AutoCloner

Multiple sequence alignment - TraesCS7B01G317600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G317600	chr7B	100.000	1867	0	0	494	2360	567637590	567635724	0.000000e+00	3448.0
1	TraesCS7B01G317600	chr7B	94.844	834	25	10	1526	2354	567883728	567884548	0.000000e+00	1286.0
2	TraesCS7B01G317600	chr7B	93.069	505	30	4	494	995	585848194	585847692	0.000000e+00	734.0
3	TraesCS7B01G317600	chr7B	93.981	432	15	6	997	1417	567882820	567883251	0.000000e+00	643.0
4	TraesCS7B01G317600	chr7B	100.000	124	0	0	1	124	567638083	567637960	1.820000e-56	230.0
5	TraesCS7B01G317600	chr7B	95.122	123	5	1	1	123	585848365	585848244	2.390000e-45	193.0
6	TraesCS7B01G317600	chr7D	93.567	886	37	10	1480	2360	529773049	529773919	0.000000e+00	1303.0
7	TraesCS7B01G317600	chr7D	91.163	894	34	11	1472	2360	529681613	529680760	0.000000e+00	1171.0
8	TraesCS7B01G317600	chr7D	97.022	403	12	0	997	1399	529682049	529681647	0.000000e+00	678.0
9	TraesCS7B01G317600	chr7D	97.260	365	10	0	997	1361	529772590	529772954	9.270000e-174	619.0
10	TraesCS7B01G317600	chr7A	94.723	739	39	0	1620	2358	609338908	609339646	0.000000e+00	1149.0
11	TraesCS7B01G317600	chr7A	96.253	427	13	1	997	1420	609335861	609336287	0.000000e+00	697.0
12	TraesCS7B01G317600	chr7A	95.343	408	19	0	1952	2359	609134305	609133898	0.000000e+00	649.0
13	TraesCS7B01G317600	chr7A	97.275	367	10	0	997	1363	609172616	609172250	7.160000e-175	623.0
14	TraesCS7B01G317600	chr7A	95.192	208	10	0	1716	1923	609134511	609134304	1.750000e-86	329.0
15	TraesCS7B01G317600	chr7A	89.000	100	11	0	1619	1718	609141013	609140914	8.860000e-25	124.0
16	TraesCS7B01G317600	chr4A	98.406	502	6	2	494	995	447542260	447542759	0.000000e+00	881.0
17	TraesCS7B01G317600	chr4A	97.041	507	11	4	494	998	665717370	665716866	0.000000e+00	850.0
18	TraesCS7B01G317600	chr4A	100.000	124	0	0	1	124	665717531	665717408	1.820000e-56	230.0
19	TraesCS7B01G317600	chr4A	99.194	124	1	0	1	124	447542109	447542232	8.490000e-55	224.0
20	TraesCS7B01G317600	chr6A	93.069	505	30	4	494	995	70164696	70164194	0.000000e+00	734.0
21	TraesCS7B01G317600	chr6A	92.673	505	32	4	494	995	560590232	560590734	0.000000e+00	723.0
22	TraesCS7B01G317600	chr6A	95.122	123	5	1	1	123	70164867	70164746	2.390000e-45	193.0
23	TraesCS7B01G317600	chr6A	95.122	123	5	1	1	123	560590061	560590182	2.390000e-45	193.0
24	TraesCS7B01G317600	chr6B	92.475	505	32	5	495	996	696417814	696418315	0.000000e+00	717.0
25	TraesCS7B01G317600	chr6B	94.309	123	6	1	1	123	696417642	696417763	1.110000e-43	187.0
