Multiple sequence alignment - TraesCS7B01G315500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G315500 chr7B 100.000 4408 0 0 1 4408 563478777 563474370 0.000000e+00 8141.0
1 TraesCS7B01G315500 chr7B 95.746 2139 76 8 1445 3576 563660353 563658223 0.000000e+00 3432.0
2 TraesCS7B01G315500 chr7B 90.803 2316 166 22 207 2492 563737635 563735337 0.000000e+00 3053.0
3 TraesCS7B01G315500 chr7B 94.877 1952 90 3 627 2571 562995258 562993310 0.000000e+00 3042.0
4 TraesCS7B01G315500 chr7B 88.106 866 64 19 2810 3652 563735097 563734248 0.000000e+00 992.0
5 TraesCS7B01G315500 chr7B 95.522 268 6 1 3547 3808 563658216 563657949 1.470000e-114 424.0
6 TraesCS7B01G315500 chr7B 87.795 254 22 2 221 474 563672463 563672219 5.580000e-74 289.0
7 TraesCS7B01G315500 chr7B 97.692 130 3 0 1 130 562995478 562995349 1.600000e-54 224.0
8 TraesCS7B01G315500 chr7B 98.000 100 1 1 3905 4003 563657790 563657691 5.860000e-39 172.0
9 TraesCS7B01G315500 chr7B 93.023 86 5 1 126 210 563672609 563672524 1.660000e-24 124.0
10 TraesCS7B01G315500 chr7B 96.000 75 2 1 3865 3938 81425055 81424981 2.150000e-23 121.0
11 TraesCS7B01G315500 chr7D 93.080 3396 164 29 213 3576 526529321 526525965 0.000000e+00 4903.0
12 TraesCS7B01G315500 chr7D 94.816 2334 76 11 1339 3668 526497918 526495626 0.000000e+00 3598.0
13 TraesCS7B01G315500 chr7D 95.542 2243 77 12 1339 3576 526445869 526443645 0.000000e+00 3567.0
14 TraesCS7B01G315500 chr7D 90.503 2506 179 25 221 2694 526976616 526974138 0.000000e+00 3254.0
15 TraesCS7B01G315500 chr7D 90.339 2505 184 26 221 2694 527197936 527195459 0.000000e+00 3232.0
16 TraesCS7B01G315500 chr7D 90.167 2512 182 27 221 2701 526805186 526802709 0.000000e+00 3210.0
17 TraesCS7B01G315500 chr7D 94.431 2029 106 5 546 2571 526380791 526378767 0.000000e+00 3114.0
18 TraesCS7B01G315500 chr7D 95.141 782 32 4 497 1273 526498695 526497915 0.000000e+00 1229.0
19 TraesCS7B01G315500 chr7D 95.013 782 33 4 497 1273 526446646 526445866 0.000000e+00 1223.0
20 TraesCS7B01G315500 chr7D 87.660 859 69 19 2819 3653 527195381 527194536 0.000000e+00 965.0
21 TraesCS7B01G315500 chr7D 89.853 749 54 8 2903 3638 526974001 526973262 0.000000e+00 942.0
22 TraesCS7B01G315500 chr7D 89.920 625 46 13 2819 3433 526802635 526802018 0.000000e+00 789.0
23 TraesCS7B01G315500 chr7D 95.604 273 12 0 207 479 526381051 526380779 5.230000e-119 438.0
24 TraesCS7B01G315500 chr7D 96.935 261 7 1 3547 3807 526525958 526525699 1.880000e-118 436.0
25 TraesCS7B01G315500 chr7D 80.737 353 44 16 4026 4360 578520464 578520810 2.030000e-63 254.0
26 TraesCS7B01G315500 chr7D 97.183 142 4 0 3666 3807 526495545 526495404 1.580000e-59 241.0
27 TraesCS7B01G315500 chr7D 89.785 186 5 4 1 172 526446828 526446643 4.440000e-55 226.0
28 TraesCS7B01G315500 chr7D 95.070 142 7 0 3547 3688 526443638 526443497 1.600000e-54 224.0
29 TraesCS7B01G315500 chr7D 89.247 186 6 4 1 172 526498877 526498692 2.060000e-53 220.0
30 TraesCS7B01G315500 chr7D 84.774 243 4 5 1 210 526381337 526381095 3.450000e-51 213.0
31 TraesCS7B01G315500 chr7D 85.354 198 23 4 3457 3653 526800880 526800688 2.690000e-47 200.0
32 TraesCS7B01G315500 chr7D 94.828 116 5 1 3690 3804 526443332 526443217 3.500000e-41 180.0
33 TraesCS7B01G315500 chr7D 86.331 139 10 1 2812 2941 526378527 526378389 4.600000e-30 143.0
34 TraesCS7B01G315500 chr7D 96.552 87 1 2 3918 4003 526525565 526525480 4.600000e-30 143.0
35 TraesCS7B01G315500 chr7D 93.023 86 5 1 126 210 526529456 526529371 1.660000e-24 124.0
36 TraesCS7B01G315500 chr7D 92.405 79 3 3 3858 3933 2016414 2016336 4.660000e-20 110.0
