Multiple sequence alignment - TraesCS7B01G316400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G316400 chr7B 100.000 2753 0 0 1 2753 565789502 565786750 0.000000e+00 5084
1 TraesCS7B01G316400 chr7B 98.141 1775 30 1 82 1856 565744340 565742569 0.000000e+00 3092
2 TraesCS7B01G316400 chr7B 98.126 747 14 0 2007 2753 565742570 565741824 0.000000e+00 1303
3 TraesCS7B01G316400 chr7B 84.574 188 24 5 172 356 5340666 5340481 6.060000e-42 182
4 TraesCS7B01G316400 chr7B 98.000 100 2 0 1912 2011 380869631 380869730 1.010000e-39 174
5 TraesCS7B01G316400 chr7B 96.341 82 3 0 1 82 565765289 565765208 4.780000e-28 135
6 TraesCS7B01G316400 chr7B 93.056 72 3 2 1844 1915 271250774 271250843 1.350000e-18 104
7 TraesCS7B01G316400 chr4D 92.785 887 32 8 981 1856 133609540 133610405 0.000000e+00 1254
8 TraesCS7B01G316400 chr4D 91.817 721 38 9 2007 2707 133610404 133611123 0.000000e+00 985
9 TraesCS7B01G316400 chr4D 93.310 284 19 0 699 982 133609223 133609506 1.180000e-113 420
10 TraesCS7B01G316400 chr4D 81.892 370 54 13 194 557 12500917 12500555 1.600000e-77 300
11 TraesCS7B01G316400 chr4A 90.337 890 39 15 981 1856 427883950 427883094 0.000000e+00 1123
12 TraesCS7B01G316400 chr4A 92.515 334 23 2 2007 2339 427883095 427882763 6.900000e-131 477
13 TraesCS7B01G316400 chr4A 91.193 352 17 5 638 982 427884328 427883984 1.490000e-127 466
14 TraesCS7B01G316400 chr4A 96.970 99 3 0 1912 2010 617362949 617363047 1.700000e-37 167
15 TraesCS7B01G316400 chr4A 96.970 66 2 0 1850 1915 741808102 741808167 8.060000e-21 111
16 TraesCS7B01G316400 chr6B 79.433 423 58 22 172 584 706467489 706467086 3.490000e-69 272
17 TraesCS7B01G316400 chr6B 98.000 100 2 0 1912 2011 156651536 156651437 1.010000e-39 174
18 TraesCS7B01G316400 chr6B 98.000 100 2 0 1912 2011 679979066 679978967 1.010000e-39 174
19 TraesCS7B01G316400 chr6B 97.059 102 3 0 1912 2013 143439814 143439915 3.640000e-39 172
20 TraesCS7B01G316400 chr3B 78.974 390 57 21 172 556 828910819 828911188 2.740000e-60 243
21 TraesCS7B01G316400 chr5D 78.630 365 56 15 226 584 271459922 271460270 3.570000e-54 222
22 TraesCS7B01G316400 chr5D 88.125 160 14 4 1854 2008 390354600 390354441 4.680000e-43 185
23 TraesCS7B01G316400 chr7D 83.262 233 36 3 193 424 52239902 52239672 7.720000e-51 211
24 TraesCS7B01G316400 chr7D 98.990 99 1 0 1912 2010 545096012 545095914 7.830000e-41 178
25 TraesCS7B01G316400 chr7D 83.544 158 12 3 1854 2011 586892471 586892614 4.780000e-28 135
26 TraesCS7B01G316400 chr7D 84.496 129 17 2 1886 2011 391575997 391575869 1.040000e-24 124
27 TraesCS7B01G316400 chr1A 78.310 355 50 22 172 520 9471432 9471765 1.290000e-48 204
28 TraesCS7B01G316400 chr1A 84.574 188 24 4 172 356 567458313 567458128 6.060000e-42 182
29 TraesCS7B01G316400 chr1A 76.053 380 60 27 180 555 582744966 582745318 4.720000e-38 169
30 TraesCS7B01G316400 chr1A 90.000 80 3 4 1837 1915 397969204 397969129 6.270000e-17 99
31 TraesCS7B01G316400 chr3A 86.022 186 25 1 172 356 726322859 726322674 6.010000e-47 198
32 TraesCS7B01G316400 chr3A 82.677 127 19 3 1891 2016 147557825 147557949 2.900000e-20 110
33 TraesCS7B01G316400 chr2B 76.667 420 61 28 192 583 428925208 428925618 6.010000e-47 198
34 TraesCS7B01G316400 chr2B 98.980 98 1 0 1912 2009 691451336 691451433 2.820000e-40 176
35 TraesCS7B01G316400 chr3D 94.444 108 6 0 1912 2019 442525170 442525277 1.700000e-37 167
36 TraesCS7B01G316400 chr1D 83.648 159 25 1 190 347 434617249 434617407 6.140000e-32 148
37 TraesCS7B01G316400 chr5B 81.818 154 24 3 1862 2011 392086259 392086412 2.880000e-25 126
38 TraesCS7B01G316400 chr5B 81.818 154 24 3 1862 2011 392126296 392126449 2.880000e-25 126