26	TraesCS7B01G317600	chr6B	84.571	175	16	7	830	995	619399121	619398949	1.880000e-36	163.0
27	TraesCS7B01G317600	chr2B	91.829	514	34	7	494	1003	777904132	777903623	0.000000e+00	710.0
28	TraesCS7B01G317600	chr2B	94.309	123	6	1	1	123	777904303	777904182	1.110000e-43	187.0
29	TraesCS7B01G317600	chr2D	85.517	145	13	6	859	995	114426311	114426455	6.800000e-31	145.0
30	TraesCS7B01G317600	chr3A	71.825	504	112	22	515	995	59820167	59820663	1.480000e-22	117.0
31	TraesCS7B01G317600	chr4B	83.495	103	17	0	1223	1325	654751736	654751634	1.930000e-16	97.1
32	TraesCS7B01G317600	chr4B	82.524	103	18	0	1223	1325	654761975	654761873	8.980000e-15	91.6
33	TraesCS7B01G317600	chr4B	82.524	103	18	0	1223	1325	654774181	654774079	8.980000e-15	91.6
34	TraesCS7B01G317600	chr4B	81.553	103	19	0	1223	1325	654699241	654699139	4.180000e-13	86.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G317600	chr7B	567635724	567638083	2359	True	1839.0	3448	100.0000	1	2360	2	chr7B.!!$R1	2359
1	TraesCS7B01G317600	chr7B	567882820	567884548	1728	False	964.5	1286	94.4125	997	2354	2	chr7B.!!$F1	1357
2	TraesCS7B01G317600	chr7B	585847692	585848365	673	True	463.5	734	94.0955	1	995	2	chr7B.!!$R2	994
3	TraesCS7B01G317600	chr7D	529772590	529773919	1329	False	961.0	1303	95.4135	997	2360	2	chr7D.!!$F1	1363
4	TraesCS7B01G317600	chr7D	529680760	529682049	1289	True	924.5	1171	94.0925	997	2360	2	chr7D.!!$R1	1363
5	TraesCS7B01G317600	chr7A	609335861	609339646	3785	False	923.0	1149	95.4880	997	2358	2	chr7A.!!$F1	1361
6	TraesCS7B01G317600	chr7A	609133898	609134511	613	True	489.0	649	95.2675	1716	2359	2	chr7A.!!$R3	643
7	TraesCS7B01G317600	chr4A	447542109	447542759	650	False	552.5	881	98.8000	1	995	2	chr4A.!!$F1	994
8	TraesCS7B01G317600	chr4A	665716866	665717531	665	True	540.0	850	98.5205	1	998	2	chr4A.!!$R1	997
9	TraesCS7B01G317600	chr6A	70164194	70164867	673	True	463.5	734	94.0955	1	995	2	chr6A.!!$R1	994
10	TraesCS7B01G317600	chr6A	560590061	560590734	673	False	458.0	723	93.8975	1	995	2	chr6A.!!$F1	994
11	TraesCS7B01G317600	chr6B	696417642	696418315	673	False	452.0	717	93.3920	1	996	2	chr6B.!!$F1	995
12	TraesCS7B01G317600	chr2B	777903623	777904303	680	True	448.5	710	93.0690	1	1003	2	chr2B.!!$R1	1002

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
795	796	7.919091	TCGGATAAGATTGACATGTACAACTAC	59.081	37.037	0.0	1.95	0.0	2.73	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1598	2934	0.534877	TGAACGTGCATGCTTCCAGT	60.535	50.0	20.33	8.59	0.0	4.0	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
