Multiple sequence alignment - TraesCS7B01G317700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G317700 chr7B 100.000 3781 0 0 1 3781 567803989 567800209 0.000000e+00 6983.0
1 TraesCS7B01G317700 chr7B 87.879 660 38 13 3137 3758 19110134 19109479 0.000000e+00 737.0
2 TraesCS7B01G317700 chr7D 97.213 2045 49 2 754 2790 529718915 529716871 0.000000e+00 3454.0
3 TraesCS7B01G317700 chr3A 90.039 1526 124 16 1264 2775 599581090 599579579 0.000000e+00 1951.0
4 TraesCS7B01G317700 chr3A 89.630 270 28 0 999 1268 599581386 599581117 1.010000e-90 344.0
5 TraesCS7B01G317700 chr7A 95.879 1189 39 6 1642 2825 609262645 609263828 0.000000e+00 1916.0
6 TraesCS7B01G317700 chr7A 92.642 530 26 8 751 1267 609261302 609261831 0.000000e+00 750.0
7 TraesCS7B01G317700 chr7A 93.094 362 19 2 1292 1647 609261901 609262262 3.350000e-145 525.0
8 TraesCS7B01G317700 chr7A 91.262 103 7 2 543 644 163391665 163391766 5.090000e-29 139.0
9 TraesCS7B01G317700 chr7A 86.726 113 15 0 641 753 670031383 670031495 3.960000e-25 126.0
10 TraesCS7B01G317700 chr7A 90.789 76 7 0 455 530 50112729 50112654 6.680000e-18 102.0
11 TraesCS7B01G317700 chr7A 90.667 75 7 0 456 530 603933389 603933463 2.400000e-17 100.0
12 TraesCS7B01G317700 chr3B 89.304 1524 131 18 1264 2775 603536354 603534851 0.000000e+00 1882.0
13 TraesCS7B01G317700 chr3B 90.649 663 38 15 3125 3781 228907653 228907009 0.000000e+00 859.0
14 TraesCS7B01G317700 chr3B 89.595 346 34 2 118 462 79784382 79784038 4.480000e-119 438.0
15 TraesCS7B01G317700 chr3B 87.283 346 42 2 118 462 783334766 783335110 9.840000e-106 394.0
16 TraesCS7B01G317700 chr3B 80.664 512 65 16 765 1268 603536866 603536381 2.150000e-97 366.0
17 TraesCS7B01G317700 chr3B 94.421 233 8 4 3289 3517 244984711 244984480 1.670000e-93 353.0
18 TraesCS7B01G317700 chr3B 84.800 250 16 7 3510 3758 244978540 244978312 8.170000e-57 231.0
19 TraesCS7B01G317700 chr3B 95.652 138 2 2 3133 3267 244984829 244984693 6.360000e-53 219.0
20 TraesCS7B01G317700 chr3B 87.719 114 14 0 640 753 807806093 807806206 2.370000e-27 134.0
21 TraesCS7B01G317700 chr3D 89.376 1506 135 12 1284 2775 456647762 456646268 0.000000e+00 1871.0
22 TraesCS7B01G317700 chr3D 89.595 346 34 2 118 462 946035 945691 4.480000e-119 438.0
23 TraesCS7B01G317700 chr3D 93.220 118 8 0 529 646 945345 945228 1.400000e-39 174.0
24 TraesCS7B01G317700 chr6B 85.541 1155 125 19 1665 2789 704447088 704445946 0.000000e+00 1170.0
25 TraesCS7B01G317700 chr6B 86.689 879 88 18 1679 2547 8235207 8236066 0.000000e+00 948.0
26 TraesCS7B01G317700 chr6B 79.340 818 112 38 835 1632 8234315 8235095 4.330000e-144 521.0
27 TraesCS7B01G317700 chr6B 82.334 634 80 16 999 1631 704447935 704447333 4.330000e-144 521.0
28 TraesCS7B01G317700 chr6B 83.946 517 75 7 1685 2197 8140153 8139641 4.390000e-134 488.0
29 TraesCS7B01G317700 chr6B 89.329 328 34 1 136 462 699886041 699885714 9.770000e-111 411.0
30 TraesCS7B01G317700 chr6B 88.720 328 36 1 136 462 699806529 699806202 2.120000e-107 399.0
31 TraesCS7B01G317700 chr6B 80.978 368 57 7 1264 1631 8140603 8140249 2.880000e-71 279.0
32 TraesCS7B01G317700 chr6B 86.498 237 17 3 530 751 699885355 699885119 2.920000e-61 246.0
33 TraesCS7B01G317700 chr6B 86.134 238 18 3 529 751 699805844 699805607 3.770000e-60 243.0
34 TraesCS7B01G317700 chr6B 86.134 238 18 3 529 751 699845747 699845510 3.770000e-60 243.0
35 TraesCS7B01G317700 chr6B 89.510 143 12 2 532 674 199715595 199715734 1.080000e-40 178.0
36 TraesCS7B01G317700 chr6B 87.591 137 7 9 529 663 564316790 564316662 2.350000e-32 150.0
37 TraesCS7B01G317700 chr1D 89.144 654 32 14 3136 3780 361031345 361030722 0.000000e+00 778.0
38 TraesCS7B01G317700 chr1D 88.439 346 38 2 118 462 363858180 363858524 2.100000e-112 416.0
39 TraesCS7B01G317700 chr1D 91.304 115 10 0 639 753 363859026 363859140 1.410000e-34 158.0
40 TraesCS7B01G317700 chr4B 87.690 658 40 14 3137 3757 642415594 642414941 0.000000e+00 728.0
41 TraesCS7B01G317700 chr4B 90.789 76 7 0 455 530 455007855 455007780 6.680000e-18 102.0
42 TraesCS7B01G317700 chr6D 78.038 897 136 37 765 1631 4372819 4373684 3.370000e-140 508.0
43 TraesCS7B01G317700 chr6D 83.707 491 74 5 1686 2173 4373787 4374274 3.440000e-125 459.0
44 TraesCS7B01G317700 chr6D 86.891 267 35 0 1001 1267 4364281 4364015 2.210000e-77 300.0
45 TraesCS7B01G317700 chr6D 92.105 76 6 0 455 530 94320903 94320828 1.440000e-19 108.0
46 TraesCS7B01G317700 chr5D 81.359 633 73 26 3137 3758 140191738 140192336 1.230000e-129 473.0
47 TraesCS7B01G317700 chr2B 88.372 344 38 2 118 460 93046183 93046525 2.720000e-111 412.0
48 TraesCS7B01G317700 chr1B 87.572 346 40 3 118 462 615213121 615212778 7.610000e-107 398.0
49 TraesCS7B01G317700 chr1B 87.283 346 42 2 118 462 256199511 256199855 9.840000e-106 394.0
50 TraesCS7B01G317700 chr1B 91.304 115 10 0 639 753 666837436 666837322 1.410000e-34 158.0
51 TraesCS7B01G317700 chr1B 91.818 110 7 2 543 650 666837579 666837470 6.540000e-33 152.0
52 TraesCS7B01G317700 chr1B 87.500 112 14 0 642 753 115448097 115447986 3.070000e-26 130.0
53 TraesCS7B01G317700 chr1B 90.789 76 7 0 455 530 566711648 566711573 6.680000e-18 102.0
54 TraesCS7B01G317700 chr4A 84.914 232 13 4 529 739 668440413 668440643 8.230000e-52 215.0
55 TraesCS7B01G317700 chr4A 90.541 74 7 0 455 528 574160263 574160336 8.640000e-17 99.0
56 TraesCS7B01G317700 chr5A 79.935 309 31 5 1349 1633 705494980 705495281 8.280000e-47 198.0
57 TraesCS7B01G317700 chr5A 78.603 229 31 11 1041 1267 705494731 705494943 6.590000e-28 135.0
58 TraesCS7B01G317700 chr5B 91.818 110 5 4 543 650 703525091 703524984 2.350000e-32 150.0
59 TraesCS7B01G317700 chr5B 87.719 114 14 0 640 753 350484565 350484452 2.370000e-27 134.0
60 TraesCS7B01G317700 chr5B 97.727 44 1 0 77 120 468809746 468809789 4.050000e-10 76.8
61 TraesCS7B01G317700 chrUn 97.368 76 2 0 455 530 91509468 91509393 3.070000e-26 130.0
62 TraesCS7B01G317700 chrUn 89.474 76 8 0 455 530 130102254 130102179 3.110000e-16 97.1
63 TraesCS7B01G317700 chr2A 86.842 114 15 0 640 753 628580974 628581087 1.100000e-25 128.0
64 TraesCS7B01G317700 chr4D 91.892 74 6 0 457 530 365314186 365314259 1.860000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G317700 chr7B 567800209 567803989 3780 True 6983.000000 6983 100.000000 1 3781 1 chr7B.!!$R2 3780
