1.063649 CATGAATGCACGAGCCAGC 59.936 57.895 1.39 0.00 41.13 4.85
124 125 0.376152 GACATGAATGCACGAGCCAG 59.624 55.000 0.00 0.00 41.13 4.85
125 126 0.036105 AGACATGAATGCACGAGCCA 60.036 50.000 0.00 0.00 41.13 4.75
126 127 0.376152 CAGACATGAATGCACGAGCC 59.624 55.000 0.00 0.00 41.13 4.70
127 128 1.081892 ACAGACATGAATGCACGAGC 58.918 50.000 0.00 0.00 42.57 5.03
128 129 3.928992 ACTAACAGACATGAATGCACGAG 59.071 43.478 0.00 0.00 0.00 4.18
129 130 3.925379 ACTAACAGACATGAATGCACGA 58.075 40.909 0.00 0.00 0.00 4.35
130 131 4.668576 AACTAACAGACATGAATGCACG 57.331 40.909 0.00 0.00 0.00 5.34
131 132 6.363357 GGAAAAACTAACAGACATGAATGCAC 59.637 38.462 0.00 0.00 0.00 4.57
132 133 6.446318 GGAAAAACTAACAGACATGAATGCA 58.554 36.000 0.00 0.00 0.00 3.96
133 134 5.569059 CGGAAAAACTAACAGACATGAATGC 59.431 40.000 0.00 0.00 0.00 3.56
134 135 6.898041 TCGGAAAAACTAACAGACATGAATG 58.102 36.000 0.00 0.00 0.00 2.67
135 136 7.504924 TTCGGAAAAACTAACAGACATGAAT 57.495 32.000 0.00 0.00 0.00 2.57
136 137 6.928979 TTCGGAAAAACTAACAGACATGAA 57.071 33.333 0.00 0.00 0.00 2.57
137 138 6.567701 GCATTCGGAAAAACTAACAGACATGA 60.568 38.462 0.00 0.00 0.00 3.07
138 139 5.569059 GCATTCGGAAAAACTAACAGACATG 59.431 40.000 0.00 0.00 0.00 3.21
139 140 5.616866 CGCATTCGGAAAAACTAACAGACAT 60.617 40.000 0.00 0.00 0.00 3.06
140 141 4.319190 CGCATTCGGAAAAACTAACAGACA 60.319 41.667 0.00 0.00 0.00 3.41
141 142 4.148891 CGCATTCGGAAAAACTAACAGAC 58.851 43.478 0.00 0.00 0.00 3.51
142 143 4.398549 CGCATTCGGAAAAACTAACAGA 57.601 40.909 0.00 0.00 0.00 3.41
160 161 0.671163 CCCGTAAGTTTGCTACCGCA 60.671 55.000 0.00 0.00 46.24 5.69
161 162 0.671472 ACCCGTAAGTTTGCTACCGC 60.671 55.000 0.00 0.00 0.00 5.68
162 163 1.799544 AACCCGTAAGTTTGCTACCG 58.200 50.000 0.00 0.00 0.00 4.02
163 164 2.674852 GCTAACCCGTAAGTTTGCTACC 59.325 50.000 8.58 0.00 42.68 3.18
164 165 2.674852 GGCTAACCCGTAAGTTTGCTAC 59.325 50.000 13.24 0.00 44.50 3.58
165 166 2.568509 AGGCTAACCCGTAAGTTTGCTA 59.431 45.455 13.24 0.00 44.50 3.49
166 167 1.350019 AGGCTAACCCGTAAGTTTGCT 59.650 47.619 13.24 2.04 44.50 3.91
167 168 1.467342 CAGGCTAACCCGTAAGTTTGC 59.533 52.381 7.69 7.69 44.41 3.68
168 169 2.081462 CCAGGCTAACCCGTAAGTTTG 58.919 52.381 0.00 0.00 39.21 2.93
169 170 1.980036 TCCAGGCTAACCCGTAAGTTT 59.020 47.619 0.00 0.00 39.21 2.66
170 171 1.648116 TCCAGGCTAACCCGTAAGTT 58.352 50.000 0.00 0.00 39.21 2.66
171 172 1.553704 CTTCCAGGCTAACCCGTAAGT 59.446 52.381 0.00 0.00 39.21 2.24
