AutoCloner

Multiple sequence alignment - TraesCS7B01G315600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G315600	chr7B	100.000	3317	0	0	1	3317	564171347	564174663	0.000000e+00	6126.0
1	TraesCS7B01G315600	chr7D	96.941	2550	65	5	778	3317	527706468	527709014	0.000000e+00	4265.0
2	TraesCS7B01G315600	chr7D	88.263	213	13	6	1955	2163	527709845	527710049	9.190000e-61	244.0
3	TraesCS7B01G315600	chr7A	97.062	1906	48	2	800	2698	607543737	607545641	0.000000e+00	3203.0
4	TraesCS7B01G315600	chr7A	96.986	564	17	0	2754	3317	607545640	607546203	0.000000e+00	948.0
5	TraesCS7B01G315600	chr7A	86.346	791	95	7	3	782	607523104	607523892	0.000000e+00	850.0
6	TraesCS7B01G315600	chr7A	86.425	221	11	9	1955	2170	607547043	607547249	1.200000e-54	224.0
7	TraesCS7B01G315600	chr7A	83.133	166	14	8	2714	2867	640674933	640674770	4.460000e-29	139.0
8	TraesCS7B01G315600	chr7A	94.545	55	2	1	2242	2295	607549863	607549917	2.120000e-12	84.2
9	TraesCS7B01G315600	chr2A	89.580	643	58	7	1	638	199711745	199712383	0.000000e+00	808.0
10	TraesCS7B01G315600	chr2A	81.818	165	18	8	2705	2859	57704778	57704940	9.660000e-26	128.0
11	TraesCS7B01G315600	chr2A	84.536	97	12	3	2766	2861	43659108	43659202	3.520000e-15	93.5
12	TraesCS7B01G315600	chr3D	89.392	641	62	6	1	638	398412791	398412154	0.000000e+00	802.0
13	TraesCS7B01G315600	chr3D	89.097	642	64	5	1	638	98610364	98611003	0.000000e+00	793.0
14	TraesCS7B01G315600	chr5D	89.236	641	61	7	1	638	407009906	407009271	0.000000e+00	795.0
15	TraesCS7B01G315600	chr3B	89.342	638	59	6	3	638	373287607	373286977	0.000000e+00	793.0
16	TraesCS7B01G315600	chr2D	89.028	638	63	6	3	638	364972518	364971886	0.000000e+00	784.0
17	TraesCS7B01G315600	chr2D	83.505	97	13	3	2766	2861	41905632	41905726	1.640000e-13	87.9
18	TraesCS7B01G315600	chr5B	88.768	641	58	11	1	638	488118567	488119196	0.000000e+00	773.0
19	TraesCS7B01G315600	chr4D	87.297	677	75	9	3	674	348294260	348294930	0.000000e+00	763.0
20	TraesCS7B01G315600	chr1A	87.912	182	21	1	1086	1267	78316097	78316277	2.590000e-51	213.0
21	TraesCS7B01G315600	chr1A	87.363	182	22	1	1086	1267	536801829	536802009	1.210000e-49	207.0
22	TraesCS7B01G315600	chr6A	86.813	182	23	1	1086	1267	88364802	88364982	5.610000e-48	202.0
23	TraesCS7B01G315600	chr1D	85.455	165	12	5	2705	2859	239336096	239335934	9.520000e-36	161.0
24	TraesCS7B01G315600	chr6B	82.609	184	15	8	2701	2867	133364234	133364051	2.670000e-31	147.0