1 TraesCS7B01G317700 chr7B 19109479 19110134 655 True 737.000000 737 87.879000 3137 3758 1 chr7B.!!$R1 621
2 TraesCS7B01G317700 chr7D 529716871 529718915 2044 True 3454.000000 3454 97.213000 754 2790 1 chr7D.!!$R1 2036
3 TraesCS7B01G317700 chr3A 599579579 599581386 1807 True 1147.500000 1951 89.834500 999 2775 2 chr3A.!!$R1 1776
4 TraesCS7B01G317700 chr7A 609261302 609263828 2526 False 1063.666667 1916 93.871667 751 2825 3 chr7A.!!$F4 2074
5 TraesCS7B01G317700 chr3B 603534851 603536866 2015 True 1124.000000 1882 84.984000 765 2775 2 chr3B.!!$R5 2010
6 TraesCS7B01G317700 chr3B 228907009 228907653 644 True 859.000000 859 90.649000 3125 3781 1 chr3B.!!$R2 656
7 TraesCS7B01G317700 chr3D 456646268 456647762 1494 True 1871.000000 1871 89.376000 1284 2775 1 chr3D.!!$R1 1491
8 TraesCS7B01G317700 chr3D 945228 946035 807 True 306.000000 438 91.407500 118 646 2 chr3D.!!$R2 528
9 TraesCS7B01G317700 chr6B 704445946 704447935 1989 True 845.500000 1170 83.937500 999 2789 2 chr6B.!!$R6 1790
10 TraesCS7B01G317700 chr6B 8234315 8236066 1751 False 734.500000 948 83.014500 835 2547 2 chr6B.!!$F2 1712
11 TraesCS7B01G317700 chr6B 8139641 8140603 962 True 383.500000 488 82.462000 1264 2197 2 chr6B.!!$R3 933
12 TraesCS7B01G317700 chr6B 699885119 699886041 922 True 328.500000 411 87.913500 136 751 2 chr6B.!!$R5 615
13 TraesCS7B01G317700 chr6B 699805607 699806529 922 True 321.000000 399 87.427000 136 751 2 chr6B.!!$R4 615
14 TraesCS7B01G317700 chr1D 361030722 361031345 623 True 778.000000 778 89.144000 3136 3780 1 chr1D.!!$R1 644
15 TraesCS7B01G317700 chr1D 363858180 363859140 960 False 287.000000 416 89.871500 118 753 2 chr1D.!!$F1 635
16 TraesCS7B01G317700 chr4B 642414941 642415594 653 True 728.000000 728 87.690000 3137 3757 1 chr4B.!!$R2 620
17 TraesCS7B01G317700 chr6D 4372819 4374274 1455 False 483.500000 508 80.872500 765 2173 2 chr6D.!!$F1 1408
18 TraesCS7B01G317700 chr5D 140191738 140192336 598 False 473.000000 473 81.359000 3137 3758 1 chr5D.!!$F1 621

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
344 346 0.108804 GTCGCAGATGAACTTCCGGA 60.109 55.0 0.00 0.0 40.67 5.14 F
713 1083 0.246360 AATCTGACGATGGACACGCA 59.754 50.0 0.00 0.0 0.00 5.24 F
1533 2016 0.317160 TGGACGTCGTGAGCAAGATT 59.683 50.0 9.92 0.0 0.00 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1514 1997 0.317160 AATCTTGCTCACGACGTCCA 59.683 50.0 10.58 0.0 0.0 4.02 R
2654 3692 0.869068 CAACGGTGATGTAAACGGCA 59.131 50.0 0.00 0.0 0.0 5.69 R
3076 4118 0.113776 TGGTTGTACTCCCTCGGTCT 59.886 55.0 0.00 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.479121 GCGCACGCGGTAAACTCG 62.479 66.667 12.47 3.82 40.19 4.18
21 22 3.834373 CGCACGCGGTAAACTCGG 61.834 66.667 12.47 0.00 35.56 4.63
22 23 3.484547 GCACGCGGTAAACTCGGG 61.485 66.667 12.47 0.00 44.37 5.14
25 26 3.955775 CGCGGTAAACTCGGGTTT 58.044 55.556 18.96 18.96 46.06 3.27
26 27 2.237416 CGCGGTAAACTCGGGTTTT 58.763 52.632 20.27 3.36 42.28 2.43
27 28 1.427435 CGCGGTAAACTCGGGTTTTA 58.573 50.000 20.27 2.32 42.28 1.52
28 29 1.797635 CGCGGTAAACTCGGGTTTTAA 59.202 47.619 20.27 0.00 42.28 1.52
29 30 2.411418 CGCGGTAAACTCGGGTTTTAAC 60.411 50.000 20.27 11.98 42.28 2.01
30 31 2.411418 GCGGTAAACTCGGGTTTTAACG 60.411 50.000 20.27 20.24 42.28 3.18
31 32 2.411418 CGGTAAACTCGGGTTTTAACGC 60.411 50.000 20.27 5.62 42.28 4.84
37 38 2.127156 GGGTTTTAACGCGTGCGG 60.127 61.111 14.98 0.68 44.69 5.69
38 39 2.797850 GGTTTTAACGCGTGCGGC 60.798 61.111 14.98 2.19 44.69 6.53
39 40 2.052060 GTTTTAACGCGTGCGGCA 60.052 55.556 14.98 0.00 43.84 5.69
40 41 1.654743 GTTTTAACGCGTGCGGCAA 60.655 52.632 14.98 8.80 43.84 4.52
41 42 1.654743 TTTTAACGCGTGCGGCAAC 60.655 52.632 14.98 0.00 43.84 4.17
42 43 2.049475 TTTTAACGCGTGCGGCAACT 62.049 50.000 14.98 0.00 43.84 3.16
43 44 2.049475 TTTAACGCGTGCGGCAACTT 62.049 50.000 14.98 5.77 43.84 2.66
44 45 2.049475 TTAACGCGTGCGGCAACTTT 62.049 50.000 14.98 2.69 43.84 2.66
45 46 2.049475 TAACGCGTGCGGCAACTTTT 62.049 50.000 14.98 4.33 43.84 2.27
46 47 3.091022 CGCGTGCGGCAACTTTTC 61.091 61.111 3.23 0.00 43.84 2.29
47 48 2.025441 GCGTGCGGCAACTTTTCA 59.975 55.556 3.23 0.00 42.87 2.69
48 49 1.371635 GCGTGCGGCAACTTTTCAT 60.372 52.632 3.23 0.00 42.87 2.57
49 50 1.608093 GCGTGCGGCAACTTTTCATG 61.608 55.000 3.23 0.00 42.87 3.07
50 51 1.608093 CGTGCGGCAACTTTTCATGC 61.608 55.000 3.23 0.00 41.82 4.06
51 52 1.371512 TGCGGCAACTTTTCATGCG 60.372 52.632 0.00 0.00 43.47 4.73
52 53 2.719774 GCGGCAACTTTTCATGCGC 61.720 57.895 0.00 0.00 43.47 6.09
53 54 1.081242 CGGCAACTTTTCATGCGCT 60.081 52.632 9.73 0.00 43.47 5.92
54 55 0.664166 CGGCAACTTTTCATGCGCTT 60.664 50.000 9.73 0.00 43.47 4.68
55 56 1.063031 GGCAACTTTTCATGCGCTTC 58.937 50.000 9.73 0.00 43.47 3.86
56 57 1.602668 GGCAACTTTTCATGCGCTTCA 60.603 47.619 9.73 0.00 43.47 3.02
57 58 1.717645 GCAACTTTTCATGCGCTTCAG 59.282 47.619 9.73 0.00 32.17 3.02
58 59 1.717645 CAACTTTTCATGCGCTTCAGC 59.282 47.619 9.73 0.00 37.78 4.26
59 60 0.242017 ACTTTTCATGCGCTTCAGCC 59.758 50.000 9.73 0.00 37.91 4.85
60 61 0.795735 CTTTTCATGCGCTTCAGCCG 60.796 55.000 9.73 0.00 37.91 5.52
61 62 2.198906 TTTTCATGCGCTTCAGCCGG 62.199 55.000 9.73 0.00 37.91 6.13
75 76 2.980475 CCGGGGCGGTAAACTACA 59.020 61.111 0.00 0.00 42.73 2.74
76 77 1.153509 CCGGGGCGGTAAACTACAG 60.154 63.158 0.00 0.00 42.73 2.74
77 78 1.812507 CGGGGCGGTAAACTACAGC 60.813 63.158 0.95 0.95 46.86 4.40
81 82 2.693285 CGGTAAACTACAGCGCGC 59.307 61.111 26.66 26.66 0.00 6.86
82 83 2.693285 GGTAAACTACAGCGCGCG 59.307 61.111 28.44 28.44 0.00 6.86
83 84 2.693285 GTAAACTACAGCGCGCGG 59.307 61.111 33.06 29.37 0.00 6.46
84 85 2.507547 TAAACTACAGCGCGCGGG 60.508 61.111 33.28 27.15 0.00 6.13
85 86 2.992273 TAAACTACAGCGCGCGGGA 61.992 57.895 33.28 26.06 0.00 5.14
86 87 2.877360 TAAACTACAGCGCGCGGGAG 62.877 60.000 36.79 36.79 0.00 4.30
88 89 4.271816 CTACAGCGCGCGGGAGAT 62.272 66.667 35.92 17.09 0.00 2.75
89 90 2.903350 TACAGCGCGCGGGAGATA 60.903 61.111 33.28 15.09 0.00 1.98
90 91 2.788172 CTACAGCGCGCGGGAGATAG 62.788 65.000 35.92 22.31 0.00 2.08
97 98 2.355244 GCGGGAGATAGCGACAGC 60.355 66.667 0.00 0.00 45.58 4.40
109 110 4.175489 GACAGCTCGCGCGGTAGA 62.175 66.667 31.69 9.72 44.62 2.59
