Multiple sequence alignment - TraesCS7B01G318200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G318200 chr7B 100.000 2800 0 0 1 2800 568108584 568105785 0.000000e+00 5171.0
1 TraesCS7B01G318200 chr7B 97.826 276 5 1 2525 2800 14784037 14783763 2.520000e-130 475.0
2 TraesCS7B01G318200 chr7D 92.718 1895 74 25 669 2527 529956943 529955077 0.000000e+00 2676.0
3 TraesCS7B01G318200 chr7D 88.018 217 17 5 403 615 529957744 529957533 5.990000e-62 248.0
4 TraesCS7B01G318200 chr7D 97.778 45 1 0 620 664 529957495 529957451 8.320000e-11 78.7
5 TraesCS7B01G318200 chr7A 91.484 1867 81 38 687 2527 609431978 609430164 0.000000e+00 2495.0
6 TraesCS7B01G318200 chr7A 87.624 202 17 4 404 601 609432832 609432635 7.800000e-56 228.0
7 TraesCS7B01G318200 chr7A 100.000 45 0 0 620 664 609432577 609432533 1.790000e-12 84.2
8 TraesCS7B01G318200 chr4B 98.913 276 3 0 2525 2800 25775353 25775628 6.970000e-136 494.0
9 TraesCS7B01G318200 chr5B 98.188 276 5 0 2525 2800 108989307 108989582 1.510000e-132 483.0
10 TraesCS7B01G318200 chr5B 97.464 276 7 0 2525 2800 484841992 484841717 3.260000e-129 472.0
11 TraesCS7B01G318200 chr5B 91.304 276 23 1 2525 2800 259543584 259543310 2.630000e-100 375.0
12 TraesCS7B01G318200 chr5B 90.942 276 25 0 2525 2800 630460130 630460405 3.410000e-99 372.0
13 TraesCS7B01G318200 chr5B 79.512 205 33 8 1201 1400 383036031 383036231 1.350000e-28 137.0
14 TraesCS7B01G318200 chr1B 93.040 273 19 0 2528 2800 48161025 48160753 1.560000e-107 399.0
15 TraesCS7B01G318200 chr1D 78.837 619 77 33 1203 1792 14986286 14985693 4.410000e-98 368.0
16 TraesCS7B01G318200 chrUn 90.000 280 27 1 2522 2800 322214530 322214251 7.370000e-96 361.0
17 TraesCS7B01G318200 chrUn 90.000 280 27 1 2522 2800 323316266 323316545 7.370000e-96 361.0
18 TraesCS7B01G318200 chr6A 82.486 354 47 12 1078 1425 85586837 85586493 2.110000e-76 296.0
19 TraesCS7B01G318200 chr6B 81.534 352 51 11 1078 1425 143200178 143199837 7.640000e-71 278.0
20 TraesCS7B01G318200 chr2D 82.464 211 34 3 1201 1409 539895943 539895734 6.160000e-42 182.0
21 TraesCS7B01G318200 chr5D 79.412 204 35 6 1201 1400 330078606 330078806 1.350000e-28 137.0
22 TraesCS7B01G318200 chr5A 77.934 213 40 6 1201 1409 426730439 426730230 2.930000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G318200 chr7B 568105785 568108584 2799 True 5171.000000 5171 100.000 1 2800 1 chr7B.!!$R2 2799
1 TraesCS7B01G318200 chr7D 529955077 529957744 2667 True 1000.900000 2676 92.838 403 2527 3 chr7D.!!$R1 2124
2 TraesCS7B01G318200 chr7A 609430164 609432832 2668 True 935.733333 2495 93.036 404 2527 3 chr7A.!!$R1 2123
3 TraesCS7B01G318200 chr1D 14985693 14986286 593 True 368.000000 368 78.837 1203 1792 1 chr1D.!!$R1 589

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
132 133 0.031917 TGATCATGGGCCCATTGCTT 60.032 50.0 35.69 19.06 40.92 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1884 2535 0.529378 CCTTGAGCTGAAACCATGGC 59.471 55.0 13.04 0.0 0.0 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.537729 AAAACCGCGATTATAATTTTTCGTAG 57.462 30.769 8.23 0.00 34.24 3.51
26 27 7.467557 AACCGCGATTATAATTTTTCGTAGA 57.532 32.000 8.23 0.00 34.24 2.59
27 28 7.467557 ACCGCGATTATAATTTTTCGTAGAA 57.532 32.000 8.23 0.00 45.90 2.10
28 29 7.908230 ACCGCGATTATAATTTTTCGTAGAAA 58.092 30.769 8.23 0.00 45.90 2.52
29 30 8.389603 ACCGCGATTATAATTTTTCGTAGAAAA 58.610 29.630 8.23 4.07 45.90 2.29
30 31 8.667204 CCGCGATTATAATTTTTCGTAGAAAAC 58.333 33.333 8.23 0.00 45.90 2.43
31 32 9.201424 CGCGATTATAATTTTTCGTAGAAAACA 57.799 29.630 0.00 1.45 45.90 2.83
75 76 9.506018 AAAACGGTGTAATTTACTAATGTAGGT 57.494 29.630 7.99 0.00 0.00 3.08
76 77 9.506018 AAACGGTGTAATTTACTAATGTAGGTT 57.494 29.630 7.99 0.02 0.00 3.50
77 78 9.506018 AACGGTGTAATTTACTAATGTAGGTTT 57.494 29.630 7.99 0.00 0.00 3.27
78 79 9.506018 ACGGTGTAATTTACTAATGTAGGTTTT 57.494 29.630 7.99 0.00 0.00 2.43
90 91 8.867097 ACTAATGTAGGTTTTAGACACAGAAGA 58.133 33.333 0.00 0.00 31.36 2.87
91 92 9.360093 CTAATGTAGGTTTTAGACACAGAAGAG 57.640 37.037 0.00 0.00 0.00 2.85
92 93 6.726490 TGTAGGTTTTAGACACAGAAGAGT 57.274 37.500 0.00 0.00 0.00 3.24
93 94 6.746120 TGTAGGTTTTAGACACAGAAGAGTC 58.254 40.000 0.00 0.00 35.84 3.36
94 95 6.550108 TGTAGGTTTTAGACACAGAAGAGTCT 59.450 38.462 0.00 0.00 45.68 3.24
95 96 6.091718 AGGTTTTAGACACAGAAGAGTCTC 57.908 41.667 0.00 0.00 43.32 3.36
96 97 5.598830 AGGTTTTAGACACAGAAGAGTCTCA 59.401 40.000 1.94 0.00 43.32 3.27
97 98 6.098409 AGGTTTTAGACACAGAAGAGTCTCAA 59.902 38.462 1.94 0.00 43.32 3.02
98 99 6.761714 GGTTTTAGACACAGAAGAGTCTCAAA 59.238 38.462 1.94 0.00 43.32 2.69
99 100 7.442666 GGTTTTAGACACAGAAGAGTCTCAAAT 59.557 37.037 1.94 0.00 43.32 2.32
100 101 8.831550 GTTTTAGACACAGAAGAGTCTCAAATT 58.168 33.333 1.94 0.00 43.32 1.82
103 104 7.954788 AGACACAGAAGAGTCTCAAATTAAC 57.045 36.000 1.94 0.00 41.01 2.01
104 105 6.642950 AGACACAGAAGAGTCTCAAATTAACG 59.357 38.462 1.94 0.00 41.01 3.18
105 106 6.281405 ACACAGAAGAGTCTCAAATTAACGT 58.719 36.000 1.94 0.00 28.78 3.99
106 107 7.431249 ACACAGAAGAGTCTCAAATTAACGTA 58.569 34.615 1.94 0.00 28.78 3.57
107 108 7.381678 ACACAGAAGAGTCTCAAATTAACGTAC 59.618 37.037 1.94 0.00 28.78 3.67
108 109 7.381408 CACAGAAGAGTCTCAAATTAACGTACA 59.619 37.037 1.94 0.00 28.78 2.90
109 110 7.924412 ACAGAAGAGTCTCAAATTAACGTACAA 59.076 33.333 1.94 0.00 28.78 2.41
110 111 8.215132 CAGAAGAGTCTCAAATTAACGTACAAC 58.785 37.037 1.94 0.00 28.78 3.32
111 112 8.142551 AGAAGAGTCTCAAATTAACGTACAACT 58.857 33.333 1.94 0.00 0.00 3.16
112 113 9.403110 GAAGAGTCTCAAATTAACGTACAACTA 57.597 33.333 1.94 0.00 0.00 2.24
113 114 9.924650 AAGAGTCTCAAATTAACGTACAACTAT 57.075 29.630 1.94 0.00 0.00 2.12
114 115 9.355215 AGAGTCTCAAATTAACGTACAACTATG 57.645 33.333 1.94 0.00 0.00 2.23
115 116 9.350357 GAGTCTCAAATTAACGTACAACTATGA 57.650 33.333 0.00 0.00 0.00 2.15
116 117 9.871238 AGTCTCAAATTAACGTACAACTATGAT 57.129 29.630 0.00 0.00 0.00 2.45
118 119 9.863845 TCTCAAATTAACGTACAACTATGATCA 57.136 29.630 0.00 0.00 0.00 2.92
121 122 9.650371 CAAATTAACGTACAACTATGATCATGG 57.350 33.333 18.72 17.72 0.00 3.66
122 123 7.962964 ATTAACGTACAACTATGATCATGGG 57.037 36.000 21.55 14.52 0.00 4.00
123 124 3.728845 ACGTACAACTATGATCATGGGC 58.271 45.455 21.55 6.83 0.00 5.36
124 125 3.067106 CGTACAACTATGATCATGGGCC 58.933 50.000 21.55 0.00 0.00 5.80
125 126 2.664402 ACAACTATGATCATGGGCCC 57.336 50.000 21.55 17.59 0.00 5.80
126 127 1.852309 ACAACTATGATCATGGGCCCA 59.148 47.619 30.92 30.92 0.00 5.36
127 128 2.448194 ACAACTATGATCATGGGCCCAT 59.552 45.455 32.75 32.75 37.08 4.00
128 129 3.117016 ACAACTATGATCATGGGCCCATT 60.117 43.478 35.69 22.46 33.90 3.16
129 130 3.165087 ACTATGATCATGGGCCCATTG 57.835 47.619 35.69 27.38 33.90 2.82
130 131 1.822990 CTATGATCATGGGCCCATTGC 59.177 52.381 35.69 25.04 33.90 3.56
131 132 0.190069 ATGATCATGGGCCCATTGCT 59.810 50.000 35.69 21.54 40.92 3.91
132 133 0.031917 TGATCATGGGCCCATTGCTT 60.032 50.000 35.69 19.06 40.92 3.91
133 134 1.125633 GATCATGGGCCCATTGCTTT 58.874 50.000 35.69 17.19 40.92 3.51
134 135 1.487558 GATCATGGGCCCATTGCTTTT 59.512 47.619 35.69 15.36 40.92 2.27
135 136 0.903942 TCATGGGCCCATTGCTTTTC 59.096 50.000 35.69 0.00 40.92 2.29
136 137 0.614294 CATGGGCCCATTGCTTTTCA 59.386 50.000 35.69 3.54 40.92 2.69
137 138 1.210967 CATGGGCCCATTGCTTTTCAT 59.789 47.619 35.69 8.16 40.92 2.57
138 139 2.244486 TGGGCCCATTGCTTTTCATA 57.756 45.000 24.45 0.00 40.92 2.15
139 140 1.830477 TGGGCCCATTGCTTTTCATAC 59.170 47.619 24.45 0.00 40.92 2.39
140 141 1.138859 GGGCCCATTGCTTTTCATACC 59.861 52.381 19.95 0.00 40.92 2.73
141 142 1.830477 GGCCCATTGCTTTTCATACCA 59.170 47.619 0.00 0.00 40.92 3.25
142 143 2.235898 GGCCCATTGCTTTTCATACCAA 59.764 45.455 0.00 0.00 40.92 3.67
143 144 3.307339 GGCCCATTGCTTTTCATACCAAA 60.307 43.478 0.00 0.00 40.92 3.28
144 145 4.516323 GCCCATTGCTTTTCATACCAAAT 58.484 39.130 0.00 0.00 36.87 2.32
145 146 5.396213 GGCCCATTGCTTTTCATACCAAATA 60.396 40.000 0.00 0.00 40.92 1.40
146 147 6.290605 GCCCATTGCTTTTCATACCAAATAT 58.709 36.000 0.00 0.00 36.87 1.28