795	796	7.919091	TCGGATAAGATTGACATGTACAACTAC	59.081	37.037	0.00	1.95	0.00	2.73
944	950	8.896722	ACCACTATATTGTCTATACTAAGGGG	57.103	38.462	0.00	0.00	31.04	4.79
1170	1176	1.218047	GCTGATCCACGTGGTGCTA	59.782	57.895	32.74	15.46	36.34	3.49
1325	1331	0.389037	CTGCTGCTCAACTACTGCGA	60.389	55.000	0.00	0.00	33.87	5.10
1420	1473	1.264020	GTACGTGTCAGGTCGTGTGTA	59.736	52.381	0.50	0.00	40.50	2.90
1421	1474	0.029834	ACGTGTCAGGTCGTGTGTAC	59.970	55.000	0.00	0.00	38.85	2.90
1422	1475	0.662374	CGTGTCAGGTCGTGTGTACC	60.662	60.000	0.00	0.00	37.27	3.34
1425	1478	0.662374	GTCAGGTCGTGTGTACCGTG	60.662	60.000	0.00	0.00	42.15	4.94
1427	1480	0.937699	CAGGTCGTGTGTACCGTGTG	60.938	60.000	0.00	0.00	42.15	3.82
1429	1482	0.528249	GGTCGTGTGTACCGTGTGTT	60.528	55.000	0.00	0.00	0.00	3.32
1430	1483	1.280066	GTCGTGTGTACCGTGTGTTT	58.720	50.000	0.00	0.00	0.00	2.83
1431	1484	1.005766	GTCGTGTGTACCGTGTGTTTG	60.006	52.381	0.00	0.00	0.00	2.93
1432	1485	0.302288	CGTGTGTACCGTGTGTTTGG	59.698	55.000	0.00	0.00	0.00	3.28
1433	1486	1.371595	GTGTGTACCGTGTGTTTGGT	58.628	50.000	0.00	0.00	42.34	3.67
1435	1488	1.738350	TGTGTACCGTGTGTTTGGTTG	59.262	47.619	0.00	0.00	39.70	3.77
1437	1490	2.008329	TGTACCGTGTGTTTGGTTGTC	58.992	47.619	0.00	0.00	39.70	3.18
1440	1493	0.247894	CCGTGTGTTTGGTTGTCGTG	60.248	55.000	0.00	0.00	0.00	4.35
1441	1494	0.444651	CGTGTGTTTGGTTGTCGTGT	59.555	50.000	0.00	0.00	0.00	4.49
1443	1496	0.169230	TGTGTTTGGTTGTCGTGTGC	59.831	50.000	0.00	0.00	0.00	4.57
1444	1497	0.450184	GTGTTTGGTTGTCGTGTGCT	59.550	50.000	0.00	0.00	0.00	4.40
1445	1498	0.730265	TGTTTGGTTGTCGTGTGCTC	59.270	50.000	0.00	0.00	0.00	4.26
1446	1499	0.028902	GTTTGGTTGTCGTGTGCTCC	59.971	55.000	0.00	0.00	0.00	4.70
1448	1501	0.753867	TTGGTTGTCGTGTGCTCCTA	59.246	50.000	0.00	0.00	0.00	2.94
1450	1503	0.669625	GGTTGTCGTGTGCTCCTACC	60.670	60.000	0.00	0.00	0.00	3.18
1451	1504	0.317479	GTTGTCGTGTGCTCCTACCT	59.683	55.000	0.00	0.00	0.00	3.08
1452	1505	1.542915	GTTGTCGTGTGCTCCTACCTA	59.457	52.381	0.00	0.00	0.00	3.08
1453	1506	1.460504	TGTCGTGTGCTCCTACCTAG	58.539	55.000	0.00	0.00	0.00	3.02
1455	1508	2.026915	TGTCGTGTGCTCCTACCTAGTA	60.027	50.000	0.00	0.00	0.00	1.82
1456	1509	2.354199	GTCGTGTGCTCCTACCTAGTAC	59.646	54.545	0.00	0.00	0.00	2.73
1457	1510	1.329906	CGTGTGCTCCTACCTAGTACG	59.670	57.143	0.00	0.00	32.84	3.67
1458	1511	2.363683	GTGTGCTCCTACCTAGTACGT	58.636	52.381	0.00	0.00	32.84	3.57