39 TraesCS7B01G316400 chr4B 95.522 67 3 0 1854 1920 21930564 21930498 1.040000e-19 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G316400 chr7B 565786750 565789502 2752 True 5084.000000 5084 100.000000 1 2753 1 chr7B.!!$R3 2752
1 TraesCS7B01G316400 chr7B 565741824 565744340 2516 True 2197.500000 3092 98.133500 82 2753 2 chr7B.!!$R4 2671
2 TraesCS7B01G316400 chr4D 133609223 133611123 1900 False 886.333333 1254 92.637333 699 2707 3 chr4D.!!$F1 2008
3 TraesCS7B01G316400 chr4A 427882763 427884328 1565 True 688.666667 1123 91.348333 638 2339 3 chr4A.!!$R1 1701

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
48 49 0.03213 TTCTTCGTGCGACTCTGCTT 59.968 50.0 0.0 0.0 35.36 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1990 2089 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.0 14.79 0.04 33.41 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.989249 CTTCATCATTGTTCTTCGTGTTCA 58.011 37.500 0.00 0.00 0.00 3.18
24 25 6.370433 TTCATCATTGTTCTTCGTGTTCAA 57.630 33.333 0.00 0.00 0.00 2.69
25 26 5.989249 TCATCATTGTTCTTCGTGTTCAAG 58.011 37.500 0.00 0.00 0.00 3.02
26 27 5.527214 TCATCATTGTTCTTCGTGTTCAAGT 59.473 36.000 0.00 0.00 0.00 3.16
27 28 5.155509 TCATTGTTCTTCGTGTTCAAGTG 57.844 39.130 0.00 0.00 0.00 3.16
28 29 3.398954 TTGTTCTTCGTGTTCAAGTGC 57.601 42.857 0.00 0.00 0.00 4.40
29 30 2.627945 TGTTCTTCGTGTTCAAGTGCT 58.372 42.857 0.00 0.00 0.00 4.40
30 31 3.006940 TGTTCTTCGTGTTCAAGTGCTT 58.993 40.909 0.00 0.00 0.00 3.91
31 32 3.063452 TGTTCTTCGTGTTCAAGTGCTTC 59.937 43.478 0.00 0.00 0.00 3.86
32 33 3.179443 TCTTCGTGTTCAAGTGCTTCT 57.821 42.857 0.00 0.00 0.00 2.85
33 34 3.531538 TCTTCGTGTTCAAGTGCTTCTT 58.468 40.909 0.00 0.00 36.75 2.52
34 35 3.555956 TCTTCGTGTTCAAGTGCTTCTTC 59.444 43.478 0.00 0.00 33.63 2.87
35 36 1.858458 TCGTGTTCAAGTGCTTCTTCG 59.142 47.619 0.00 0.00 33.63 3.79
36 37 1.593006 CGTGTTCAAGTGCTTCTTCGT 59.407 47.619 0.00 0.00 33.63 3.85
37 38 2.597505 CGTGTTCAAGTGCTTCTTCGTG 60.598 50.000 0.00 0.00 33.63 4.35
38 39 1.330521 TGTTCAAGTGCTTCTTCGTGC 59.669 47.619 0.00 0.00 33.63 5.34
39 40 0.581529 TTCAAGTGCTTCTTCGTGCG 59.418 50.000 0.00 0.00 33.63 5.34
40 41 0.249280 TCAAGTGCTTCTTCGTGCGA 60.249 50.000 0.00 0.00 33.63 5.10
41 42 0.111089 CAAGTGCTTCTTCGTGCGAC 60.111 55.000 0.00 0.00 33.63 5.19
42 43 0.249489 AAGTGCTTCTTCGTGCGACT 60.249 50.000 0.00 0.00 0.00 4.18
43 44 0.664767 AGTGCTTCTTCGTGCGACTC 60.665 55.000 0.00 0.00 0.00 3.36
44 45 0.664767 GTGCTTCTTCGTGCGACTCT 60.665 55.000 0.00 0.00 0.00 3.24
45 46 0.664466 TGCTTCTTCGTGCGACTCTG 60.664 55.000 0.00 0.00 0.00 3.35
46 47 1.950098 GCTTCTTCGTGCGACTCTGC 61.950 60.000 0.00 0.00 0.00 4.26
47 48 0.387878 CTTCTTCGTGCGACTCTGCT 60.388 55.000 0.00 0.00 35.36 4.24
48 49 0.032130 TTCTTCGTGCGACTCTGCTT 59.968 50.000 0.00 0.00 35.36 3.91
49 50 0.664466 TCTTCGTGCGACTCTGCTTG 60.664 55.000 0.00 0.00 35.36 4.01
50 51 1.621301 CTTCGTGCGACTCTGCTTGG 61.621 60.000 0.00 0.00 35.36 3.61
51 52 3.782244 CGTGCGACTCTGCTTGGC 61.782 66.667 0.00 0.00 35.36 4.52
52 53 2.666190 GTGCGACTCTGCTTGGCA 60.666 61.111 0.00 0.00 36.92 4.92
66 67 2.187946 GGCAGTGCCTATGCGACT 59.812 61.111 27.48 0.00 46.69 4.18
67 68 1.441729 GGCAGTGCCTATGCGACTA 59.558 57.895 27.48 0.00 46.69 2.59
68 69 0.876342 GGCAGTGCCTATGCGACTAC 60.876 60.000 27.48 0.00 46.69 2.73
69 70 1.209275 GCAGTGCCTATGCGACTACG 61.209 60.000 2.85 0.00 41.78 3.51
79 80 4.379221 CGACTACGCTAGTGGCAC 57.621 61.111 10.29 10.29 39.59 5.01
80 81 1.504900 CGACTACGCTAGTGGCACA 59.495 57.895 21.41 5.00 39.59 4.57
97 98 2.590291 ACATGCGTTGTGGCGTCA 60.590 55.556 0.00 0.00 37.11 4.35
109 110 3.607987 GCGTCATCTCGGTTCGCG 61.608 66.667 0.00 0.00 37.74 5.87
129 130 1.000843 GTGACCTTTCAATTGTGCCCC 59.999 52.381 5.13 0.00 31.90 5.80
141 142 1.057275 TGTGCCCCAGGACACAAGTA 61.057 55.000 11.73 0.00 43.48 2.24