172 173 1.829222 TCTTCCAGGCTAACCCGTAAG 59.171 52.381 0.00 0.00 39.21 2.34
173 174 1.941377 TCTTCCAGGCTAACCCGTAA 58.059 50.000 0.00 0.00 39.21 3.18
174 175 1.760613 CATCTTCCAGGCTAACCCGTA 59.239 52.381 0.00 0.00 39.21 4.02
175 176 0.541863 CATCTTCCAGGCTAACCCGT 59.458 55.000 0.00 0.00 39.21 5.28
176 177 0.815615 GCATCTTCCAGGCTAACCCG 60.816 60.000 0.00 0.00 39.21 5.28
177 178 0.466372 GGCATCTTCCAGGCTAACCC 60.466 60.000 0.00 0.00 36.11 4.11
178 179 0.466372 GGGCATCTTCCAGGCTAACC 60.466 60.000 0.00 0.00 0.00 2.85
179 180 0.548510 AGGGCATCTTCCAGGCTAAC 59.451 55.000 0.00 0.00 0.00 2.34
180 181 1.298953 AAGGGCATCTTCCAGGCTAA 58.701 50.000 0.00 0.00 0.00 3.09
181 182 2.050144 CTAAGGGCATCTTCCAGGCTA 58.950 52.381 0.00 0.00 36.93 3.93
182 183 0.842635 CTAAGGGCATCTTCCAGGCT 59.157 55.000 0.00 0.00 36.93 4.58
183 184 0.839946 TCTAAGGGCATCTTCCAGGC 59.160 55.000 0.00 0.00 36.93 4.85
184 185 1.202746 GCTCTAAGGGCATCTTCCAGG 60.203 57.143 0.00 0.00 36.93 4.45
185 186 1.487976 TGCTCTAAGGGCATCTTCCAG 59.512 52.381 0.00 0.00 36.93 3.86
186 187 1.583556 TGCTCTAAGGGCATCTTCCA 58.416 50.000 0.00 0.00 36.93 3.53
187 188 2.947127 ATGCTCTAAGGGCATCTTCC 57.053 50.000 2.14 0.00 45.85 3.46
193 194 5.455872 ACTACTAGTAATGCTCTAAGGGCA 58.544 41.667 3.76 0.00 44.05 5.36
194 195 6.072008 GGTACTACTAGTAATGCTCTAAGGGC 60.072 46.154 3.76 0.00 31.62 5.19
195 196 6.433716 GGGTACTACTAGTAATGCTCTAAGGG 59.566 46.154 3.76 0.00 31.62 3.95
196 197 6.433716 GGGGTACTACTAGTAATGCTCTAAGG 59.566 46.154 3.76 0.00 31.62 2.69
197 198 7.232910 AGGGGTACTACTAGTAATGCTCTAAG 58.767 42.308 3.76 0.00 31.62 2.18
198 199 7.159201 AGGGGTACTACTAGTAATGCTCTAA 57.841 40.000 3.76 0.00 31.62 2.10
199 200 6.776887 AGGGGTACTACTAGTAATGCTCTA 57.223 41.667 3.76 0.00 31.62 2.43
276 278 1.349067 AGGGGTTCTAGTCTTTGCGT 58.651 50.000 0.00 0.00 0.00 5.24
433 435 3.327404 GAGGCGGGAGGTTGGGAA 61.327 66.667 0.00 0.00 0.00 3.97
448 451 2.285668 TGGCTTGGGAGGGAGGAG 60.286 66.667 0.00 0.00 0.00 3.69
1082 1085 1.518792 GCGGCGTAGAAGACCTTCC 60.519 63.158 9.37 0.00 40.33 3.46
1141 1144 2.031857 GCTCCTCGATACGAAGAACGAT 60.032 50.000 0.00 0.00 45.77 3.73
1239 1242 4.405671 TCGTCCTCCTCGCCGACT 62.406 66.667 0.00 0.00 0.00 4.18
1466 1893 3.199508 AGCTAGCAATTCACTGATGGAGT 59.800 43.478 18.83 0.00 34.02 3.85
1467 1894 3.806380 AGCTAGCAATTCACTGATGGAG 58.194 45.455 18.83 0.00 0.00 3.86
1468 1895 3.920231 AGCTAGCAATTCACTGATGGA 57.080 42.857 18.83 0.00 0.00 3.41