37 TraesCS7B01G315500 chr7D 89.873 79 3 4 3858 3933 87752910 87752834 3.630000e-16 97.1
38 TraesCS7B01G315500 chr7D 85.714 84 10 2 2741 2822 188809850 188809767 2.180000e-13 87.9
39 TraesCS7B01G315500 chr7D 90.323 62 3 1 2755 2813 126050292 126050231 1.310000e-10 78.7
40 TraesCS7B01G315500 chr7D 97.059 34 1 0 3597 3630 526443644 526443611 1.710000e-04 58.4
41 TraesCS7B01G315500 chr7A 96.780 2143 56 8 1339 3476 606637171 606635037 0.000000e+00 3563.0
42 TraesCS7B01G315500 chr7A 89.988 2577 195 35 213 2747 606942066 606939511 0.000000e+00 3271.0
43 TraesCS7B01G315500 chr7A 91.791 1072 56 19 207 1273 606638212 606637168 0.000000e+00 1463.0
44 TraesCS7B01G315500 chr7A 95.367 259 11 1 3547 3804 606634877 606634619 1.140000e-110 411.0
45 TraesCS7B01G315500 chr7A 97.368 114 3 0 3463 3576 606634997 606634884 1.250000e-45 195.0
46 TraesCS7B01G315500 chr7A 81.043 211 30 8 1 210 606638457 606638256 4.560000e-35 159.0
47 TraesCS7B01G315500 chr7A 82.443 131 4 9 3804 3933 665746007 665746119 3.630000e-16 97.1
48 TraesCS7B01G315500 chr7A 86.842 76 1 2 3928 4003 606634544 606634478 4.730000e-10 76.8
49 TraesCS7B01G315500 chr7A 97.436 39 1 0 2775 2813 714536732 714536694 2.850000e-07 67.6
50 TraesCS7B01G315500 chr4D 83.886 422 29 12 4011 4408 289349167 289348761 2.510000e-97 366.0
51 TraesCS7B01G315500 chr4D 83.239 352 35 8 4026 4361 497650922 497650579 7.170000e-78 302.0
52 TraesCS7B01G315500 chr4D 76.471 272 26 18 4157 4408 67355376 67355629 3.600000e-21 113.0
53 TraesCS7B01G315500 chr6D 82.843 408 44 14 4011 4408 12175320 12175711 4.220000e-90 342.0
54 TraesCS7B01G315500 chr6D 78.009 432 47 21 4011 4408 291972486 291972903 1.230000e-55 228.0
55 TraesCS7B01G315500 chr6D 78.947 266 26 14 4157 4408 13145017 13144768 2.120000e-33 154.0
56 TraesCS7B01G315500 chr6D 83.621 116 15 3 4246 4359 174372719 174372606 6.030000e-19 106.0
57 TraesCS7B01G315500 chr4A 82.222 405 38 13 4019 4407 625475778 625476164 7.110000e-83 318.0
58 TraesCS7B01G315500 chr4A 79.205 327 51 14 4027 4348 719103841 719103527 1.240000e-50 211.0
59 TraesCS7B01G315500 chr4A 80.069 291 47 9 4011 4296 741311683 741311399 5.780000e-49 206.0
60 TraesCS7B01G315500 chr4A 89.333 75 8 0 3868 3942 28558177 28558103 1.310000e-15 95.3
61 TraesCS7B01G315500 chr3D 78.589 397 53 14 4029 4408 611883647 611883266 2.650000e-57 233.0
62 TraesCS7B01G315500 chr3D 92.405 79 3 3 3858 3933 289811162 289811084 4.660000e-20 110.0
63 TraesCS7B01G315500 chr3A 79.634 383 31 16 4026 4365 114585999 114585621 9.530000e-57 231.0
64 TraesCS7B01G315500 chr3A 76.267 434 41 26 4018 4401 503096157 503096578 1.630000e-39 174.0
65 TraesCS7B01G315500 chr3A 88.000 125 4 4 4284 4408 403528 403415 2.140000e-28 137.0
66 TraesCS7B01G315500 chr3A 100.000 67 0 0 3865 3931 607108116 607108182 1.660000e-24 124.0
67 TraesCS7B01G315500 chr3A 87.143 70 9 0 2746 2815 12422014 12421945 3.650000e-11 80.5
68 TraesCS7B01G315500 chr5D 80.612 294 41 12 4018 4304 10683718 10683434 3.450000e-51 213.0
69 TraesCS7B01G315500 chr5D 82.486 177 9 5 4244 4408 208129694 208129528 7.690000e-28 135.0
70 TraesCS7B01G315500 chr5D 98.438 64 1 0 3868 3931 537964114 537964051 3.600000e-21 113.0
71 TraesCS7B01G315500 chr5D 92.308 78 6 0 3865 3942 287440978 287440901 1.300000e-20 111.0
72 TraesCS7B01G315500 chr5D 81.818 143 7 11 3796 3937 547051963 547051839 7.800000e-18 102.0
73 TraesCS7B01G315500 chr5D 90.909 77 4 3 3858 3931 113388519 113388595 2.810000e-17 100.0