165 166 2.741985 CGGCATTGTGCGGTCTCA 60.742 61.111 1.84 0.00 46.21 3.27
176 177 1.074319 GCGGTCTCAAACACGCGATA 61.074 55.000 15.93 0.00 37.65 2.92
216 217 4.088762 CACATGTGCCGTGGCGTC 62.089 66.667 13.94 2.79 45.51 5.19
252 253 0.893270 CCTTTCGATTGCACCCCACA 60.893 55.000 0.00 0.00 0.00 4.17
253 254 0.523072 CTTTCGATTGCACCCCACAG 59.477 55.000 0.00 0.00 0.00 3.66
434 435 4.138290 CCCCTGTTATGTGTGTTGTTGTA 58.862 43.478 0.00 0.00 0.00 2.41
442 443 4.608073 TGTGTGTTGTTGTATGTGTCAC 57.392 40.909 0.00 0.00 0.00 3.67
474 475 8.814448 TTATTTCTTCTCCTTACATATCCCCT 57.186 34.615 0.00 0.00 0.00 4.79
505 506 8.755696 TTTCGGTTCATTTGAATCTATTTTGG 57.244 30.769 2.36 0.00 36.33 3.28
802 803 4.402155 TGTCCAAATGTCAATAATGGAGGC 59.598 41.667 0.00 0.00 40.65 4.70
845 857 2.364324 TGAACGGTAGGAGCATATGGTC 59.636 50.000 23.74 23.74 41.50 4.02
1418 1503 2.368875 GGGTCAGACTCCTCAACAAAGA 59.631 50.000 0.00 0.00 0.00 2.52
1856 1955 4.801891 CACAATGTTTCTGCAACTGCTAT 58.198 39.130 2.95 0.00 42.66 2.97
1857 1956 5.224888 CACAATGTTTCTGCAACTGCTATT 58.775 37.500 2.95 0.00 42.66 1.73
1858 1957 5.344128 CACAATGTTTCTGCAACTGCTATTC 59.656 40.000 2.95 0.00 42.66 1.75
1859 1958 4.708726 ATGTTTCTGCAACTGCTATTCC 57.291 40.909 2.95 0.00 42.66 3.01
1860 1959 2.819608 TGTTTCTGCAACTGCTATTCCC 59.180 45.455 2.95 0.00 42.66 3.97
1861 1960 3.084786 GTTTCTGCAACTGCTATTCCCT 58.915 45.455 2.95 0.00 42.66 4.20
1862 1961 2.698855 TCTGCAACTGCTATTCCCTC 57.301 50.000 2.95 0.00 42.66 4.30
1863 1962 1.210478 TCTGCAACTGCTATTCCCTCC 59.790 52.381 2.95 0.00 42.66 4.30
1864 1963 0.107703 TGCAACTGCTATTCCCTCCG 60.108 55.000 2.95 0.00 42.66 4.63
1865 1964 0.107654 GCAACTGCTATTCCCTCCGT 60.108 55.000 0.00 0.00 38.21 4.69
1866 1965 1.679032 GCAACTGCTATTCCCTCCGTT 60.679 52.381 0.00 0.00 38.21 4.44
1867 1966 2.280628 CAACTGCTATTCCCTCCGTTC 58.719 52.381 0.00 0.00 0.00 3.95
1868 1967 0.460311 ACTGCTATTCCCTCCGTTCG 59.540 55.000 0.00 0.00 0.00 3.95
1869 1968 0.744874 CTGCTATTCCCTCCGTTCGA 59.255 55.000 0.00 0.00 0.00 3.71
1870 1969 1.136305 CTGCTATTCCCTCCGTTCGAA 59.864 52.381 0.00 0.00 0.00 3.71
1871 1970 1.551430 TGCTATTCCCTCCGTTCGAAA 59.449 47.619 0.00 0.00 0.00 3.46
1872 1971 2.169769 TGCTATTCCCTCCGTTCGAAAT 59.830 45.455 0.00 0.00 0.00 2.17
1873 1972 3.203716 GCTATTCCCTCCGTTCGAAATT 58.796 45.455 0.00 0.00 0.00 1.82
1874 1973 4.141892 TGCTATTCCCTCCGTTCGAAATTA 60.142 41.667 0.00 0.00 0.00 1.40
1875 1974 4.210746 GCTATTCCCTCCGTTCGAAATTAC 59.789 45.833 0.00 0.00 0.00 1.89
1876 1975 3.967332 TTCCCTCCGTTCGAAATTACT 57.033 42.857 0.00 0.00 0.00 2.24
1877 1976 3.967332 TCCCTCCGTTCGAAATTACTT 57.033 42.857 0.00 0.00 0.00 2.24
1878 1977 3.592059 TCCCTCCGTTCGAAATTACTTG 58.408 45.455 0.00 0.00 0.00 3.16
1879 1978 3.007182 TCCCTCCGTTCGAAATTACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
1880 1979 3.370061 CCCTCCGTTCGAAATTACTTGTC 59.630 47.826 0.00 0.00 0.00 3.18
1881 1980 3.060363 CCTCCGTTCGAAATTACTTGTCG 59.940 47.826 0.00 0.00 36.12 4.35
1882 1981 2.409378 TCCGTTCGAAATTACTTGTCGC 59.591 45.455 0.00 0.00 34.80 5.19
1883 1982 2.405736 CGTTCGAAATTACTTGTCGCG 58.594 47.619 0.00 0.00 34.80 5.87
1884 1983 2.089427 CGTTCGAAATTACTTGTCGCGA 59.911 45.455 3.71 3.71 34.80 5.87
1885 1984 3.420799 CGTTCGAAATTACTTGTCGCGAA 60.421 43.478 12.06 0.00 34.80 4.70
1886 1985 4.448005 GTTCGAAATTACTTGTCGCGAAA 58.552 39.130 12.06 0.54 37.90 3.46
1887 1986 4.712191 TCGAAATTACTTGTCGCGAAAA 57.288 36.364 12.06 12.01 34.80 2.29
1888 1987 5.272167 TCGAAATTACTTGTCGCGAAAAT 57.728 34.783 13.05 5.74 34.80 1.82
1889 1988 5.076765 TCGAAATTACTTGTCGCGAAAATG 58.923 37.500 13.05 9.32 34.80 2.32
1890 1989 4.259734 CGAAATTACTTGTCGCGAAAATGG 59.740 41.667 13.05 4.35 0.00 3.16