1578 2007 3.665190 GGAGTCTGTTGGAGTACAAAGG 58.335 50.000 0.00 0.00 41.58 3.11
1729 2164 7.063898 CACATTGTACCTGAGACTGAAGTAATG 59.936 40.741 0.00 0.00 0.00 1.90
1763 2198 2.294233 GACACAATGTGAACCTGTGCAT 59.706 45.455 21.34 0.00 43.42 3.96
1766 2201 3.058016 GGATGACACAATGTGAACCTGTG 60.058 47.826 21.34 9.88 44.81 3.66
1785 2220 7.607607 GCATTTCTTTTAATCCTTGGTTTGGAT 59.392 33.333 0.00 0.00 45.41 3.41
1786 2221 6.934083 GCATTTCTTTTAATCCTTGGTTTGGA 59.066 34.615 0.00 0.00 38.06 3.53
1787 2222 6.936335 AGCATTTCTTTTAATCCTTGGTTTGG 59.064 34.615 0.00 0.00 0.00 3.28
1856 2291 6.448852 TCACAAATTCCATCACATTTGACAG 58.551 36.000 10.76 2.42 41.18 3.51
1865 2300 9.836076 CATATGACATATCACAAATTCCATCAC 57.164 33.333 4.91 0.00 37.79 3.06
1974 2409 6.196434 TCTTTAAACCCAACCCTTAAACTGT 58.804 36.000 0.00 0.00 0.00 3.55
1996 2431 3.185455 ACAGGGGCAAAGACTAGAATCT 58.815 45.455 0.00 0.00 0.00 2.40
1998 2433 4.388577 AAACAGGGGCAAAGACTAGAAT 57.611 40.909 0.00 0.00 0.00 2.40
2001 2436 3.888930 TGAAAAACAGGGGCAAAGACTAG 59.111 43.478 0.00 0.00 0.00 2.57
2034 2469 3.128589 TGAGAAGTGCCACTTTTTGACAC 59.871 43.478 12.09 0.00 38.80 3.67
2073 2508 2.525368 CCCTAAACCCTCAAACCCTTG 58.475 52.381 0.00 0.00 0.00 3.61
2113 2548 5.308014 TGAGAACTCACTTGGTACGTACTA 58.692 41.667 24.07 16.71 34.14 1.82
2127 2562 1.887198 GACCGGAAGAGTGAGAACTCA 59.113 52.381 9.46 0.00 39.12 3.41
2128 2563 1.887198 TGACCGGAAGAGTGAGAACTC 59.113 52.381 9.46 0.00 37.03 3.01
2129 2564 1.996798 TGACCGGAAGAGTGAGAACT 58.003 50.000 9.46 0.00 0.00 3.01
2130 2565 2.036089 AGTTGACCGGAAGAGTGAGAAC 59.964 50.000 9.46 0.00 0.00 3.01
2131 2566 2.317040 AGTTGACCGGAAGAGTGAGAA 58.683 47.619 9.46 0.00 0.00 2.87
2132 2567 1.996798 AGTTGACCGGAAGAGTGAGA 58.003 50.000 9.46 0.00 0.00 3.27
2133 2568 2.821991 AAGTTGACCGGAAGAGTGAG 57.178 50.000 9.46 0.00 0.00 3.51
2134 2569 3.493334 TCTAAGTTGACCGGAAGAGTGA 58.507 45.455 9.46 0.00 0.00 3.41
2135 2570 3.936372 TCTAAGTTGACCGGAAGAGTG 57.064 47.619 9.46 0.00 0.00 3.51
2136 2571 3.306156 GCTTCTAAGTTGACCGGAAGAGT 60.306 47.826 9.46 0.00 36.48 3.24
2137 2572 3.056465 AGCTTCTAAGTTGACCGGAAGAG 60.056 47.826 9.46 0.00 36.48 2.85
2138 2573 2.897969 AGCTTCTAAGTTGACCGGAAGA 59.102 45.455 9.46 0.00 36.48 2.87
2139 2574 2.996621 CAGCTTCTAAGTTGACCGGAAG 59.003 50.000 9.46 0.00 39.29 3.46
2140 2575 2.367567 ACAGCTTCTAAGTTGACCGGAA 59.632 45.455 9.46 0.00 39.29 4.30
2141 2576 1.968493 ACAGCTTCTAAGTTGACCGGA 59.032 47.619 9.46 0.00 39.29 5.14