74 TraesCS7B01G315500 chrUn 80.069 291 47 9 4011 4296 51365245 51365529 5.780000e-49 206.0
75 TraesCS7B01G315500 chrUn 80.069 291 47 9 4011 4296 290422162 290422446 5.780000e-49 206.0
76 TraesCS7B01G315500 chr2D 82.353 272 15 8 4160 4408 186312190 186311929 5.780000e-49 206.0
77 TraesCS7B01G315500 chr2D 97.183 71 2 0 3865 3935 535222119 535222189 2.150000e-23 121.0
78 TraesCS7B01G315500 chr5B 76.415 424 59 22 4011 4405 580727493 580727082 1.620000e-44 191.0
79 TraesCS7B01G315500 chr5B 86.076 79 1 4 3865 3933 710624939 710624861 4.730000e-10 76.8
80 TraesCS7B01G315500 chr6A 76.606 436 39 17 4026 4408 200242271 200242696 9.740000e-42 182.0
81 TraesCS7B01G315500 chr6A 90.909 77 6 1 3858 3934 8390520 8390445 7.800000e-18 102.0
82 TraesCS7B01G315500 chr6A 97.561 41 0 1 4369 4408 332184210 332184250 7.910000e-08 69.4
83 TraesCS7B01G315500 chr6A 100.000 33 0 0 3809 3841 45029557 45029589 1.320000e-05 62.1
84 TraesCS7B01G315500 chr1D 84.848 165 12 5 4244 4408 430421211 430421362 2.120000e-33 154.0
85 TraesCS7B01G315500 chr1D 77.256 277 24 17 4149 4408 292514800 292515054 4.630000e-25 126.0
86 TraesCS7B01G315500 chr1D 97.297 74 2 0 3865 3938 308456469 308456542 4.630000e-25 126.0
87 TraesCS7B01G315500 chr1D 92.405 79 3 3 3858 3933 12309093 12309171 4.660000e-20 110.0
88 TraesCS7B01G315500 chr1A 97.297 74 1 1 3865 3937 208212599 208212526 1.660000e-24 124.0
89 TraesCS7B01G315500 chr1A 78.613 173 17 11 4246 4408 3779807 3779969 3.630000e-16 97.1
90 TraesCS7B01G315500 chr2B 97.183 71 2 0 3865 3935 636551371 636551441 2.150000e-23 121.0
91 TraesCS7B01G315500 chr2B 80.282 142 8 10 3799 3937 158642096 158642220 6.070000e-14 89.8
92 TraesCS7B01G315500 chr2A 85.827 127 2 7 3809 3935 78845583 78845693 2.150000e-23 121.0
93 TraesCS7B01G315500 chr2A 95.946 74 3 0 3865 3938 708060434 708060507 2.150000e-23 121.0
94 TraesCS7B01G315500 chr2A 97.368 38 0 1 3804 3841 73160087 73160123 3.680000e-06 63.9
95 TraesCS7B01G315500 chr2A 93.023 43 2 1 3799 3841 104969676 104969717 1.320000e-05 62.1
96 TraesCS7B01G315500 chr4B 92.000 75 2 4 3858 3931 16060915 16060844 7.800000e-18 102.0
97 TraesCS7B01G315500 chr6B 81.955 133 7 8 3800 3932 279907394 279907509 3.630000e-16 97.1
98 TraesCS7B01G315500 chr5A 96.610 59 1 1 2759 2816 406535009 406535067 3.630000e-16 97.1
99 TraesCS7B01G315500 chr5A 76.923 117 21 4 4246 4359 650674047 650674160 1.320000e-05 62.1
100 TraesCS7B01G315500 chr1B 91.803 61 2 1 2759 2816 676266374 676266434 1.020000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G315500 chr7B 563474370 563478777 4407 True 8141.000000 8141 100.000000 1 4408 1 chr7B.!!$R2 4407
1 TraesCS7B01G315500 chr7B 563734248 563737635 3387 True 2022.500000 3053 89.454500 207 3652 2 chr7B.!!$R6 3445
2 TraesCS7B01G315500 chr7B 562993310 562995478 2168 True 1633.000000 3042 96.284500 1 2571 2 chr7B.!!$R3 2570
3 TraesCS7B01G315500 chr7B 563657691 563660353 2662 True 1342.666667 3432 96.422667 1445 4003 3 chr7B.!!$R4 2558
4 TraesCS7B01G315500 chr7D 527194536 527197936 3400 True 2098.500000 3232 88.999500 221 3653 2 chr7D.!!$R11 3432
5 TraesCS7B01G315500 chr7D 526973262 526976616 3354 True 2098.000000 3254 90.178000 221 3638 2 chr7D.!!$R10 3417
6 TraesCS7B01G315500 chr7D 526525480 526529456 3976 True 1401.500000 4903 94.897500 126 4003 4 chr7D.!!$R8 3877
7 TraesCS7B01G315500 chr7D 526800688 526805186 4498 True 1399.666667 3210 88.480333 221 3653 3 chr7D.!!$R9 3432
8 TraesCS7B01G315500 chr7D 526495404 526498877 3473 True 1322.000000 3598 94.096750 1 3807 4 chr7D.!!$R7 3806