110 111 3.471244 GACAGCTCGCGCGGTAGAT 62.471 63.158 31.69 17.46 44.62 1.98
111 112 2.278857 CAGCTCGCGCGGTAGATT 60.279 61.111 31.69 9.89 42.32 2.40
112 113 1.878522 CAGCTCGCGCGGTAGATTT 60.879 57.895 31.69 7.33 42.32 2.17
113 114 1.878522 AGCTCGCGCGGTAGATTTG 60.879 57.895 31.69 10.73 42.32 2.32
114 115 2.871427 GCTCGCGCGGTAGATTTGG 61.871 63.158 31.69 9.68 0.00 3.28
115 116 2.871427 CTCGCGCGGTAGATTTGGC 61.871 63.158 31.69 0.00 0.00 4.52
118 119 4.279535 CGCGGTAGATTTGGCGCG 62.280 66.667 0.00 0.00 42.25 6.86
119 120 4.591317 GCGGTAGATTTGGCGCGC 62.591 66.667 25.94 25.94 0.00 6.86
120 121 4.279535 CGGTAGATTTGGCGCGCG 62.280 66.667 28.44 28.44 0.00 6.86
121 122 3.192922 GGTAGATTTGGCGCGCGT 61.193 61.111 32.35 11.30 0.00 6.01
122 123 2.746803 GGTAGATTTGGCGCGCGTT 61.747 57.895 32.35 9.38 0.00 4.84
271 273 4.070552 GGCTCGTTCCAGACCGCT 62.071 66.667 0.00 0.00 0.00 5.52
344 346 0.108804 GTCGCAGATGAACTTCCGGA 60.109 55.000 0.00 0.00 40.67 5.14
346 348 1.001520 TCGCAGATGAACTTCCGGAAA 59.998 47.619 19.39 3.13 0.00 3.13
356 358 0.249741 CTTCCGGAAAGTCCACACGT 60.250 55.000 19.39 0.00 35.91 4.49
392 394 2.046023 TCGCCCCTTCGTCTCGTA 60.046 61.111 0.00 0.00 0.00 3.43
407 409 1.676529 CTCGTATGATCACGGACCAGT 59.323 52.381 0.00 0.00 42.19 4.00
411 413 1.860641 ATGATCACGGACCAGTACCA 58.139 50.000 0.00 0.00 0.00 3.25
421 423 1.271840 ACCAGTACCATGCGGACCAT 61.272 55.000 0.00 0.00 35.59 3.55
428 430 1.745115 CATGCGGACCATGTTCGGT 60.745 57.895 0.00 0.00 45.05 4.69
438 440 4.927782 TGTTCGGTTGCAGCGCCT 62.928 61.111 2.29 0.00 39.21 5.52
486 530 4.430765 CGAACGCGCCTACTGGGT 62.431 66.667 5.73 0.00 37.43 4.51
546 839 4.571580 CCGGCGTTTTACCTATTTGTATCA 59.428 41.667 6.01 0.00 0.00 2.15
707 1077 1.089481 GCGCCAAATCTGACGATGGA 61.089 55.000 0.00 0.00 34.82 3.41
713 1083 0.246360 AATCTGACGATGGACACGCA 59.754 50.000 0.00 0.00 0.00 5.24
754 1124 4.817063 CGAATTGCGCGGCTGTGG 62.817 66.667 8.83 0.00 0.00 4.17
755 1125 3.737172 GAATTGCGCGGCTGTGGT 61.737 61.111 8.83 0.00 0.00 4.16
756 1126 3.951655 GAATTGCGCGGCTGTGGTG 62.952 63.158 8.83 0.00 0.00 4.17
845 1225 2.626266 ACCGGTTCAAAAATCAGTTCCC 59.374 45.455 0.00 0.00 0.00 3.97
1279 1741 1.416813 GCTCATCGCACACTCCTTCG 61.417 60.000 0.00 0.00 38.92 3.79
1323 1800 2.593956 GGAACCTTCCCCGAGCACT 61.594 63.158 0.00 0.00 41.62 4.40
1337 1820 3.760035 CACTCCTGGTAGCGCGGT 61.760 66.667 17.70 17.70 0.00 5.68
1478 1961 2.853914 GCTCGACGCGAAAAAGCT 59.146 55.556 15.93 0.00 34.74 3.74
1533 2016 0.317160 TGGACGTCGTGAGCAAGATT 59.683 50.000 9.92 0.00 0.00 2.40
1566 2049 0.971386 GGGTCCGTGAGAGGTTTGTA 59.029 55.000 0.00 0.00 0.00 2.41
1578 2061 1.203149 AGGTTTGTACCCTCCGACTCT 60.203 52.381 0.00 0.00 46.28 3.24
2507 3518 5.604758 TCAAGATCTTCGTCATCTCCAAT 57.395 39.130 4.57 0.00 29.82 3.16
2510 3521 6.096846 TCAAGATCTTCGTCATCTCCAATACA 59.903 38.462 4.57 0.00 29.82 2.29
2585 3605 0.535102 ACCCCGTCAAGTTCAAGCTG 60.535 55.000 0.00 0.00 0.00 4.24
2654 3692 0.039764 TGGTCGTCTCCCTCATGACT 59.960 55.000 0.00 0.00 31.43 3.41
2675 3713 0.869068 CCGTTTACATCACCGTTGCA 59.131 50.000 0.00 0.00 0.00 4.08
2790 3828 5.572252 ACATCCCACTATAGCTACTACTCC 58.428 45.833 0.00 0.00 0.00 3.85
2791 3829 5.313772 ACATCCCACTATAGCTACTACTCCT 59.686 44.000 0.00 0.00 0.00 3.69
2796 3838 5.941647 CCACTATAGCTACTACTCCTCTTCC 59.058 48.000 0.00 0.00 0.00 3.46
2798 3840 6.877322 CACTATAGCTACTACTCCTCTTCCTC 59.123 46.154 0.00 0.00 0.00 3.71
2811 3853 5.398236 TCCTCTTCCTCTCTGAAAAGAAGA 58.602 41.667 10.61 10.61 40.35 2.87
2818 3860 3.995705 CTCTCTGAAAAGAAGACCTGCAG 59.004 47.826 6.78 6.78 0.00 4.41
2856 3898 9.878599 AGTTAAACGATACAAACTTCAATCAAG 57.121 29.630 0.00 0.00 38.21 3.02
2877 3919 8.212317 TCAAGTTTGTACTAAAAACTACACCC 57.788 34.615 9.49 0.00 44.93 4.61
2878 3920 7.828223 TCAAGTTTGTACTAAAAACTACACCCA 59.172 33.333 9.49 0.00 44.93 4.51
2879 3921 7.558161 AGTTTGTACTAAAAACTACACCCAC 57.442 36.000 7.78 0.00 44.10 4.61
2880 3922 7.341030 AGTTTGTACTAAAAACTACACCCACT 58.659 34.615 7.78 0.00 44.10 4.00
2881 3923 7.281549 AGTTTGTACTAAAAACTACACCCACTG 59.718 37.037 7.78 0.00 44.10 3.66
2882 3924 6.237887 TGTACTAAAAACTACACCCACTGT 57.762 37.500 0.00 0.00 36.82 3.55
2883 3925 6.652053 TGTACTAAAAACTACACCCACTGTT 58.348 36.000 0.00 0.00 33.91 3.16
2884 3926 6.762661 TGTACTAAAAACTACACCCACTGTTC 59.237 38.462 0.00 0.00 33.91 3.18
2885 3927 5.747342 ACTAAAAACTACACCCACTGTTCA 58.253 37.500 0.00 0.00 33.91 3.18
2886 3928 6.362248 ACTAAAAACTACACCCACTGTTCAT 58.638 36.000 0.00 0.00 33.91 2.57
2887 3929 5.767816 AAAAACTACACCCACTGTTCATC 57.232 39.130 0.00 0.00 33.91 2.92
2888 3930 4.706842 AAACTACACCCACTGTTCATCT 57.293 40.909 0.00 0.00 33.91 2.90
2889 3931 5.818678 AAACTACACCCACTGTTCATCTA 57.181 39.130 0.00 0.00 33.91 1.98
2890 3932 5.818678 AACTACACCCACTGTTCATCTAA 57.181 39.130 0.00 0.00 33.91 2.10
2891 3933 6.374417 AACTACACCCACTGTTCATCTAAT 57.626 37.500 0.00 0.00 33.91 1.73
2892 3934 7.490657 AACTACACCCACTGTTCATCTAATA 57.509 36.000 0.00 0.00 33.91 0.98
2893 3935 7.676683 ACTACACCCACTGTTCATCTAATAT 57.323 36.000 0.00 0.00 33.91 1.28
2894 3936 8.777578 ACTACACCCACTGTTCATCTAATATA 57.222 34.615 0.00 0.00 33.91 0.86
2895 3937 9.209048 ACTACACCCACTGTTCATCTAATATAA 57.791 33.333 0.00 0.00 33.91 0.98
2896 3938 9.698309 CTACACCCACTGTTCATCTAATATAAG 57.302 37.037 0.00 0.00 33.91 1.73
2897 3939 8.319057 ACACCCACTGTTCATCTAATATAAGA 57.681 34.615 0.00 0.00 0.00 2.10
2898 3940 8.938883 ACACCCACTGTTCATCTAATATAAGAT 58.061 33.333 0.00 0.00 36.64 2.40
2929 3971 9.255304 TGGTAATTCAATTTAAACTGTCAAAGC 57.745 29.630 0.00 0.00 0.00 3.51
2930 3972 9.255304 GGTAATTCAATTTAAACTGTCAAAGCA 57.745 29.630 0.00 0.00 0.00 3.91
2933 3975 9.768662 AATTCAATTTAAACTGTCAAAGCATCT 57.231 25.926 0.00 0.00 0.00 2.90
2934 3976 9.768662 ATTCAATTTAAACTGTCAAAGCATCTT 57.231 25.926 0.00 0.00 0.00 2.40
3014 4056 9.696917 AATTTGTAGTTGTTGATGATTCTTTCC 57.303 29.630 0.00 0.00 0.00 3.13
3015 4057 7.815840 TTGTAGTTGTTGATGATTCTTTCCA 57.184 32.000 0.00 0.00 0.00 3.53
3016 4058 7.202016 TGTAGTTGTTGATGATTCTTTCCAC 57.798 36.000 0.00 0.00 0.00 4.02
3017 4059 6.770303 TGTAGTTGTTGATGATTCTTTCCACA 59.230 34.615 0.00 0.00 0.00 4.17
3018 4060 6.713762 AGTTGTTGATGATTCTTTCCACAA 57.286 33.333 4.07 4.07 0.00 3.33
3019 4061 7.111247 AGTTGTTGATGATTCTTTCCACAAA 57.889 32.000 7.76 0.00 0.00 2.83