2142 2577 2.338500 GACAGCTTCTAAGTTGACCGG 58.662 52.381 12.72 0.00 39.29 5.28
2143 2578 1.986378 CGACAGCTTCTAAGTTGACCG 59.014 52.381 12.72 11.01 39.29 4.79
2144 2579 3.027974 ACGACAGCTTCTAAGTTGACC 57.972 47.619 12.72 4.31 39.29 4.02
2145 2580 4.090210 GCTAACGACAGCTTCTAAGTTGAC 59.910 45.833 12.72 6.32 39.29 3.18
2146 2581 4.235360 GCTAACGACAGCTTCTAAGTTGA 58.765 43.478 12.72 0.00 39.29 3.18
2147 2582 4.569801 GCTAACGACAGCTTCTAAGTTG 57.430 45.455 5.17 5.17 42.17 3.16
2157 2592 4.815040 TGTATCTAGAGCTAACGACAGC 57.185 45.455 0.00 5.09 42.12 4.40
2158 2593 6.366315 ACTTGTATCTAGAGCTAACGACAG 57.634 41.667 0.00 0.00 0.00 3.51
2159 2594 7.012138 CCTTACTTGTATCTAGAGCTAACGACA 59.988 40.741 0.00 0.00 0.00 4.35
2160 2595 7.012232 ACCTTACTTGTATCTAGAGCTAACGAC 59.988 40.741 0.00 0.00 0.00 4.34
2161 2596 7.052873 ACCTTACTTGTATCTAGAGCTAACGA 58.947 38.462 0.00 0.00 0.00 3.85
2162 2597 7.012138 TGACCTTACTTGTATCTAGAGCTAACG 59.988 40.741 0.00 0.00 0.00 3.18
2163 2598 8.223177 TGACCTTACTTGTATCTAGAGCTAAC 57.777 38.462 0.00 0.00 0.00 2.34
2164 2599 8.818622 TTGACCTTACTTGTATCTAGAGCTAA 57.181 34.615 0.00 0.00 0.00 3.09
2165 2600 8.684520 GTTTGACCTTACTTGTATCTAGAGCTA 58.315 37.037 0.00 0.00 0.00 3.32
2166 2601 7.397761 AGTTTGACCTTACTTGTATCTAGAGCT 59.602 37.037 0.00 0.00 0.00 4.09
2167 2602 7.548967 AGTTTGACCTTACTTGTATCTAGAGC 58.451 38.462 0.00 0.00 0.00 4.09
2168 2603 9.930693 AAAGTTTGACCTTACTTGTATCTAGAG 57.069 33.333 0.00 0.00 34.95 2.43
2169 2604 9.924650 GAAAGTTTGACCTTACTTGTATCTAGA 57.075 33.333 0.00 0.00 34.95 2.43
2170 2605 9.706691 TGAAAGTTTGACCTTACTTGTATCTAG 57.293 33.333 0.00 0.00 34.95 2.43
2172 2607 8.974060 TTGAAAGTTTGACCTTACTTGTATCT 57.026 30.769 0.00 0.00 34.95 1.98
2173 2608 9.447040 GTTTGAAAGTTTGACCTTACTTGTATC 57.553 33.333 0.00 0.00 34.95 2.24
2174 2609 8.410912 GGTTTGAAAGTTTGACCTTACTTGTAT 58.589 33.333 0.00 0.00 34.95 2.29
2175 2610 7.612633 AGGTTTGAAAGTTTGACCTTACTTGTA 59.387 33.333 8.42 0.00 37.44 2.41
2176 2611 6.436218 AGGTTTGAAAGTTTGACCTTACTTGT 59.564 34.615 8.42 0.00 37.44 3.16
2177 2612 6.751888 CAGGTTTGAAAGTTTGACCTTACTTG 59.248 38.462 10.65 0.72 38.62 3.16
2178 2613 6.436218 ACAGGTTTGAAAGTTTGACCTTACTT 59.564 34.615 10.65 0.00 38.62 2.24
2179 2614 5.949952 ACAGGTTTGAAAGTTTGACCTTACT 59.050 36.000 10.65 0.00 38.62 2.24
2180 2615 6.203808 ACAGGTTTGAAAGTTTGACCTTAC 57.796 37.500 10.65 0.00 38.62 2.34
2181 2616 6.434652 TCAACAGGTTTGAAAGTTTGACCTTA 59.565 34.615 10.65 0.00 38.62 2.69