25	TraesCS7B01G315600	chr4B	83.636	165	15	8	2705	2859	223394154	223394316	9.590000e-31	145.0
26	TraesCS7B01G315600	chr5A	82.677	127	10	8	2743	2859	529786688	529786812	5.850000e-18	102.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G315600	chr7B	564171347	564174663	3316	False	6126.0	6126	100.0000	1	3317	1	chr7B.!!$F1	3316
1	TraesCS7B01G315600	chr7D	527706468	527710049	3581	False	2254.5	4265	92.6020	778	3317	2	chr7D.!!$F1	2539
2	TraesCS7B01G315600	chr7A	607543737	607549917	6180	False	1114.8	3203	93.7545	800	3317	4	chr7A.!!$F2	2517
3	TraesCS7B01G315600	chr7A	607523104	607523892	788	False	850.0	850	86.3460	3	782	1	chr7A.!!$F1	779
4	TraesCS7B01G315600	chr2A	199711745	199712383	638	False	808.0	808	89.5800	1	638	1	chr2A.!!$F3	637
5	TraesCS7B01G315600	chr3D	398412154	398412791	637	True	802.0	802	89.3920	1	638	1	chr3D.!!$R1	637
6	TraesCS7B01G315600	chr3D	98610364	98611003	639	False	793.0	793	89.0970	1	638	1	chr3D.!!$F1	637
7	TraesCS7B01G315600	chr5D	407009271	407009906	635	True	795.0	795	89.2360	1	638	1	chr5D.!!$R1	637
8	TraesCS7B01G315600	chr3B	373286977	373287607	630	True	793.0	793	89.3420	3	638	1	chr3B.!!$R1	635
9	TraesCS7B01G315600	chr2D	364971886	364972518	632	True	784.0	784	89.0280	3	638	1	chr2D.!!$R1	635
10	TraesCS7B01G315600	chr5B	488118567	488119196	629	False	773.0	773	88.7680	1	638	1	chr5B.!!$F1	637
11	TraesCS7B01G315600	chr4D	348294260	348294930	670	False	763.0	763	87.2970	3	674	1	chr4D.!!$F1	671

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
706	729	0.037326	AGTCGACGTGTTGGATGCAT	60.037	50.0	10.46	0.0	0.0	3.96	F
708	731	0.795698	TCGACGTGTTGGATGCATTG	59.204	50.0	0.00	0.0	0.0	2.82	F
709	732	0.795698	CGACGTGTTGGATGCATTGA	59.204	50.0	0.00	0.0	0.0	2.57	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1651	1681	0.467384	AGAGATGGAACGGATGCCAG	59.533	55.0	0.00	0.0	37.64	4.85	R
2193	2223	0.875908	CGTCATGCCTGTATGGACGG	60.876	60.0	0.00	0.0	38.35	4.79	R
2534	2564	1.522668	CTGAAATCAGACGGCCACAA	58.477	50.0	2.24	0.0	46.59	3.33	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
109	110	2.606795	CGGCCACAACTACAACAAATGG	60.607	50.000	2.24	0.00	0.00	3.16
112	113	4.236935	GCCACAACTACAACAAATGGATG	58.763	43.478	0.00	0.00	0.00	3.51
229	231	4.070630	AGAGAGTGCTAGGAATTGATGC	57.929	45.455	0.00	0.00	0.00	3.91
244	246	3.899981	ATGCCGAGCGTGCCTTTGA	62.900	57.895	0.00	0.00	0.00	2.69
280	287	1.496060	TGGGGCATCGTTCAGTATCT	58.504	50.000	0.00	0.00	0.00	1.98