3020 4062 6.980397 AGTTGTTGATGATTCTTTCCACAAAC 59.020 34.615 7.76 0.00 0.00 2.93
3021 4063 6.713762 TGTTGATGATTCTTTCCACAAACT 57.286 33.333 0.00 0.00 0.00 2.66
3022 4064 7.111247 TGTTGATGATTCTTTCCACAAACTT 57.889 32.000 0.00 0.00 0.00 2.66
3023 4065 6.979817 TGTTGATGATTCTTTCCACAAACTTG 59.020 34.615 0.00 0.00 0.00 3.16
3024 4066 6.088016 TGATGATTCTTTCCACAAACTTGG 57.912 37.500 0.00 0.00 38.10 3.61
3025 4067 5.598005 TGATGATTCTTTCCACAAACTTGGT 59.402 36.000 0.00 0.00 37.93 3.67
3026 4068 5.514274 TGATTCTTTCCACAAACTTGGTC 57.486 39.130 0.00 0.00 37.93 4.02
3027 4069 4.952957 TGATTCTTTCCACAAACTTGGTCA 59.047 37.500 0.00 0.00 37.93 4.02
3028 4070 5.420421 TGATTCTTTCCACAAACTTGGTCAA 59.580 36.000 0.00 0.00 37.93 3.18
3029 4071 5.730296 TTCTTTCCACAAACTTGGTCAAA 57.270 34.783 0.00 0.00 37.93 2.69
3030 4072 5.066968 TCTTTCCACAAACTTGGTCAAAC 57.933 39.130 0.00 0.00 37.93 2.93
3031 4073 4.770010 TCTTTCCACAAACTTGGTCAAACT 59.230 37.500 0.00 0.00 37.93 2.66
3032 4074 5.946972 TCTTTCCACAAACTTGGTCAAACTA 59.053 36.000 0.00 0.00 37.93 2.24
3033 4075 6.605594 TCTTTCCACAAACTTGGTCAAACTAT 59.394 34.615 0.00 0.00 37.93 2.12
3034 4076 6.783708 TTCCACAAACTTGGTCAAACTATT 57.216 33.333 0.00 0.00 37.93 1.73
3035 4077 6.385649 TCCACAAACTTGGTCAAACTATTC 57.614 37.500 0.00 0.00 37.93 1.75
3036 4078 5.888724 TCCACAAACTTGGTCAAACTATTCA 59.111 36.000 0.00 0.00 37.93 2.57
3037 4079 6.549364 TCCACAAACTTGGTCAAACTATTCAT 59.451 34.615 0.00 0.00 37.93 2.57
3038 4080 6.863126 CCACAAACTTGGTCAAACTATTCATC 59.137 38.462 0.00 0.00 0.00 2.92
3039 4081 7.424803 CACAAACTTGGTCAAACTATTCATCA 58.575 34.615 0.00 0.00 0.00 3.07
3040 4082 8.084073 CACAAACTTGGTCAAACTATTCATCAT 58.916 33.333 0.00 0.00 0.00 2.45
3041 4083 8.641541 ACAAACTTGGTCAAACTATTCATCATT 58.358 29.630 0.00 0.00 0.00 2.57
3042 4084 9.480053 CAAACTTGGTCAAACTATTCATCATTT 57.520 29.630 0.00 0.00 0.00 2.32
3043 4085 9.480053 AAACTTGGTCAAACTATTCATCATTTG 57.520 29.630 0.00 0.00 34.11 2.32
3044 4086 8.408043 ACTTGGTCAAACTATTCATCATTTGA 57.592 30.769 0.00 0.00 38.42 2.69
3049 4091 7.307493 TCAAACTATTCATCATTTGACTCGG 57.693 36.000 0.00 0.00 36.42 4.63
3050 4092 7.102993 TCAAACTATTCATCATTTGACTCGGA 58.897 34.615 0.00 0.00 36.42 4.55
3051 4093 6.910536 AACTATTCATCATTTGACTCGGAC 57.089 37.500 0.00 0.00 32.84 4.79
3052 4094 5.977635 ACTATTCATCATTTGACTCGGACA 58.022 37.500 0.00 0.00 32.84 4.02
3053 4095 6.406370 ACTATTCATCATTTGACTCGGACAA 58.594 36.000 0.00 0.00 32.84 3.18
3054 4096 6.878923 ACTATTCATCATTTGACTCGGACAAA 59.121 34.615 0.00 0.00 40.62 2.83
3055 4097 6.573664 ATTCATCATTTGACTCGGACAAAA 57.426 33.333 0.00 0.00 39.95 2.44
3056 4098 6.384258 TTCATCATTTGACTCGGACAAAAA 57.616 33.333 0.00 0.00 39.95 1.94
3057 4099 6.573664 TCATCATTTGACTCGGACAAAAAT 57.426 33.333 0.00 0.00 39.95 1.82
3058 4100 6.980593 TCATCATTTGACTCGGACAAAAATT 58.019 32.000 0.00 0.00 39.95 1.82
3059 4101 7.083858 TCATCATTTGACTCGGACAAAAATTC 58.916 34.615 0.00 0.00 39.95 2.17
3060 4102 5.768317 TCATTTGACTCGGACAAAAATTCC 58.232 37.500 0.00 0.00 39.95 3.01
3061 4103 5.300539 TCATTTGACTCGGACAAAAATTCCA 59.699 36.000 0.00 0.00 39.95 3.53
3062 4104 5.584253 TTTGACTCGGACAAAAATTCCAA 57.416 34.783 0.00 0.00 34.89 3.53
3063 4105 5.584253 TTGACTCGGACAAAAATTCCAAA 57.416 34.783 0.00 0.00 31.94 3.28
3064 4106 4.927422 TGACTCGGACAAAAATTCCAAAC 58.073 39.130 0.00 0.00 31.94 2.93
3065 4107 4.202070 TGACTCGGACAAAAATTCCAAACC 60.202 41.667 0.00 0.00 31.94 3.27
3066 4108 3.069016 ACTCGGACAAAAATTCCAAACCC 59.931 43.478 0.00 0.00 31.94 4.11
3067 4109 3.301274 TCGGACAAAAATTCCAAACCCT 58.699 40.909 0.00 0.00 31.94 4.34
3068 4110 3.319689 TCGGACAAAAATTCCAAACCCTC 59.680 43.478 0.00 0.00 31.94 4.30
3069 4111 3.320826 CGGACAAAAATTCCAAACCCTCT 59.679 43.478 0.00 0.00 31.94 3.69
3070 4112 4.202212 CGGACAAAAATTCCAAACCCTCTT 60.202 41.667 0.00 0.00 31.94 2.85
3071 4113 5.680619 GGACAAAAATTCCAAACCCTCTTT 58.319 37.500 0.00 0.00 32.82 2.52
3072 4114 6.119536 GGACAAAAATTCCAAACCCTCTTTT 58.880 36.000 0.00 0.00 32.82 2.27
3073 4115 6.260050 GGACAAAAATTCCAAACCCTCTTTTC 59.740 38.462 0.00 0.00 32.82 2.29
3074 4116 6.716284 ACAAAAATTCCAAACCCTCTTTTCA 58.284 32.000 0.00 0.00 0.00 2.69
3075 4117 6.823182 ACAAAAATTCCAAACCCTCTTTTCAG 59.177 34.615 0.00 0.00 0.00 3.02
3076 4118 6.806668 AAAATTCCAAACCCTCTTTTCAGA 57.193 33.333 0.00 0.00 0.00 3.27
3077 4119 6.410942 AAATTCCAAACCCTCTTTTCAGAG 57.589 37.500 0.00 0.00 45.79 3.35
3086 4128 2.304221 TCTTTTCAGAGACCGAGGGA 57.696 50.000 0.00 0.00 0.00 4.20
3087 4129 2.171840 TCTTTTCAGAGACCGAGGGAG 58.828 52.381 0.00 0.00 0.00 4.30
3088 4130 1.896465 CTTTTCAGAGACCGAGGGAGT 59.104 52.381 0.00 0.00 0.00 3.85
3089 4131 2.893215 TTTCAGAGACCGAGGGAGTA 57.107 50.000 0.00 0.00 0.00 2.59
3090 4132 2.125773 TTCAGAGACCGAGGGAGTAC 57.874 55.000 0.00 0.00 0.00 2.73
3091 4133 0.989602 TCAGAGACCGAGGGAGTACA 59.010 55.000 0.00 0.00 0.00 2.90
3092 4134 1.353358 TCAGAGACCGAGGGAGTACAA 59.647 52.381 0.00 0.00 0.00 2.41
3093 4135 1.473278 CAGAGACCGAGGGAGTACAAC 59.527 57.143 0.00 0.00 0.00 3.32
3094 4136 0.816373 GAGACCGAGGGAGTACAACC 59.184 60.000 0.00 0.00 0.00 3.77
3095 4137 0.113776 AGACCGAGGGAGTACAACCA 59.886 55.000 8.35 0.00 0.00 3.67
3096 4138 0.971386 GACCGAGGGAGTACAACCAA 59.029 55.000 8.35 0.00 0.00 3.67
3097 4139 0.683412 ACCGAGGGAGTACAACCAAC 59.317 55.000 8.35 2.10 0.00 3.77
3098 4140 0.389426 CCGAGGGAGTACAACCAACG 60.389 60.000 8.35 11.55 0.00 4.10
3099 4141 0.316204 CGAGGGAGTACAACCAACGT 59.684 55.000 8.35 0.00 0.00 3.99
3100 4142 1.541147 CGAGGGAGTACAACCAACGTA 59.459 52.381 8.35 0.00 0.00 3.57
3101 4143 2.669391 CGAGGGAGTACAACCAACGTAC 60.669 54.545 8.35 0.00 39.64 3.67
3102 4144 1.270550 AGGGAGTACAACCAACGTACG 59.729 52.381 15.01 15.01 43.24 3.67
3103 4145 1.063031 GGAGTACAACCAACGTACGC 58.937 55.000 16.72 0.00 43.24 4.42
3104 4146 1.602668 GGAGTACAACCAACGTACGCA 60.603 52.381 16.72 0.00 43.24 5.24
3105 4147 2.126467 GAGTACAACCAACGTACGCAA 58.874 47.619 16.72 0.00 43.24 4.85
3106 4148 2.129607 AGTACAACCAACGTACGCAAG 58.870 47.619 16.72 6.31 43.24 4.01
3107 4149 2.126467 GTACAACCAACGTACGCAAGA 58.874 47.619 16.72 0.00 43.62 3.02
3108 4150 1.654317 ACAACCAACGTACGCAAGAA 58.346 45.000 16.72 0.00 43.62 2.52
3109 4151 2.008329 ACAACCAACGTACGCAAGAAA 58.992 42.857 16.72 0.00 43.62 2.52