2182 2617 5.245075 TCAACAGGTTTGAAAGTTTGACCTT 59.755 36.000 10.65 3.41 38.62 3.50
2183 2618 4.770010 TCAACAGGTTTGAAAGTTTGACCT 59.230 37.500 8.42 8.42 41.23 3.85
2184 2619 4.862574 GTCAACAGGTTTGAAAGTTTGACC 59.137 41.667 0.00 0.00 0.00 4.02
2185 2620 5.709966 AGTCAACAGGTTTGAAAGTTTGAC 58.290 37.500 0.00 10.51 0.00 3.18
2186 2621 5.975693 AGTCAACAGGTTTGAAAGTTTGA 57.024 34.783 0.00 0.00 0.00 2.69
2187 2622 6.747280 CAGTAGTCAACAGGTTTGAAAGTTTG 59.253 38.462 0.00 0.00 0.00 2.93
2188 2623 6.657541 TCAGTAGTCAACAGGTTTGAAAGTTT 59.342 34.615 0.00 0.00 0.00 2.66
2189 2624 6.177610 TCAGTAGTCAACAGGTTTGAAAGTT 58.822 36.000 0.00 0.00 0.00 2.66
2190 2625 5.741011 TCAGTAGTCAACAGGTTTGAAAGT 58.259 37.500 0.00 0.00 0.00 2.66
2191 2626 6.867662 ATCAGTAGTCAACAGGTTTGAAAG 57.132 37.500 0.00 0.00 0.00 2.62
2192 2627 8.918202 AATATCAGTAGTCAACAGGTTTGAAA 57.082 30.769 0.00 0.00 0.00 2.69
2263 2698 9.578576 ACTTTTGACATAGATTATGCACCATAT 57.421 29.630 0.00 0.00 39.79 1.78
2264 2699 8.978874 ACTTTTGACATAGATTATGCACCATA 57.021 30.769 0.00 0.00 39.79 2.74
2265 2700 7.886629 ACTTTTGACATAGATTATGCACCAT 57.113 32.000 0.00 0.00 39.79 3.55
2266 2701 8.978874 ATACTTTTGACATAGATTATGCACCA 57.021 30.769 0.00 0.00 39.79 4.17
2270 2705 9.599322 CGGAAATACTTTTGACATAGATTATGC 57.401 33.333 0.00 0.00 39.79 3.14
2271 2706 9.599322 GCGGAAATACTTTTGACATAGATTATG 57.401 33.333 0.00 0.00 41.88 1.90
2272 2707 9.337396 TGCGGAAATACTTTTGACATAGATTAT 57.663 29.630 0.00 0.00 0.00 1.28
2273 2708 8.725405 TGCGGAAATACTTTTGACATAGATTA 57.275 30.769 0.00 0.00 0.00 1.75
2274 2709 7.624360 TGCGGAAATACTTTTGACATAGATT 57.376 32.000 0.00 0.00 0.00 2.40
2275 2710 7.624360 TTGCGGAAATACTTTTGACATAGAT 57.376 32.000 0.00 0.00 0.00 1.98
2276 2711 7.624360 ATTGCGGAAATACTTTTGACATAGA 57.376 32.000 0.00 0.00 0.00 1.98
2277 2712 9.385902 CATATTGCGGAAATACTTTTGACATAG 57.614 33.333 0.00 0.00 33.53 2.23
2278 2713 8.898761 ACATATTGCGGAAATACTTTTGACATA 58.101 29.630 0.00 0.00 33.53 2.29
2279 2714 7.771183 ACATATTGCGGAAATACTTTTGACAT 58.229 30.769 0.00 0.00 33.53 3.06
2280 2715 7.151999 ACATATTGCGGAAATACTTTTGACA 57.848 32.000 0.00 0.00 33.53 3.58
2281 2716 9.730420 AATACATATTGCGGAAATACTTTTGAC 57.270 29.630 0.00 0.00 33.53 3.18
2286 2721 9.561069 AGAGAAATACATATTGCGGAAATACTT 57.439 29.630 0.00 0.00 33.53 2.24
2287 2722 9.561069 AAGAGAAATACATATTGCGGAAATACT 57.439 29.630 0.00 0.00 33.53 2.12