1460	1513	3.311048	GTGTGCTCCTACCTAGTACGTAC	59.689	52.174	18.10	18.10	32.84	3.67
1461	1514	2.875317	GTGCTCCTACCTAGTACGTACC	59.125	54.545	21.80	4.66	0.00	3.34
1462	1515	2.505407	TGCTCCTACCTAGTACGTACCA	59.495	50.000	21.80	7.96	0.00	3.25
1463	1516	2.875317	GCTCCTACCTAGTACGTACCAC	59.125	54.545	21.80	0.00	0.00	4.16
1466	1519	4.708177	TCCTACCTAGTACGTACCACATC	58.292	47.826	21.80	0.00	0.00	3.06
1467	1520	4.164030	TCCTACCTAGTACGTACCACATCA	59.836	45.833	21.80	3.07	0.00	3.07
1468	1521	4.514441	CCTACCTAGTACGTACCACATCAG	59.486	50.000	21.80	11.84	0.00	2.90
1469	1522	3.960571	ACCTAGTACGTACCACATCAGT	58.039	45.455	21.80	7.56	0.00	3.41
1471	1524	5.688807	ACCTAGTACGTACCACATCAGTAT	58.311	41.667	21.80	2.21	0.00	2.12
1472	1525	5.762218	ACCTAGTACGTACCACATCAGTATC	59.238	44.000	21.80	0.00	0.00	2.24
1473	1526	5.761726	CCTAGTACGTACCACATCAGTATCA	59.238	44.000	21.80	0.00	0.00	2.15
1474	1527	5.752892	AGTACGTACCACATCAGTATCAG	57.247	43.478	21.80	0.00	0.00	2.90
1475	1528	4.579340	AGTACGTACCACATCAGTATCAGG	59.421	45.833	21.80	0.00	0.00	3.86
1477	1530	3.380637	ACGTACCACATCAGTATCAGGTC	59.619	47.826	0.00	0.00	0.00	3.85
1478	1531	3.548214	CGTACCACATCAGTATCAGGTCG	60.548	52.174	0.00	0.00	0.00	4.79
1479	1532	2.457598	ACCACATCAGTATCAGGTCGT	58.542	47.619	0.00	0.00	0.00	4.34
1480	1533	2.166459	ACCACATCAGTATCAGGTCGTG	59.834	50.000	0.00	0.00	0.00	4.35
1481	1534	2.166459	CCACATCAGTATCAGGTCGTGT	59.834	50.000	0.00	0.00	0.00	4.49
1523	1971	5.499493	GCGTTGTGTTAAAAGCGACATTTTT	60.499	36.000	0.00	0.00	34.35	1.94
1526	1974	7.462200	CGTTGTGTTAAAAGCGACATTTTTCTT	60.462	33.333	0.00	0.00	34.35	2.52
1527	1975	7.820044	TGTGTTAAAAGCGACATTTTTCTTT	57.180	28.000	0.00	0.00	34.35	2.52
1528	1976	8.245701	TGTGTTAAAAGCGACATTTTTCTTTT	57.754	26.923	0.00	0.00	40.53	2.27
1529	1977	8.713271	TGTGTTAAAAGCGACATTTTTCTTTTT	58.287	25.926	4.47	0.00	38.94	1.94
1530	1978	9.194716	GTGTTAAAAGCGACATTTTTCTTTTTC	57.805	29.630	4.47	1.26	38.94	2.29
1531	1979	9.145865	TGTTAAAAGCGACATTTTTCTTTTTCT	57.854	25.926	4.47	0.00	38.94	2.52
1532	1980	9.619727	GTTAAAAGCGACATTTTTCTTTTTCTC	57.380	29.630	4.47	0.00	38.94	2.87
1533	1981	6.828502	AAAGCGACATTTTTCTTTTTCTCC	57.171	33.333	0.00	0.00	0.00	3.71
1534	1982	5.514274	AGCGACATTTTTCTTTTTCTCCA	57.486	34.783	0.00	0.00	0.00	3.86
1535	1983	5.901552	AGCGACATTTTTCTTTTTCTCCAA	58.098	33.333	0.00	0.00	0.00	3.53
1536	1984	6.515832	AGCGACATTTTTCTTTTTCTCCAAT	58.484	32.000	0.00	0.00	0.00	3.16
1550	1998	8.865590	TTTTTCTCCAATAAAAAGCACTGTAC	57.134	30.769	0.00	0.00	32.40	2.90