147 148 7.441017 GCCCATTGCTTTTCATACCAAATATA 58.559 34.615 0.00 0.00 36.87 0.86
148 149 7.384932 GCCCATTGCTTTTCATACCAAATATAC 59.615 37.037 0.00 0.00 36.87 1.47
149 150 8.641541 CCCATTGCTTTTCATACCAAATATACT 58.358 33.333 0.00 0.00 0.00 2.12
194 195 7.801716 AAAATACATATTGCACGGTCATAGT 57.198 32.000 0.00 0.00 0.00 2.12
195 196 7.801716 AAATACATATTGCACGGTCATAGTT 57.198 32.000 0.00 0.00 0.00 2.24
196 197 8.896320 AAATACATATTGCACGGTCATAGTTA 57.104 30.769 0.00 0.00 0.00 2.24
197 198 8.896320 AATACATATTGCACGGTCATAGTTAA 57.104 30.769 0.00 0.00 0.00 2.01
198 199 8.896320 ATACATATTGCACGGTCATAGTTAAA 57.104 30.769 0.00 0.00 0.00 1.52
199 200 7.618502 ACATATTGCACGGTCATAGTTAAAA 57.381 32.000 0.00 0.00 0.00 1.52
200 201 8.046294 ACATATTGCACGGTCATAGTTAAAAA 57.954 30.769 0.00 0.00 0.00 1.94
228 229 8.519799 ACTTGAAACTTTTGTAGGAAATCAGA 57.480 30.769 0.00 0.00 0.00 3.27
229 230 8.966868 ACTTGAAACTTTTGTAGGAAATCAGAA 58.033 29.630 0.00 0.00 0.00 3.02
230 231 9.455847 CTTGAAACTTTTGTAGGAAATCAGAAG 57.544 33.333 0.00 0.00 33.78 2.85
231 232 8.519799 TGAAACTTTTGTAGGAAATCAGAAGT 57.480 30.769 0.00 0.00 39.50 3.01
232 233 9.621629 TGAAACTTTTGTAGGAAATCAGAAGTA 57.378 29.630 0.00 0.00 37.79 2.24
233 234 9.880064 GAAACTTTTGTAGGAAATCAGAAGTAC 57.120 33.333 0.00 0.00 37.79 2.73
234 235 8.974060 AACTTTTGTAGGAAATCAGAAGTACA 57.026 30.769 0.00 0.00 37.79 2.90
235 236 8.974060 ACTTTTGTAGGAAATCAGAAGTACAA 57.026 30.769 0.00 0.00 37.28 2.41
236 237 9.403583 ACTTTTGTAGGAAATCAGAAGTACAAA 57.596 29.630 0.00 0.00 37.28 2.83
239 240 8.974060 TTGTAGGAAATCAGAAGTACAAAACT 57.026 30.769 0.00 0.00 41.49 2.66
255 256 8.870879 AGTACAAAACTTTACTATCGATTCTGC 58.129 33.333 1.71 0.00 33.35 4.26
256 257 7.907214 ACAAAACTTTACTATCGATTCTGCT 57.093 32.000 1.71 0.00 0.00 4.24
257 258 8.997621 ACAAAACTTTACTATCGATTCTGCTA 57.002 30.769 1.71 0.00 0.00 3.49
258 259 9.601217 ACAAAACTTTACTATCGATTCTGCTAT 57.399 29.630 1.71 0.00 0.00 2.97
263 264 9.685828 ACTTTACTATCGATTCTGCTATTTCTC 57.314 33.333 1.71 0.00 0.00 2.87
264 265 9.684448 CTTTACTATCGATTCTGCTATTTCTCA 57.316 33.333 1.71 0.00 0.00 3.27
267 268 8.755696 ACTATCGATTCTGCTATTTCTCATTC 57.244 34.615 1.71 0.00 0.00 2.67
268 269 6.702972 ATCGATTCTGCTATTTCTCATTCG 57.297 37.500 0.00 0.00 0.00 3.34
269 270 5.831997 TCGATTCTGCTATTTCTCATTCGA 58.168 37.500 0.00 0.00 0.00 3.71
270 271 5.917447 TCGATTCTGCTATTTCTCATTCGAG 59.083 40.000 0.00 0.00 40.98 4.04
271 272 5.689514 CGATTCTGCTATTTCTCATTCGAGT 59.310 40.000 0.00 0.00 40.44 4.18
272 273 6.858478 CGATTCTGCTATTTCTCATTCGAGTA 59.142 38.462 0.00 0.00 40.44 2.59
273 274 7.379797 CGATTCTGCTATTTCTCATTCGAGTAA 59.620 37.037 0.00 0.00 40.44 2.24
274 275 7.993821 TTCTGCTATTTCTCATTCGAGTAAG 57.006 36.000 0.00 0.00 40.44 2.34
275 276 7.334844 TCTGCTATTTCTCATTCGAGTAAGA 57.665 36.000 0.00 0.00 40.44 2.10
276 277 7.772166 TCTGCTATTTCTCATTCGAGTAAGAA 58.228 34.615 0.00 0.00 40.44 2.52
277 278 8.251026 TCTGCTATTTCTCATTCGAGTAAGAAA 58.749 33.333 8.53 8.53 40.78 2.52
278 279 8.948631 TGCTATTTCTCATTCGAGTAAGAAAT 57.051 30.769 19.43 19.43 45.55 2.17
305 306 8.651391 TCTACTAACAAAAACTGTTCGAATCA 57.349 30.769 0.00 0.52 45.50 2.57
306 307 8.761497 TCTACTAACAAAAACTGTTCGAATCAG 58.239 33.333 19.55 19.55 45.50 2.90
307 308 7.548196 ACTAACAAAAACTGTTCGAATCAGA 57.452 32.000 24.80 7.56 45.50 3.27
308 309 7.407337 ACTAACAAAAACTGTTCGAATCAGAC 58.593 34.615 24.80 6.08 45.50 3.51
309 310 5.811399 ACAAAAACTGTTCGAATCAGACA 57.189 34.783 24.80 9.96 32.99 3.41
310 311 6.377327 ACAAAAACTGTTCGAATCAGACAT 57.623 33.333 24.80 13.15 32.99 3.06
311 312 6.430451 ACAAAAACTGTTCGAATCAGACATC 58.570 36.000 24.80 3.58 32.99 3.06
312 313 6.038161 ACAAAAACTGTTCGAATCAGACATCA 59.962 34.615 24.80 7.47 32.99 3.07
313 314 5.852738 AAACTGTTCGAATCAGACATCAG 57.147 39.130 24.80 16.62 36.81 2.90
314 315 3.854666 ACTGTTCGAATCAGACATCAGG 58.145 45.455 24.80 3.19 36.81 3.86
315 316 3.511540 ACTGTTCGAATCAGACATCAGGA 59.488 43.478 24.80 0.00 36.81 3.86
316 317 4.161189 ACTGTTCGAATCAGACATCAGGAT 59.839 41.667 24.80 5.73 36.81 3.24
317 318 5.089970 TGTTCGAATCAGACATCAGGATT 57.910 39.130 0.00 0.00 34.16 3.01
318 319 5.491070 TGTTCGAATCAGACATCAGGATTT 58.509 37.500 0.00 0.00 31.77 2.17
319 320 5.352293 TGTTCGAATCAGACATCAGGATTTG 59.648 40.000 0.00 0.00 34.94 2.32
320 321 5.343307 TCGAATCAGACATCAGGATTTGA 57.657 39.130 10.11 10.11 38.49 2.69
321 322 5.354767 TCGAATCAGACATCAGGATTTGAG 58.645 41.667 10.11 3.57 39.68 3.02
322 323 4.025061 CGAATCAGACATCAGGATTTGAGC 60.025 45.833 7.34 0.00 39.68 4.26
323 324 3.986996 TCAGACATCAGGATTTGAGCA 57.013 42.857 0.00 0.00 39.68 4.26
324 325 4.290711 TCAGACATCAGGATTTGAGCAA 57.709 40.909 0.00 0.00 39.68 3.91
325 326 4.259356 TCAGACATCAGGATTTGAGCAAG 58.741 43.478 0.00 0.00 39.68 4.01
326 327 4.008330 CAGACATCAGGATTTGAGCAAGT 58.992 43.478 0.00 0.00 39.68 3.16
327 328 4.008330 AGACATCAGGATTTGAGCAAGTG 58.992 43.478 0.00 0.00 39.68 3.16
328 329 2.490903 ACATCAGGATTTGAGCAAGTGC 59.509 45.455 0.00 0.00 39.68 4.40
329 330 2.275134 TCAGGATTTGAGCAAGTGCA 57.725 45.000 6.00 0.00 45.16 4.57
330 331 2.585330 TCAGGATTTGAGCAAGTGCAA 58.415 42.857 6.00 0.00 45.16 4.08
331 332 2.957680 TCAGGATTTGAGCAAGTGCAAA 59.042 40.909 6.00 0.00 45.16 3.68
332 333 3.384146 TCAGGATTTGAGCAAGTGCAAAA 59.616 39.130 6.00 6.37 45.16 2.44
333 334 3.739300 CAGGATTTGAGCAAGTGCAAAAG 59.261 43.478 6.00 0.00 45.16 2.27
334 335 3.062042 GGATTTGAGCAAGTGCAAAAGG 58.938 45.455 6.00 0.00 45.16 3.11
335 336 3.243839 GGATTTGAGCAAGTGCAAAAGGA 60.244 43.478 6.00 0.00 45.16 3.36
336 337 4.562143 GGATTTGAGCAAGTGCAAAAGGAT 60.562 41.667 6.00 0.00 45.16 3.24
337 338 3.374220 TTGAGCAAGTGCAAAAGGATG 57.626 42.857 6.00 0.00 45.16 3.51
338 339 2.585330 TGAGCAAGTGCAAAAGGATGA 58.415 42.857 6.00 0.00 45.16 2.92
339 340 2.555325 TGAGCAAGTGCAAAAGGATGAG 59.445 45.455 6.00 0.00 45.16 2.90
340 341 1.271656 AGCAAGTGCAAAAGGATGAGC 59.728 47.619 6.00 0.00 45.16 4.26
341 342 1.271656 GCAAGTGCAAAAGGATGAGCT 59.728 47.619 0.00 0.00 41.59 4.09
342 343 2.670509 GCAAGTGCAAAAGGATGAGCTC 60.671 50.000 6.82 6.82 41.59 4.09
343 344 2.555325 CAAGTGCAAAAGGATGAGCTCA 59.445 45.455 20.79 20.79 0.00 4.26
344 345 3.083122 AGTGCAAAAGGATGAGCTCAT 57.917 42.857 29.09 29.09 39.70 2.90
345 346 2.753452 AGTGCAAAAGGATGAGCTCATG 59.247 45.455 33.33 19.94 36.57 3.07
346 347 2.751259 GTGCAAAAGGATGAGCTCATGA 59.249 45.455 33.33 3.95 36.57 3.07
347 348 3.014623 TGCAAAAGGATGAGCTCATGAG 58.985 45.455 33.33 18.84 36.57 2.90
365 366 8.554835 CTCATGAGCATATCTTTGATCAGATT 57.445 34.615 10.38 0.00 44.40 2.40
366 367 8.549338 TCATGAGCATATCTTTGATCAGATTC 57.451 34.615 3.05 0.00 44.40 2.52
367 368 8.154856 TCATGAGCATATCTTTGATCAGATTCA 58.845 33.333 3.05 2.25 44.40 2.57
368 369 8.784043 CATGAGCATATCTTTGATCAGATTCAA 58.216 33.333 3.05 0.00 44.40 2.69
369 370 8.919777 TGAGCATATCTTTGATCAGATTCAAT 57.080 30.769 3.05 0.00 37.13 2.57
370 371 9.000486 TGAGCATATCTTTGATCAGATTCAATC 58.000 33.333 3.05 0.00 37.13 2.67
371 372 8.919777 AGCATATCTTTGATCAGATTCAATCA 57.080 30.769 0.00 0.00 35.64 2.57
372 373 8.784994 AGCATATCTTTGATCAGATTCAATCAC 58.215 33.333 0.00 0.00 35.64 3.06
373 374 8.784994 GCATATCTTTGATCAGATTCAATCACT 58.215 33.333 0.00 0.00 35.64 3.41
375 376 9.848710 ATATCTTTGATCAGATTCAATCACTGT 57.151 29.630 0.00 0.00 35.64 3.55
376 377 7.991084 TCTTTGATCAGATTCAATCACTGTT 57.009 32.000 0.00 0.00 35.64 3.16
377 378 8.037382 TCTTTGATCAGATTCAATCACTGTTC 57.963 34.615 0.00 0.00 35.64 3.18
378 379 6.748333 TTGATCAGATTCAATCACTGTTCC 57.252 37.500 0.00 0.00 31.83 3.62
379 380 6.058553 TGATCAGATTCAATCACTGTTCCT 57.941 37.500 0.00 0.00 32.66 3.36
380 381 7.186570 TGATCAGATTCAATCACTGTTCCTA 57.813 36.000 0.00 0.00 32.66 2.94
381 382 7.623630 TGATCAGATTCAATCACTGTTCCTAA 58.376 34.615 0.00 0.00 32.66 2.69
382 383 7.767659 TGATCAGATTCAATCACTGTTCCTAAG 59.232 37.037 0.00 0.00 32.66 2.18
383 384 5.877012 TCAGATTCAATCACTGTTCCTAAGC 59.123 40.000 0.00 0.00 33.93 3.09
384 385 5.879223 CAGATTCAATCACTGTTCCTAAGCT 59.121 40.000 0.00 0.00 0.00 3.74
385 386 5.879223 AGATTCAATCACTGTTCCTAAGCTG 59.121 40.000 0.00 0.00 0.00 4.24