2291 2726 9.391006 ACTTAAGAGAAATACATATTGCGGAAA 57.609 29.630 10.09 0.00 0.00 3.13
2292 2727 8.958119 ACTTAAGAGAAATACATATTGCGGAA 57.042 30.769 10.09 0.00 0.00 4.30
2293 2728 8.826710 CAACTTAAGAGAAATACATATTGCGGA 58.173 33.333 10.09 0.00 0.00 5.54
2294 2729 8.612619 ACAACTTAAGAGAAATACATATTGCGG 58.387 33.333 10.09 0.00 0.00 5.69
2295 2730 9.425893 CACAACTTAAGAGAAATACATATTGCG 57.574 33.333 10.09 0.00 0.00 4.85
2302 2737 9.710979 CGAAAAACACAACTTAAGAGAAATACA 57.289 29.630 10.09 0.00 0.00 2.29
2303 2738 9.925268 TCGAAAAACACAACTTAAGAGAAATAC 57.075 29.630 10.09 0.00 0.00 1.89
2304 2739 9.925268 GTCGAAAAACACAACTTAAGAGAAATA 57.075 29.630 10.09 0.00 0.00 1.40
2305 2740 7.913821 GGTCGAAAAACACAACTTAAGAGAAAT 59.086 33.333 10.09 0.00 0.00 2.17
2306 2741 7.094720 TGGTCGAAAAACACAACTTAAGAGAAA 60.095 33.333 10.09 0.00 0.00 2.52
2307 2742 6.372103 TGGTCGAAAAACACAACTTAAGAGAA 59.628 34.615 10.09 0.00 0.00 2.87
2308 2743 5.875910 TGGTCGAAAAACACAACTTAAGAGA 59.124 36.000 10.09 0.00 0.00 3.10
2309 2744 6.114221 TGGTCGAAAAACACAACTTAAGAG 57.886 37.500 10.09 3.81 0.00 2.85
2310 2745 6.687081 ATGGTCGAAAAACACAACTTAAGA 57.313 33.333 10.09 0.00 0.00 2.10
2311 2746 7.749539 AAATGGTCGAAAAACACAACTTAAG 57.250 32.000 0.00 0.00 0.00 1.85
2312 2747 7.813148 TCAAAATGGTCGAAAAACACAACTTAA 59.187 29.630 0.00 0.00 0.00 1.85
2313 2748 7.313646 TCAAAATGGTCGAAAAACACAACTTA 58.686 30.769 0.00 0.00 0.00 2.24
2314 2749 6.159988 TCAAAATGGTCGAAAAACACAACTT 58.840 32.000 0.00 0.00 0.00 2.66
2315 2750 5.715070 TCAAAATGGTCGAAAAACACAACT 58.285 33.333 0.00 0.00 0.00 3.16
2316 2751 6.090223 AGTTCAAAATGGTCGAAAAACACAAC 59.910 34.615 0.00 0.00 0.00 3.32
2317 2752 6.159988 AGTTCAAAATGGTCGAAAAACACAA 58.840 32.000 0.00 0.00 0.00 3.33
2318 2753 5.715070 AGTTCAAAATGGTCGAAAAACACA 58.285 33.333 0.00 0.00 0.00 3.72
2319 2754 7.096230 CCATAGTTCAAAATGGTCGAAAAACAC 60.096 37.037 0.00 0.00 38.28 3.32
2320 2755 6.920758 CCATAGTTCAAAATGGTCGAAAAACA 59.079 34.615 0.00 0.00 38.28 2.83
2321 2756 7.142680 TCCATAGTTCAAAATGGTCGAAAAAC 58.857 34.615 0.00 0.00 42.77 2.43
2322 2757 7.278461 TCCATAGTTCAAAATGGTCGAAAAA 57.722 32.000 0.00 0.00 42.77 1.94
2323 2758 6.885952 TCCATAGTTCAAAATGGTCGAAAA 57.114 33.333 0.00 0.00 42.77 2.29
2324 2759 6.624861 GCATCCATAGTTCAAAATGGTCGAAA 60.625 38.462 0.00 0.00 42.77 3.46
2325 2760 5.163663 GCATCCATAGTTCAAAATGGTCGAA 60.164 40.000 0.00 0.00 42.77 3.71
2326 2761 4.335315 GCATCCATAGTTCAAAATGGTCGA 59.665 41.667 1.56 0.00 42.77 4.20