302	309	8.881051	ATCTTGCTAGAACTTGGAGCACCAAA	62.881	42.308	16.71	0.68	45.53	3.28
338	345	4.155462	GTGATGACTGCTTGTGTGATCATT	59.845	41.667	0.00	0.00	39.43	2.57
393	400	6.766467	GGAACGTATCTATGATCAAGGGTTTT	59.234	38.462	0.00	0.00	0.00	2.43
477	484	9.603921	GGTTCATCCAATTTCATCATAAAATGT	57.396	29.630	0.00	0.00	35.97	2.71
501	509	5.163530	TGTGATTGAAAAACTCACATGCAGT	60.164	36.000	0.00	0.00	43.10	4.40
528	536	7.492020	TGCAAAATGATTTGGTTGAGTATATGC	59.508	33.333	0.00	0.00	44.93	3.14
531	540	5.029807	TGATTTGGTTGAGTATATGCGGA	57.970	39.130	0.00	0.00	0.00	5.54
537	546	6.353404	TGGTTGAGTATATGCGGAATCATA	57.647	37.500	0.00	0.00	33.89	2.15
657	672	8.518430	AACTATCCAATGTGTGCATATTTGTA	57.482	30.769	0.00	0.00	34.39	2.41
659	674	7.775093	ACTATCCAATGTGTGCATATTTGTAGT	59.225	33.333	0.00	0.00	34.39	2.73
666	681	9.973450	AATGTGTGCATATTTGTAGTAAAACAA	57.027	25.926	0.00	0.00	34.75	2.83
674	689	6.909550	ATTTGTAGTAAAACAATGGCCAGA	57.090	33.333	13.05	0.00	39.04	3.86
676	691	4.980573	TGTAGTAAAACAATGGCCAGACT	58.019	39.130	13.05	7.97	0.00	3.24
677	692	6.116711	TGTAGTAAAACAATGGCCAGACTA	57.883	37.500	13.05	7.01	0.00	2.59
692	715	4.499865	GCCAGACTAGCAAATATGAGTCGA	60.500	45.833	0.00	0.00	42.56	4.20
695	718	4.335874	AGACTAGCAAATATGAGTCGACGT	59.664	41.667	10.46	3.12	42.56	4.34
699	722	3.367932	AGCAAATATGAGTCGACGTGTTG	59.632	43.478	10.46	10.71	0.00	3.33
701	724	3.861276	AATATGAGTCGACGTGTTGGA	57.139	42.857	10.46	0.00	0.00	3.53
702	725	4.386867	AATATGAGTCGACGTGTTGGAT	57.613	40.909	10.46	0.00	0.00	3.41
706	729	0.037326	AGTCGACGTGTTGGATGCAT	60.037	50.000	10.46	0.00	0.00	3.96
708	731	0.795698	TCGACGTGTTGGATGCATTG	59.204	50.000	0.00	0.00	0.00	2.82
709	732	0.795698	CGACGTGTTGGATGCATTGA	59.204	50.000	0.00	0.00	0.00	2.57
711	734	1.535028	GACGTGTTGGATGCATTGACA	59.465	47.619	0.00	3.59	0.00	3.58
731	754	7.395190	TGACAATCCAAATCATAAACAGGAG	57.605	36.000	0.00	0.00	0.00	3.69
733	756	5.658190	ACAATCCAAATCATAAACAGGAGGG	59.342	40.000	0.00	0.00	0.00	4.30
735	758	4.855340	TCCAAATCATAAACAGGAGGGAC	58.145	43.478	0.00	0.00	0.00	4.46
737	760	2.622064	ATCATAAACAGGAGGGACGC	57.378	50.000	0.00	0.00	0.00	5.19
771	794	1.335597	GGCCTAAACCGACAAAAGCAC	60.336	52.381	0.00	0.00	0.00	4.40
772	795	1.662026	GCCTAAACCGACAAAAGCACG	60.662	52.381	0.00	0.00	0.00	5.34
790	813	2.145905	GCAAAATCGCGCGTTGGAG	61.146	57.895	30.98	18.51	0.00	3.86
799	822	1.289109	GCGCGTTGGAGTTGCTCTAA	61.289	55.000	8.43	0.00	0.00	2.10
800	823	1.144969	CGCGTTGGAGTTGCTCTAAA	58.855	50.000	0.00	0.00	33.06	1.85