386 387 4.890158 TCAATCACTGTTCCTAAGCTGA 57.110 40.909 0.00 0.00 0.00 4.26
387 388 5.426689 TCAATCACTGTTCCTAAGCTGAT 57.573 39.130 0.00 0.00 0.00 2.90
388 389 5.423015 TCAATCACTGTTCCTAAGCTGATC 58.577 41.667 0.00 0.00 0.00 2.92
389 390 3.510388 TCACTGTTCCTAAGCTGATCG 57.490 47.619 0.00 0.00 0.00 3.69
390 391 3.089284 TCACTGTTCCTAAGCTGATCGA 58.911 45.455 0.00 0.00 0.00 3.59
391 392 3.129462 TCACTGTTCCTAAGCTGATCGAG 59.871 47.826 0.00 0.00 0.00 4.04
419 420 8.762645 CATAATATCACTCTCATTAAGGGCCTA 58.237 37.037 6.41 0.00 0.00 3.93
427 428 5.837829 TCTCATTAAGGGCCTATTTGGTTT 58.162 37.500 6.41 0.00 38.35 3.27
439 440 7.064134 GGGCCTATTTGGTTTAAAAGAATTTCG 59.936 37.037 0.84 0.00 35.97 3.46
469 470 3.519510 TGTGGAGGATTCTGTTTCCTAGG 59.480 47.826 0.82 0.82 43.75 3.02
502 503 8.789881 TGTATAAACTTTGTTTTGTTCATCGG 57.210 30.769 0.94 0.00 0.00 4.18
503 504 8.622157 TGTATAAACTTTGTTTTGTTCATCGGA 58.378 29.630 0.94 0.00 0.00 4.55
504 505 9.620660 GTATAAACTTTGTTTTGTTCATCGGAT 57.379 29.630 0.94 0.00 0.00 4.18
579 582 6.748132 TGAGTCCAACCTCATTGAAAATTTC 58.252 36.000 0.00 0.00 41.23 2.17
581 584 5.012046 AGTCCAACCTCATTGAAAATTTCCC 59.988 40.000 3.00 0.00 41.23 3.97
591 594 8.434589 TCATTGAAAATTTCCCTGTATTTCCT 57.565 30.769 3.00 0.00 30.80 3.36
608 618 2.265367 TCCTTCATGACAAGTAGGGCA 58.735 47.619 9.94 0.00 0.00 5.36
612 622 3.548745 TCATGACAAGTAGGGCATCTG 57.451 47.619 0.00 0.00 0.00 2.90
615 625 3.057969 TGACAAGTAGGGCATCTGTTG 57.942 47.619 0.00 0.00 0.00 3.33
616 626 2.371841 TGACAAGTAGGGCATCTGTTGT 59.628 45.455 7.89 7.89 36.96 3.32
617 627 3.580895 TGACAAGTAGGGCATCTGTTGTA 59.419 43.478 8.05 0.00 35.45 2.41
618 628 4.184629 GACAAGTAGGGCATCTGTTGTAG 58.815 47.826 8.05 0.00 35.45 2.74
690 1237 8.394971 TCATAATTCTTTTCTCAGTTCTTGCA 57.605 30.769 0.00 0.00 0.00 4.08
716 1292 5.528043 TTTAACATTGCCATGACAGTTGT 57.472 34.783 4.52 0.00 34.11 3.32
720 1296 3.638160 ACATTGCCATGACAGTTGTTTCT 59.362 39.130 4.52 0.00 34.11 2.52
721 1297 3.988379 TTGCCATGACAGTTGTTTCTC 57.012 42.857 0.00 0.00 0.00 2.87
748 1327 8.859517 AGTGATCTTTTACGCTCTAGTATTTC 57.140 34.615 0.00 0.00 0.00 2.17
867 1448 3.788333 AAATGGTGCATCGATTTGAGG 57.212 42.857 0.00 0.00 34.18 3.86
977 1558 5.120479 TCCCTCCTCTATATATACACCCCA 58.880 45.833 0.00 0.00 0.00 4.96
1025 1606 1.545582 CAACCGAAGCCAACCATCAAT 59.454 47.619 0.00 0.00 0.00 2.57
1033 1614 1.179152 CCAACCATCAATCAGCAGCA 58.821 50.000 0.00 0.00 0.00 4.41
1245 1833 1.799121 GTCCTTCGCGGTGTACGTC 60.799 63.158 6.13 0.00 46.52 4.34
1531 2145 2.364970 CTCCCTCGCTCTGAAGAATGAT 59.635 50.000 0.00 0.00 0.00 2.45
1646 2261 1.499007 AGAAAGGGGAAGAGGTTGCAA 59.501 47.619 0.00 0.00 0.00 4.08
1673 2288 9.436957 CTAGTTGGATCTGTAATTTGTACAACT 57.563 33.333 8.07 0.00 45.32 3.16
1715 2341 6.210385 TGCAAAAACTTAGGCATTTGATCCTA 59.790 34.615 9.62 0.00 35.34 2.94
1717 2343 7.436376 GCAAAAACTTAGGCATTTGATCCTATC 59.564 37.037 9.62 0.00 35.11 2.08
1720 2346 5.312079 ACTTAGGCATTTGATCCTATCTGC 58.688 41.667 0.00 0.00 35.11 4.26
1867 2518 2.257974 TCACTTCACGCAGACGATAC 57.742 50.000 0.00 0.00 43.93 2.24
1870 2521 1.135373 ACTTCACGCAGACGATACCAG 60.135 52.381 0.00 0.00 43.93 4.00
1876 2527 0.882042 GCAGACGATACCAGCCCATG 60.882 60.000 0.00 0.00 0.00 3.66
1926 2577 0.737715 CGGCAGTAGGTCACAAGAGC 60.738 60.000 0.00 0.00 42.53 4.09
1931 2582 1.961394 AGTAGGTCACAAGAGCGTTGA 59.039 47.619 8.64 0.00 46.62 3.18
1940 2591 3.003689 CACAAGAGCGTTGAGGAAAATGT 59.996 43.478 8.64 0.00 0.00 2.71
2055 2710 9.982651 GAGTTGCTTATTATCTACTACATCCAA 57.017 33.333 0.00 0.00 0.00 3.53
2062 2717 2.656002 TCTACTACATCCAAGCTCGCT 58.344 47.619 0.00 0.00 0.00 4.93
2199 2859 5.440234 AATCAGCATCTTCTGAATCATGC 57.560 39.130 19.42 19.42 45.17 4.06
2227 2887 1.279271 ACCTCACATAGTGTCAAGGCC 59.721 52.381 0.00 0.00 35.03 5.19
2229 2889 2.419297 CCTCACATAGTGTCAAGGCCTC 60.419 54.545 5.23 0.00 34.79 4.70
2421 3101 2.287009 GGGATCGATCGGTTTCATTTGC 60.287 50.000 18.81 0.69 0.00 3.68
2527 3207 4.168871 TCTGATGTAGATCTTCCTCCAGGA 59.831 45.833 0.00 0.00 43.73 3.86
2528 3208 4.478203 TGATGTAGATCTTCCTCCAGGAG 58.522 47.826 9.90 9.90 46.36 3.69
2529 3209 9.832174 ATCTGATGTAGATCTTCCTCCAGGAGG 62.832 48.148 28.42 28.42 45.48 4.30
2537 3217 3.566130 CCTCCAGGAGGCTTTTGAG 57.434 57.895 23.54 0.00 43.29 3.02
2538 3218 0.679321 CCTCCAGGAGGCTTTTGAGC 60.679 60.000 23.54 0.00 43.29 4.26
2539 3219 1.003355 TCCAGGAGGCTTTTGAGCG 60.003 57.895 0.00 0.00 35.24 5.03
2540 3220 2.694760 CCAGGAGGCTTTTGAGCGC 61.695 63.158 0.00 0.00 35.24 5.92
2541 3221 2.743928 AGGAGGCTTTTGAGCGCG 60.744 61.111 0.00 0.00 35.24 6.86
2542 3222 2.742372 GGAGGCTTTTGAGCGCGA 60.742 61.111 12.10 0.00 35.24 5.87
2543 3223 2.744768 GGAGGCTTTTGAGCGCGAG 61.745 63.158 12.10 0.00 35.24 5.03
2544 3224 2.029844 GAGGCTTTTGAGCGCGAGT 61.030 57.895 12.10 0.00 35.24 4.18
2545 3225 1.569479 GAGGCTTTTGAGCGCGAGTT 61.569 55.000 12.10 0.00 35.24 3.01
2546 3226 1.441016 GGCTTTTGAGCGCGAGTTG 60.441 57.895 12.10 0.00 35.24 3.16
2547 3227 2.077198 GCTTTTGAGCGCGAGTTGC 61.077 57.895 12.10 0.00 41.47 4.17
2548 3228 1.441016 CTTTTGAGCGCGAGTTGCC 60.441 57.895 12.10 0.00 42.08 4.52
2549 3229 1.845809 CTTTTGAGCGCGAGTTGCCT 61.846 55.000 12.10 0.00 42.08 4.75
2550 3230 2.116736 TTTTGAGCGCGAGTTGCCTG 62.117 55.000 12.10 0.00 42.08 4.85
2551 3231 3.807631 TTGAGCGCGAGTTGCCTGT 62.808 57.895 12.10 0.00 42.08 4.00
2552 3232 3.044305 GAGCGCGAGTTGCCTGTT 61.044 61.111 12.10 0.00 42.08 3.16
2553 3233 2.591715 AGCGCGAGTTGCCTGTTT 60.592 55.556 12.10 0.00 42.08 2.83
2554 3234 2.117941 GAGCGCGAGTTGCCTGTTTT 62.118 55.000 12.10 0.00 42.08 2.43
2555 3235 2.010817 GCGCGAGTTGCCTGTTTTG 61.011 57.895 12.10 0.00 42.08 2.44
2556 3236 1.370414 CGCGAGTTGCCTGTTTTGG 60.370 57.895 0.00 0.00 42.08 3.28
2557 3237 1.007387 GCGAGTTGCCTGTTTTGGG 60.007 57.895 0.00 0.00 37.76 4.12
2558 3238 1.659794 CGAGTTGCCTGTTTTGGGG 59.340 57.895 0.00 0.00 0.00 4.96
2559 3239 1.106944 CGAGTTGCCTGTTTTGGGGT 61.107 55.000 0.00 0.00 0.00 4.95
2560 3240 1.119684 GAGTTGCCTGTTTTGGGGTT 58.880 50.000 0.00 0.00 0.00 4.11
2561 3241 1.484653 GAGTTGCCTGTTTTGGGGTTT 59.515 47.619 0.00 0.00 0.00 3.27
2562 3242 1.209261 AGTTGCCTGTTTTGGGGTTTG 59.791 47.619 0.00 0.00 0.00 2.93
2563 3243 1.208293 GTTGCCTGTTTTGGGGTTTGA 59.792 47.619 0.00 0.00 0.00 2.69
2564 3244 1.118838 TGCCTGTTTTGGGGTTTGAG 58.881 50.000 0.00 0.00 0.00 3.02
2565 3245 1.119684 GCCTGTTTTGGGGTTTGAGT 58.880 50.000 0.00 0.00 0.00 3.41
2566 3246 1.202521 GCCTGTTTTGGGGTTTGAGTG 60.203 52.381 0.00 0.00 0.00 3.51
2567 3247 2.107366 CCTGTTTTGGGGTTTGAGTGT 58.893 47.619 0.00 0.00 0.00 3.55
2568 3248 2.159114 CCTGTTTTGGGGTTTGAGTGTG 60.159 50.000 0.00 0.00 0.00 3.82
2569 3249 2.495669 CTGTTTTGGGGTTTGAGTGTGT 59.504 45.455 0.00 0.00 0.00 3.72
2570 3250 2.900546 TGTTTTGGGGTTTGAGTGTGTT 59.099 40.909 0.00 0.00 0.00 3.32
2571 3251 3.258228 GTTTTGGGGTTTGAGTGTGTTG 58.742 45.455 0.00 0.00 0.00 3.33
2572 3252 2.223803 TTGGGGTTTGAGTGTGTTGT 57.776 45.000 0.00 0.00 0.00 3.32
2573 3253 1.468985 TGGGGTTTGAGTGTGTTGTG 58.531 50.000 0.00 0.00 0.00 3.33
2574 3254 0.744281 GGGGTTTGAGTGTGTTGTGG 59.256 55.000 0.00 0.00 0.00 4.17
2575 3255 1.683629 GGGGTTTGAGTGTGTTGTGGA 60.684 52.381 0.00 0.00 0.00 4.02
2576 3256 2.306847 GGGTTTGAGTGTGTTGTGGAT 58.693 47.619 0.00 0.00 0.00 3.41
2577 3257 3.482436 GGGTTTGAGTGTGTTGTGGATA 58.518 45.455 0.00 0.00 0.00 2.59
2578 3258 3.252458 GGGTTTGAGTGTGTTGTGGATAC 59.748 47.826 0.00 0.00 0.00 2.24
2579 3259 3.252458 GGTTTGAGTGTGTTGTGGATACC 59.748 47.826 0.00 0.00 0.00 2.73
2580 3260 3.847671 TTGAGTGTGTTGTGGATACCA 57.152 42.857 0.00 0.00 0.00 3.25
2581 3261 4.365514 TTGAGTGTGTTGTGGATACCAT 57.634 40.909 0.00 0.00 35.28 3.55
2582 3262 4.365514 TGAGTGTGTTGTGGATACCATT 57.634 40.909 0.00 0.00 35.28 3.16
2583 3263 4.323417 TGAGTGTGTTGTGGATACCATTC 58.677 43.478 0.00 0.00 35.28 2.67
2584 3264 3.334691 AGTGTGTTGTGGATACCATTCG 58.665 45.455 0.00 0.00 35.28 3.34
2585 3265 3.071479 GTGTGTTGTGGATACCATTCGT 58.929 45.455 0.00 0.00 35.28 3.85
2586 3266 3.070748 TGTGTTGTGGATACCATTCGTG 58.929 45.455 0.00 0.00 35.28 4.35