9 TraesCS7B01G315500 chr7D 526378389 526381337 2948 True 977.000000 3114 90.285000 1 2941 4 chr7D.!!$R5 2940
10 TraesCS7B01G315500 chr7D 526443217 526446828 3611 True 913.066667 3567 94.549500 1 3804 6 chr7D.!!$R6 3803
11 TraesCS7B01G315500 chr7A 606939511 606942066 2555 True 3271.000000 3271 89.988000 213 2747 1 chr7A.!!$R1 2534
12 TraesCS7B01G315500 chr7A 606634478 606638457 3979 True 977.966667 3563 91.531833 1 4003 6 chr7A.!!$R3 4002

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
459 544 0.747283 CAAGCTCATGCCTCCAGTCC 60.747 60.0 0.00 0.0 40.80 3.85 F
2313 2444 0.814410 CTGAGATCAGCAGCGGCATT 60.814 55.0 12.44 0.0 44.61 3.56 F
2373 2504 0.236711 CCAGAAAAGCGTCTGCACAG 59.763 55.0 8.98 0.0 46.23 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2317 2448 1.271926 GCCCAGTTGGATTGTACAGGT 60.272 52.381 0.0 0.00 37.39 4.00 R
3410 3683 0.033504 TCAACTGAAGGCCGTCACTC 59.966 55.000 18.1 1.14 0.00 3.51 R
4271 6118 0.040067 ACGACGACTACACCCGTTTC 60.040 55.000 0.0 0.00 39.30 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 2.579201 CGCTGGACTTCGGGATGT 59.421 61.111 0.00 0.00 0.00 3.06
266 347 4.687483 CCTTCAGGATTGCAAACATCAAAC 59.313 41.667 1.71 0.00 37.39 2.93
349 431 2.634600 CCATGGTGAAAATGGCCAATG 58.365 47.619 10.96 6.12 38.32 2.82
459 544 0.747283 CAAGCTCATGCCTCCAGTCC 60.747 60.000 0.00 0.00 40.80 3.85
479 564 6.807230 CAGTCCGCTGGTAAATATACTATGAC 59.193 42.308 0.00 0.00 39.01 3.06
483 568 5.867716 CGCTGGTAAATATACTATGACCCAC 59.132 44.000 0.00 0.00 32.36 4.61
486 571 7.311092 TGGTAAATATACTATGACCCACTGG 57.689 40.000 0.00 0.00 33.10 4.00
793 885 4.947645 TCATTGCTTTCCTTCAGGTTTTG 58.052 39.130 0.00 0.00 36.34 2.44
831 923 2.876550 AGACAAGTAACCGTGGAAAAGC 59.123 45.455 0.00 0.00 0.00 3.51
1021 1149 7.235935 TGGATGCTCAGAAAAATGAAGAAAT 57.764 32.000 0.00 0.00 0.00 2.17
1216 1347 7.013274 CCAAGGTTGAGAAAAGTGATTACTTCA 59.987 37.037 3.00 0.00 46.14 3.02
1245 1376 4.484236 CGTCAGCAAAATCAATAGGCAAA 58.516 39.130 0.00 0.00 0.00 3.68
1804 1935 8.482943 GGGAAATTACAAGGTTTTTATATGGCT 58.517 33.333 0.00 0.00 0.00 4.75
1938 2069 3.110705 AGTAGGTCTGGTGCAGATGATT 58.889 45.455 0.00 0.00 42.73 2.57
1944 2075 2.767960 TCTGGTGCAGATGATTAGCTCA 59.232 45.455 0.00 0.00 35.39 4.26
2116 2247 4.023980 TGATATCTGTCCGATGGGTATCC 58.976 47.826 3.98 0.00 33.48 2.59
2202 2333 7.624549 ACTTCTATTGGTGTATGATTGACAGT 58.375 34.615 0.00 0.00 0.00 3.55
2313 2444 0.814410 CTGAGATCAGCAGCGGCATT 60.814 55.000 12.44 0.00 44.61 3.56
2373 2504 0.236711 CCAGAAAAGCGTCTGCACAG 59.763 55.000 8.98 0.00 46.23 3.66
3008 3274 2.354203 CCAAGCTTACCCTCACTGAGAC 60.354 54.545 7.69 0.00 0.00 3.36
3014 3280 2.260639 ACCCTCACTGAGACCATCAT 57.739 50.000 7.69 0.00 37.28 2.45
3043 3309 7.781548 TCATTCATCAGTTCACATCATACTG 57.218 36.000 0.00 0.00 40.42 2.74
3044 3310 7.333323 TCATTCATCAGTTCACATCATACTGT 58.667 34.615 0.00 0.00 40.08 3.55
3079 3346 4.931661 TCTTCTTACCACGTTTCTCACT 57.068 40.909 0.00 0.00 0.00 3.41
3080 3347 5.272283 TCTTCTTACCACGTTTCTCACTT 57.728 39.130 0.00 0.00 0.00 3.16
3081 3348 5.047847 TCTTCTTACCACGTTTCTCACTTG 58.952 41.667 0.00 0.00 0.00 3.16
3082 3349 4.659111 TCTTACCACGTTTCTCACTTGA 57.341 40.909 0.00 0.00 0.00 3.02
3083 3350 5.013568 TCTTACCACGTTTCTCACTTGAA 57.986 39.130 0.00 0.00 0.00 2.69
3095 3363 5.428496 TCTCACTTGAAATTGCAGTTCAG 57.572 39.130 12.89 10.51 36.41 3.02
3110 3378 2.048222 CAGTGGTGGTCGACGCAT 60.048 61.111 9.92 0.00 0.00 4.73
3409 3682 4.363990 CGCTGGTCGCCACTGACT 62.364 66.667 0.00 0.00 38.91 3.41
3410 3683 2.740055 GCTGGTCGCCACTGACTG 60.740 66.667 0.00 0.00 38.91 3.51