803	826	2.096218	GCGTTGGAGTTGCTCTAAAGTG	60.096	50.000	9.06	0.46	34.33	3.16
804	827	2.480419	CGTTGGAGTTGCTCTAAAGTGG	59.520	50.000	0.00	0.00	33.06	4.00
836	859	4.100084	TGCCACTGCGAGATGGGG	62.100	66.667	0.00	0.00	41.78	4.96
889	919	1.710816	CTCTCGGCCTCCTTATCCTT	58.289	55.000	0.00	0.00	0.00	3.36
958	988	1.227704	CCCAAACAAAAACCCCGCC	60.228	57.895	0.00	0.00	0.00	6.13
1161	1191	2.435059	GCCTTCTTCGGCTCGCTT	60.435	61.111	0.00	0.00	46.63	4.68
1326	1356	4.437239	CTGTTCTGGAGTTTATCGATGCT	58.563	43.478	8.54	3.36	0.00	3.79
1524	1554	5.955961	TTCAGTCAGATGTGATATTGGGA	57.044	39.130	0.00	0.00	34.36	4.37
1554	1584	2.550830	TTGAGGCTCCTGTTCTGTTC	57.449	50.000	12.86	0.00	0.00	3.18
1565	1595	1.087501	GTTCTGTTCCGAGGGATTGC	58.912	55.000	0.00	0.00	0.00	3.56
1731	1761	5.047847	GCTAGGAATAATGCTCGTGTGTTA	58.952	41.667	0.00	0.00	0.00	2.41
1893	1923	3.126514	GTCATCTGAAGGCAGTGAATGTG	59.873	47.826	0.00	0.00	42.84	3.21
1895	1925	3.708403	TCTGAAGGCAGTGAATGTGAT	57.292	42.857	0.00	0.00	42.84	3.06
1992	2022	8.497910	AGATATATGAATGGTCTGGTACAAGT	57.502	34.615	0.00	0.00	38.70	3.16
2193	2223	2.816087	TCTTGCAAAGCAGATTCCAGTC	59.184	45.455	0.00	0.00	45.70	3.51
2327	2357	8.309656	CCTGTATCACAAATAGATAGCTCATCA	58.690	37.037	0.00	0.00	35.96	3.07
2349	2379	5.938125	TCAAGTAGTGGAAGTAAATCAAGGC	59.062	40.000	0.00	0.00	0.00	4.35
2352	2382	2.039879	AGTGGAAGTAAATCAAGGCGGT	59.960	45.455	0.00	0.00	0.00	5.68
2376	2406	5.887035	TGATGGAATTGTGATGTCATAAGCA	59.113	36.000	0.00	0.00	30.66	3.91
2409	2439	5.343307	AGGTGCAATTTTATGGAACCATC	57.657	39.130	9.75	0.00	37.82	3.51
2618	2648	4.220602	GTGTGATGGCTTTTATTGGGTTCT	59.779	41.667	0.00	0.00	0.00	3.01
3034	3066	3.157087	CATCAGTTAAGGCCTGGTGTTT	58.843	45.455	5.69	0.00	36.51	2.83
3037	3069	3.157087	CAGTTAAGGCCTGGTGTTTGAT	58.843	45.455	5.69	0.00	0.00	2.57
3056	3088	5.871465	TGATGATTTTTCGTCAAATCGGA	57.129	34.783	13.67	0.00	43.47	4.55
3062	3094	0.606096	TTCGTCAAATCGGAGCCTGA	59.394	50.000	0.00	0.00	0.00	3.86
3284	3316	8.266392	TGTTTCATTGTTCAGAATTTGCTTTT	57.734	26.923	0.00	0.00	0.00	2.27

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
21	22	1.157870	AAACACCGGTGAGCGTTGAG	61.158	55.000	40.21	11.64	0.00	3.02
52	53	1.826054	CGGTGGGTTGTTGCCTTCA	60.826	57.895	0.00	0.00	0.00	3.02
109	110	5.074115	AGATACTGTCACCTAGGTAGCATC	58.926	45.833	15.80	13.88	0.00	3.91
112	113	5.648960	GGATAGATACTGTCACCTAGGTAGC	59.351	48.000	15.80	10.92	0.00	3.58
179	180	6.881602	TCTTAGCAAATCTTTTCCTCTTCTCC	59.118	38.462	0.00	0.00	0.00	3.71