2587 3267 2.418628 GTGTTGTGGATACCATTCGTGG 59.581 50.000 0.00 0.00 35.28 4.94
2588 3268 2.014128 GTTGTGGATACCATTCGTGGG 58.986 52.381 0.00 0.00 35.28 4.61
2589 3269 0.544223 TGTGGATACCATTCGTGGGG 59.456 55.000 0.00 0.00 35.28 4.96
2590 3270 0.179029 GTGGATACCATTCGTGGGGG 60.179 60.000 0.00 0.00 35.28 5.40
2591 3271 0.622154 TGGATACCATTCGTGGGGGT 60.622 55.000 0.00 0.00 38.70 4.95
2592 3272 0.108019 GGATACCATTCGTGGGGGTC 59.892 60.000 0.00 0.00 36.14 4.46
2593 3273 1.129058 GATACCATTCGTGGGGGTCT 58.871 55.000 0.00 0.00 36.14 3.85
2594 3274 1.489230 GATACCATTCGTGGGGGTCTT 59.511 52.381 0.00 0.00 36.14 3.01
2595 3275 0.616371 TACCATTCGTGGGGGTCTTG 59.384 55.000 0.00 0.00 36.14 3.02
2596 3276 1.378514 CCATTCGTGGGGGTCTTGG 60.379 63.158 0.00 0.00 0.00 3.61
2597 3277 1.378514 CATTCGTGGGGGTCTTGGG 60.379 63.158 0.00 0.00 0.00 4.12
2598 3278 2.612493 ATTCGTGGGGGTCTTGGGG 61.612 63.158 0.00 0.00 0.00 4.96
2601 3281 3.190391 GTGGGGGTCTTGGGGGTT 61.190 66.667 0.00 0.00 0.00 4.11
2602 3282 2.861974 TGGGGGTCTTGGGGGTTC 60.862 66.667 0.00 0.00 0.00 3.62
2603 3283 2.534533 GGGGGTCTTGGGGGTTCT 60.535 66.667 0.00 0.00 0.00 3.01
2604 3284 2.763902 GGGGTCTTGGGGGTTCTG 59.236 66.667 0.00 0.00 0.00 3.02
2605 3285 2.035783 GGGTCTTGGGGGTTCTGC 59.964 66.667 0.00 0.00 0.00 4.26
2606 3286 2.359975 GGTCTTGGGGGTTCTGCG 60.360 66.667 0.00 0.00 0.00 5.18
2607 3287 2.747686 GTCTTGGGGGTTCTGCGA 59.252 61.111 0.00 0.00 0.00 5.10
2608 3288 1.299976 GTCTTGGGGGTTCTGCGAT 59.700 57.895 0.00 0.00 0.00 4.58
2609 3289 0.744771 GTCTTGGGGGTTCTGCGATC 60.745 60.000 0.00 0.00 0.00 3.69
2610 3290 0.909610 TCTTGGGGGTTCTGCGATCT 60.910 55.000 0.00 0.00 0.00 2.75
2611 3291 0.462759 CTTGGGGGTTCTGCGATCTC 60.463 60.000 0.00 0.00 0.00 2.75
2612 3292 2.107141 GGGGGTTCTGCGATCTCG 59.893 66.667 0.00 0.00 43.27 4.04
2613 3293 2.423898 GGGGGTTCTGCGATCTCGA 61.424 63.158 3.33 0.00 43.02 4.04
2614 3294 1.742768 GGGGTTCTGCGATCTCGAT 59.257 57.895 3.33 0.00 43.02 3.59
2615 3295 0.319125 GGGGTTCTGCGATCTCGATC 60.319 60.000 3.33 0.00 43.02 3.69
2616 3296 0.671251 GGGTTCTGCGATCTCGATCT 59.329 55.000 3.33 0.00 43.02 2.75
2617 3297 1.601663 GGGTTCTGCGATCTCGATCTG 60.602 57.143 3.33 1.13 43.02 2.90
2618 3298 1.601663 GGTTCTGCGATCTCGATCTGG 60.602 57.143 3.33 0.00 43.02 3.86
2619 3299 0.670706 TTCTGCGATCTCGATCTGGG 59.329 55.000 3.33 0.00 43.02 4.45
2620 3300 1.175347 TCTGCGATCTCGATCTGGGG 61.175 60.000 3.33 0.00 43.02 4.96
2621 3301 1.152756 TGCGATCTCGATCTGGGGA 60.153 57.895 3.33 0.00 43.02 4.81
2622 3302 1.175347 TGCGATCTCGATCTGGGGAG 61.175 60.000 3.33 0.00 43.02 4.30
2623 3303 0.891449 GCGATCTCGATCTGGGGAGA 60.891 60.000 3.33 1.21 42.96 3.71
2625 3305 1.472082 CGATCTCGATCTGGGGAGATG 59.528 57.143 13.56 5.14 46.97 2.90
2626 3306 2.801483 GATCTCGATCTGGGGAGATGA 58.199 52.381 13.56 0.00 46.97 2.92
2627 3307 2.284754 TCTCGATCTGGGGAGATGAG 57.715 55.000 0.00 0.00 34.52 2.90
2628 3308 1.202989 TCTCGATCTGGGGAGATGAGG 60.203 57.143 0.00 0.00 34.52 3.86
2629 3309 0.853530 TCGATCTGGGGAGATGAGGA 59.146 55.000 0.00 0.00 0.00 3.71
2630 3310 1.202989 TCGATCTGGGGAGATGAGGAG 60.203 57.143 0.00 0.00 0.00 3.69
2631 3311 1.643310 GATCTGGGGAGATGAGGAGG 58.357 60.000 0.00 0.00 0.00 4.30
2632 3312 0.948050 ATCTGGGGAGATGAGGAGGT 59.052 55.000 0.00 0.00 0.00 3.85
2633 3313 0.031716 TCTGGGGAGATGAGGAGGTG 60.032 60.000 0.00 0.00 0.00 4.00
2634 3314 0.031716 CTGGGGAGATGAGGAGGTGA 60.032 60.000 0.00 0.00 0.00 4.02
2635 3315 0.031716 TGGGGAGATGAGGAGGTGAG 60.032 60.000 0.00 0.00 0.00 3.51
2636 3316 0.031616 GGGGAGATGAGGAGGTGAGT 60.032 60.000 0.00 0.00 0.00 3.41
2637 3317 1.408969 GGGAGATGAGGAGGTGAGTC 58.591 60.000 0.00 0.00 0.00 3.36
2638 3318 1.028905 GGAGATGAGGAGGTGAGTCG 58.971 60.000 0.00 0.00 0.00 4.18
2639 3319 1.028905 GAGATGAGGAGGTGAGTCGG 58.971 60.000 0.00 0.00 0.00 4.79
2640 3320 1.040339 AGATGAGGAGGTGAGTCGGC 61.040 60.000 0.00 0.00 0.00 5.54
2641 3321 1.305297 ATGAGGAGGTGAGTCGGCA 60.305 57.895 0.00 0.00 0.00 5.69
2642 3322 1.326213 ATGAGGAGGTGAGTCGGCAG 61.326 60.000 0.00 0.00 0.00 4.85
2643 3323 2.681778 AGGAGGTGAGTCGGCAGG 60.682 66.667 0.00 0.00 0.00 4.85
2644 3324 2.997897 GGAGGTGAGTCGGCAGGT 60.998 66.667 0.00 0.00 0.00 4.00
2645 3325 2.262915 GAGGTGAGTCGGCAGGTG 59.737 66.667 0.00 0.00 0.00 4.00
2646 3326 3.302347 GAGGTGAGTCGGCAGGTGG 62.302 68.421 0.00 0.00 0.00 4.61
2660 3340 2.936032 GTGGCCACTCCCCCTCTT 60.936 66.667 29.12 0.00 0.00 2.85
2661 3341 2.935481 TGGCCACTCCCCCTCTTG 60.935 66.667 0.00 0.00 0.00 3.02
2662 3342 4.432741 GGCCACTCCCCCTCTTGC 62.433 72.222 0.00 0.00 0.00 4.01
2663 3343 3.334054 GCCACTCCCCCTCTTGCT 61.334 66.667 0.00 0.00 0.00 3.91
2664 3344 2.993853 CCACTCCCCCTCTTGCTC 59.006 66.667 0.00 0.00 0.00 4.26
2665 3345 1.920325 CCACTCCCCCTCTTGCTCA 60.920 63.158 0.00 0.00 0.00 4.26
2666 3346 1.601171 CACTCCCCCTCTTGCTCAG 59.399 63.158 0.00 0.00 0.00 3.35
2667 3347 2.297129 ACTCCCCCTCTTGCTCAGC 61.297 63.158 0.00 0.00 0.00 4.26
2668 3348 2.203983 TCCCCCTCTTGCTCAGCA 60.204 61.111 0.00 0.00 36.47 4.41
2669 3349 2.045536 CCCCCTCTTGCTCAGCAC 60.046 66.667 0.00 0.00 38.71 4.40
2670 3350 2.752358 CCCCTCTTGCTCAGCACA 59.248 61.111 0.00 0.00 38.71 4.57
2671 3351 1.673665 CCCCTCTTGCTCAGCACAC 60.674 63.158 0.00 0.00 38.71 3.82
2672 3352 2.031516 CCCTCTTGCTCAGCACACG 61.032 63.158 0.00 0.00 38.71 4.49
2673 3353 2.031516 CCTCTTGCTCAGCACACGG 61.032 63.158 0.00 0.00 38.71 4.94
2674 3354 1.301244 CTCTTGCTCAGCACACGGT 60.301 57.895 0.00 0.00 38.71 4.83
2675 3355 0.038251 CTCTTGCTCAGCACACGGTA 60.038 55.000 0.00 0.00 38.71 4.02
2676 3356 0.319555 TCTTGCTCAGCACACGGTAC 60.320 55.000 0.00 0.00 38.71 3.34
2677 3357 0.599991 CTTGCTCAGCACACGGTACA 60.600 55.000 0.00 0.00 38.71 2.90
2678 3358 0.034756 TTGCTCAGCACACGGTACAT 59.965 50.000 0.00 0.00 38.71 2.29
2679 3359 0.389817 TGCTCAGCACACGGTACATC 60.390 55.000 0.00 0.00 31.71 3.06
2680 3360 1.084370 GCTCAGCACACGGTACATCC 61.084 60.000 0.00 0.00 0.00 3.51
2681 3361 0.532573 CTCAGCACACGGTACATCCT 59.467 55.000 0.00 0.00 0.00 3.24
2682 3362 0.530744 TCAGCACACGGTACATCCTC 59.469 55.000 0.00 0.00 0.00 3.71
2683 3363 0.246360 CAGCACACGGTACATCCTCA 59.754 55.000 0.00 0.00 0.00 3.86
2684 3364 0.532573 AGCACACGGTACATCCTCAG 59.467 55.000 0.00 0.00 0.00 3.35
2685 3365 0.460284 GCACACGGTACATCCTCAGG 60.460 60.000 0.00 0.00 0.00 3.86
2686 3366 1.182667 CACACGGTACATCCTCAGGA 58.817 55.000 0.00 0.00 35.55 3.86
2687 3367 1.135139 CACACGGTACATCCTCAGGAG 59.865 57.143 0.00 0.00 34.05 3.69
2690 3370 0.747255 CGGTACATCCTCAGGAGGTG 59.253 60.000 21.65 7.04 46.55 4.00
2691 3371 1.685180 CGGTACATCCTCAGGAGGTGA 60.685 57.143 21.65 2.51 46.55 4.02
2692 3372 1.757699 GGTACATCCTCAGGAGGTGAC 59.242 57.143 21.65 13.98 46.55 3.67
2693 3373 1.405821 GTACATCCTCAGGAGGTGACG 59.594 57.143 21.65 3.62 46.55 4.35
2694 3374 1.608717 ACATCCTCAGGAGGTGACGC 61.609 60.000 11.08 0.00 45.37 5.19
2695 3375 4.866366 TACATCCTCAGGAGGTGACGCA 62.866 54.545 21.65 0.00 46.55 5.24
2696 3376 2.575993 CCTCAGGAGGTGACGCAG 59.424 66.667 7.19 0.00 43.61 5.18
2697 3377 2.125753 CTCAGGAGGTGACGCAGC 60.126 66.667 1.54 1.54 0.00 5.25
2698 3378 2.601666 TCAGGAGGTGACGCAGCT 60.602 61.111 10.57 10.57 45.28 4.24
2699 3379 2.164865 CTCAGGAGGTGACGCAGCTT 62.165 60.000 11.75 0.00 42.53 3.74
2700 3380 2.031516 CAGGAGGTGACGCAGCTTG 61.032 63.158 11.75 5.13 42.53 4.01
2701 3381 2.743928 GGAGGTGACGCAGCTTGG 60.744 66.667 11.75 0.00 42.53 3.61
2702 3382 3.426568 GAGGTGACGCAGCTTGGC 61.427 66.667 11.75 0.00 42.53 4.52
2724 3404 4.135153 CCGGCTCGTCAGGTGGAG 62.135 72.222 0.00 0.00 0.00 3.86
2728 3408 3.775654 CTCGTCAGGTGGAGCCCC 61.776 72.222 0.00 0.00 38.26 5.80
2764 3444 2.645838 GGATGCTCCCATTCTGCTAA 57.354 50.000 0.00 0.00 0.00 3.09
2765 3445 2.502295 GGATGCTCCCATTCTGCTAAG 58.498 52.381 0.00 0.00 0.00 2.18
2766 3446 2.502295 GATGCTCCCATTCTGCTAAGG 58.498 52.381 0.00 0.00 0.00 2.69
2767 3447 1.583556 TGCTCCCATTCTGCTAAGGA 58.416 50.000 0.00 0.00 0.00 3.36
2768 3448 1.915489 TGCTCCCATTCTGCTAAGGAA 59.085 47.619 0.00 0.00 0.00 3.36