1553	2001	7.202016	TCTCCAATAAAAAGCACTGTACTTG	57.798	36.000	0.00	0.00	0.00	3.16
1555	2003	7.934665	TCTCCAATAAAAAGCACTGTACTTGTA	59.065	33.333	0.00	0.00	0.00	2.41
1556	2004	7.867752	TCCAATAAAAAGCACTGTACTTGTAC	58.132	34.615	4.14	4.14	0.00	2.90
1590	2926	2.729360	TCACGTGTTTATTCGCAGTCTG	59.271	45.455	16.51	0.00	0.00	3.51
1591	2927	2.729360	CACGTGTTTATTCGCAGTCTGA	59.271	45.455	7.58	0.00	0.00	3.27
1592	2928	3.367932	CACGTGTTTATTCGCAGTCTGAT	59.632	43.478	7.58	0.00	0.00	2.90
1593	2929	3.612860	ACGTGTTTATTCGCAGTCTGATC	59.387	43.478	3.32	0.00	0.00	2.92
1594	2930	3.859961	CGTGTTTATTCGCAGTCTGATCT	59.140	43.478	3.32	0.00	0.00	2.75
1595	2931	4.259570	CGTGTTTATTCGCAGTCTGATCTG	60.260	45.833	3.32	0.00	38.35	2.90
1596	2932	4.033358	GTGTTTATTCGCAGTCTGATCTGG	59.967	45.833	3.32	0.00	36.12	3.86
1597	2933	4.081697	TGTTTATTCGCAGTCTGATCTGGA	60.082	41.667	3.32	0.00	36.12	3.86
1598	2934	4.736126	TTATTCGCAGTCTGATCTGGAA	57.264	40.909	3.32	0.00	36.12	3.53
1599	2935	2.370281	TTCGCAGTCTGATCTGGAAC	57.630	50.000	3.32	0.00	36.12	3.62
1600	2936	1.550327	TCGCAGTCTGATCTGGAACT	58.450	50.000	3.32	0.00	36.12	3.01
1601	2937	1.203287	TCGCAGTCTGATCTGGAACTG	59.797	52.381	3.32	13.80	36.12	3.16
1602	2938	1.738365	CGCAGTCTGATCTGGAACTGG	60.738	57.143	17.55	8.46	36.12	4.00

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
735	736	3.578688	GATGCATCTTGTTGTCAAACCC	58.421	45.455	19.70	0.00	35.25	4.11
973	979	0.544697	GGGCCGGTCCTGAGATTTTA	59.455	55.000	20.78	0.00	34.39	1.52
1395	1445	1.068748	ACGACCTGACACGTACATGAC	60.069	52.381	0.00	0.00	40.92	3.06
1396	1446	1.068816	CACGACCTGACACGTACATGA	60.069	52.381	0.00	0.00	40.76	3.07
1420	1473	0.674269	ACGACAACCAAACACACGGT	60.674	50.000	0.00	0.00	36.98	4.83
1421	1474	0.247894	CACGACAACCAAACACACGG	60.248	55.000	0.00	0.00	0.00	4.94
1422	1475	0.444651	ACACGACAACCAAACACACG	59.555	50.000	0.00	0.00	0.00	4.49
1425	1478	0.450184	AGCACACGACAACCAAACAC	59.550	50.000	0.00	0.00	0.00	3.32
1427	1480	0.028902	GGAGCACACGACAACCAAAC	59.971	55.000	0.00	0.00	0.00	2.93
1429	1482	0.753867	TAGGAGCACACGACAACCAA	59.246	50.000	0.00	0.00	0.00	3.67
1430	1483	0.032952	GTAGGAGCACACGACAACCA	59.967	55.000	0.00	0.00	0.00	3.67
1431	1484	0.669625	GGTAGGAGCACACGACAACC	60.670	60.000	0.00	0.00	0.00	3.77
1432	1485	0.317479	AGGTAGGAGCACACGACAAC	59.683	55.000	0.00	0.00	0.00	3.32
1433	1486	1.816835	CTAGGTAGGAGCACACGACAA	59.183	52.381	0.00	0.00	0.00	3.18
1435	1488	1.461559	ACTAGGTAGGAGCACACGAC	58.538	55.000	0.00	0.00	0.00	4.34