3461 4848 3.071479 TCTCCTCCGTTTTGTTATGTGC 58.929 45.455 0.00 0.00 0.00 4.57
3623 5136 5.923733 TTGTTATGTTGTTGAAACCCTGT 57.076 34.783 0.00 0.00 0.00 4.00
3816 5662 5.530915 TCATCTCTTCTTTTGCTCCGAAAAA 59.469 36.000 0.00 0.00 0.00 1.94
3824 5670 0.951558 TGCTCCGAAAAAGCTTGTCC 59.048 50.000 0.00 0.00 40.50 4.02
3825 5671 0.241213 GCTCCGAAAAAGCTTGTCCC 59.759 55.000 0.00 0.00 36.80 4.46
3827 5673 1.807142 CTCCGAAAAAGCTTGTCCCTC 59.193 52.381 0.00 0.00 0.00 4.30
3831 5677 3.005791 CCGAAAAAGCTTGTCCCTCAAAT 59.994 43.478 0.00 0.00 35.48 2.32
3832 5678 3.983344 CGAAAAAGCTTGTCCCTCAAATG 59.017 43.478 0.00 0.00 35.48 2.32
3836 5682 2.731572 AGCTTGTCCCTCAAATGGATG 58.268 47.619 0.00 0.00 35.48 3.51
3837 5683 2.042162 AGCTTGTCCCTCAAATGGATGT 59.958 45.455 0.00 0.00 35.48 3.06
3839 5685 4.079558 AGCTTGTCCCTCAAATGGATGTAT 60.080 41.667 0.00 0.00 35.48 2.29
3840 5686 4.276926 GCTTGTCCCTCAAATGGATGTATC 59.723 45.833 0.00 0.00 35.48 2.24
3841 5687 4.792068 TTGTCCCTCAAATGGATGTATCC 58.208 43.478 3.91 3.91 39.06 2.59
3856 5702 5.300034 GGATGTATCCATTTGATGAACAGCA 59.700 40.000 6.03 0.00 46.38 4.41
3857 5703 6.183360 GGATGTATCCATTTGATGAACAGCAA 60.183 38.462 6.03 1.31 46.38 3.91
3858 5704 6.778834 TGTATCCATTTGATGAACAGCAAT 57.221 33.333 6.33 0.00 36.53 3.56
3859 5705 6.798482 TGTATCCATTTGATGAACAGCAATC 58.202 36.000 6.33 0.00 36.53 2.67
3861 5707 5.319140 TCCATTTGATGAACAGCAATCAG 57.681 39.130 6.33 0.82 36.53 2.90
3883 5729 7.877003 TCAGCTAAGTTAGTGCTAGATACATC 58.123 38.462 11.51 0.00 35.05 3.06
3885 5731 6.778069 AGCTAAGTTAGTGCTAGATACATCCA 59.222 38.462 11.51 0.00 35.05 3.41
3889 5735 8.668510 AAGTTAGTGCTAGATACATCCATTTG 57.331 34.615 0.00 0.00 0.00 2.32
3890 5736 8.023021 AGTTAGTGCTAGATACATCCATTTGA 57.977 34.615 0.00 0.00 0.00 2.69
3891 5737 8.654997 AGTTAGTGCTAGATACATCCATTTGAT 58.345 33.333 0.00 0.00 0.00 2.57
3903 5749 4.524316 TCCATTTGATGAACAAGCTTGG 57.476 40.909 29.18 12.28 39.77 3.61
3911 5757 6.620139 TTGATGAACAAGCTTGGGACAAGTT 61.620 40.000 29.18 13.16 37.48 2.66
4009 5856 3.936585 CTCTCGCTTAGAGCACCTC 57.063 57.895 0.50 0.00 45.22 3.85
4010 5857 0.383949 CTCTCGCTTAGAGCACCTCC 59.616 60.000 0.50 0.00 45.22 4.30
4011 5858 1.064946 CTCGCTTAGAGCACCTCCG 59.935 63.158 0.50 0.00 42.58 4.63
4012 5859 2.105128 CGCTTAGAGCACCTCCGG 59.895 66.667 0.00 0.00 42.58 5.14
4013 5860 2.202946 GCTTAGAGCACCTCCGGC 60.203 66.667 0.00 0.00 41.89 6.13
4014 5861 2.501610 CTTAGAGCACCTCCGGCC 59.498 66.667 0.00 0.00 0.00 6.13
4015 5862 3.432051 CTTAGAGCACCTCCGGCCG 62.432 68.421 21.04 21.04 0.00 6.13
4016 5863 3.949885 TTAGAGCACCTCCGGCCGA 62.950 63.158 30.73 12.25 0.00 5.54
4034 5881 2.679996 CCCAGGGGGCCGAAAAAG 60.680 66.667 0.00 0.00 35.35 2.27
4035 5882 2.438795 CCAGGGGGCCGAAAAAGA 59.561 61.111 0.00 0.00 0.00 2.52
4036 5883 1.678970 CCAGGGGGCCGAAAAAGAG 60.679 63.158 0.00 0.00 0.00 2.85
4037 5884 2.035783 AGGGGGCCGAAAAAGAGC 59.964 61.111 0.00 0.00 0.00 4.09
4038 5885 3.068691 GGGGGCCGAAAAAGAGCC 61.069 66.667 0.00 0.00 46.37 4.70
4041 5888 4.116328 GGCCGAAAAAGAGCCGCC 62.116 66.667 0.00 0.00 36.84 6.13
4042 5889 3.056328 GCCGAAAAAGAGCCGCCT 61.056 61.111 0.00 0.00 0.00 5.52
4043 5890 2.870372 CCGAAAAAGAGCCGCCTG 59.130 61.111 0.00 0.00 0.00 4.85
4044 5891 2.690778 CCGAAAAAGAGCCGCCTGG 61.691 63.158 0.00 0.00 38.77 4.45
4045 5892 2.690778 CGAAAAAGAGCCGCCTGGG 61.691 63.158 0.00 0.00 39.58 4.45
4046 5893 2.283173 AAAAAGAGCCGCCTGGGG 60.283 61.111 3.33 3.33 35.78 4.96
4064 5911 3.030652 CCGAACAGGCGTTTGCTT 58.969 55.556 4.56 0.00 42.25 3.91
4074 5921 4.999939 GTTTGCTTGGCGCGTGGG 63.000 66.667 8.43 0.00 43.27 4.61