2327 2762 4.336433 AGCATCCATAGTTCAAAATGGTCG 59.664 41.667 1.56 0.00 42.77 4.79
2328 2763 5.841957 AGCATCCATAGTTCAAAATGGTC 57.158 39.130 1.56 0.00 42.77 4.02
2329 2764 7.716799 TTAAGCATCCATAGTTCAAAATGGT 57.283 32.000 1.56 0.00 42.77 3.55
2330 2765 9.037737 CATTTAAGCATCCATAGTTCAAAATGG 57.962 33.333 0.00 0.00 43.44 3.16
2331 2766 9.806203 TCATTTAAGCATCCATAGTTCAAAATG 57.194 29.630 0.00 0.00 33.85 2.32
2332 2767 9.807649 GTCATTTAAGCATCCATAGTTCAAAAT 57.192 29.630 0.00 0.00 0.00 1.82
2333 2768 8.801299 TGTCATTTAAGCATCCATAGTTCAAAA 58.199 29.630 0.00 0.00 0.00 2.44
2334 2769 8.347004 TGTCATTTAAGCATCCATAGTTCAAA 57.653 30.769 0.00 0.00 0.00 2.69
2335 2770 7.936496 TGTCATTTAAGCATCCATAGTTCAA 57.064 32.000 0.00 0.00 0.00 2.69
2336 2771 9.797642 ATATGTCATTTAAGCATCCATAGTTCA 57.202 29.630 0.00 0.00 0.00 3.18
2346 2781 9.515020 CCGTTGTAAAATATGTCATTTAAGCAT 57.485 29.630 0.00 0.00 0.00 3.79
2347 2782 8.516234 ACCGTTGTAAAATATGTCATTTAAGCA 58.484 29.630 0.00 0.00 0.00 3.91
2348 2783 8.905103 ACCGTTGTAAAATATGTCATTTAAGC 57.095 30.769 0.00 0.00 0.00 3.09
2353 2788 9.535878 ACAAAAACCGTTGTAAAATATGTCATT 57.464 25.926 0.00 0.00 39.94 2.57
2354 2789 9.535878 AACAAAAACCGTTGTAAAATATGTCAT 57.464 25.926 0.00 0.00 40.86 3.06
2355 2790 8.928270 AACAAAAACCGTTGTAAAATATGTCA 57.072 26.923 0.00 0.00 40.86 3.58
2360 2795 9.298774 CCAACTAACAAAAACCGTTGTAAAATA 57.701 29.630 0.00 0.00 40.86 1.40
2361 2796 7.818446 ACCAACTAACAAAAACCGTTGTAAAAT 59.182 29.630 0.00 0.00 40.86 1.82
2362 2797 7.150640 ACCAACTAACAAAAACCGTTGTAAAA 58.849 30.769 0.00 0.00 40.86 1.52
2363 2798 6.685657 ACCAACTAACAAAAACCGTTGTAAA 58.314 32.000 0.00 0.00 40.86 2.01
2364 2799 6.264841 ACCAACTAACAAAAACCGTTGTAA 57.735 33.333 0.00 0.00 40.86 2.41
2365 2800 5.893897 ACCAACTAACAAAAACCGTTGTA 57.106 34.783 0.00 0.00 40.86 2.41
2366 2801 4.787260 ACCAACTAACAAAAACCGTTGT 57.213 36.364 0.00 0.00 43.58 3.32
2367 2802 5.230516 GCTAACCAACTAACAAAAACCGTTG 59.769 40.000 0.00 0.00 35.85 4.10
2368 2803 5.342433 GCTAACCAACTAACAAAAACCGTT 58.658 37.500 0.00 0.00 0.00 4.44
2369 2804 4.202040 GGCTAACCAACTAACAAAAACCGT 60.202 41.667 0.00 0.00 35.26 4.83
2370 2805 4.202030 TGGCTAACCAACTAACAAAAACCG 60.202 41.667 0.00 0.00 45.37 4.44
2371 2806 5.265350 TGGCTAACCAACTAACAAAAACC 57.735 39.130 0.00 0.00 45.37 3.27
2392 2827 3.930336 TCTTAATGTCCACTGAGCTGTG 58.070 45.455 0.00 0.00 37.66 3.66
2393 2828 4.623932 TTCTTAATGTCCACTGAGCTGT 57.376 40.909 0.00 0.00 0.00 4.40