1437	1490	1.329906	CGTACTAGGTAGGAGCACACG	59.670	57.143	0.00	0.00	0.00	4.49
1440	1493	2.875317	GGTACGTACTAGGTAGGAGCAC	59.125	54.545	24.07	0.14	0.00	4.40
1441	1494	2.505407	TGGTACGTACTAGGTAGGAGCA	59.495	50.000	24.07	7.66	0.00	4.26
1443	1496	4.142609	TGTGGTACGTACTAGGTAGGAG	57.857	50.000	24.07	0.00	0.00	3.69
1444	1497	4.164030	TGATGTGGTACGTACTAGGTAGGA	59.836	45.833	24.07	0.00	0.00	2.94
1445	1498	4.454678	TGATGTGGTACGTACTAGGTAGG	58.545	47.826	24.07	0.00	0.00	3.18
1446	1499	5.121811	ACTGATGTGGTACGTACTAGGTAG	58.878	45.833	24.07	16.76	0.00	3.18
1448	1501	3.960571	ACTGATGTGGTACGTACTAGGT	58.039	45.455	24.07	10.37	0.00	3.08
1450	1503	6.073167	CCTGATACTGATGTGGTACGTACTAG	60.073	46.154	24.07	14.56	0.00	2.57
1451	1504	5.761726	CCTGATACTGATGTGGTACGTACTA	59.238	44.000	24.07	16.71	0.00	1.82
1452	1505	4.579340	CCTGATACTGATGTGGTACGTACT	59.421	45.833	24.07	5.26	0.00	2.73
1453	1506	4.337555	ACCTGATACTGATGTGGTACGTAC	59.662	45.833	17.56	17.56	0.00	3.67
1455	1508	3.362706	ACCTGATACTGATGTGGTACGT	58.637	45.455	0.00	0.00	0.00	3.57
1456	1509	3.548214	CGACCTGATACTGATGTGGTACG	60.548	52.174	0.00	0.00	0.00	3.67
1457	1510	3.380637	ACGACCTGATACTGATGTGGTAC	59.619	47.826	0.00	0.00	0.00	3.34
1458	1511	3.380320	CACGACCTGATACTGATGTGGTA	59.620	47.826	0.00	0.00	0.00	3.25
1460	1513	2.166459	ACACGACCTGATACTGATGTGG	59.834	50.000	0.00	0.00	0.00	4.17
1461	1514	3.119495	TCACACGACCTGATACTGATGTG	60.119	47.826	0.00	0.00	38.01	3.21
1462	1515	3.089284	TCACACGACCTGATACTGATGT	58.911	45.455	0.00	0.00	0.00	3.06
1463	1516	3.782889	TCACACGACCTGATACTGATG	57.217	47.619	0.00	0.00	0.00	3.07
1466	1519	3.865745	GGAATTCACACGACCTGATACTG	59.134	47.826	7.93	0.00	0.00	2.74
1467	1520	3.118738	GGGAATTCACACGACCTGATACT	60.119	47.826	7.93	0.00	0.00	2.12
1468	1521	3.195661	GGGAATTCACACGACCTGATAC	58.804	50.000	7.93	0.00	0.00	2.24
1469	1522	2.835156	TGGGAATTCACACGACCTGATA	59.165	45.455	6.21	0.00	0.00	2.15
1471	1524	1.001974	CTGGGAATTCACACGACCTGA	59.998	52.381	6.21	0.00	0.00	3.86
1472	1525	1.442769	CTGGGAATTCACACGACCTG	58.557	55.000	6.21	0.00	0.00	4.00
1473	1526	0.321653	GCTGGGAATTCACACGACCT	60.322	55.000	6.21	0.00	0.00	3.85
1474	1527	0.321653	AGCTGGGAATTCACACGACC	60.322	55.000	6.21	0.00	0.00	4.79
1475	1528	1.197721	CAAGCTGGGAATTCACACGAC	59.802	52.381	6.21	0.00	0.00	4.34
1477	1530	1.069022	CACAAGCTGGGAATTCACACG	60.069	52.381	6.21	4.59	0.00	4.49
1478	1531	1.956477	ACACAAGCTGGGAATTCACAC	59.044	47.619	6.21	4.27	0.00	3.82