1891 1990 5.365403 AAATTACTTGTCGCGAAAATGGA 57.635 34.783 13.05 0.56 0.00 3.41
1892 1991 5.560966 AATTACTTGTCGCGAAAATGGAT 57.439 34.783 13.05 3.91 0.00 3.41
1893 1992 2.900122 ACTTGTCGCGAAAATGGATG 57.100 45.000 13.05 2.76 0.00 3.51
1894 1993 2.151202 ACTTGTCGCGAAAATGGATGT 58.849 42.857 13.05 3.46 0.00 3.06
1895 1994 3.331150 ACTTGTCGCGAAAATGGATGTA 58.669 40.909 13.05 0.00 0.00 2.29
1896 1995 3.938963 ACTTGTCGCGAAAATGGATGTAT 59.061 39.130 13.05 0.00 0.00 2.29
1897 1996 4.034048 ACTTGTCGCGAAAATGGATGTATC 59.966 41.667 13.05 0.00 0.00 2.24
1898 1997 3.792401 TGTCGCGAAAATGGATGTATCT 58.208 40.909 12.06 0.00 0.00 1.98
1899 1998 4.939271 TGTCGCGAAAATGGATGTATCTA 58.061 39.130 12.06 0.00 0.00 1.98
1900 1999 4.982295 TGTCGCGAAAATGGATGTATCTAG 59.018 41.667 12.06 0.00 0.00 2.43
1901 2000 5.220381 GTCGCGAAAATGGATGTATCTAGA 58.780 41.667 12.06 0.00 0.00 2.43
1902 2001 5.117287 GTCGCGAAAATGGATGTATCTAGAC 59.883 44.000 12.06 0.00 0.00 2.59
1903 2002 4.088638 CGCGAAAATGGATGTATCTAGACG 59.911 45.833 0.00 0.00 0.00 4.18
1904 2003 4.982916 GCGAAAATGGATGTATCTAGACGT 59.017 41.667 0.00 0.00 0.00 4.34
1905 2004 6.147581 GCGAAAATGGATGTATCTAGACGTA 58.852 40.000 0.00 0.00 0.00 3.57
1906 2005 6.807230 GCGAAAATGGATGTATCTAGACGTAT 59.193 38.462 0.00 0.00 0.00 3.06
1907 2006 7.328737 GCGAAAATGGATGTATCTAGACGTATT 59.671 37.037 0.00 0.00 0.00 1.89
1908 2007 9.193133 CGAAAATGGATGTATCTAGACGTATTT 57.807 33.333 0.00 0.00 0.00 1.40
1915 2014 9.327529 GGATGTATCTAGACGTATTTTAGTTCG 57.672 37.037 0.00 0.00 0.00 3.95
1928 2027 9.180312 CGTATTTTAGTTCGAAATTACTTGTCG 57.820 33.333 2.37 0.00 36.12 4.35
1929 2028 8.982649 GTATTTTAGTTCGAAATTACTTGTCGC 58.017 33.333 2.37 0.00 34.80 5.19
1930 2029 3.700130 AGTTCGAAATTACTTGTCGCG 57.300 42.857 0.00 0.00 34.80 5.87
1931 2030 3.311106 AGTTCGAAATTACTTGTCGCGA 58.689 40.909 3.71 3.71 34.80 5.87
1932 2031 3.737266 AGTTCGAAATTACTTGTCGCGAA 59.263 39.130 12.06 0.00 34.80 4.70
1933 2032 4.209703 AGTTCGAAATTACTTGTCGCGAAA 59.790 37.500 12.06 0.54 37.90 3.46
1934 2033 4.712191 TCGAAATTACTTGTCGCGAAAA 57.288 36.364 12.06 12.01 34.80 2.29
1935 2034 5.272167 TCGAAATTACTTGTCGCGAAAAT 57.728 34.783 13.05 5.74 34.80 1.82
1936 2035 5.076765 TCGAAATTACTTGTCGCGAAAATG 58.923 37.500 13.05 9.32 34.80 2.32
1937 2036 4.259734 CGAAATTACTTGTCGCGAAAATGG 59.740 41.667 13.05 4.35 0.00 3.16
1938 2037 5.365403 AAATTACTTGTCGCGAAAATGGA 57.635 34.783 13.05 0.56 0.00 3.41
1939 2038 5.560966 AATTACTTGTCGCGAAAATGGAT 57.439 34.783 13.05 3.91 0.00 3.41
1940 2039 2.900122 ACTTGTCGCGAAAATGGATG 57.100 45.000 13.05 2.76 0.00 3.51
1941 2040 2.151202 ACTTGTCGCGAAAATGGATGT 58.849 42.857 13.05 3.46 0.00 3.06
1942 2041 3.331150 ACTTGTCGCGAAAATGGATGTA 58.669 40.909 13.05 0.00 0.00 2.29
1943 2042 3.938963 ACTTGTCGCGAAAATGGATGTAT 59.061 39.130 13.05 0.00 0.00 2.29
1944 2043 4.034048 ACTTGTCGCGAAAATGGATGTATC 59.966 41.667 13.05 0.00 0.00 2.24
1945 2044 3.792401 TGTCGCGAAAATGGATGTATCT 58.208 40.909 12.06 0.00 0.00 1.98
1946 2045 4.939271 TGTCGCGAAAATGGATGTATCTA 58.061 39.130 12.06 0.00 0.00 1.98
1947 2046 4.982295 TGTCGCGAAAATGGATGTATCTAG 59.018 41.667 12.06 0.00 0.00 2.43
1948 2047 5.220381 GTCGCGAAAATGGATGTATCTAGA 58.780 41.667 12.06 0.00 0.00 2.43
1949 2048 5.117287 GTCGCGAAAATGGATGTATCTAGAC 59.883 44.000 12.06 0.00 0.00 2.59
1950 2049 4.088638 CGCGAAAATGGATGTATCTAGACG 59.911 45.833 0.00 0.00 0.00 4.18
1951 2050 4.982916 GCGAAAATGGATGTATCTAGACGT 59.017 41.667 0.00 0.00 0.00 4.34
1952 2051 6.147581 GCGAAAATGGATGTATCTAGACGTA 58.852 40.000 0.00 0.00 0.00 3.57
1953 2052 6.807230 GCGAAAATGGATGTATCTAGACGTAT 59.193 38.462 0.00 0.00 0.00 3.06
1954 2053 7.328737 GCGAAAATGGATGTATCTAGACGTATT 59.671 37.037 0.00 0.00 0.00 1.89