3110 4152 2.223089 ACAACCAACGTACGCAAGAAAC 60.223 45.455 16.72 0.00 43.62 2.78
3111 4153 1.654317 ACCAACGTACGCAAGAAACA 58.346 45.000 16.72 0.00 43.62 2.83
3112 4154 2.008329 ACCAACGTACGCAAGAAACAA 58.992 42.857 16.72 0.00 43.62 2.83
3113 4155 2.223089 ACCAACGTACGCAAGAAACAAC 60.223 45.455 16.72 0.00 43.62 3.32
3114 4156 2.223066 CCAACGTACGCAAGAAACAACA 60.223 45.455 16.72 0.00 43.62 3.33
3115 4157 2.724744 ACGTACGCAAGAAACAACAC 57.275 45.000 16.72 0.00 43.62 3.32
3116 4158 2.001159 ACGTACGCAAGAAACAACACA 58.999 42.857 16.72 0.00 43.62 3.72
3117 4159 2.610374 ACGTACGCAAGAAACAACACAT 59.390 40.909 16.72 0.00 43.62 3.21
3118 4160 3.803231 ACGTACGCAAGAAACAACACATA 59.197 39.130 16.72 0.00 43.62 2.29
3119 4161 4.084745 ACGTACGCAAGAAACAACACATAG 60.085 41.667 16.72 0.00 43.62 2.23
3120 4162 4.149221 CGTACGCAAGAAACAACACATAGA 59.851 41.667 0.52 0.00 43.62 1.98
3121 4163 4.732285 ACGCAAGAAACAACACATAGAG 57.268 40.909 0.00 0.00 43.62 2.43
3122 4164 4.377021 ACGCAAGAAACAACACATAGAGA 58.623 39.130 0.00 0.00 43.62 3.10
3123 4165 4.449068 ACGCAAGAAACAACACATAGAGAG 59.551 41.667 0.00 0.00 43.62 3.20
3131 4173 5.536554 ACAACACATAGAGAGCAATTTCG 57.463 39.130 0.00 0.00 0.00 3.46
3132 4174 5.237815 ACAACACATAGAGAGCAATTTCGA 58.762 37.500 0.00 0.00 0.00 3.71
3133 4175 5.877012 ACAACACATAGAGAGCAATTTCGAT 59.123 36.000 0.00 0.00 0.00 3.59
3277 4320 1.269723 CTCCACGCTCGATATTGCCTA 59.730 52.381 0.00 0.00 0.00 3.93
3344 4387 4.860881 TAGCCAGAGCCCCTCCCG 62.861 72.222 0.00 0.00 41.25 5.14
3359 4402 2.441348 CCGCCCAAACATACCCCC 60.441 66.667 0.00 0.00 0.00 5.40
3361 4404 1.000145 CGCCCAAACATACCCCCTT 60.000 57.895 0.00 0.00 0.00 3.95
3362 4405 1.035385 CGCCCAAACATACCCCCTTC 61.035 60.000 0.00 0.00 0.00 3.46
3363 4406 1.035385 GCCCAAACATACCCCCTTCG 61.035 60.000 0.00 0.00 0.00 3.79
3444 4519 0.460987 CGCAGGTGAGTTCCATCCTC 60.461 60.000 0.00 0.00 0.00 3.71
3445 4520 0.107459 GCAGGTGAGTTCCATCCTCC 60.107 60.000 0.00 0.00 0.00 4.30
3446 4521 1.577736 CAGGTGAGTTCCATCCTCCT 58.422 55.000 0.00 0.00 0.00 3.69
3450 4525 2.192263 GTGAGTTCCATCCTCCTCCTT 58.808 52.381 0.00 0.00 0.00 3.36
3532 4608 3.866582 GTCTCCCTGCCATCCCGG 61.867 72.222 0.00 0.00 38.11 5.73
3632 4712 0.754957 CCAACCAGTGCTTGAACCCA 60.755 55.000 0.00 0.00 0.00 4.51
3647 4727 2.677228 CCAATCTGGAACGCCCCT 59.323 61.111 0.00 0.00 40.96 4.79
3653 4734 2.281208 TGGAACGCCCCTTGTTCG 60.281 61.111 0.35 0.00 45.19 3.95
3666 4751 2.754658 GTTCGCTCTCCCCTCGGA 60.755 66.667 0.00 0.00 36.45 4.55
3728 4824 0.829990 TCTTGCAGGTCACTGTGTGA 59.170 50.000 7.79 0.00 46.62 3.58
3762 4859 4.382685 CCTTCTCAGTAGCCCGATTAACAA 60.383 45.833 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.223417 AAACCCGAGTTTACCGCGTG 61.223 55.000 4.92 0.00 44.44 5.34
9 10 2.411418 CGTTAAAACCCGAGTTTACCGC 60.411 50.000 0.00 0.00 45.54 5.68
10 11 2.411418 GCGTTAAAACCCGAGTTTACCG 60.411 50.000 0.00 0.18 45.54 4.02
11 12 2.411418 CGCGTTAAAACCCGAGTTTACC 60.411 50.000 0.00 0.00 45.54 2.85
12 13 2.220824 ACGCGTTAAAACCCGAGTTTAC 59.779 45.455 5.58 0.00 45.54 2.01
13 14 2.220593 CACGCGTTAAAACCCGAGTTTA 59.779 45.455 10.22 0.00 45.54 2.01
15 16 0.582960 CACGCGTTAAAACCCGAGTT 59.417 50.000 10.22 0.00 34.91 3.01
16 17 1.834458 GCACGCGTTAAAACCCGAGT 61.834 55.000 10.22 0.00 37.59 4.18
17 18 1.154543 GCACGCGTTAAAACCCGAG 60.155 57.895 10.22 0.00 34.54 4.63
18 19 2.937486 GCACGCGTTAAAACCCGA 59.063 55.556 10.22 0.00 34.54 5.14
19 20 2.498046 CGCACGCGTTAAAACCCG 60.498 61.111 10.22 0.00 36.36 5.28
20 21 2.127156 CCGCACGCGTTAAAACCC 60.127 61.111 10.22 0.00 37.81 4.11
21 22 2.797850 GCCGCACGCGTTAAAACC 60.798 61.111 10.22 0.00 37.81 3.27
22 23 1.654743 TTGCCGCACGCGTTAAAAC 60.655 52.632 10.22 0.00 42.08 2.43
23 24 1.654743 GTTGCCGCACGCGTTAAAA 60.655 52.632 10.22 0.00 42.08 1.52
24 25 2.049475 AAGTTGCCGCACGCGTTAAA 62.049 50.000 10.22 0.00 42.08 1.52
25 26 2.049475 AAAGTTGCCGCACGCGTTAA 62.049 50.000 10.22 2.24 42.08 2.01
26 27 2.049475 AAAAGTTGCCGCACGCGTTA 62.049 50.000 10.22 0.00 42.08 3.18
27 28 3.404141 AAAAGTTGCCGCACGCGTT 62.404 52.632 10.22 0.00 42.08 4.84
28 29 3.800323 GAAAAGTTGCCGCACGCGT 62.800 57.895 5.58 5.58 42.08 6.01
29 30 3.091022 GAAAAGTTGCCGCACGCG 61.091 61.111 3.53 3.53 42.08 6.01
30 31 1.371635 ATGAAAAGTTGCCGCACGC 60.372 52.632 0.00 0.00 38.31 5.34
31 32 1.608093 GCATGAAAAGTTGCCGCACG 61.608 55.000 0.00 0.00 0.00 5.34
32 33 1.608093 CGCATGAAAAGTTGCCGCAC 61.608 55.000 0.00 0.00 0.00 5.34
33 34 1.371512 CGCATGAAAAGTTGCCGCA 60.372 52.632 0.00 0.00 0.00 5.69
34 35 2.719774 GCGCATGAAAAGTTGCCGC 61.720 57.895 0.30 0.00 0.00 6.53
35 36 0.664166 AAGCGCATGAAAAGTTGCCG 60.664 50.000 11.47 0.00 0.00 5.69
36 37 1.063031 GAAGCGCATGAAAAGTTGCC 58.937 50.000 11.47 0.00 0.00 4.52
37 38 1.717645 CTGAAGCGCATGAAAAGTTGC 59.282 47.619 11.47 0.00 0.00 4.17
38 39 1.717645 GCTGAAGCGCATGAAAAGTTG 59.282 47.619 11.47 0.00 0.00 3.16
39 40 1.336240 GGCTGAAGCGCATGAAAAGTT 60.336 47.619 11.47 0.00 43.26 2.66
40 41 0.242017 GGCTGAAGCGCATGAAAAGT 59.758 50.000 11.47 0.00 43.26 2.66
41 42 0.795735 CGGCTGAAGCGCATGAAAAG 60.796 55.000 11.47 0.00 43.26 2.27
42 43 1.209898 CGGCTGAAGCGCATGAAAA 59.790 52.632 11.47 0.00 43.26 2.29
43 44 2.689785 CCGGCTGAAGCGCATGAAA 61.690 57.895 11.47 0.00 43.26 2.69
44 45 3.126879 CCGGCTGAAGCGCATGAA 61.127 61.111 11.47 0.00 43.26 2.57
59 60 1.812507 GCTGTAGTTTACCGCCCCG 60.813 63.158 0.00 0.00 33.49 5.73
60 61 1.812507 CGCTGTAGTTTACCGCCCC 60.813 63.158 0.00 0.00 35.79 5.80
61 62 2.458610 GCGCTGTAGTTTACCGCCC 61.459 63.158 0.00 0.00 38.84 6.13
62 63 2.795389 CGCGCTGTAGTTTACCGCC 61.795 63.158 5.56 0.00 41.43 6.13
63 64 2.693285 CGCGCTGTAGTTTACCGC 59.307 61.111 5.56 0.00 41.10 5.68
64 65 2.693285 GCGCGCTGTAGTTTACCG 59.307 61.111 26.67 0.00 0.00 4.02
65 66 2.693285 CGCGCGCTGTAGTTTACC 59.307 61.111 30.48 0.00 0.00 2.85
66 67 2.693285 CCGCGCGCTGTAGTTTAC 59.307 61.111 30.48 0.00 0.00 2.01
67 68 2.507547 CCCGCGCGCTGTAGTTTA 60.508 61.111 30.48 0.00 0.00 2.01
68 69 4.367023 TCCCGCGCGCTGTAGTTT 62.367 61.111 30.48 0.00 0.00 2.66
69 70 4.796231 CTCCCGCGCGCTGTAGTT 62.796 66.667 30.48 0.00 0.00 2.24
71 72 2.788172 CTATCTCCCGCGCGCTGTAG 62.788 65.000 30.48 19.47 0.00 2.74
72 73 2.903350 TATCTCCCGCGCGCTGTA 60.903 61.111 30.48 8.88 0.00 2.74
73 74 4.271816 CTATCTCCCGCGCGCTGT 62.272 66.667 30.48 9.14 0.00 4.40