1479	1532	1.955778	CACACAAGCTGGGAATTCACA	59.044	47.619	10.61	10.61	0.00	3.58
1480	1533	1.336240	GCACACAAGCTGGGAATTCAC	60.336	52.381	7.93	3.78	0.00	3.18
1481	1534	0.961019	GCACACAAGCTGGGAATTCA	59.039	50.000	7.93	0.00	0.00	2.57
1526	1974	8.232913	AGTACAGTGCTTTTTATTGGAGAAAA	57.767	30.769	0.00	0.00	0.00	2.29
1527	1975	7.817418	AGTACAGTGCTTTTTATTGGAGAAA	57.183	32.000	0.00	0.00	0.00	2.52
1528	1976	7.284489	ACAAGTACAGTGCTTTTTATTGGAGAA	59.716	33.333	0.31	0.00	0.00	2.87
1529	1977	6.770785	ACAAGTACAGTGCTTTTTATTGGAGA	59.229	34.615	0.31	0.00	0.00	3.71
1530	1978	6.970484	ACAAGTACAGTGCTTTTTATTGGAG	58.030	36.000	0.31	0.00	0.00	3.86
1531	1979	6.952773	ACAAGTACAGTGCTTTTTATTGGA	57.047	33.333	0.31	0.00	0.00	3.53
1532	1980	7.871853	AGTACAAGTACAGTGCTTTTTATTGG	58.128	34.615	12.43	0.00	38.48	3.16
1535	1983	9.720769	ACATAGTACAAGTACAGTGCTTTTTAT	57.279	29.630	12.72	0.86	38.48	1.40
1536	1984	9.550406	AACATAGTACAAGTACAGTGCTTTTTA	57.450	29.630	12.72	0.00	38.48	1.52
1550	1998	6.034577	CACGTGACCATACAACATAGTACAAG	59.965	42.308	10.90	0.00	0.00	3.16
1553	2001	5.404946	ACACGTGACCATACAACATAGTAC	58.595	41.667	25.01	0.00	0.00	2.73
1555	2003	4.530710	ACACGTGACCATACAACATAGT	57.469	40.909	25.01	0.00	0.00	2.12
1556	2004	5.856126	AAACACGTGACCATACAACATAG	57.144	39.130	25.01	0.00	0.00	2.23
1590	2926	1.674962	GCATGCTTCCAGTTCCAGATC	59.325	52.381	11.37	0.00	0.00	2.75
1591	2927	1.005097	TGCATGCTTCCAGTTCCAGAT	59.995	47.619	20.33	0.00	0.00	2.90
1592	2928	0.401356	TGCATGCTTCCAGTTCCAGA	59.599	50.000	20.33	0.00	0.00	3.86
1593	2929	0.524862	GTGCATGCTTCCAGTTCCAG	59.475	55.000	20.33	0.00	0.00	3.86
1594	2930	1.236616	CGTGCATGCTTCCAGTTCCA	61.237	55.000	20.33	0.00	0.00	3.53
1595	2931	1.237285	ACGTGCATGCTTCCAGTTCC	61.237	55.000	20.33	0.00	0.00	3.62
1596	2932	0.593128	AACGTGCATGCTTCCAGTTC	59.407	50.000	20.33	0.00	0.00	3.01
1597	2933	0.593128	GAACGTGCATGCTTCCAGTT	59.407	50.000	20.33	16.12	0.00	3.16
1598	2934	0.534877	TGAACGTGCATGCTTCCAGT	60.535	50.000	20.33	8.59	0.00	4.00
1599	2935	0.592637	TTGAACGTGCATGCTTCCAG	59.407	50.000	20.33	7.95	0.00	3.86
1600	2936	1.246649	ATTGAACGTGCATGCTTCCA	58.753	45.000	20.33	6.82	0.00	3.53
1601	2937	2.352503	AATTGAACGTGCATGCTTCC	57.647	45.000	20.33	5.89	0.00	3.46
1602	2938	5.207768	CCTATAATTGAACGTGCATGCTTC	58.792	41.667	20.33	14.69	0.00	3.86
2174	5077	3.442167	TACGCGGCGTGGAAGCTA	61.442	61.111	35.53	13.11	41.39	3.32
2321	5224	4.954118	ACGGTGCCCAGGGAGACA	62.954	66.667	10.89	0.00	0.00	3.41

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.