1955 2054 9.193133 CGAAAATGGATGTATCTAGACGTATTT 57.807 33.333 0.00 0.00 0.00 1.40
1979 2078 9.542462 TTTTAGTTCTAGATACATCCATTTCCG 57.458 33.333 0.00 0.00 0.00 4.30
1980 2079 6.978674 AGTTCTAGATACATCCATTTCCGA 57.021 37.500 0.00 0.00 0.00 4.55
1981 2080 6.987386 AGTTCTAGATACATCCATTTCCGAG 58.013 40.000 0.00 0.00 0.00 4.63
1982 2081 6.778069 AGTTCTAGATACATCCATTTCCGAGA 59.222 38.462 0.00 0.00 0.00 4.04
1983 2082 6.576662 TCTAGATACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36
1984 2083 6.068670 TCTAGATACATCCATTTCCGAGACA 58.931 40.000 0.00 0.00 0.00 3.41
1985 2084 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
1986 2085 5.605534 AGATACATCCATTTCCGAGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
1987 2086 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
1988 2087 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
1989 2088 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
1990 2089 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
1991 2090 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
1992 2091 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
1993 2092 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
1994 2093 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
1995 2094 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
1996 2095 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
1997 2096 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
1998 2097 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
1999 2098 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
2000 2099 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
2001 2100 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
2002 2101 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
2003 2102 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
2004 2103 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
2005 2104 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
2006 2105 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
2007 2106 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
2364 2466 4.069304 TCGGTGTAAAGAAACTTCCATGG 58.931 43.478 4.97 4.97 0.00 3.66
2588 2707 2.949177 TTTTCACCAGCTTCAGCCTA 57.051 45.000 0.00 0.00 43.38 3.93
2708 2827 6.821031 ATTAGAAGAGCGAATATAGGACGT 57.179 37.500 0.00 0.00 0.00 4.34
2741 2860 6.096001 AGCAAAACTTGTCTCATTCAACTTCT 59.904 34.615 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.989249 TGAACACGAAGAACAATGATGAAG 58.011 37.500 0.00 0.00 0.00 3.02
1 2 6.038161 ACTTGAACACGAAGAACAATGATGAA 59.962 34.615 0.00 0.00 0.00 2.57
2 3 5.527214 ACTTGAACACGAAGAACAATGATGA 59.473 36.000 0.00 0.00 0.00 2.92
3 4 5.622448 CACTTGAACACGAAGAACAATGATG 59.378 40.000 0.00 0.00 0.00 3.07
4 5 5.751680 CACTTGAACACGAAGAACAATGAT 58.248 37.500 0.00 0.00 0.00 2.45
5 6 4.495679 GCACTTGAACACGAAGAACAATGA 60.496 41.667 0.00 0.00 0.00 2.57
6 7 3.725740 GCACTTGAACACGAAGAACAATG 59.274 43.478 0.00 0.00 0.00 2.82
7 8 3.627577 AGCACTTGAACACGAAGAACAAT 59.372 39.130 0.00 0.00 0.00 2.71
8 9 3.006940 AGCACTTGAACACGAAGAACAA 58.993 40.909 0.00 0.00 0.00 2.83
9 10 2.627945 AGCACTTGAACACGAAGAACA 58.372 42.857 0.00 0.00 0.00 3.18
10 11 3.309954 AGAAGCACTTGAACACGAAGAAC 59.690 43.478 0.00 0.00 0.00 3.01
11 12 3.531538 AGAAGCACTTGAACACGAAGAA 58.468 40.909 0.00 0.00 0.00 2.52
12 13 3.179443 AGAAGCACTTGAACACGAAGA 57.821 42.857 0.00 0.00 0.00 2.87
13 14 3.602491 CGAAGAAGCACTTGAACACGAAG 60.602 47.826 0.00 0.00 39.13 3.79
14 15 2.284150 CGAAGAAGCACTTGAACACGAA 59.716 45.455 0.00 0.00 39.13 3.85
15 16 1.858458 CGAAGAAGCACTTGAACACGA 59.142 47.619 0.00 0.00 39.13 4.35
16 17 1.593006 ACGAAGAAGCACTTGAACACG 59.407 47.619 0.00 0.00 39.13 4.49
17 18 2.851008 GCACGAAGAAGCACTTGAACAC 60.851 50.000 0.00 0.00 39.13 3.32