80 81 2.355244 GCTGTCGCTATCTCCCGC 60.355 66.667 0.00 0.00 0.00 6.13
81 82 3.437867 AGCTGTCGCTATCTCCCG 58.562 61.111 0.00 0.00 46.79 5.14
97 98 2.871427 GCCAAATCTACCGCGCGAG 61.871 63.158 34.63 22.32 0.00 5.03
98 99 2.888534 GCCAAATCTACCGCGCGA 60.889 61.111 34.63 12.32 0.00 5.87
99 100 4.279535 CGCCAAATCTACCGCGCG 62.280 66.667 25.67 25.67 37.97 6.86
102 103 4.591317 GCGCGCCAAATCTACCGC 62.591 66.667 23.24 0.00 42.71 5.68
103 104 4.279535 CGCGCGCCAAATCTACCG 62.280 66.667 27.72 2.72 0.00 4.02
104 105 2.627201 GAACGCGCGCCAAATCTACC 62.627 60.000 32.58 2.75 0.00 3.18
105 106 1.296649 GAACGCGCGCCAAATCTAC 60.297 57.895 32.58 6.83 0.00 2.59
106 107 2.457778 GGAACGCGCGCCAAATCTA 61.458 57.895 32.58 0.00 0.00 1.98
107 108 3.799755 GGAACGCGCGCCAAATCT 61.800 61.111 32.58 5.07 0.00 2.40
108 109 4.096558 TGGAACGCGCGCCAAATC 62.097 61.111 32.58 19.35 0.00 2.17
109 110 4.101790 CTGGAACGCGCGCCAAAT 62.102 61.111 32.58 11.33 32.95 2.32
344 346 0.741574 TGTTCGCACGTGTGGACTTT 60.742 50.000 33.91 0.00 35.15 2.66
346 348 1.591594 CTGTTCGCACGTGTGGACT 60.592 57.895 33.91 0.00 35.15 3.85
383 385 1.596260 GTCCGTGATCATACGAGACGA 59.404 52.381 7.25 0.00 46.46 4.20
386 388 1.947456 CTGGTCCGTGATCATACGAGA 59.053 52.381 7.25 1.14 46.46 4.04
392 394 1.860641 TGGTACTGGTCCGTGATCAT 58.139 50.000 0.00 0.00 0.00 2.45
407 409 0.461163 CGAACATGGTCCGCATGGTA 60.461 55.000 4.85 0.00 36.30 3.25
411 413 1.002624 AACCGAACATGGTCCGCAT 60.003 52.632 4.85 0.00 42.89 4.73
421 423 4.927782 AGGCGCTGCAACCGAACA 62.928 61.111 7.64 0.00 0.00 3.18
428 430 4.087892 GAGGAGGAGGCGCTGCAA 62.088 66.667 7.64 0.00 0.00 4.08
465 509 1.731613 CAGTAGGCGCGTTCGTTGA 60.732 57.895 8.36 0.00 38.14 3.18
486 530 3.706373 GCCTTGCCGTCCTCTCCA 61.706 66.667 0.00 0.00 0.00 3.86
620 913 2.916716 CGCAAGTCCATATTTGTTGCAC 59.083 45.455 6.22 0.00 42.96 4.57
650 1020 1.333619 CCAGCAACCGCGCTAAAATAT 59.666 47.619 5.56 0.00 45.49 1.28
696 1066 0.666274 GTTGCGTGTCCATCGTCAGA 60.666 55.000 0.00 0.00 0.00 3.27
707 1077 5.032220 GCTAAAAAGTAGTTTGTTGCGTGT 58.968 37.500 4.24 0.00 0.00 4.49
713 1083 3.294102 GCGCGCTAAAAAGTAGTTTGTT 58.706 40.909 26.67 0.00 0.00 2.83
739 1109 4.041917 CACCACAGCCGCGCAATT 62.042 61.111 8.75 0.00 0.00 2.32
753 1123 2.024176 ATATGCCTCACGTTGTCACC 57.976 50.000 0.00 0.00 0.00 4.02
754 1124 2.864343 GGTATATGCCTCACGTTGTCAC 59.136 50.000 2.01 0.00 0.00 3.67
755 1125 2.498078 TGGTATATGCCTCACGTTGTCA 59.502 45.455 11.44 0.00 0.00 3.58
756 1126 3.173668 TGGTATATGCCTCACGTTGTC 57.826 47.619 11.44 0.00 0.00 3.18
757 1127 3.267483 GTTGGTATATGCCTCACGTTGT 58.733 45.455 11.44 0.00 0.00 3.32
758 1128 2.284150 CGTTGGTATATGCCTCACGTTG 59.716 50.000 19.80 1.49 33.89 4.10
759 1129 2.093869 ACGTTGGTATATGCCTCACGTT 60.094 45.455 24.66 14.66 42.34 3.99
760 1130 1.479323 ACGTTGGTATATGCCTCACGT 59.521 47.619 24.66 24.66 41.17 4.49
845 1225 1.251251 CTTGCTTCCCCCTTGAACTG 58.749 55.000 0.00 0.00 0.00 3.16
1168 1600 4.481195 GAGCAGCTTGTGGTCCAA 57.519 55.556 0.00 0.00 46.33 3.53
1478 1961 2.658268 CGATATGCAGCGGCGACA 60.658 61.111 12.98 5.46 45.35 4.35
1514 1997 0.317160 AATCTTGCTCACGACGTCCA 59.683 50.000 10.58 0.00 0.00 4.02
1533 2016 2.204136 ACCCAGGGATGGCTGACA 60.204 61.111 14.54 0.00 0.00 3.58
1566 2049 1.979693 GCTGACAGAGTCGGAGGGT 60.980 63.158 6.65 0.00 41.05 4.34
2111 3113 3.512223 GATGAGGAGCAGCGCCGAT 62.512 63.158 9.85 5.99 0.00 4.18
2150 3152 3.235481 TCCCGGTTGAGGACGCAA 61.235 61.111 0.00 0.00 0.00 4.85
2212 3214 1.415200 GTAGGTGTCCATCTCCTCCC 58.585 60.000 0.00 0.00 40.14 4.30
2300 3302 1.226974 CGACTGGTAGGTGGCGATG 60.227 63.158 0.00 0.00 0.00 3.84
2481 3492 5.171476 GGAGATGACGAAGATCTTGAACAA 58.829 41.667 14.00 0.00 29.97 2.83
2482 3493 4.220602 TGGAGATGACGAAGATCTTGAACA 59.779 41.667 14.00 9.78 29.97 3.18
2507 3518 1.675310 GCTGCACATGGCCACTGTA 60.675 57.895 8.16 5.07 43.89 2.74
2510 3521 2.360852 GAGCTGCACATGGCCACT 60.361 61.111 8.16 0.00 43.89 4.00
2585 3605 2.273449 CCCCACATGAGCTGGTCC 59.727 66.667 0.00 0.00 0.00 4.46
2654 3692 0.869068 CAACGGTGATGTAAACGGCA 59.131 50.000 0.00 0.00 0.00 5.69
2790 3828 5.245977 AGGTCTTCTTTTCAGAGAGGAAGAG 59.754 44.000 13.98 0.00 41.62 2.85
2791 3829 5.011533 CAGGTCTTCTTTTCAGAGAGGAAGA 59.988 44.000 10.54 10.54 39.65 2.87
2796 3838 3.995705 CTGCAGGTCTTCTTTTCAGAGAG 59.004 47.826 5.57 0.00 0.00 3.20
2798 3840 3.737850 ACTGCAGGTCTTCTTTTCAGAG 58.262 45.455 19.93 0.00 0.00 3.35
2830 3872 9.878599 CTTGATTGAAGTTTGTATCGTTTAACT 57.121 29.630 0.00 0.00 32.52 2.24
2831 3873 9.659830 ACTTGATTGAAGTTTGTATCGTTTAAC 57.340 29.630 0.00 0.00 42.70 2.01
2851 3893 8.843262 GGGTGTAGTTTTTAGTACAAACTTGAT 58.157 33.333 17.26 0.00 40.83 2.57
2852 3894 7.828223 TGGGTGTAGTTTTTAGTACAAACTTGA 59.172 33.333 17.26 4.68 40.83 3.02
2853 3895 7.911727 GTGGGTGTAGTTTTTAGTACAAACTTG 59.088 37.037 17.26 0.00 40.83 3.16
2854 3896 7.830697 AGTGGGTGTAGTTTTTAGTACAAACTT 59.169 33.333 17.26 4.98 40.83 2.66
2855 3897 7.281549 CAGTGGGTGTAGTTTTTAGTACAAACT 59.718 37.037 16.49 16.49 44.78 2.66
2856 3898 7.066163 ACAGTGGGTGTAGTTTTTAGTACAAAC 59.934 37.037 4.09 4.09 37.75 2.93
2857 3899 7.111466 ACAGTGGGTGTAGTTTTTAGTACAAA 58.889 34.615 0.00 0.00 37.75 2.83
2858 3900 6.652053 ACAGTGGGTGTAGTTTTTAGTACAA 58.348 36.000 0.00 0.00 37.75 2.41
2859 3901 6.237887 ACAGTGGGTGTAGTTTTTAGTACA 57.762 37.500 0.00 0.00 37.75 2.90
2860 3902 6.762661 TGAACAGTGGGTGTAGTTTTTAGTAC 59.237 38.462 0.00 0.00 39.03 2.73
2861 3903 6.887013 TGAACAGTGGGTGTAGTTTTTAGTA 58.113 36.000 0.00 0.00 39.03 1.82
2862 3904 5.747342 TGAACAGTGGGTGTAGTTTTTAGT 58.253 37.500 0.00 0.00 39.03 2.24
2863 3905 6.710744 AGATGAACAGTGGGTGTAGTTTTTAG 59.289 38.462 0.00 0.00 39.03 1.85
2864 3906 6.597562 AGATGAACAGTGGGTGTAGTTTTTA 58.402 36.000 0.00 0.00 39.03 1.52
2865 3907 5.445964 AGATGAACAGTGGGTGTAGTTTTT 58.554 37.500 0.00 0.00 39.03 1.94
2866 3908 5.048846 AGATGAACAGTGGGTGTAGTTTT 57.951 39.130 0.00 0.00 39.03 2.43
2867 3909 4.706842 AGATGAACAGTGGGTGTAGTTT 57.293 40.909 0.00 0.00 39.03 2.66
2868 3910 5.818678 TTAGATGAACAGTGGGTGTAGTT 57.181 39.130 0.00 0.00 39.03 2.24
2869 3911 7.676683 ATATTAGATGAACAGTGGGTGTAGT 57.323 36.000 0.00 0.00 39.03 2.73
2870 3912 9.698309 CTTATATTAGATGAACAGTGGGTGTAG 57.302 37.037 0.00 0.00 39.03 2.74