2769 3449 2.092753 TGCTCCCATTCTGCTAAGGAAG 60.093 50.000 0.00 0.00 0.00 3.46
2770 3450 2.747799 GCTCCCATTCTGCTAAGGAAGG 60.748 54.545 0.00 0.00 0.00 3.46
2771 3451 1.846439 TCCCATTCTGCTAAGGAAGGG 59.154 52.381 0.00 0.00 42.22 3.95
2772 3452 2.355010 CCATTCTGCTAAGGAAGGGG 57.645 55.000 0.00 0.00 39.89 4.79
2773 3453 1.846439 CCATTCTGCTAAGGAAGGGGA 59.154 52.381 0.00 0.00 39.89 4.81
2774 3454 2.422093 CCATTCTGCTAAGGAAGGGGAC 60.422 54.545 0.00 0.00 39.89 4.46
2776 3456 1.867363 TCTGCTAAGGAAGGGGACTC 58.133 55.000 0.00 0.00 42.68 3.36
2777 3457 0.461961 CTGCTAAGGAAGGGGACTCG 59.538 60.000 0.00 0.00 42.68 4.18
2778 3458 0.976073 TGCTAAGGAAGGGGACTCGG 60.976 60.000 0.00 0.00 42.68 4.63
2779 3459 1.687297 GCTAAGGAAGGGGACTCGGG 61.687 65.000 0.00 0.00 42.68 5.14
2780 3460 1.002533 TAAGGAAGGGGACTCGGGG 59.997 63.158 0.00 0.00 42.68 5.73
2783 3463 3.787001 GAAGGGGACTCGGGGCAG 61.787 72.222 0.00 0.00 42.68 4.85
2797 3477 4.459089 GCAGGAGGCTCCCGTGTC 62.459 72.222 29.62 14.10 37.19 3.67
2798 3478 3.775654 CAGGAGGCTCCCGTGTCC 61.776 72.222 29.62 4.03 37.19 4.02
2799 3479 3.999285 AGGAGGCTCCCGTGTCCT 61.999 66.667 29.62 6.66 37.19 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.389603 TCTACGAAAAATTATAATCGCGGTTTT 58.610 29.630 11.19 4.79 38.80 2.43
1 2 7.908230 TCTACGAAAAATTATAATCGCGGTTT 58.092 30.769 11.19 5.06 38.80 3.27
2 3 7.467557 TCTACGAAAAATTATAATCGCGGTT 57.532 32.000 10.59 10.59 38.80 4.44
3 4 7.467557 TTCTACGAAAAATTATAATCGCGGT 57.532 32.000 6.13 0.00 38.80 5.68
4 5 8.667204 GTTTTCTACGAAAAATTATAATCGCGG 58.333 33.333 6.13 0.00 38.80 6.46
5 6 9.201424 TGTTTTCTACGAAAAATTATAATCGCG 57.799 29.630 0.00 0.00 38.80 5.87
49 50 9.506018 ACCTACATTAGTAAATTACACCGTTTT 57.494 29.630 5.89 0.00 0.00 2.43
50 51 9.506018 AACCTACATTAGTAAATTACACCGTTT 57.494 29.630 5.89 0.00 0.00 3.60
51 52 9.506018 AAACCTACATTAGTAAATTACACCGTT 57.494 29.630 5.89 0.00 0.00 4.44
52 53 9.506018 AAAACCTACATTAGTAAATTACACCGT 57.494 29.630 5.89 0.27 0.00 4.83
64 65 8.867097 TCTTCTGTGTCTAAAACCTACATTAGT 58.133 33.333 0.00 0.00 32.27 2.24
65 66 9.360093 CTCTTCTGTGTCTAAAACCTACATTAG 57.640 37.037 0.00 0.00 0.00 1.73
66 67 8.867097 ACTCTTCTGTGTCTAAAACCTACATTA 58.133 33.333 0.00 0.00 0.00 1.90
67 68 7.736893 ACTCTTCTGTGTCTAAAACCTACATT 58.263 34.615 0.00 0.00 0.00 2.71
68 69 7.233757 AGACTCTTCTGTGTCTAAAACCTACAT 59.766 37.037 0.00 0.00 42.89 2.29
69 70 6.550108 AGACTCTTCTGTGTCTAAAACCTACA 59.450 38.462 0.00 0.00 42.89 2.74
70 71 6.983984 AGACTCTTCTGTGTCTAAAACCTAC 58.016 40.000 0.00 0.00 42.89 3.18
71 72 6.776116 TGAGACTCTTCTGTGTCTAAAACCTA 59.224 38.462 3.68 0.00 44.17 3.08
72 73 5.598830 TGAGACTCTTCTGTGTCTAAAACCT 59.401 40.000 3.68 0.00 44.17 3.50
73 74 5.844004 TGAGACTCTTCTGTGTCTAAAACC 58.156 41.667 3.68 0.00 44.17 3.27
74 75 7.772332 TTTGAGACTCTTCTGTGTCTAAAAC 57.228 36.000 3.68 0.00 44.17 2.43
75 76 8.964476 AATTTGAGACTCTTCTGTGTCTAAAA 57.036 30.769 3.68 11.02 44.51 1.52
77 78 9.477484 GTTAATTTGAGACTCTTCTGTGTCTAA 57.523 33.333 3.68 0.00 44.17 2.10
78 79 7.808381 CGTTAATTTGAGACTCTTCTGTGTCTA 59.192 37.037 3.68 0.00 44.17 2.59
79 80 6.642950 CGTTAATTTGAGACTCTTCTGTGTCT 59.357 38.462 3.68 0.00 46.01 3.41
80 81 6.421202 ACGTTAATTTGAGACTCTTCTGTGTC 59.579 38.462 3.68 0.00 37.07 3.67
81 82 6.281405 ACGTTAATTTGAGACTCTTCTGTGT 58.719 36.000 3.68 0.00 29.47 3.72
82 83 6.771188 ACGTTAATTTGAGACTCTTCTGTG 57.229 37.500 3.68 0.00 29.47 3.66
83 84 7.431249 TGTACGTTAATTTGAGACTCTTCTGT 58.569 34.615 3.68 0.00 29.47 3.41
84 85 7.869016 TGTACGTTAATTTGAGACTCTTCTG 57.131 36.000 3.68 0.00 29.47 3.02
85 86 8.142551 AGTTGTACGTTAATTTGAGACTCTTCT 58.857 33.333 3.68 0.00 33.37 2.85
86 87 8.295569 AGTTGTACGTTAATTTGAGACTCTTC 57.704 34.615 3.68 0.00 0.00 2.87
87 88 9.924650 ATAGTTGTACGTTAATTTGAGACTCTT 57.075 29.630 3.68 0.00 0.00 2.85
88 89 9.355215 CATAGTTGTACGTTAATTTGAGACTCT 57.645 33.333 3.68 0.00 0.00 3.24
89 90 9.350357 TCATAGTTGTACGTTAATTTGAGACTC 57.650 33.333 0.00 0.00 0.00 3.36
90 91 9.871238 ATCATAGTTGTACGTTAATTTGAGACT 57.129 29.630 0.00 0.00 0.00 3.24
92 93 9.863845 TGATCATAGTTGTACGTTAATTTGAGA 57.136 29.630 0.00 0.00 0.00 3.27
95 96 9.650371 CCATGATCATAGTTGTACGTTAATTTG 57.350 33.333 8.15 0.00 0.00 2.32
96 97 8.836413 CCCATGATCATAGTTGTACGTTAATTT 58.164 33.333 8.15 0.00 0.00 1.82
97 98 7.041372 GCCCATGATCATAGTTGTACGTTAATT 60.041 37.037 8.15 0.00 0.00 1.40
98 99 6.426937 GCCCATGATCATAGTTGTACGTTAAT 59.573 38.462 8.15 0.00 0.00 1.40
99 100 5.756347 GCCCATGATCATAGTTGTACGTTAA 59.244 40.000 8.15 0.00 0.00 2.01
100 101 5.294356 GCCCATGATCATAGTTGTACGTTA 58.706 41.667 8.15 0.00 0.00 3.18
101 102 4.127171 GCCCATGATCATAGTTGTACGTT 58.873 43.478 8.15 0.00 0.00 3.99
102 103 3.494398 GGCCCATGATCATAGTTGTACGT 60.494 47.826 8.15 0.00 0.00 3.57
103 104 3.067106 GGCCCATGATCATAGTTGTACG 58.933 50.000 8.15 0.00 0.00 3.67
104 105 3.181445 TGGGCCCATGATCATAGTTGTAC 60.181 47.826 24.45 0.00 0.00 2.90
105 106 3.052329 TGGGCCCATGATCATAGTTGTA 58.948 45.455 24.45 0.00 0.00 2.41
106 107 1.852309 TGGGCCCATGATCATAGTTGT 59.148 47.619 24.45 0.00 0.00 3.32
107 108 2.662535 TGGGCCCATGATCATAGTTG 57.337 50.000 24.45 0.00 0.00 3.16
108 109 3.503365 CAATGGGCCCATGATCATAGTT 58.497 45.455 38.06 17.03 36.68 2.24
109 110 2.820485 GCAATGGGCCCATGATCATAGT 60.820 50.000 38.06 17.06 36.68 2.12
110 111 1.822990 GCAATGGGCCCATGATCATAG 59.177 52.381 38.06 20.57 36.68 2.23
111 112 1.430075 AGCAATGGGCCCATGATCATA 59.570 47.619 38.06 7.47 46.50 2.15
112 113 0.190069 AGCAATGGGCCCATGATCAT 59.810 50.000 38.06 19.52 46.50 2.45
113 114 0.031917 AAGCAATGGGCCCATGATCA 60.032 50.000 38.06 9.30 46.50 2.92
114 115 1.125633 AAAGCAATGGGCCCATGATC 58.874 50.000 38.06 26.73 46.50 2.92
115 116 1.487558 GAAAAGCAATGGGCCCATGAT 59.512 47.619 38.06 25.81 46.50 2.45
116 117 0.903942 GAAAAGCAATGGGCCCATGA 59.096 50.000 38.06 11.15 46.50 3.07
117 118 0.614294 TGAAAAGCAATGGGCCCATG 59.386 50.000 38.06 29.07 46.50 3.66
118 119 1.587066 ATGAAAAGCAATGGGCCCAT 58.413 45.000 32.75 32.75 46.50 4.00
119 120 1.830477 GTATGAAAAGCAATGGGCCCA 59.170 47.619 30.92 30.92 46.50 5.36
120 121 1.138859 GGTATGAAAAGCAATGGGCCC 59.861 52.381 17.59 17.59 46.50 5.80
121 122 1.830477 TGGTATGAAAAGCAATGGGCC 59.170 47.619 0.00 0.00 46.50 5.80
122 123 3.608316 TTGGTATGAAAAGCAATGGGC 57.392 42.857 0.00 0.00 45.30 5.36
123 124 8.641541 AGTATATTTGGTATGAAAAGCAATGGG 58.358 33.333 0.00 0.00 36.78 4.00
169 170 8.220755 ACTATGACCGTGCAATATGTATTTTT 57.779 30.769 0.00 0.00 0.00 1.94
170 171 7.801716 ACTATGACCGTGCAATATGTATTTT 57.198 32.000 0.00 0.00 0.00 1.82
171 172 7.801716 AACTATGACCGTGCAATATGTATTT 57.198 32.000 0.00 0.00 0.00 1.40
172 173 8.896320 TTAACTATGACCGTGCAATATGTATT 57.104 30.769 0.00 0.00 0.00 1.89
173 174 8.896320 TTTAACTATGACCGTGCAATATGTAT 57.104 30.769 0.00 0.00 0.00 2.29
174 175 8.719560 TTTTAACTATGACCGTGCAATATGTA 57.280 30.769 0.00 0.00 0.00 2.29
175 176 7.618502 TTTTAACTATGACCGTGCAATATGT 57.381 32.000 0.00 0.00 0.00 2.29
202 203 9.621629 TCTGATTTCCTACAAAAGTTTCAAGTA 57.378 29.630 0.00 0.00 0.00 2.24
203 204 8.519799 TCTGATTTCCTACAAAAGTTTCAAGT 57.480 30.769 0.00 0.00 0.00 3.16
204 205 9.455847 CTTCTGATTTCCTACAAAAGTTTCAAG 57.544 33.333 0.00 0.00 0.00 3.02
205 206 8.966868 ACTTCTGATTTCCTACAAAAGTTTCAA 58.033 29.630 0.00 0.00 0.00 2.69
206 207 8.519799 ACTTCTGATTTCCTACAAAAGTTTCA 57.480 30.769 0.00 0.00 0.00 2.69
207 208 9.880064 GTACTTCTGATTTCCTACAAAAGTTTC 57.120 33.333 0.00 0.00 0.00 2.78
208 209 9.403583 TGTACTTCTGATTTCCTACAAAAGTTT 57.596 29.630 0.00 0.00 0.00 2.66
209 210 8.974060 TGTACTTCTGATTTCCTACAAAAGTT 57.026 30.769 0.00 0.00 0.00 2.66
210 211 8.974060 TTGTACTTCTGATTTCCTACAAAAGT 57.026 30.769 0.00 0.00 0.00 2.66
213 214 9.403583 AGTTTTGTACTTCTGATTTCCTACAAA 57.596 29.630 0.00 0.00 34.09 2.83
214 215 8.974060 AGTTTTGTACTTCTGATTTCCTACAA 57.026 30.769 0.00 0.00 31.29 2.41
215 216 8.974060 AAGTTTTGTACTTCTGATTTCCTACA 57.026 30.769 0.00 0.00 43.67 2.74
218 219 9.628500 AGTAAAGTTTTGTACTTCTGATTTCCT 57.372 29.630 0.00 0.00 46.34 3.36
229 230 8.870879 GCAGAATCGATAGTAAAGTTTTGTACT 58.129 33.333 0.00 0.00 36.40 2.73