223	225	3.899981	AAGGCACGCTCGGCATCAA	62.900	57.895	0.00	0.00	0.00	2.57
224	226	3.899981	AAAGGCACGCTCGGCATCA	62.900	57.895	0.00	0.00	0.00	3.07
229	231	1.577328	AACATCAAAGGCACGCTCGG	61.577	55.000	0.00	0.00	0.00	4.63
244	246	2.569059	CCCATCGAGATTGCAGAACAT	58.431	47.619	0.00	0.00	0.00	2.71
274	281	4.467795	TGCTCCAAGTTCTAGCAAGATACT	59.532	41.667	6.26	0.00	42.96	2.12
280	287	1.419762	TGGTGCTCCAAGTTCTAGCAA	59.580	47.619	4.68	0.00	47.00	3.91
302	309	1.002087	GTCATCACCTCCCACGACTTT	59.998	52.381	0.00	0.00	0.00	2.66
338	345	6.349694	GCTCATCCTCTACGATCATATTGTGA	60.350	42.308	0.00	0.00	42.06	3.58
393	400	5.063204	CACAACATTCTCACCCTGAAACTA	58.937	41.667	0.00	0.00	0.00	2.24
451	458	9.603921	ACATTTTATGATGAAATTGGATGAACC	57.396	29.630	0.00	0.00	39.54	3.62
501	509	9.368674	CATATACTCAACCAAATCATTTTGCAA	57.631	29.630	0.00	0.00	40.77	4.08
528	536	2.951642	ACTGGTTGCCAATATGATTCCG	59.048	45.455	0.00	0.00	30.80	4.30
531	540	6.367983	ACATCTACTGGTTGCCAATATGATT	58.632	36.000	0.00	0.00	30.80	2.57
537	546	5.636903	AGATACATCTACTGGTTGCCAAT	57.363	39.130	0.00	0.00	34.85	3.16
629	642	4.621068	ATGCACACATTGGATAGTTTCG	57.379	40.909	0.00	0.00	33.76	3.46
638	651	8.859156	GTTTTACTACAAATATGCACACATTGG	58.141	33.333	0.00	0.00	37.74	3.16
657	672	4.010349	GCTAGTCTGGCCATTGTTTTACT	58.990	43.478	5.51	4.27	0.00	2.24
659	674	4.027674	TGCTAGTCTGGCCATTGTTTTA	57.972	40.909	5.51	0.00	0.00	1.52
666	681	4.103785	ACTCATATTTGCTAGTCTGGCCAT	59.896	41.667	5.51	0.00	0.00	4.40
674	689	4.142447	ACACGTCGACTCATATTTGCTAGT	60.142	41.667	14.70	0.00	0.00	2.57
676	691	4.365899	ACACGTCGACTCATATTTGCTA	57.634	40.909	14.70	0.00	0.00	3.49
677	692	3.232213	ACACGTCGACTCATATTTGCT	57.768	42.857	14.70	0.00	0.00	3.91
692	715	1.603456	TGTCAATGCATCCAACACGT	58.397	45.000	0.00	0.00	0.00	4.49
695	718	3.163467	TGGATTGTCAATGCATCCAACA	58.837	40.909	15.07	1.92	38.35	3.33
699	722	5.013568	TGATTTGGATTGTCAATGCATCC	57.986	39.130	19.04	8.12	39.05	3.51
701	724	8.041919	TGTTTATGATTTGGATTGTCAATGCAT	58.958	29.630	19.04	6.73	39.05	3.96
702	725	7.384477	TGTTTATGATTTGGATTGTCAATGCA	58.616	30.769	15.07	15.07	37.45	3.96
706	729	7.093814	CCTCCTGTTTATGATTTGGATTGTCAA	60.094	37.037	0.00	0.00	0.00	3.18
708	731	6.183360	CCCTCCTGTTTATGATTTGGATTGTC	60.183	42.308	0.00	0.00	0.00	3.18
709	732	5.658190	CCCTCCTGTTTATGATTTGGATTGT	59.342	40.000	0.00	0.00	0.00	2.71
711	734	5.893824	GTCCCTCCTGTTTATGATTTGGATT	59.106	40.000	0.00	0.00	0.00	3.01