2871 3913 9.429109 TCTTATATTAGATGAACAGTGGGTGTA 57.571 33.333 0.00 0.00 39.03 2.90
2872 3914 8.319057 TCTTATATTAGATGAACAGTGGGTGT 57.681 34.615 0.00 0.00 43.24 4.16
2903 3945 9.255304 GCTTTGACAGTTTAAATTGAATTACCA 57.745 29.630 16.68 3.23 0.00 3.25
2904 3946 9.255304 TGCTTTGACAGTTTAAATTGAATTACC 57.745 29.630 16.68 2.98 0.00 2.85
2907 3949 9.768662 AGATGCTTTGACAGTTTAAATTGAATT 57.231 25.926 16.68 0.00 0.00 2.17
2908 3950 9.768662 AAGATGCTTTGACAGTTTAAATTGAAT 57.231 25.926 16.68 0.00 0.00 2.57
2988 4030 9.696917 GGAAAGAATCATCAACAACTACAAATT 57.303 29.630 0.00 0.00 0.00 1.82
2989 4031 8.859090 TGGAAAGAATCATCAACAACTACAAAT 58.141 29.630 0.00 0.00 0.00 2.32
2990 4032 8.134895 GTGGAAAGAATCATCAACAACTACAAA 58.865 33.333 0.00 0.00 0.00 2.83
2991 4033 7.284261 TGTGGAAAGAATCATCAACAACTACAA 59.716 33.333 0.00 0.00 0.00 2.41
2992 4034 6.770303 TGTGGAAAGAATCATCAACAACTACA 59.230 34.615 0.00 0.00 0.00 2.74
2993 4035 7.202016 TGTGGAAAGAATCATCAACAACTAC 57.798 36.000 0.00 0.00 0.00 2.73
2994 4036 7.815840 TTGTGGAAAGAATCATCAACAACTA 57.184 32.000 5.31 0.00 0.00 2.24
2995 4037 6.713762 TTGTGGAAAGAATCATCAACAACT 57.286 33.333 5.31 0.00 0.00 3.16
2996 4038 6.980397 AGTTTGTGGAAAGAATCATCAACAAC 59.020 34.615 8.06 5.34 0.00 3.32
2997 4039 7.111247 AGTTTGTGGAAAGAATCATCAACAA 57.889 32.000 5.31 5.31 0.00 2.83
2998 4040 6.713762 AGTTTGTGGAAAGAATCATCAACA 57.286 33.333 0.00 0.00 0.00 3.33
2999 4041 6.421801 CCAAGTTTGTGGAAAGAATCATCAAC 59.578 38.462 0.00 0.00 41.65 3.18
3000 4042 6.098124 ACCAAGTTTGTGGAAAGAATCATCAA 59.902 34.615 0.00 0.00 41.65 2.57
3001 4043 5.598005 ACCAAGTTTGTGGAAAGAATCATCA 59.402 36.000 0.00 0.00 41.65 3.07
3002 4044 6.089249 ACCAAGTTTGTGGAAAGAATCATC 57.911 37.500 0.00 0.00 41.65 2.92
3003 4045 5.598005 TGACCAAGTTTGTGGAAAGAATCAT 59.402 36.000 0.00 0.00 41.65 2.45
3004 4046 4.952957 TGACCAAGTTTGTGGAAAGAATCA 59.047 37.500 0.00 0.00 41.65 2.57
3005 4047 5.514274 TGACCAAGTTTGTGGAAAGAATC 57.486 39.130 0.00 0.00 41.65 2.52
3006 4048 5.930837 TTGACCAAGTTTGTGGAAAGAAT 57.069 34.783 0.00 0.00 41.65 2.40
3007 4049 5.245075 AGTTTGACCAAGTTTGTGGAAAGAA 59.755 36.000 0.00 0.00 41.65 2.52
3008 4050 4.770010 AGTTTGACCAAGTTTGTGGAAAGA 59.230 37.500 0.00 0.00 41.65 2.52
3009 4051 5.072040 AGTTTGACCAAGTTTGTGGAAAG 57.928 39.130 0.00 0.00 41.65 2.62
3010 4052 6.783708 ATAGTTTGACCAAGTTTGTGGAAA 57.216 33.333 0.00 0.00 41.65 3.13
3011 4053 6.378564 TGAATAGTTTGACCAAGTTTGTGGAA 59.621 34.615 0.00 0.00 41.65 3.53
3012 4054 5.888724 TGAATAGTTTGACCAAGTTTGTGGA 59.111 36.000 0.00 0.00 41.65 4.02
3013 4055 6.142818 TGAATAGTTTGACCAAGTTTGTGG 57.857 37.500 0.00 0.00 44.92 4.17
3014 4056 7.424803 TGATGAATAGTTTGACCAAGTTTGTG 58.575 34.615 0.00 0.00 0.00 3.33
3015 4057 7.581213 TGATGAATAGTTTGACCAAGTTTGT 57.419 32.000 0.00 0.00 0.00 2.83
3016 4058 9.480053 AAATGATGAATAGTTTGACCAAGTTTG 57.520 29.630 0.00 0.00 0.00 2.93
3017 4059 9.480053 CAAATGATGAATAGTTTGACCAAGTTT 57.520 29.630 0.00 0.00 34.38 2.66
3018 4060 8.859090 TCAAATGATGAATAGTTTGACCAAGTT 58.141 29.630 0.00 0.00 36.11 2.66
3019 4061 8.408043 TCAAATGATGAATAGTTTGACCAAGT 57.592 30.769 0.00 0.00 36.11 3.16
3025 4067 7.064609 GTCCGAGTCAAATGATGAATAGTTTGA 59.935 37.037 0.00 0.00 40.50 2.69
3026 4068 7.148423 TGTCCGAGTCAAATGATGAATAGTTTG 60.148 37.037 0.00 0.00 40.50 2.93
3027 4069 6.878923 TGTCCGAGTCAAATGATGAATAGTTT 59.121 34.615 0.00 0.00 40.50 2.66
3028 4070 6.406370 TGTCCGAGTCAAATGATGAATAGTT 58.594 36.000 0.00 0.00 40.50 2.24
3029 4071 5.977635 TGTCCGAGTCAAATGATGAATAGT 58.022 37.500 0.00 0.00 40.50 2.12
3030 4072 6.908870 TTGTCCGAGTCAAATGATGAATAG 57.091 37.500 0.00 0.00 40.50 1.73
3031 4073 7.680442 TTTTGTCCGAGTCAAATGATGAATA 57.320 32.000 0.00 0.00 40.50 1.75
3032 4074 6.573664 TTTTGTCCGAGTCAAATGATGAAT 57.426 33.333 0.00 0.00 40.50 2.57
3033 4075 6.384258 TTTTTGTCCGAGTCAAATGATGAA 57.616 33.333 0.00 0.00 40.50 2.57
3034 4076 6.573664 ATTTTTGTCCGAGTCAAATGATGA 57.426 33.333 0.00 0.00 35.25 2.92
3035 4077 6.308766 GGAATTTTTGTCCGAGTCAAATGATG 59.691 38.462 0.00 0.00 35.25 3.07
3036 4078 6.015519 TGGAATTTTTGTCCGAGTCAAATGAT 60.016 34.615 0.00 0.00 38.06 2.45
3037 4079 5.300539 TGGAATTTTTGTCCGAGTCAAATGA 59.699 36.000 0.00 0.00 38.06 2.57
3038 4080 5.527951 TGGAATTTTTGTCCGAGTCAAATG 58.472 37.500 0.00 0.00 38.06 2.32
3039 4081 5.782893 TGGAATTTTTGTCCGAGTCAAAT 57.217 34.783 0.00 0.00 38.06 2.32
3040 4082 5.584253 TTGGAATTTTTGTCCGAGTCAAA 57.416 34.783 0.00 0.00 38.06 2.69
3041 4083 5.344884 GTTTGGAATTTTTGTCCGAGTCAA 58.655 37.500 0.00 0.00 38.06 3.18
3042 4084 4.202070 GGTTTGGAATTTTTGTCCGAGTCA 60.202 41.667 0.00 0.00 38.06 3.41
3043 4085 4.295870 GGTTTGGAATTTTTGTCCGAGTC 58.704 43.478 0.00 0.00 38.06 3.36
3044 4086 3.069016 GGGTTTGGAATTTTTGTCCGAGT 59.931 43.478 0.00 0.00 38.06 4.18
3045 4087 3.320826 AGGGTTTGGAATTTTTGTCCGAG 59.679 43.478 0.00 0.00 38.06 4.63
3046 4088 3.301274 AGGGTTTGGAATTTTTGTCCGA 58.699 40.909 0.00 0.00 38.06 4.55
3047 4089 3.320826 AGAGGGTTTGGAATTTTTGTCCG 59.679 43.478 0.00 0.00 38.06 4.79
3048 4090 4.955811 AGAGGGTTTGGAATTTTTGTCC 57.044 40.909 0.00 0.00 35.55 4.02
3049 4091 6.821160 TGAAAAGAGGGTTTGGAATTTTTGTC 59.179 34.615 0.00 0.00 0.00 3.18
3050 4092 6.716284 TGAAAAGAGGGTTTGGAATTTTTGT 58.284 32.000 0.00 0.00 0.00 2.83
3051 4093 7.047271 TCTGAAAAGAGGGTTTGGAATTTTTG 58.953 34.615 0.00 0.00 0.00 2.44
3052 4094 7.125659 TCTCTGAAAAGAGGGTTTGGAATTTTT 59.874 33.333 3.06 0.00 36.62 1.94
3053 4095 6.611236 TCTCTGAAAAGAGGGTTTGGAATTTT 59.389 34.615 3.06 0.00 36.62 1.82
3054 4096 6.040955 GTCTCTGAAAAGAGGGTTTGGAATTT 59.959 38.462 3.06 0.00 36.62 1.82
3055 4097 5.536538 GTCTCTGAAAAGAGGGTTTGGAATT 59.463 40.000 3.06 0.00 36.62 2.17
3056 4098 5.073428 GTCTCTGAAAAGAGGGTTTGGAAT 58.927 41.667 3.06 0.00 36.62 3.01
3057 4099 4.461198 GTCTCTGAAAAGAGGGTTTGGAA 58.539 43.478 3.06 0.00 36.62 3.53
3058 4100 3.181443 GGTCTCTGAAAAGAGGGTTTGGA 60.181 47.826 3.06 0.00 36.62 3.53
3059 4101 3.149981 GGTCTCTGAAAAGAGGGTTTGG 58.850 50.000 3.06 0.00 36.62 3.28
3060 4102 2.808543 CGGTCTCTGAAAAGAGGGTTTG 59.191 50.000 3.06 0.00 36.62 2.93
3061 4103 2.704065 TCGGTCTCTGAAAAGAGGGTTT 59.296 45.455 3.06 0.00 36.62 3.27
3062 4104 2.300437 CTCGGTCTCTGAAAAGAGGGTT 59.700 50.000 3.06 0.00 36.62 4.11
3063 4105 1.896465 CTCGGTCTCTGAAAAGAGGGT 59.104 52.381 3.06 0.00 36.62 4.34