230 231 8.870879 AGCAGAATCGATAGTAAAGTTTTGTAC 58.129 33.333 0.00 0.00 37.40 2.90
231 232 8.997621 AGCAGAATCGATAGTAAAGTTTTGTA 57.002 30.769 0.00 0.00 37.40 2.41
232 233 7.907214 AGCAGAATCGATAGTAAAGTTTTGT 57.093 32.000 0.00 0.00 37.40 2.83
237 238 9.685828 GAGAAATAGCAGAATCGATAGTAAAGT 57.314 33.333 0.00 0.00 37.40 2.66
238 239 9.684448 TGAGAAATAGCAGAATCGATAGTAAAG 57.316 33.333 0.00 0.00 37.40 1.85
241 242 9.847706 GAATGAGAAATAGCAGAATCGATAGTA 57.152 33.333 0.00 0.00 37.40 1.82
242 243 7.540400 CGAATGAGAAATAGCAGAATCGATAGT 59.460 37.037 0.00 0.00 37.40 2.12
243 244 7.752686 TCGAATGAGAAATAGCAGAATCGATAG 59.247 37.037 0.00 0.00 31.51 2.08
244 245 7.593825 TCGAATGAGAAATAGCAGAATCGATA 58.406 34.615 0.00 0.00 31.51 2.92
245 246 6.450545 TCGAATGAGAAATAGCAGAATCGAT 58.549 36.000 0.00 0.00 31.51 3.59
246 247 5.831997 TCGAATGAGAAATAGCAGAATCGA 58.168 37.500 0.00 0.00 33.74 3.59
247 248 5.689514 ACTCGAATGAGAAATAGCAGAATCG 59.310 40.000 0.00 0.00 45.57 3.34
248 249 8.581057 TTACTCGAATGAGAAATAGCAGAATC 57.419 34.615 0.00 0.00 45.57 2.52
249 250 8.417106 TCTTACTCGAATGAGAAATAGCAGAAT 58.583 33.333 0.00 0.00 45.57 2.40
250 251 7.772166 TCTTACTCGAATGAGAAATAGCAGAA 58.228 34.615 0.00 0.00 45.57 3.02
251 252 7.334844 TCTTACTCGAATGAGAAATAGCAGA 57.665 36.000 0.00 0.00 45.57 4.26
252 253 7.993821 TTCTTACTCGAATGAGAAATAGCAG 57.006 36.000 0.00 0.00 45.57 4.24
253 254 8.948631 ATTTCTTACTCGAATGAGAAATAGCA 57.051 30.769 20.76 0.00 45.57 3.49
287 288 5.811399 TGTCTGATTCGAACAGTTTTTGT 57.189 34.783 19.98 0.00 43.45 2.83
288 289 6.429624 TGATGTCTGATTCGAACAGTTTTTG 58.570 36.000 19.98 3.32 36.81 2.44
289 290 6.293626 CCTGATGTCTGATTCGAACAGTTTTT 60.294 38.462 19.98 9.47 36.81 1.94
290 291 5.180117 CCTGATGTCTGATTCGAACAGTTTT 59.820 40.000 19.98 10.66 36.81 2.43
291 292 4.692625 CCTGATGTCTGATTCGAACAGTTT 59.307 41.667 19.98 10.90 36.81 2.66
292 293 4.021104 TCCTGATGTCTGATTCGAACAGTT 60.021 41.667 19.98 11.14 36.81 3.16
293 294 3.511540 TCCTGATGTCTGATTCGAACAGT 59.488 43.478 19.98 7.79 36.81 3.55
294 295 4.115401 TCCTGATGTCTGATTCGAACAG 57.885 45.455 16.74 16.74 36.80 3.16
295 296 4.743057 ATCCTGATGTCTGATTCGAACA 57.257 40.909 0.00 0.00 0.00 3.18
296 297 5.582269 TCAAATCCTGATGTCTGATTCGAAC 59.418 40.000 0.00 0.00 0.00 3.95
297 298 5.733676 TCAAATCCTGATGTCTGATTCGAA 58.266 37.500 0.00 0.00 0.00 3.71
298 299 5.343307 TCAAATCCTGATGTCTGATTCGA 57.657 39.130 0.00 0.00 0.00 3.71
299 300 4.025061 GCTCAAATCCTGATGTCTGATTCG 60.025 45.833 0.00 0.00 32.14 3.34
300 301 4.880120 TGCTCAAATCCTGATGTCTGATTC 59.120 41.667 0.00 0.00 32.14 2.52
301 302 4.851843 TGCTCAAATCCTGATGTCTGATT 58.148 39.130 0.00 0.00 32.14 2.57
302 303 4.498894 TGCTCAAATCCTGATGTCTGAT 57.501 40.909 0.00 0.00 32.14 2.90
303 304 3.986996 TGCTCAAATCCTGATGTCTGA 57.013 42.857 0.00 0.00 32.14 3.27
304 305 4.008330 ACTTGCTCAAATCCTGATGTCTG 58.992 43.478 0.00 0.00 32.14 3.51
305 306 4.008330 CACTTGCTCAAATCCTGATGTCT 58.992 43.478 0.00 0.00 32.14 3.41
306 307 3.427233 GCACTTGCTCAAATCCTGATGTC 60.427 47.826 0.00 0.00 38.21 3.06
307 308 2.490903 GCACTTGCTCAAATCCTGATGT 59.509 45.455 0.00 0.00 38.21 3.06
308 309 2.490509 TGCACTTGCTCAAATCCTGATG 59.509 45.455 2.33 0.00 42.66 3.07
309 310 2.799017 TGCACTTGCTCAAATCCTGAT 58.201 42.857 2.33 0.00 42.66 2.90
310 311 2.275134 TGCACTTGCTCAAATCCTGA 57.725 45.000 2.33 0.00 42.66 3.86
311 312 3.374220 TTTGCACTTGCTCAAATCCTG 57.626 42.857 2.33 0.00 42.66 3.86
312 313 3.243975 CCTTTTGCACTTGCTCAAATCCT 60.244 43.478 2.33 0.00 42.66 3.24
313 314 3.062042 CCTTTTGCACTTGCTCAAATCC 58.938 45.455 2.33 0.00 42.66 3.01
314 315 3.981211 TCCTTTTGCACTTGCTCAAATC 58.019 40.909 2.33 0.00 42.66 2.17
315 316 4.039488 TCATCCTTTTGCACTTGCTCAAAT 59.961 37.500 2.33 0.00 42.66 2.32
316 317 3.384146 TCATCCTTTTGCACTTGCTCAAA 59.616 39.130 2.33 1.50 42.66 2.69
317 318 2.957680 TCATCCTTTTGCACTTGCTCAA 59.042 40.909 2.33 0.00 42.66 3.02
318 319 2.555325 CTCATCCTTTTGCACTTGCTCA 59.445 45.455 2.33 0.00 42.66 4.26
319 320 2.670509 GCTCATCCTTTTGCACTTGCTC 60.671 50.000 2.33 0.00 42.66 4.26
320 321 1.271656 GCTCATCCTTTTGCACTTGCT 59.728 47.619 2.33 0.00 42.66 3.91
321 322 1.271656 AGCTCATCCTTTTGCACTTGC 59.728 47.619 0.00 0.00 42.50 4.01
322 323 2.555325 TGAGCTCATCCTTTTGCACTTG 59.445 45.455 13.74 0.00 0.00 3.16
323 324 2.867624 TGAGCTCATCCTTTTGCACTT 58.132 42.857 13.74 0.00 0.00 3.16
324 325 2.574006 TGAGCTCATCCTTTTGCACT 57.426 45.000 13.74 0.00 0.00 4.40
325 326 2.751259 TCATGAGCTCATCCTTTTGCAC 59.249 45.455 26.44 0.00 33.61 4.57
326 327 3.014623 CTCATGAGCTCATCCTTTTGCA 58.985 45.455 26.44 5.66 33.61 4.08
327 328 3.694535 CTCATGAGCTCATCCTTTTGC 57.305 47.619 26.44 0.00 33.61 3.68
338 339 7.528036 ATCTGATCAAAGATATGCTCATGAGCT 60.528 37.037 39.46 28.72 43.57 4.09
339 340 6.596106 ATCTGATCAAAGATATGCTCATGAGC 59.404 38.462 35.76 35.76 43.53 4.26
340 341 8.554835 AATCTGATCAAAGATATGCTCATGAG 57.445 34.615 18.84 18.84 35.83 2.90
341 342 8.154856 TGAATCTGATCAAAGATATGCTCATGA 58.845 33.333 0.00 0.00 35.83 3.07
342 343 8.324163 TGAATCTGATCAAAGATATGCTCATG 57.676 34.615 0.00 0.00 35.83 3.07
343 344 8.919777 TTGAATCTGATCAAAGATATGCTCAT 57.080 30.769 0.00 0.00 35.83 2.90
344 345 8.919777 ATTGAATCTGATCAAAGATATGCTCA 57.080 30.769 0.00 0.00 42.22 4.26
345 346 9.000486 TGATTGAATCTGATCAAAGATATGCTC 58.000 33.333 6.73 0.00 42.22 4.26
346 347 8.784994 GTGATTGAATCTGATCAAAGATATGCT 58.215 33.333 6.73 0.00 42.22 3.79
347 348 8.784994 AGTGATTGAATCTGATCAAAGATATGC 58.215 33.333 6.73 0.00 42.22 3.14
349 350 9.848710 ACAGTGATTGAATCTGATCAAAGATAT 57.151 29.630 6.73 0.00 42.22 1.63
350 351 9.676861 AACAGTGATTGAATCTGATCAAAGATA 57.323 29.630 6.73 0.00 42.22 1.98
351 352 8.577048 AACAGTGATTGAATCTGATCAAAGAT 57.423 30.769 6.73 0.00 42.22 2.40
352 353 7.120285 GGAACAGTGATTGAATCTGATCAAAGA 59.880 37.037 6.73 0.00 42.22 2.52
353 354 7.120873 AGGAACAGTGATTGAATCTGATCAAAG 59.879 37.037 6.73 0.00 42.22 2.77
354 355 6.944290 AGGAACAGTGATTGAATCTGATCAAA 59.056 34.615 6.73 0.00 42.22 2.69
355 356 6.479006 AGGAACAGTGATTGAATCTGATCAA 58.521 36.000 6.73 0.00 43.03 2.57
356 357 6.058553 AGGAACAGTGATTGAATCTGATCA 57.941 37.500 6.73 0.00 34.32 2.92
357 358 7.254727 GCTTAGGAACAGTGATTGAATCTGATC 60.255 40.741 6.73 2.03 33.93 2.92
358 359 6.541641 GCTTAGGAACAGTGATTGAATCTGAT 59.458 38.462 6.73 0.00 33.93 2.90
359 360 5.877012 GCTTAGGAACAGTGATTGAATCTGA 59.123 40.000 6.73 0.00 33.93 3.27
360 361 5.879223 AGCTTAGGAACAGTGATTGAATCTG 59.121 40.000 6.73 0.00 35.60 2.90
361 362 5.879223 CAGCTTAGGAACAGTGATTGAATCT 59.121 40.000 6.73 0.00 0.00 2.40
362 363 5.877012 TCAGCTTAGGAACAGTGATTGAATC 59.123 40.000 0.00 0.00 0.00 2.52
363 364 5.809001 TCAGCTTAGGAACAGTGATTGAAT 58.191 37.500 0.00 0.00 0.00 2.57
364 365 5.227569 TCAGCTTAGGAACAGTGATTGAA 57.772 39.130 0.00 0.00 0.00 2.69
365 366 4.890158 TCAGCTTAGGAACAGTGATTGA 57.110 40.909 0.00 0.00 0.00 2.57
366 367 4.269603 CGATCAGCTTAGGAACAGTGATTG 59.730 45.833 0.00 0.00 0.00 2.67
367 368 4.160439 TCGATCAGCTTAGGAACAGTGATT 59.840 41.667 0.00 0.00 0.00 2.57
368 369 3.701542 TCGATCAGCTTAGGAACAGTGAT 59.298 43.478 0.00 0.00 0.00 3.06
369 370 3.089284 TCGATCAGCTTAGGAACAGTGA 58.911 45.455 0.00 0.00 0.00 3.41
370 371 3.443037 CTCGATCAGCTTAGGAACAGTG 58.557 50.000 0.00 0.00 0.00 3.66
371 372 2.159170 GCTCGATCAGCTTAGGAACAGT 60.159 50.000 9.16 0.00 45.83 3.55
372 373 2.468831 GCTCGATCAGCTTAGGAACAG 58.531 52.381 9.16 0.00 45.83 3.16
373 374 2.586258 GCTCGATCAGCTTAGGAACA 57.414 50.000 9.16 0.00 45.83 3.18
383 384 6.127786 TGAGAGTGATATTATGGCTCGATCAG 60.128 42.308 0.00 0.00 0.00 2.90
384 385 5.711976 TGAGAGTGATATTATGGCTCGATCA 59.288 40.000 0.00 0.00 0.00 2.92
385 386 6.201226 TGAGAGTGATATTATGGCTCGATC 57.799 41.667 0.00 0.00 0.00 3.69
386 387 6.788598 ATGAGAGTGATATTATGGCTCGAT 57.211 37.500 0.00 0.00 0.00 3.59
387 388 6.596309 AATGAGAGTGATATTATGGCTCGA 57.404 37.500 0.00 0.00 0.00 4.04
388 389 7.490725 CCTTAATGAGAGTGATATTATGGCTCG 59.509 40.741 0.00 0.00 30.10 5.03
389 390 7.768120 CCCTTAATGAGAGTGATATTATGGCTC 59.232 40.741 0.00 0.00 33.56 4.70