2394 2829 4.756642 TGTTTCTTAATGTCCACTGAGCTG 59.243 41.667 0.00 0.00 0.00 4.24
2395 2830 4.973168 TGTTTCTTAATGTCCACTGAGCT 58.027 39.130 0.00 0.00 0.00 4.09
2396 2831 5.412594 TGATGTTTCTTAATGTCCACTGAGC 59.587 40.000 0.00 0.00 0.00 4.26
2397 2832 7.621428 ATGATGTTTCTTAATGTCCACTGAG 57.379 36.000 0.00 0.00 0.00 3.35
2398 2833 7.094248 CCAATGATGTTTCTTAATGTCCACTGA 60.094 37.037 0.00 0.00 0.00 3.41
2399 2834 7.031372 CCAATGATGTTTCTTAATGTCCACTG 58.969 38.462 0.00 0.00 0.00 3.66
2400 2835 6.153340 CCCAATGATGTTTCTTAATGTCCACT 59.847 38.462 0.00 0.00 0.00 4.00
2401 2836 6.152661 TCCCAATGATGTTTCTTAATGTCCAC 59.847 38.462 0.00 0.00 0.00 4.02
2402 2837 6.252233 TCCCAATGATGTTTCTTAATGTCCA 58.748 36.000 0.00 0.00 0.00 4.02
2403 2838 6.603201 TCTCCCAATGATGTTTCTTAATGTCC 59.397 38.462 0.00 0.00 0.00 4.02
2404 2839 7.630242 TCTCCCAATGATGTTTCTTAATGTC 57.370 36.000 0.00 0.00 0.00 3.06
2405 2840 8.599624 ATTCTCCCAATGATGTTTCTTAATGT 57.400 30.769 0.00 0.00 0.00 2.71
2410 2845 8.480501 CCAAATATTCTCCCAATGATGTTTCTT 58.519 33.333 0.00 0.00 0.00 2.52
2411 2846 7.070322 CCCAAATATTCTCCCAATGATGTTTCT 59.930 37.037 0.00 0.00 0.00 2.52
2412 2847 7.212274 CCCAAATATTCTCCCAATGATGTTTC 58.788 38.462 0.00 0.00 0.00 2.78
2413 2848 6.100134 CCCCAAATATTCTCCCAATGATGTTT 59.900 38.462 0.00 0.00 0.00 2.83
2414 2849 5.603813 CCCCAAATATTCTCCCAATGATGTT 59.396 40.000 0.00 0.00 0.00 2.71
2415 2850 5.149976 CCCCAAATATTCTCCCAATGATGT 58.850 41.667 0.00 0.00 0.00 3.06
2416 2851 4.020839 GCCCCAAATATTCTCCCAATGATG 60.021 45.833 0.00 0.00 0.00 3.07
2417 2852 4.162651 GCCCCAAATATTCTCCCAATGAT 58.837 43.478 0.00 0.00 0.00 2.45
2418 2853 3.052262 TGCCCCAAATATTCTCCCAATGA 60.052 43.478 0.00 0.00 0.00 2.57
2419 2854 3.070015 GTGCCCCAAATATTCTCCCAATG 59.930 47.826 0.00 0.00 0.00 2.82
2420 2855 3.308401 GTGCCCCAAATATTCTCCCAAT 58.692 45.455 0.00 0.00 0.00 3.16
2421 2856 2.745968 GTGCCCCAAATATTCTCCCAA 58.254 47.619 0.00 0.00 0.00 4.12
2422 2857 1.409521 CGTGCCCCAAATATTCTCCCA 60.410 52.381 0.00 0.00 0.00 4.37
2423 2858 1.318576 CGTGCCCCAAATATTCTCCC 58.681 55.000 0.00 0.00 0.00 4.30
2424 2859 2.052782 ACGTGCCCCAAATATTCTCC 57.947 50.000 0.00 0.00 0.00 3.71
2425 2860 4.035208 CACTTACGTGCCCCAAATATTCTC 59.965 45.833 0.00 0.00 33.82 2.87
2426 2861 3.945285 CACTTACGTGCCCCAAATATTCT 59.055 43.478 0.00 0.00 33.82 2.40
2427 2862 4.287238 CACTTACGTGCCCCAAATATTC 57.713 45.455 0.00 0.00 33.82 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.