3064 4106 1.205893 CCTCGGTCTCTGAAAAGAGGG 59.794 57.143 3.06 0.00 40.98 4.30
3065 4107 1.205893 CCCTCGGTCTCTGAAAAGAGG 59.794 57.143 3.06 2.55 43.46 3.69
3066 4108 2.165437 CTCCCTCGGTCTCTGAAAAGAG 59.835 54.545 0.00 0.00 37.28 2.85
3067 4109 2.171840 CTCCCTCGGTCTCTGAAAAGA 58.828 52.381 0.00 0.00 0.00 2.52
3068 4110 1.896465 ACTCCCTCGGTCTCTGAAAAG 59.104 52.381 0.00 0.00 0.00 2.27
3069 4111 2.011122 ACTCCCTCGGTCTCTGAAAA 57.989 50.000 0.00 0.00 0.00 2.29
3070 4112 2.224942 TGTACTCCCTCGGTCTCTGAAA 60.225 50.000 0.00 0.00 0.00 2.69
3071 4113 1.353358 TGTACTCCCTCGGTCTCTGAA 59.647 52.381 0.00 0.00 0.00 3.02
3072 4114 0.989602 TGTACTCCCTCGGTCTCTGA 59.010 55.000 0.00 0.00 0.00 3.27
3073 4115 1.473278 GTTGTACTCCCTCGGTCTCTG 59.527 57.143 0.00 0.00 0.00 3.35
3074 4116 1.616456 GGTTGTACTCCCTCGGTCTCT 60.616 57.143 0.00 0.00 0.00 3.10
3075 4117 0.816373 GGTTGTACTCCCTCGGTCTC 59.184 60.000 0.00 0.00 0.00 3.36
3076 4118 0.113776 TGGTTGTACTCCCTCGGTCT 59.886 55.000 0.00 0.00 0.00 3.85
3077 4119 0.971386 TTGGTTGTACTCCCTCGGTC 59.029 55.000 0.00 0.00 0.00 4.79
3078 4120 0.683412 GTTGGTTGTACTCCCTCGGT 59.317 55.000 0.00 0.00 0.00 4.69
3079 4121 0.389426 CGTTGGTTGTACTCCCTCGG 60.389 60.000 0.00 0.00 0.00 4.63
3080 4122 0.316204 ACGTTGGTTGTACTCCCTCG 59.684 55.000 0.00 7.11 0.00 4.63
3081 4123 2.669391 CGTACGTTGGTTGTACTCCCTC 60.669 54.545 7.22 0.00 39.98 4.30
3082 4124 1.270550 CGTACGTTGGTTGTACTCCCT 59.729 52.381 7.22 0.00 39.98 4.20
3083 4125 1.701704 CGTACGTTGGTTGTACTCCC 58.298 55.000 7.22 0.00 39.98 4.30
3084 4126 1.063031 GCGTACGTTGGTTGTACTCC 58.937 55.000 17.90 0.00 39.98 3.85
3085 4127 1.769733 TGCGTACGTTGGTTGTACTC 58.230 50.000 17.90 0.00 39.98 2.59
3086 4128 2.129607 CTTGCGTACGTTGGTTGTACT 58.870 47.619 17.90 0.00 39.98 2.73
3087 4129 2.126467 TCTTGCGTACGTTGGTTGTAC 58.874 47.619 17.90 0.00 39.01 2.90
3088 4130 2.505628 TCTTGCGTACGTTGGTTGTA 57.494 45.000 17.90 0.00 0.00 2.41
3089 4131 1.654317 TTCTTGCGTACGTTGGTTGT 58.346 45.000 17.90 0.00 0.00 3.32
3090 4132 2.223066 TGTTTCTTGCGTACGTTGGTTG 60.223 45.455 17.90 2.19 0.00 3.77
3091 4133 2.008329 TGTTTCTTGCGTACGTTGGTT 58.992 42.857 17.90 0.00 0.00 3.67
3092 4134 1.654317 TGTTTCTTGCGTACGTTGGT 58.346 45.000 17.90 0.00 0.00 3.67
3093 4135 2.223066 TGTTGTTTCTTGCGTACGTTGG 60.223 45.455 17.90 7.11 0.00 3.77
3094 4136 2.774074 GTGTTGTTTCTTGCGTACGTTG 59.226 45.455 17.90 7.49 0.00 4.10
3095 4137 2.415857 TGTGTTGTTTCTTGCGTACGTT 59.584 40.909 17.90 0.00 0.00 3.99
3096 4138 2.001159 TGTGTTGTTTCTTGCGTACGT 58.999 42.857 17.90 0.00 0.00 3.57
3097 4139 2.722936 TGTGTTGTTTCTTGCGTACG 57.277 45.000 11.84 11.84 0.00 3.67
3098 4140 5.404366 TCTCTATGTGTTGTTTCTTGCGTAC 59.596 40.000 0.00 0.00 0.00 3.67
3099 4141 5.534407 TCTCTATGTGTTGTTTCTTGCGTA 58.466 37.500 0.00 0.00 0.00 4.42
3100 4142 4.377021 TCTCTATGTGTTGTTTCTTGCGT 58.623 39.130 0.00 0.00 0.00 5.24
3101 4143 4.667668 GCTCTCTATGTGTTGTTTCTTGCG 60.668 45.833 0.00 0.00 0.00 4.85
3102 4144 4.214119 TGCTCTCTATGTGTTGTTTCTTGC 59.786 41.667 0.00 0.00 0.00 4.01
3103 4145 5.929697 TGCTCTCTATGTGTTGTTTCTTG 57.070 39.130 0.00 0.00 0.00 3.02
3104 4146 7.516198 AATTGCTCTCTATGTGTTGTTTCTT 57.484 32.000 0.00 0.00 0.00 2.52
3105 4147 7.516198 AAATTGCTCTCTATGTGTTGTTTCT 57.484 32.000 0.00 0.00 0.00 2.52
3106 4148 6.521133 CGAAATTGCTCTCTATGTGTTGTTTC 59.479 38.462 0.00 0.00 0.00 2.78
3107 4149 6.204688 TCGAAATTGCTCTCTATGTGTTGTTT 59.795 34.615 0.00 0.00 0.00 2.83
3108 4150 5.700832 TCGAAATTGCTCTCTATGTGTTGTT 59.299 36.000 0.00 0.00 0.00 2.83
3109 4151 5.237815 TCGAAATTGCTCTCTATGTGTTGT 58.762 37.500 0.00 0.00 0.00 3.32
3110 4152 5.784750 TCGAAATTGCTCTCTATGTGTTG 57.215 39.130 0.00 0.00 0.00 3.33
3111 4153 7.928167 TGATATCGAAATTGCTCTCTATGTGTT 59.072 33.333 0.00 0.00 0.00 3.32
3112 4154 7.383572 GTGATATCGAAATTGCTCTCTATGTGT 59.616 37.037 0.00 0.00 0.00 3.72
3113 4155 7.148672 GGTGATATCGAAATTGCTCTCTATGTG 60.149 40.741 0.00 0.00 0.00 3.21
3114 4156 6.870965 GGTGATATCGAAATTGCTCTCTATGT 59.129 38.462 0.00 0.00 0.00 2.29
3115 4157 7.095910 AGGTGATATCGAAATTGCTCTCTATG 58.904 38.462 0.00 0.00 0.00 2.23
3116 4158 7.238486 AGGTGATATCGAAATTGCTCTCTAT 57.762 36.000 0.00 0.00 0.00 1.98
3117 4159 6.568653 CGAGGTGATATCGAAATTGCTCTCTA 60.569 42.308 0.00 0.00 42.76 2.43
3118 4160 5.537188 GAGGTGATATCGAAATTGCTCTCT 58.463 41.667 0.00 0.00 0.00 3.10
3119 4161 4.384247 CGAGGTGATATCGAAATTGCTCTC 59.616 45.833 0.00 0.00 42.76 3.20
3120 4162 4.202161 ACGAGGTGATATCGAAATTGCTCT 60.202 41.667 1.94 0.00 42.76 4.09
3121 4163 4.051922 ACGAGGTGATATCGAAATTGCTC 58.948 43.478 1.94 0.00 42.76 4.26
3122 4164 4.060038 ACGAGGTGATATCGAAATTGCT 57.940 40.909 1.94 0.00 42.76 3.91
3123 4165 4.795970 AACGAGGTGATATCGAAATTGC 57.204 40.909 1.94 0.00 42.76 3.56
3131 4173 5.175859 TCAACTTCCAAACGAGGTGATATC 58.824 41.667 0.00 0.00 34.82 1.63
3132 4174 5.160607 TCAACTTCCAAACGAGGTGATAT 57.839 39.130 0.00 0.00 34.82 1.63
3133 4175 4.610605 TCAACTTCCAAACGAGGTGATA 57.389 40.909 0.00 0.00 34.82 2.15
3277 4320 1.999346 CTCCGAATTGGGGAAGGGT 59.001 57.895 6.66 0.00 43.10 4.34
3344 4387 1.035385 CGAAGGGGGTATGTTTGGGC 61.035 60.000 0.00 0.00 0.00 5.36
3345 4388 1.035385 GCGAAGGGGGTATGTTTGGG 61.035 60.000 0.00 0.00 0.00 4.12
3362 4405 4.752879 TTTTCCTCGAGCGGGGCG 62.753 66.667 6.99 0.00 35.22 6.13
3363 4406 2.798148 TTCTTTTCCTCGAGCGGGGC 62.798 60.000 6.99 0.00 35.22 5.80
3444 4519 2.243810 CGGGGATAGAGAAGAAGGAGG 58.756 57.143 0.00 0.00 0.00 4.30
3445 4520 2.243810 CCGGGGATAGAGAAGAAGGAG 58.756 57.143 0.00 0.00 0.00 3.69
3446 4521 1.758123 GCCGGGGATAGAGAAGAAGGA 60.758 57.143 2.18 0.00 0.00 3.36
3450 4525 0.537600 CTCGCCGGGGATAGAGAAGA 60.538 60.000 22.85 0.00 32.84 2.87
3565 4644 1.595382 GCACACAAGAGACAGCCGT 60.595 57.895 0.00 0.00 0.00 5.68
3603 4682 3.017581 CTGGTTGGGAGGGGAGGG 61.018 72.222 0.00 0.00 0.00 4.30
3632 4712 0.112412 AACAAGGGGCGTTCCAGATT 59.888 50.000 0.00 0.00 37.22 2.40
3647 4727 2.646175 CCGAGGGGAGAGCGAACAA 61.646 63.158 0.00 0.00 34.06 2.83
3653 4734 3.151022 CTGGTCCGAGGGGAGAGC 61.151 72.222 0.00 0.00 44.97 4.09
3728 4824 4.586841 GCTACTGAGAAGGATCCATACACT 59.413 45.833 15.82 5.25 0.00 3.55
3762 4859 2.257353 GCAGCACTTTGAATCGGGT 58.743 52.632 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.