18 19 1.330521 GCACGAAGAAGCACTTGAACA 59.669 47.619 0.00 0.00 39.13 3.18
19 20 1.657538 CGCACGAAGAAGCACTTGAAC 60.658 52.381 0.00 0.00 39.13 3.18
20 21 0.581529 CGCACGAAGAAGCACTTGAA 59.418 50.000 0.00 0.00 39.13 2.69
21 22 0.249280 TCGCACGAAGAAGCACTTGA 60.249 50.000 0.00 0.00 39.13 3.02
22 23 0.111089 GTCGCACGAAGAAGCACTTG 60.111 55.000 0.00 0.00 39.13 3.16
23 24 0.249489 AGTCGCACGAAGAAGCACTT 60.249 50.000 0.00 0.00 42.03 3.16
24 25 0.664767 GAGTCGCACGAAGAAGCACT 60.665 55.000 0.00 0.00 33.01 4.40
25 26 0.664767 AGAGTCGCACGAAGAAGCAC 60.665 55.000 0.00 0.00 33.01 4.40
26 27 0.664466 CAGAGTCGCACGAAGAAGCA 60.664 55.000 0.00 0.00 33.01 3.91
27 28 1.950098 GCAGAGTCGCACGAAGAAGC 61.950 60.000 0.00 0.00 0.00 3.86
28 29 0.387878 AGCAGAGTCGCACGAAGAAG 60.388 55.000 9.14 0.00 0.00 2.85
29 30 0.032130 AAGCAGAGTCGCACGAAGAA 59.968 50.000 9.14 0.00 0.00 2.52
30 31 0.664466 CAAGCAGAGTCGCACGAAGA 60.664 55.000 9.14 0.00 0.00 2.87
31 32 1.621301 CCAAGCAGAGTCGCACGAAG 61.621 60.000 9.14 0.00 0.00 3.79
32 33 1.664649 CCAAGCAGAGTCGCACGAA 60.665 57.895 9.14 0.00 0.00 3.85
33 34 2.049156 CCAAGCAGAGTCGCACGA 60.049 61.111 9.14 0.00 0.00 4.35
34 35 3.782244 GCCAAGCAGAGTCGCACG 61.782 66.667 9.14 0.00 0.00 5.34
35 36 2.666190 TGCCAAGCAGAGTCGCAC 60.666 61.111 9.14 0.00 33.32 5.34
50 51 1.209275 CGTAGTCGCATAGGCACTGC 61.209 60.000 12.60 10.72 41.52 4.40
51 52 2.873367 CGTAGTCGCATAGGCACTG 58.127 57.895 12.60 0.00 41.52 3.66
80 81 1.911293 GATGACGCCACAACGCATGT 61.911 55.000 0.00 0.00 45.34 3.21
93 94 2.202440 ACGCGAACCGAGATGACG 60.202 61.111 15.93 0.00 41.02 4.35
96 97 2.158959 GGTCACGCGAACCGAGATG 61.159 63.158 15.93 0.00 38.73 2.90
97 98 1.874345 AAGGTCACGCGAACCGAGAT 61.874 55.000 23.01 12.35 41.89 2.75
109 110 1.000843 GGGGCACAATTGAAAGGTCAC 59.999 52.381 13.59 0.00 31.90 3.67
141 142 2.336088 GCACAATGCCGCAACACT 59.664 55.556 0.00 0.00 37.42 3.55
150 151 0.310543 TGTTTGAGACCGCACAATGC 59.689 50.000 0.00 0.00 40.69 3.56
165 166 1.802365 GTTGAAGGGTATCGCGTGTTT 59.198 47.619 5.77 0.00 0.00 2.83
176 177 2.113139 CCGGCACAGTTGAAGGGT 59.887 61.111 0.00 0.00 0.00 4.34
227 228 0.452784 GTGCAATCGAAAGGTCACGC 60.453 55.000 0.00 0.00 0.00 5.34
252 253 4.969196 CGTGACACCACCTGCGCT 62.969 66.667 9.73 0.00 40.12 5.92
319 320 1.949525 CAAGACCAAACCAGGACACTG 59.050 52.381 0.00 0.00 44.51 3.66
501 502 1.185315 GCTTTGCAGCCTATCCCAAA 58.815 50.000 0.00 0.00 40.61 3.28
522 523 9.017509 CCTGAATTGTATTCATGTTGCCTATAT 57.982 33.333 2.84 0.00 0.00 0.86
758 759 3.964031 CAGAGATAGCTTAAGGTGGGTCT 59.036 47.826 17.34 15.81 0.00 3.85
845 857 1.134818 TGACTAGCGTGGGCAATACAG 60.135 52.381 0.00 0.00 43.41 2.74
1418 1503 0.913451 AGGAGGTTGAGGAGCAGCAT 60.913 55.000 0.00 0.00 0.00 3.79
1856 1955 3.967332 AGTAATTTCGAACGGAGGGAA 57.033 42.857 0.00 0.00 0.00 3.97
1857 1956 3.007182 ACAAGTAATTTCGAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
1858 1957 3.332034 ACAAGTAATTTCGAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
1859 1958 3.060363 CGACAAGTAATTTCGAACGGAGG 59.940 47.826 0.00 0.00 34.62 4.30
1860 1959 3.481467 GCGACAAGTAATTTCGAACGGAG 60.481 47.826 0.00 0.00 34.62 4.63
1861 1960 2.409378 GCGACAAGTAATTTCGAACGGA 59.591 45.455 0.00 0.00 34.62 4.69
1862 1961 2.754478 GCGACAAGTAATTTCGAACGG 58.246 47.619 0.00 0.00 34.62 4.44
1863 1962 2.089427 TCGCGACAAGTAATTTCGAACG 59.911 45.455 3.71 0.00 34.62 3.95
1864 1963 3.693300 TCGCGACAAGTAATTTCGAAC 57.307 42.857 3.71 0.00 34.62 3.95
1865 1964 4.712191 TTTCGCGACAAGTAATTTCGAA 57.288 36.364 9.15 0.00 34.62 3.71
1866 1965 4.712191 TTTTCGCGACAAGTAATTTCGA 57.288 36.364 9.15 0.00 34.62 3.71
1867 1966 4.259734 CCATTTTCGCGACAAGTAATTTCG 59.740 41.667 9.15 4.05 35.82 3.46