4095 5942 3.267900 CGATAGCGTTCCCAATCGT 57.732 52.632 0.00 0.00 37.15 3.73
4096 5943 1.129326 CGATAGCGTTCCCAATCGTC 58.871 55.000 0.00 0.00 37.15 4.20
4097 5944 1.129326 GATAGCGTTCCCAATCGTCG 58.871 55.000 0.00 0.00 0.00 5.12
4098 5945 0.874607 ATAGCGTTCCCAATCGTCGC 60.875 55.000 0.00 0.00 45.82 5.19
4099 5946 2.894240 TAGCGTTCCCAATCGTCGCC 62.894 60.000 0.00 0.00 46.49 5.54
4100 5947 3.192922 CGTTCCCAATCGTCGCCC 61.193 66.667 0.00 0.00 0.00 6.13
4101 5948 2.822701 GTTCCCAATCGTCGCCCC 60.823 66.667 0.00 0.00 0.00 5.80
4102 5949 4.104183 TTCCCAATCGTCGCCCCC 62.104 66.667 0.00 0.00 0.00 5.40
4104 5951 4.856801 CCCAATCGTCGCCCCCAG 62.857 72.222 0.00 0.00 0.00 4.45
4105 5952 4.856801 CCAATCGTCGCCCCCAGG 62.857 72.222 0.00 0.00 0.00 4.45
4106 5953 4.096003 CAATCGTCGCCCCCAGGT 62.096 66.667 0.00 0.00 34.57 4.00
4107 5954 3.782443 AATCGTCGCCCCCAGGTC 61.782 66.667 0.00 0.00 34.57 3.85
4118 5965 3.061848 CCAGGTCGCCGCCAAAAT 61.062 61.111 0.70 0.00 0.00 1.82
4119 5966 2.485122 CAGGTCGCCGCCAAAATC 59.515 61.111 0.70 0.00 0.00 2.17
4120 5967 3.124921 AGGTCGCCGCCAAAATCG 61.125 61.111 0.70 0.00 0.00 3.34
4121 5968 4.829518 GGTCGCCGCCAAAATCGC 62.830 66.667 0.00 0.00 0.00 4.58
4127 5974 2.762616 CGCCAAAATCGCGCAAAC 59.237 55.556 8.75 0.00 43.57 2.93
4128 5975 1.729131 CGCCAAAATCGCGCAAACT 60.729 52.632 8.75 0.00 43.57 2.66
4129 5976 1.664643 CGCCAAAATCGCGCAAACTC 61.665 55.000 8.75 0.00 43.57 3.01
4130 5977 1.664643 GCCAAAATCGCGCAAACTCG 61.665 55.000 8.75 0.00 0.00 4.18
4131 5978 1.065031 CCAAAATCGCGCAAACTCGG 61.065 55.000 8.75 0.00 0.00 4.63
4132 5979 1.442017 AAAATCGCGCAAACTCGGC 60.442 52.632 8.75 0.00 0.00 5.54
4142 5989 3.675467 GCAAACTCGGCGATCTTTTAT 57.325 42.857 11.27 0.00 0.00 1.40
4143 5990 4.789095 GCAAACTCGGCGATCTTTTATA 57.211 40.909 11.27 0.00 0.00 0.98
4144 5991 4.762809 GCAAACTCGGCGATCTTTTATAG 58.237 43.478 11.27 0.00 0.00 1.31
4145 5992 4.506654 GCAAACTCGGCGATCTTTTATAGA 59.493 41.667 11.27 0.00 37.28 1.98
4146 5993 5.006358 GCAAACTCGGCGATCTTTTATAGAA 59.994 40.000 11.27 0.00 36.22 2.10
4147 5994 6.456449 GCAAACTCGGCGATCTTTTATAGAAA 60.456 38.462 11.27 0.00 36.22 2.52
4148 5995 7.630924 CAAACTCGGCGATCTTTTATAGAAAT 58.369 34.615 11.27 0.00 36.22 2.17
4149 5996 7.787725 AACTCGGCGATCTTTTATAGAAATT 57.212 32.000 11.27 0.00 36.22 1.82
4150 5997 7.787725 ACTCGGCGATCTTTTATAGAAATTT 57.212 32.000 11.27 0.00 36.22 1.82
4151 5998 7.630924 ACTCGGCGATCTTTTATAGAAATTTG 58.369 34.615 11.27 0.00 36.22 2.32
4152 5999 7.280205 ACTCGGCGATCTTTTATAGAAATTTGT 59.720 33.333 11.27 0.00 36.22 2.83
4153 6000 8.651391 TCGGCGATCTTTTATAGAAATTTGTA 57.349 30.769 4.99 0.00 36.22 2.41
4154 6001 8.545420 TCGGCGATCTTTTATAGAAATTTGTAC 58.455 33.333 4.99 0.00 36.22 2.90
4155 6002 8.332464 CGGCGATCTTTTATAGAAATTTGTACA 58.668 33.333 0.00 0.00 36.22 2.90
4156 6003 9.997482 GGCGATCTTTTATAGAAATTTGTACAA 57.003 29.630 3.59 3.59 36.22 2.41
4163 6010 9.615295 TTTTATAGAAATTTGTACAAACTCGGC 57.385 29.630 22.78 10.85 32.51 5.54
4164 6011 6.811253 ATAGAAATTTGTACAAACTCGGCA 57.189 33.333 22.78 12.69 32.51 5.69
4165 6012 5.508200 AGAAATTTGTACAAACTCGGCAA 57.492 34.783 22.78 0.00 32.51 4.52
4166 6013 6.084326 AGAAATTTGTACAAACTCGGCAAT 57.916 33.333 22.78 2.12 32.51 3.56
4167 6014 7.209471 AGAAATTTGTACAAACTCGGCAATA 57.791 32.000 22.78 0.00 32.51 1.90
4168 6015 7.826690 AGAAATTTGTACAAACTCGGCAATAT 58.173 30.769 22.78 0.63 32.51 1.28
4169 6016 8.303876 AGAAATTTGTACAAACTCGGCAATATT 58.696 29.630 22.78 6.89 32.51 1.28
4170 6017 8.825667 AAATTTGTACAAACTCGGCAATATTT 57.174 26.923 22.78 12.15 32.51 1.40