390 391 7.628234 CCCTTAATGAGAGTGATATTATGGCT 58.372 38.462 0.00 0.00 33.56 4.75
391 392 6.317391 GCCCTTAATGAGAGTGATATTATGGC 59.683 42.308 0.00 0.00 33.56 4.40
392 393 6.825721 GGCCCTTAATGAGAGTGATATTATGG 59.174 42.308 0.00 0.00 34.16 2.74
393 394 7.628234 AGGCCCTTAATGAGAGTGATATTATG 58.372 38.462 0.00 0.00 0.00 1.90
394 395 7.821134 AGGCCCTTAATGAGAGTGATATTAT 57.179 36.000 0.00 0.00 0.00 1.28
395 396 8.917414 ATAGGCCCTTAATGAGAGTGATATTA 57.083 34.615 0.00 0.00 0.00 0.98
396 397 7.821134 ATAGGCCCTTAATGAGAGTGATATT 57.179 36.000 0.00 0.00 0.00 1.28
397 398 7.821134 AATAGGCCCTTAATGAGAGTGATAT 57.179 36.000 0.00 0.00 0.00 1.63
398 399 7.453393 CAAATAGGCCCTTAATGAGAGTGATA 58.547 38.462 0.00 0.00 0.00 2.15
399 400 6.302269 CAAATAGGCCCTTAATGAGAGTGAT 58.698 40.000 0.00 0.00 0.00 3.06
400 401 5.397899 CCAAATAGGCCCTTAATGAGAGTGA 60.398 44.000 0.00 0.00 0.00 3.41
401 402 4.823989 CCAAATAGGCCCTTAATGAGAGTG 59.176 45.833 0.00 0.00 0.00 3.51
439 440 7.362142 GGAAACAGAATCCTCCACAATTTCTAC 60.362 40.741 0.00 0.00 33.98 2.59
579 582 5.256474 ACTTGTCATGAAGGAAATACAGGG 58.744 41.667 0.00 0.00 0.00 4.45
581 584 6.540189 CCCTACTTGTCATGAAGGAAATACAG 59.460 42.308 11.32 0.00 0.00 2.74
591 594 3.264193 ACAGATGCCCTACTTGTCATGAA 59.736 43.478 0.00 0.00 0.00 2.57
608 618 8.893727 GGCAACAAAATATCTACTACAACAGAT 58.106 33.333 0.00 0.00 35.67 2.90
612 622 9.908152 AAAAGGCAACAAAATATCTACTACAAC 57.092 29.630 0.00 0.00 41.41 3.32
664 707 8.849168 TGCAAGAACTGAGAAAAGAATTATGAA 58.151 29.630 0.00 0.00 0.00 2.57
665 708 8.394971 TGCAAGAACTGAGAAAAGAATTATGA 57.605 30.769 0.00 0.00 0.00 2.15
666 709 8.509690 TCTGCAAGAACTGAGAAAAGAATTATG 58.490 33.333 0.00 0.00 42.31 1.90
690 1237 6.594788 ACTGTCATGGCAATGTTAAATTCT 57.405 33.333 0.00 0.00 35.15 2.40
716 1292 6.223852 AGAGCGTAAAAGATCACTTGAGAAA 58.776 36.000 0.00 0.00 36.39 2.52
720 1296 6.268825 ACTAGAGCGTAAAAGATCACTTGA 57.731 37.500 0.00 0.00 36.39 3.02
721 1297 8.635877 AATACTAGAGCGTAAAAGATCACTTG 57.364 34.615 0.00 0.00 36.39 3.16
735 1311 3.121544 GGGTTTCGGAAATACTAGAGCG 58.878 50.000 6.43 0.00 0.00 5.03
748 1327 2.359531 TGTTTGTTTAGCAGGGTTTCGG 59.640 45.455 0.00 0.00 0.00 4.30
818 1398 8.742554 TCTTTTTCTCGAGGCAATAATTTTTC 57.257 30.769 13.56 0.00 0.00 2.29
819 1399 9.541143 TTTCTTTTTCTCGAGGCAATAATTTTT 57.459 25.926 13.56 0.00 0.00 1.94
820 1400 9.541143 TTTTCTTTTTCTCGAGGCAATAATTTT 57.459 25.926 13.56 0.00 0.00 1.82
821 1401 9.541143 TTTTTCTTTTTCTCGAGGCAATAATTT 57.459 25.926 13.56 0.00 0.00 1.82
867 1448 7.799784 TCTTCGGTTTGTTTATTAGTAGTTGC 58.200 34.615 0.00 0.00 0.00 4.17
868 1449 9.199982 TCTCTTCGGTTTGTTTATTAGTAGTTG 57.800 33.333 0.00 0.00 0.00 3.16
869 1450 9.201127 GTCTCTTCGGTTTGTTTATTAGTAGTT 57.799 33.333 0.00 0.00 0.00 2.24
870 1451 8.583296 AGTCTCTTCGGTTTGTTTATTAGTAGT 58.417 33.333 0.00 0.00 0.00 2.73
871 1452 8.983307 AGTCTCTTCGGTTTGTTTATTAGTAG 57.017 34.615 0.00 0.00 0.00 2.57
872 1453 8.579006 TGAGTCTCTTCGGTTTGTTTATTAGTA 58.421 33.333 0.65 0.00 0.00 1.82
876 1457 6.522054 TCTGAGTCTCTTCGGTTTGTTTATT 58.478 36.000 0.65 0.00 0.00 1.40
1025 1606 4.648626 GTGGCTGGGTGCTGCTGA 62.649 66.667 0.00 0.00 42.39 4.26
1506 2106 1.603236 CTTCAGAGCGAGGGAGCAGT 61.603 60.000 0.00 0.00 40.15 4.40
1531 2145 2.015456 TCTCTGCTCCCTGTCTGAAA 57.985 50.000 0.00 0.00 0.00 2.69
1646 2261 9.216117 GTTGTACAAATTACAGATCCAACTAGT 57.784 33.333 10.51 0.00 0.00 2.57
1715 2341 1.230635 GGATAATGGCACGCGCAGAT 61.231 55.000 5.73 0.00 41.24 2.90
1717 2343 2.633657 GGATAATGGCACGCGCAG 59.366 61.111 5.73 0.00 41.24 5.18
1720 2346 2.089433 GACACGGATAATGGCACGCG 62.089 60.000 3.53 3.53 0.00 6.01
1876 2527 1.141665 GAAACCATGGCGCCCAATC 59.858 57.895 26.77 9.93 36.95 2.67
1884 2535 0.529378 CCTTGAGCTGAAACCATGGC 59.471 55.000 13.04 0.00 0.00 4.40
1888 2539 0.823356 GGTGCCTTGAGCTGAAACCA 60.823 55.000 0.00 0.00 44.23 3.67
1913 2564 1.272490 CCTCAACGCTCTTGTGACCTA 59.728 52.381 0.00 0.00 0.00 3.08
1926 2577 6.018262 TCAGAACAGTTACATTTTCCTCAACG 60.018 38.462 0.00 0.00 0.00 4.10
1931 2582 7.823745 AATGTCAGAACAGTTACATTTTCCT 57.176 32.000 6.98 0.00 38.98 3.36
1940 2591 7.307751 CGGCTTTTCTTAATGTCAGAACAGTTA 60.308 37.037 0.00 0.00 39.20 2.24
2151 2811 6.436261 CATCCATGTATTGACAATGAAGAGC 58.564 40.000 11.05 0.00 39.59 4.09
2152 2812 6.769341 TCCATCCATGTATTGACAATGAAGAG 59.231 38.462 11.05 0.00 39.59 2.85
2199 2859 3.170791 CACTATGTGAGGTAGTGGCAG 57.829 52.381 5.59 0.00 43.27 4.85
2227 2887 7.523293 TCTATCTGGCTTCTCTCTTATTGAG 57.477 40.000 0.00 0.00 43.96 3.02
2229 2889 7.656948 CCTTTCTATCTGGCTTCTCTCTTATTG 59.343 40.741 0.00 0.00 0.00 1.90
2250 2910 6.407202 ACATGTACTACACAATCTCCCTTTC 58.593 40.000 0.00 0.00 41.55 2.62
2306 2966 2.735772 TTGATGCTCCGAGGGCCTC 61.736 63.158 24.06 24.06 0.00 4.70
2421 3101 2.827800 TCAAGAGCTCAGACACCAAG 57.172 50.000 17.77 0.00 0.00 3.61
2465 3145 5.516339 CCAAAAACTCAGTACAAAGCAAGTG 59.484 40.000 0.00 0.00 0.00 3.16
2527 3207 1.598130 AACTCGCGCTCAAAAGCCT 60.598 52.632 5.56 0.00 46.34 4.58
2528 3208 1.441016 CAACTCGCGCTCAAAAGCC 60.441 57.895 5.56 0.00 46.34 4.35
2529 3209 2.077198 GCAACTCGCGCTCAAAAGC 61.077 57.895 5.56 0.00 45.56 3.51
2530 3210 1.441016 GGCAACTCGCGCTCAAAAG 60.441 57.895 5.56 0.00 43.84 2.27
2531 3211 2.637025 GGCAACTCGCGCTCAAAA 59.363 55.556 5.56 0.00 43.84 2.44
2543 3223 1.208293 TCAAACCCCAAAACAGGCAAC 59.792 47.619 0.00 0.00 0.00 4.17
2544 3224 1.484240 CTCAAACCCCAAAACAGGCAA 59.516 47.619 0.00 0.00 0.00 4.52
2545 3225 1.118838 CTCAAACCCCAAAACAGGCA 58.881 50.000 0.00 0.00 0.00 4.75
2546 3226 1.119684 ACTCAAACCCCAAAACAGGC 58.880 50.000 0.00 0.00 0.00 4.85
2547 3227 2.107366 ACACTCAAACCCCAAAACAGG 58.893 47.619 0.00 0.00 0.00 4.00
2548 3228 2.495669 ACACACTCAAACCCCAAAACAG 59.504 45.455 0.00 0.00 0.00 3.16
2549 3229 2.530701 ACACACTCAAACCCCAAAACA 58.469 42.857 0.00 0.00 0.00 2.83
2550 3230 3.258228 CAACACACTCAAACCCCAAAAC 58.742 45.455 0.00 0.00 0.00 2.43
2551 3231 2.900546 ACAACACACTCAAACCCCAAAA 59.099 40.909 0.00 0.00 0.00 2.44
2552 3232 2.232452 CACAACACACTCAAACCCCAAA 59.768 45.455 0.00 0.00 0.00 3.28
2553 3233 1.821753 CACAACACACTCAAACCCCAA 59.178 47.619 0.00 0.00 0.00 4.12
2554 3234 1.468985 CACAACACACTCAAACCCCA 58.531 50.000 0.00 0.00 0.00 4.96
2555 3235 0.744281 CCACAACACACTCAAACCCC 59.256 55.000 0.00 0.00 0.00 4.95
2556 3236 1.757682 TCCACAACACACTCAAACCC 58.242 50.000 0.00 0.00 0.00 4.11
2557 3237 3.252458 GGTATCCACAACACACTCAAACC 59.748 47.826 0.00 0.00 0.00 3.27
2558 3238 3.880490 TGGTATCCACAACACACTCAAAC 59.120 43.478 0.00 0.00 0.00 2.93
2559 3239 4.157849 TGGTATCCACAACACACTCAAA 57.842 40.909 0.00 0.00 0.00 2.69
2560 3240 3.847671 TGGTATCCACAACACACTCAA 57.152 42.857 0.00 0.00 0.00 3.02
2561 3241 4.323417 GAATGGTATCCACAACACACTCA 58.677 43.478 0.00 0.00 35.80 3.41
2562 3242 3.370978 CGAATGGTATCCACAACACACTC 59.629 47.826 0.00 0.00 35.80 3.51
2563 3243 3.244422 ACGAATGGTATCCACAACACACT 60.244 43.478 0.00 0.00 35.80 3.55
2564 3244 3.071479 ACGAATGGTATCCACAACACAC 58.929 45.455 0.00 0.00 35.80 3.82
2565 3245 3.070748 CACGAATGGTATCCACAACACA 58.929 45.455 0.00 0.00 35.80 3.72
2566 3246 2.418628 CCACGAATGGTATCCACAACAC 59.581 50.000 0.00 0.00 41.64 3.32
2567 3247 2.616765 CCCACGAATGGTATCCACAACA 60.617 50.000 0.00 0.00 45.66 3.33
2568 3248 2.014128 CCCACGAATGGTATCCACAAC 58.986 52.381 0.00 0.00 45.66 3.32
2569 3249 1.065053 CCCCACGAATGGTATCCACAA 60.065 52.381 0.00 0.00 45.66 3.33
2570 3250 0.544223 CCCCACGAATGGTATCCACA 59.456 55.000 0.00 0.00 45.66 4.17
2571 3251 0.179029 CCCCCACGAATGGTATCCAC 60.179 60.000 0.00 0.00 45.66 4.02
2572 3252 0.622154 ACCCCCACGAATGGTATCCA 60.622 55.000 0.00 0.00 45.66 3.41
2573 3253 0.108019 GACCCCCACGAATGGTATCC 59.892 60.000 0.00 0.00 45.66 2.59
2574 3254 1.129058 AGACCCCCACGAATGGTATC 58.871 55.000 0.00 0.00 45.66 2.24
2575 3255 1.211949 CAAGACCCCCACGAATGGTAT 59.788 52.381 0.00 0.00 45.66 2.73
2576 3256 0.616371 CAAGACCCCCACGAATGGTA 59.384 55.000 0.00 0.00 45.66 3.25
2577 3257 1.378762 CAAGACCCCCACGAATGGT 59.621 57.895 0.00 0.00 45.66 3.55