1868 1967 5.387279 TCCATTTTCGCGACAAGTAATTTC 58.613 37.500 9.15 0.00 0.00 2.17
1869 1968 5.365403 TCCATTTTCGCGACAAGTAATTT 57.635 34.783 9.15 0.00 0.00 1.82
1870 1969 5.106317 ACATCCATTTTCGCGACAAGTAATT 60.106 36.000 9.15 0.00 0.00 1.40
1871 1970 4.394920 ACATCCATTTTCGCGACAAGTAAT 59.605 37.500 9.15 0.42 0.00 1.89
1872 1971 3.749088 ACATCCATTTTCGCGACAAGTAA 59.251 39.130 9.15 0.00 0.00 2.24
1873 1972 3.331150 ACATCCATTTTCGCGACAAGTA 58.669 40.909 9.15 0.00 0.00 2.24
1874 1973 2.151202 ACATCCATTTTCGCGACAAGT 58.849 42.857 9.15 0.00 0.00 3.16
1875 1974 2.900122 ACATCCATTTTCGCGACAAG 57.100 45.000 9.15 2.84 0.00 3.16
1876 1975 4.188462 AGATACATCCATTTTCGCGACAA 58.812 39.130 9.15 9.93 0.00 3.18
1877 1976 3.792401 AGATACATCCATTTTCGCGACA 58.208 40.909 9.15 0.00 0.00 4.35
1878 1977 5.117287 GTCTAGATACATCCATTTTCGCGAC 59.883 44.000 9.15 0.00 0.00 5.19
1879 1978 5.220381 GTCTAGATACATCCATTTTCGCGA 58.780 41.667 3.71 3.71 0.00 5.87
1880 1979 4.088638 CGTCTAGATACATCCATTTTCGCG 59.911 45.833 0.00 0.00 0.00 5.87
1881 1980 4.982916 ACGTCTAGATACATCCATTTTCGC 59.017 41.667 0.00 0.00 0.00 4.70
1882 1981 8.744008 AATACGTCTAGATACATCCATTTTCG 57.256 34.615 0.00 0.00 0.00 3.46
1889 1988 9.327529 CGAACTAAAATACGTCTAGATACATCC 57.672 37.037 0.00 0.00 0.00 3.51
1902 2001 9.180312 CGACAAGTAATTTCGAACTAAAATACG 57.820 33.333 0.00 0.00 32.43 3.06
1903 2002 8.982649 GCGACAAGTAATTTCGAACTAAAATAC 58.017 33.333 0.00 0.00 34.62 1.89
1904 2003 7.894247 CGCGACAAGTAATTTCGAACTAAAATA 59.106 33.333 0.00 0.00 34.62 1.40
1905 2004 6.735063 CGCGACAAGTAATTTCGAACTAAAAT 59.265 34.615 0.00 0.00 34.62 1.82
1906 2005 6.066410 CGCGACAAGTAATTTCGAACTAAAA 58.934 36.000 0.00 0.00 34.62 1.52
1907 2006 5.401972 TCGCGACAAGTAATTTCGAACTAAA 59.598 36.000 3.71 0.00 34.62 1.85
1908 2007 4.916831 TCGCGACAAGTAATTTCGAACTAA 59.083 37.500 3.71 0.00 34.62 2.24
1909 2008 4.475028 TCGCGACAAGTAATTTCGAACTA 58.525 39.130 3.71 0.00 34.62 2.24
1910 2009 3.311106 TCGCGACAAGTAATTTCGAACT 58.689 40.909 3.71 0.00 34.62 3.01
1911 2010 3.693300 TCGCGACAAGTAATTTCGAAC 57.307 42.857 3.71 0.00 34.62 3.95
1912 2011 4.712191 TTTCGCGACAAGTAATTTCGAA 57.288 36.364 9.15 0.00 34.62 3.71
1913 2012 4.712191 TTTTCGCGACAAGTAATTTCGA 57.288 36.364 9.15 0.00 34.62 3.71
1914 2013 4.259734 CCATTTTCGCGACAAGTAATTTCG 59.740 41.667 9.15 4.05 35.82 3.46
1915 2014 5.387279 TCCATTTTCGCGACAAGTAATTTC 58.613 37.500 9.15 0.00 0.00 2.17
1916 2015 5.365403 TCCATTTTCGCGACAAGTAATTT 57.635 34.783 9.15 0.00 0.00 1.82
1917 2016 5.106317 ACATCCATTTTCGCGACAAGTAATT 60.106 36.000 9.15 0.00 0.00 1.40
1918 2017 4.394920 ACATCCATTTTCGCGACAAGTAAT 59.605 37.500 9.15 0.42 0.00 1.89
1919 2018 3.749088 ACATCCATTTTCGCGACAAGTAA 59.251 39.130 9.15 0.00 0.00 2.24
1920 2019 3.331150 ACATCCATTTTCGCGACAAGTA 58.669 40.909 9.15 0.00 0.00 2.24
1921 2020 2.151202 ACATCCATTTTCGCGACAAGT 58.849 42.857 9.15 0.00 0.00 3.16
1922 2021 2.900122 ACATCCATTTTCGCGACAAG 57.100 45.000 9.15 2.84 0.00 3.16
1923 2022 4.188462 AGATACATCCATTTTCGCGACAA 58.812 39.130 9.15 9.93 0.00 3.18
1924 2023 3.792401 AGATACATCCATTTTCGCGACA 58.208 40.909 9.15 0.00 0.00 4.35
1925 2024 5.117287 GTCTAGATACATCCATTTTCGCGAC 59.883 44.000 9.15 0.00 0.00 5.19
1926 2025 5.220381 GTCTAGATACATCCATTTTCGCGA 58.780 41.667 3.71 3.71 0.00 5.87
1927 2026 4.088638 CGTCTAGATACATCCATTTTCGCG 59.911 45.833 0.00 0.00 0.00 5.87
1928 2027 4.982916 ACGTCTAGATACATCCATTTTCGC 59.017 41.667 0.00 0.00 0.00 4.70
1929 2028 8.744008 AATACGTCTAGATACATCCATTTTCG 57.256 34.615 0.00 0.00 0.00 3.46
1953 2052 9.542462 CGGAAATGGATGTATCTAGAACTAAAA 57.458 33.333 0.00 0.00 0.00 1.52
1954 2053 8.920174 TCGGAAATGGATGTATCTAGAACTAAA 58.080 33.333 0.00 0.00 0.00 1.85
1955 2054 8.473358 TCGGAAATGGATGTATCTAGAACTAA 57.527 34.615 0.00 0.00 0.00 2.24