752	775	1.662026	CGTGCTTTTGTCGGTTTAGGC	60.662	52.381	0.00	0.00	0.00	3.93
755	778	1.015109	TGCGTGCTTTTGTCGGTTTA	58.985	45.000	0.00	0.00	0.00	2.01
760	783	1.120551	CGATTTTGCGTGCTTTTGTCG	59.879	47.619	0.00	0.00	0.00	4.35
772	795	2.127042	TCCAACGCGCGATTTTGC	60.127	55.556	39.36	0.00	0.00	3.68
790	813	1.461127	CACGAGCCACTTTAGAGCAAC	59.539	52.381	0.00	0.00	0.00	4.17
799	822	1.618837	AGTCATACACACGAGCCACTT	59.381	47.619	0.00	0.00	0.00	3.16
800	823	1.067565	CAGTCATACACACGAGCCACT	60.068	52.381	0.00	0.00	0.00	4.00
803	826	1.084370	GGCAGTCATACACACGAGCC	61.084	60.000	0.00	0.00	34.25	4.70
804	827	0.389817	TGGCAGTCATACACACGAGC	60.390	55.000	0.00	0.00	0.00	5.03
889	919	0.340208	GGAGAGGAGAAGGGGAAGGA	59.660	60.000	0.00	0.00	0.00	3.36
1254	1284	2.107141	GTCGATGGGGCGAAGAGG	59.893	66.667	0.00	0.00	42.55	3.69
1278	1308	3.383681	TCCACCGATCCGCCGAAA	61.384	61.111	0.00	0.00	0.00	3.46
1326	1356	1.543208	GCCAGAATCATATCGTGCCCA	60.543	52.381	0.00	0.00	0.00	5.36
1524	1554	4.021916	CAGGAGCCTCAATCTTTTTGGAT	58.978	43.478	0.00	0.00	0.00	3.41
1554	1584	3.957535	GCATGCGCAATCCCTCGG	61.958	66.667	17.11	0.00	38.36	4.63
1651	1681	0.467384	AGAGATGGAACGGATGCCAG	59.533	55.000	0.00	0.00	37.64	4.85
1731	1761	9.347240	CTAAACAAATCCAGTGATCCAGATATT	57.653	33.333	0.00	0.00	0.00	1.28
1992	2022	3.084536	TCAGCAACATATGGCTTCCAA	57.915	42.857	7.80	0.00	38.56	3.53
2193	2223	0.875908	CGTCATGCCTGTATGGACGG	60.876	60.000	0.00	0.00	38.35	4.79
2327	2357	4.935808	CGCCTTGATTTACTTCCACTACTT	59.064	41.667	0.00	0.00	0.00	2.24
2349	2379	3.009026	TGACATCACAATTCCATCACCG	58.991	45.455	0.00	0.00	0.00	4.94
2352	2382	5.887035	TGCTTATGACATCACAATTCCATCA	59.113	36.000	0.00	0.00	0.00	3.07
2376	2406	7.201938	CCATAAAATTGCACCTAAGATCACCAT	60.202	37.037	0.00	0.00	0.00	3.55
2409	2439	3.559238	ACAGATTGGCGCTACAAAAAG	57.441	42.857	7.64	0.96	33.48	2.27
2534	2564	1.522668	CTGAAATCAGACGGCCACAA	58.477	50.000	2.24	0.00	46.59	3.33
2693	2723	9.274206	GAAAAACTAATAAGACCACAGACTTCT	57.726	33.333	0.00	0.00	30.49	2.85
3034	3066	5.673568	GCTCCGATTTGACGAAAAATCATCA	60.674	40.000	19.89	8.16	43.69	3.07
3037	3069	3.119990	GGCTCCGATTTGACGAAAAATCA	60.120	43.478	19.89	0.00	43.69	2.57
3056	3088	0.258774	AAAACACCACCAGTCAGGCT	59.741	50.000	0.00	0.00	43.14	4.58
3062	3094	1.152839	CCGGGAAAACACCACCAGT	60.153	57.895	0.00	0.00	0.00	4.00
3284	3316	8.547894	CGATAAATTGATATTGTTGAGGAACGA	58.452	33.333	0.00	0.00	34.49	3.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.