4171 6018 8.460831 AATTTGTACAAACTCGGCAATATTTC 57.539 30.769 22.78 0.00 32.51 2.17
4172 6019 6.561737 TTGTACAAACTCGGCAATATTTCA 57.438 33.333 5.64 0.00 0.00 2.69
4173 6020 6.751514 TGTACAAACTCGGCAATATTTCAT 57.248 33.333 0.00 0.00 0.00 2.57
4174 6021 7.851387 TGTACAAACTCGGCAATATTTCATA 57.149 32.000 0.00 0.00 0.00 2.15
4175 6022 7.915508 TGTACAAACTCGGCAATATTTCATAG 58.084 34.615 0.00 0.00 0.00 2.23
4176 6023 7.766738 TGTACAAACTCGGCAATATTTCATAGA 59.233 33.333 0.00 0.00 0.00 1.98
4177 6024 7.624360 ACAAACTCGGCAATATTTCATAGAA 57.376 32.000 0.00 0.00 0.00 2.10
4178 6025 8.050778 ACAAACTCGGCAATATTTCATAGAAA 57.949 30.769 0.00 0.00 0.00 2.52
4179 6026 8.686334 ACAAACTCGGCAATATTTCATAGAAAT 58.314 29.630 9.61 9.61 0.00 2.17
4180 6027 9.520204 CAAACTCGGCAATATTTCATAGAAATT 57.480 29.630 9.92 0.00 0.00 1.82
4182 6029 9.520204 AACTCGGCAATATTTCATAGAAATTTG 57.480 29.630 9.92 13.27 0.00 2.32
4183 6030 8.686334 ACTCGGCAATATTTCATAGAAATTTGT 58.314 29.630 9.92 0.00 0.00 2.83
4185 6032 9.944663 TCGGCAATATTTCATAGAAATTTGTAC 57.055 29.630 9.92 9.98 0.00 2.90
4186 6033 9.729023 CGGCAATATTTCATAGAAATTTGTACA 57.271 29.630 9.92 0.00 0.00 2.90
4204 6051 9.926158 ATTTGTACAAAATCAGATAAACATGCA 57.074 25.926 23.97 0.00 33.56 3.96
4205 6052 9.755804 TTTGTACAAAATCAGATAAACATGCAA 57.244 25.926 18.54 0.00 0.00 4.08
4206 6053 9.755804 TTGTACAAAATCAGATAAACATGCAAA 57.244 25.926 5.64 0.00 0.00 3.68
4207 6054 9.190858 TGTACAAAATCAGATAAACATGCAAAC 57.809 29.630 0.00 0.00 0.00 2.93
4208 6055 9.410556 GTACAAAATCAGATAAACATGCAAACT 57.589 29.630 0.00 0.00 0.00 2.66
4210 6057 9.410556 ACAAAATCAGATAAACATGCAAACTAC 57.589 29.630 0.00 0.00 0.00 2.73
4211 6058 8.577939 CAAAATCAGATAAACATGCAAACTACG 58.422 33.333 0.00 0.00 0.00 3.51
4212 6059 5.216566 TCAGATAAACATGCAAACTACGC 57.783 39.130 0.00 0.00 0.00 4.42
4213 6060 4.094294 TCAGATAAACATGCAAACTACGCC 59.906 41.667 0.00 0.00 0.00 5.68
4214 6061 4.094887 CAGATAAACATGCAAACTACGCCT 59.905 41.667 0.00 0.00 0.00 5.52
4215 6062 5.293324 CAGATAAACATGCAAACTACGCCTA 59.707 40.000 0.00 0.00 0.00 3.93
4216 6063 5.523916 AGATAAACATGCAAACTACGCCTAG 59.476 40.000 0.00 0.00 0.00 3.02
4217 6064 3.328382 AACATGCAAACTACGCCTAGA 57.672 42.857 0.00 0.00 0.00 2.43
4218 6065 3.328382 ACATGCAAACTACGCCTAGAA 57.672 42.857 0.00 0.00 0.00 2.10
4219 6066 3.000727 ACATGCAAACTACGCCTAGAAC 58.999 45.455 0.00 0.00 0.00 3.01
4220 6067 3.262420 CATGCAAACTACGCCTAGAACT 58.738 45.455 0.00 0.00 0.00 3.01
4221 6068 4.081862 ACATGCAAACTACGCCTAGAACTA 60.082 41.667 0.00 0.00 0.00 2.24
4222 6069 4.730949 TGCAAACTACGCCTAGAACTAT 57.269 40.909 0.00 0.00 0.00 2.12
4223 6070 4.430007 TGCAAACTACGCCTAGAACTATG 58.570 43.478 0.00 0.00 0.00 2.23
4224 6071 3.245519 GCAAACTACGCCTAGAACTATGC 59.754 47.826 0.00 0.00 0.00 3.14
4225 6072 3.729862 AACTACGCCTAGAACTATGCC 57.270 47.619 0.00 0.00 0.00 4.40
4226 6073 2.946785 ACTACGCCTAGAACTATGCCT 58.053 47.619 0.00 0.00 0.00 4.75
4227 6074 4.096190 ACTACGCCTAGAACTATGCCTA 57.904 45.455 0.00 0.00 0.00 3.93
4228 6075 3.819902 ACTACGCCTAGAACTATGCCTAC 59.180 47.826 0.00 0.00 0.00 3.18
4229 6076 1.607628 ACGCCTAGAACTATGCCTACG 59.392 52.381 0.00 0.00 0.00 3.51
4230 6077 1.666311 CGCCTAGAACTATGCCTACGC 60.666 57.143 0.00 0.00 0.00 4.42
4231 6078 1.336980 GCCTAGAACTATGCCTACGCC 60.337 57.143 0.00 0.00 0.00 5.68
4232 6079 1.068472 CCTAGAACTATGCCTACGCCG 60.068 57.143 0.00 0.00 0.00 6.46
4233 6080 0.313043 TAGAACTATGCCTACGCCGC 59.687 55.000 0.00 0.00 0.00 6.53
4234 6081 2.279252 AACTATGCCTACGCCGCG 60.279 61.111 12.14 12.14 0.00 6.46