1956 2055 7.942894 TCTCGGAAATGGATGTATCTAGAACTA 59.057 37.037 0.00 0.00 0.00 2.24
1957 2056 6.778069 TCTCGGAAATGGATGTATCTAGAACT 59.222 38.462 0.00 0.00 0.00 3.01
1958 2057 6.864165 GTCTCGGAAATGGATGTATCTAGAAC 59.136 42.308 0.00 0.00 0.00 3.01
1959 2058 6.549736 TGTCTCGGAAATGGATGTATCTAGAA 59.450 38.462 0.00 0.00 0.00 2.10
1960 2059 6.068670 TGTCTCGGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
1961 2060 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
1962 2061 6.323996 ACTTGTCTCGGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
1963 2062 5.129485 ACTTGTCTCGGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
1964 2063 5.360591 ACTTGTCTCGGAAATGGATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
1965 2064 5.359194 ACTTGTCTCGGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
1966 2065 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
1967 2066 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
1968 2067 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
1969 2068 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
1970 2069 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
1971 2070 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
1972 2071 4.868171 TCGGAATTACTTGTCTCGGAAATG 59.132 41.667 0.00 0.00 0.00 2.32
1973 2072 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
1974 2073 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
1975 2074 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
1976 2075 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
1977 2076 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
1978 2077 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
1979 2078 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
1980 2079 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
1981 2080 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
1982 2081 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
1983 2082 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
1984 2083 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
1985 2084 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
1986 2085 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
1987 2086 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
1988 2087 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
1989 2088 1.341778 ACTACTCCCTCCGTTCGGAAT 60.342 52.381 14.79 2.09 33.41 3.01
1990 2089 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
1991 2090 0.038744 AACTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
1992 2091 1.674962 CTAACTACTCCCTCCGTTCGG 59.325 57.143 4.74 4.74 0.00 4.30
1993 2092 1.065251 GCTAACTACTCCCTCCGTTCG 59.935 57.143 0.00 0.00 0.00 3.95
1994 2093 2.097825 TGCTAACTACTCCCTCCGTTC 58.902 52.381 0.00 0.00 0.00 3.95
1995 2094 2.226962 TGCTAACTACTCCCTCCGTT 57.773 50.000 0.00 0.00 0.00 4.44
1996 2095 2.431057 CAATGCTAACTACTCCCTCCGT 59.569 50.000 0.00 0.00 0.00 4.69
1997 2096 2.431057 ACAATGCTAACTACTCCCTCCG 59.569 50.000 0.00 0.00 0.00 4.63
1998 2097 3.798202 CACAATGCTAACTACTCCCTCC 58.202 50.000 0.00 0.00 0.00 4.30
1999 2098 3.198872 GCACAATGCTAACTACTCCCTC 58.801 50.000 0.00 0.00 40.96 4.30
2000 2099 3.268023 GCACAATGCTAACTACTCCCT 57.732 47.619 0.00 0.00 40.96 4.20
2364 2466 2.277591 TTGCAGCATGTGAAGGGGC 61.278 57.895 0.00 0.00 39.31 5.80
2588 2707 5.663106 TCACCTCCTACTATTCAGATTGCTT 59.337 40.000 0.00 0.00 0.00 3.91
2592 2711 5.463154 AGCTCACCTCCTACTATTCAGATT 58.537 41.667 0.00 0.00 0.00 2.40
2593 2712 5.073437 AGCTCACCTCCTACTATTCAGAT 57.927 43.478 0.00 0.00 0.00 2.90
2708 2827 3.096092 AGACAAGTTTTGCTGGAACCAA 58.904 40.909 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.