2578 3258 1.378514 CCAAGACCCCCACGAATGG 60.379 63.158 0.00 0.00 46.81 3.16
2579 3259 1.378514 CCCAAGACCCCCACGAATG 60.379 63.158 0.00 0.00 0.00 2.67
2580 3260 2.612493 CCCCAAGACCCCCACGAAT 61.612 63.158 0.00 0.00 0.00 3.34
2581 3261 3.253838 CCCCAAGACCCCCACGAA 61.254 66.667 0.00 0.00 0.00 3.85
2584 3264 3.190391 AACCCCCAAGACCCCCAC 61.190 66.667 0.00 0.00 0.00 4.61
2585 3265 2.861974 GAACCCCCAAGACCCCCA 60.862 66.667 0.00 0.00 0.00 4.96
2586 3266 2.534533 AGAACCCCCAAGACCCCC 60.535 66.667 0.00 0.00 0.00 5.40
2587 3267 2.763902 CAGAACCCCCAAGACCCC 59.236 66.667 0.00 0.00 0.00 4.95
2588 3268 2.035783 GCAGAACCCCCAAGACCC 59.964 66.667 0.00 0.00 0.00 4.46
2589 3269 2.198304 ATCGCAGAACCCCCAAGACC 62.198 60.000 0.00 0.00 43.58 3.85
2590 3270 0.744771 GATCGCAGAACCCCCAAGAC 60.745 60.000 0.00 0.00 43.58 3.01
2591 3271 0.909610 AGATCGCAGAACCCCCAAGA 60.910 55.000 0.00 0.00 43.58 3.02
2592 3272 0.462759 GAGATCGCAGAACCCCCAAG 60.463 60.000 0.00 0.00 43.58 3.61
2593 3273 1.602237 GAGATCGCAGAACCCCCAA 59.398 57.895 0.00 0.00 43.58 4.12
2594 3274 2.721167 CGAGATCGCAGAACCCCCA 61.721 63.158 0.00 0.00 43.58 4.96
2595 3275 1.749334 ATCGAGATCGCAGAACCCCC 61.749 60.000 0.00 0.00 43.58 5.40
2596 3276 0.319125 GATCGAGATCGCAGAACCCC 60.319 60.000 0.00 0.00 43.58 4.95
2597 3277 0.671251 AGATCGAGATCGCAGAACCC 59.329 55.000 7.37 0.00 43.58 4.11
2598 3278 1.601663 CCAGATCGAGATCGCAGAACC 60.602 57.143 7.37 0.00 43.58 3.62
2599 3279 1.601663 CCCAGATCGAGATCGCAGAAC 60.602 57.143 7.37 0.00 43.58 3.01
2600 3280 0.670706 CCCAGATCGAGATCGCAGAA 59.329 55.000 7.37 0.00 43.58 3.02
2601 3281 1.175347 CCCCAGATCGAGATCGCAGA 61.175 60.000 7.37 0.00 42.48 4.26
2602 3282 1.175347 TCCCCAGATCGAGATCGCAG 61.175 60.000 7.37 2.76 42.48 5.18
2603 3283 1.152756 TCCCCAGATCGAGATCGCA 60.153 57.895 7.37 0.00 42.48 5.10
2604 3284 0.891449 TCTCCCCAGATCGAGATCGC 60.891 60.000 7.37 0.00 42.48 4.58
2605 3285 1.472082 CATCTCCCCAGATCGAGATCG 59.528 57.143 7.61 0.00 42.62 3.69
2606 3286 2.754552 CTCATCTCCCCAGATCGAGATC 59.245 54.545 7.61 5.00 42.62 2.75
2607 3287 2.557229 CCTCATCTCCCCAGATCGAGAT 60.557 54.545 5.33 5.33 44.80 2.75
2608 3288 1.202989 CCTCATCTCCCCAGATCGAGA 60.203 57.143 1.21 1.21 37.25 4.04
2609 3289 1.202989 TCCTCATCTCCCCAGATCGAG 60.203 57.143 0.00 0.00 37.25 4.04
2610 3290 0.853530 TCCTCATCTCCCCAGATCGA 59.146 55.000 0.00 0.00 37.25 3.59
2611 3291 1.255882 CTCCTCATCTCCCCAGATCG 58.744 60.000 0.00 0.00 37.25 3.69
2612 3292 1.132881 ACCTCCTCATCTCCCCAGATC 60.133 57.143 0.00 0.00 37.25 2.75
2613 3293 0.948050 ACCTCCTCATCTCCCCAGAT 59.052 55.000 0.00 0.00 40.32 2.90
2614 3294 0.031716 CACCTCCTCATCTCCCCAGA 60.032 60.000 0.00 0.00 0.00 3.86
2615 3295 0.031716 TCACCTCCTCATCTCCCCAG 60.032 60.000 0.00 0.00 0.00 4.45
2616 3296 0.031716 CTCACCTCCTCATCTCCCCA 60.032 60.000 0.00 0.00 0.00 4.96
2617 3297 0.031616 ACTCACCTCCTCATCTCCCC 60.032 60.000 0.00 0.00 0.00 4.81
2618 3298 1.408969 GACTCACCTCCTCATCTCCC 58.591 60.000 0.00 0.00 0.00 4.30
2619 3299 1.028905 CGACTCACCTCCTCATCTCC 58.971 60.000 0.00 0.00 0.00 3.71
2620 3300 1.028905 CCGACTCACCTCCTCATCTC 58.971 60.000 0.00 0.00 0.00 2.75
2621 3301 1.040339 GCCGACTCACCTCCTCATCT 61.040 60.000 0.00 0.00 0.00 2.90
2622 3302 1.323271 TGCCGACTCACCTCCTCATC 61.323 60.000 0.00 0.00 0.00 2.92
2623 3303 1.305297 TGCCGACTCACCTCCTCAT 60.305 57.895 0.00 0.00 0.00 2.90
2624 3304 1.979155 CTGCCGACTCACCTCCTCA 60.979 63.158 0.00 0.00 0.00 3.86
2625 3305 2.716017 CCTGCCGACTCACCTCCTC 61.716 68.421 0.00 0.00 0.00 3.71
2626 3306 2.681778 CCTGCCGACTCACCTCCT 60.682 66.667 0.00 0.00 0.00 3.69
2627 3307 2.997897 ACCTGCCGACTCACCTCC 60.998 66.667 0.00 0.00 0.00 4.30
2628 3308 2.262915 CACCTGCCGACTCACCTC 59.737 66.667 0.00 0.00 0.00 3.85
2629 3309 3.314331 CCACCTGCCGACTCACCT 61.314 66.667 0.00 0.00 0.00 4.00
2643 3323 2.936032 AAGAGGGGGAGTGGCCAC 60.936 66.667 29.22 29.22 40.39 5.01
2644 3324 2.935481 CAAGAGGGGGAGTGGCCA 60.935 66.667 0.00 0.00 38.95 5.36
2645 3325 4.432741 GCAAGAGGGGGAGTGGCC 62.433 72.222 0.00 0.00 0.00 5.36
2646 3326 3.334054 AGCAAGAGGGGGAGTGGC 61.334 66.667 0.00 0.00 0.00 5.01
2647 3327 1.908340 CTGAGCAAGAGGGGGAGTGG 61.908 65.000 0.00 0.00 0.00 4.00
2648 3328 1.601171 CTGAGCAAGAGGGGGAGTG 59.399 63.158 0.00 0.00 0.00 3.51
2649 3329 2.297129 GCTGAGCAAGAGGGGGAGT 61.297 63.158 0.00 0.00 0.00 3.85
2650 3330 2.296365 TGCTGAGCAAGAGGGGGAG 61.296 63.158 3.81 0.00 34.76 4.30
2651 3331 2.203983 TGCTGAGCAAGAGGGGGA 60.204 61.111 3.81 0.00 34.76 4.81
2652 3332 2.045536 GTGCTGAGCAAGAGGGGG 60.046 66.667 9.51 0.00 41.47 5.40
2653 3333 1.673665 GTGTGCTGAGCAAGAGGGG 60.674 63.158 9.51 0.00 41.47 4.79
2654 3334 2.031516 CGTGTGCTGAGCAAGAGGG 61.032 63.158 9.51 0.00 41.47 4.30
2655 3335 2.031516 CCGTGTGCTGAGCAAGAGG 61.032 63.158 9.51 8.89 41.47 3.69
2656 3336 0.038251 TACCGTGTGCTGAGCAAGAG 60.038 55.000 9.51 2.75 41.47 2.85
2657 3337 0.319555 GTACCGTGTGCTGAGCAAGA 60.320 55.000 9.51 0.00 41.47 3.02
2658 3338 0.599991 TGTACCGTGTGCTGAGCAAG 60.600 55.000 9.51 3.56 41.47 4.01
2659 3339 0.034756 ATGTACCGTGTGCTGAGCAA 59.965 50.000 9.51 0.00 41.47 3.91
2660 3340 0.389817 GATGTACCGTGTGCTGAGCA 60.390 55.000 1.40 1.40 35.60 4.26
2661 3341 1.084370 GGATGTACCGTGTGCTGAGC 61.084 60.000 0.00 0.00 0.00 4.26
2662 3342 0.532573 AGGATGTACCGTGTGCTGAG 59.467 55.000 0.00 0.00 44.74 3.35
2663 3343 0.530744 GAGGATGTACCGTGTGCTGA 59.469 55.000 0.00 0.00 44.74 4.26
2664 3344 0.246360 TGAGGATGTACCGTGTGCTG 59.754 55.000 0.00 0.00 44.74 4.41
2665 3345 0.532573 CTGAGGATGTACCGTGTGCT 59.467 55.000 0.00 0.00 44.74 4.40
2666 3346 0.460284 CCTGAGGATGTACCGTGTGC 60.460 60.000 0.00 0.00 44.74 4.57
2667 3347 1.135139 CTCCTGAGGATGTACCGTGTG 59.865 57.143 0.00 0.00 44.74 3.82
2668 3348 1.475403 CTCCTGAGGATGTACCGTGT 58.525 55.000 0.00 0.00 44.74 4.49
2680 3360 2.125753 GCTGCGTCACCTCCTGAG 60.126 66.667 0.00 0.00 0.00 3.35
2681 3361 2.210013 AAGCTGCGTCACCTCCTGA 61.210 57.895 0.00 0.00 0.00 3.86
2682 3362 2.031516 CAAGCTGCGTCACCTCCTG 61.032 63.158 0.00 0.00 0.00 3.86
2683 3363 2.345244 CAAGCTGCGTCACCTCCT 59.655 61.111 0.00 0.00 0.00 3.69
2684 3364 2.743928 CCAAGCTGCGTCACCTCC 60.744 66.667 0.00 0.00 0.00 4.30
2685 3365 3.426568 GCCAAGCTGCGTCACCTC 61.427 66.667 0.00 0.00 0.00 3.85
2707 3387 4.135153 CTCCACCTGACGAGCCGG 62.135 72.222 0.00 0.00 0.00 6.13
2708 3388 4.803426 GCTCCACCTGACGAGCCG 62.803 72.222 0.00 0.00 44.70 5.52
2711 3391 3.775654 GGGGCTCCACCTGACGAG 61.776 72.222 0.00 0.00 39.10 4.18
2746 3426 2.105477 TCCTTAGCAGAATGGGAGCATC 59.895 50.000 0.00 0.00 35.86 3.91
2747 3427 2.130193 TCCTTAGCAGAATGGGAGCAT 58.870 47.619 0.00 0.00 35.86 3.79
2748 3428 1.583556 TCCTTAGCAGAATGGGAGCA 58.416 50.000 0.00 0.00 35.86 4.26
2749 3429 2.570135 CTTCCTTAGCAGAATGGGAGC 58.430 52.381 0.00 0.00 35.86 4.70
2750 3430 2.158696 CCCTTCCTTAGCAGAATGGGAG 60.159 54.545 0.00 0.00 35.43 4.30
2751 3431 1.846439 CCCTTCCTTAGCAGAATGGGA 59.154 52.381 0.00 0.00 35.43 4.37
2752 3432 1.133668 CCCCTTCCTTAGCAGAATGGG 60.134 57.143 0.33 0.33 41.10 4.00
2753 3433 1.846439 TCCCCTTCCTTAGCAGAATGG 59.154 52.381 0.00 0.00 35.86 3.16
2754 3434 2.507471 AGTCCCCTTCCTTAGCAGAATG 59.493 50.000 0.00 0.00 40.87 2.67
2755 3435 2.774809 GAGTCCCCTTCCTTAGCAGAAT 59.225 50.000 0.00 0.00 0.00 2.40
2756 3436 2.188817 GAGTCCCCTTCCTTAGCAGAA 58.811 52.381 0.00 0.00 0.00 3.02
2757 3437 1.867363 GAGTCCCCTTCCTTAGCAGA 58.133 55.000 0.00 0.00 0.00 4.26
2758 3438 0.461961 CGAGTCCCCTTCCTTAGCAG 59.538 60.000 0.00 0.00 0.00 4.24
2759 3439 0.976073 CCGAGTCCCCTTCCTTAGCA 60.976 60.000 0.00 0.00 0.00 3.49
2760 3440 1.687297 CCCGAGTCCCCTTCCTTAGC 61.687 65.000 0.00 0.00 0.00 3.09
2761 3441 1.049289 CCCCGAGTCCCCTTCCTTAG 61.049 65.000 0.00 0.00 0.00 2.18
2762 3442 1.002533 CCCCGAGTCCCCTTCCTTA 59.997 63.158 0.00 0.00 0.00 2.69
2763 3443 2.285442 CCCCGAGTCCCCTTCCTT 60.285 66.667 0.00 0.00 0.00 3.36
2766 3446 3.787001 CTGCCCCGAGTCCCCTTC 61.787 72.222 0.00 0.00 0.00 3.46
2782 3462 3.999285 AGGACACGGGAGCCTCCT 61.999 66.667 11.29 0.00 36.57 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.