4235 6082 3.785189 AACTATGCCTACGCCGCGG 62.785 63.158 24.05 24.05 0.00 6.46
4252 6099 3.818787 GCCGTCGTCCGCCTTCTA 61.819 66.667 0.00 0.00 34.38 2.10
4253 6100 2.101770 CCGTCGTCCGCCTTCTAC 59.898 66.667 0.00 0.00 34.38 2.59
4254 6101 2.693762 CCGTCGTCCGCCTTCTACA 61.694 63.158 0.00 0.00 34.38 2.74
4255 6102 1.432251 CGTCGTCCGCCTTCTACAT 59.568 57.895 0.00 0.00 0.00 2.29
4256 6103 0.866061 CGTCGTCCGCCTTCTACATG 60.866 60.000 0.00 0.00 0.00 3.21
4257 6104 1.141019 TCGTCCGCCTTCTACATGC 59.859 57.895 0.00 0.00 0.00 4.06
4258 6105 1.883084 CGTCCGCCTTCTACATGCC 60.883 63.158 0.00 0.00 0.00 4.40
4259 6106 1.883084 GTCCGCCTTCTACATGCCG 60.883 63.158 0.00 0.00 0.00 5.69
4260 6107 2.055633 TCCGCCTTCTACATGCCGA 61.056 57.895 0.00 0.00 0.00 5.54
4261 6108 1.592669 CCGCCTTCTACATGCCGAG 60.593 63.158 0.00 0.00 0.00 4.63
4262 6109 1.592669 CGCCTTCTACATGCCGAGG 60.593 63.158 0.00 0.00 0.00 4.63
4263 6110 1.823295 GCCTTCTACATGCCGAGGA 59.177 57.895 8.67 0.00 0.00 3.71
4264 6111 0.249657 GCCTTCTACATGCCGAGGAG 60.250 60.000 8.67 1.21 0.00 3.69
4265 6112 0.249657 CCTTCTACATGCCGAGGAGC 60.250 60.000 0.00 0.00 0.00 4.70
4266 6113 0.249657 CTTCTACATGCCGAGGAGCC 60.250 60.000 0.00 0.00 0.00 4.70
4267 6114 0.687757 TTCTACATGCCGAGGAGCCT 60.688 55.000 0.00 0.00 0.00 4.58
4268 6115 1.068753 CTACATGCCGAGGAGCCTG 59.931 63.158 0.00 0.00 34.88 4.85
4269 6116 1.680522 CTACATGCCGAGGAGCCTGT 61.681 60.000 0.00 0.39 43.00 4.00
4270 6117 0.396556 TACATGCCGAGGAGCCTGTA 60.397 55.000 0.00 0.00 41.17 2.74
4271 6118 1.068753 CATGCCGAGGAGCCTGTAG 59.931 63.158 0.00 0.00 0.00 2.74
4272 6119 1.075970 ATGCCGAGGAGCCTGTAGA 60.076 57.895 0.00 0.00 0.00 2.59
4273 6120 0.687757 ATGCCGAGGAGCCTGTAGAA 60.688 55.000 0.00 0.00 0.00 2.10
4274 6121 0.902984 TGCCGAGGAGCCTGTAGAAA 60.903 55.000 0.00 0.00 0.00 2.52
4275 6122 0.460459 GCCGAGGAGCCTGTAGAAAC 60.460 60.000 0.00 0.00 0.00 2.78
4276 6123 0.179134 CCGAGGAGCCTGTAGAAACG 60.179 60.000 0.00 0.00 0.00 3.60
4277 6124 0.179134 CGAGGAGCCTGTAGAAACGG 60.179 60.000 0.00 0.00 0.00 4.44
4285 6132 3.227810 CCTGTAGAAACGGGTGTAGTC 57.772 52.381 0.00 0.00 45.83 2.59
4286 6133 2.415090 CCTGTAGAAACGGGTGTAGTCG 60.415 54.545 0.00 0.00 45.83 4.18
4287 6134 2.227388 CTGTAGAAACGGGTGTAGTCGT 59.773 50.000 0.00 0.00 41.71 4.34
4288 6135 2.226437 TGTAGAAACGGGTGTAGTCGTC 59.774 50.000 0.00 0.00 38.78 4.20
4289 6136 0.239347 AGAAACGGGTGTAGTCGTCG 59.761 55.000 0.00 0.00 38.78 5.12
4290 6137 0.040067 GAAACGGGTGTAGTCGTCGT 60.040 55.000 0.00 0.00 38.78 4.34
4291 6138 0.040067 AAACGGGTGTAGTCGTCGTC 60.040 55.000 0.00 0.00 38.78 4.20
4292 6139 2.097160 CGGGTGTAGTCGTCGTCG 59.903 66.667 0.00 0.00 38.55 5.12
4293 6140 2.202401 GGGTGTAGTCGTCGTCGC 60.202 66.667 0.00 0.00 36.96 5.19
4294 6141 2.572647 GGTGTAGTCGTCGTCGCG 60.573 66.667 0.00 0.00 36.96 5.87
4295 6142 3.229184 GTGTAGTCGTCGTCGCGC 61.229 66.667 0.00 0.00 36.96 6.86
4296 6143 4.782116 TGTAGTCGTCGTCGCGCG 62.782 66.667 26.76 26.76 43.01 6.86
4328 6175 4.814294 CCGCCGTCCCTACTGCAC 62.814 72.222 0.00 0.00 35.74 4.57
4329 6176 4.814294 CGCCGTCCCTACTGCACC 62.814 72.222 0.00 0.00 35.74 5.01
4330 6177 4.468689 GCCGTCCCTACTGCACCC 62.469 72.222 0.00 0.00 36.02 4.61
4331 6178 3.782443 CCGTCCCTACTGCACCCC 61.782 72.222 0.00 0.00 0.00 4.95
4332 6179 2.683933 CGTCCCTACTGCACCCCT 60.684 66.667 0.00 0.00 0.00 4.79
4333 6180 2.990479 GTCCCTACTGCACCCCTG 59.010 66.667 0.00 0.00 0.00 4.45
4334 6181 2.285368 TCCCTACTGCACCCCTGG 60.285 66.667 0.00 0.00 0.00 4.45
4335 6182 4.115199 CCCTACTGCACCCCTGGC 62.115 72.222 0.00 0.00 0.00 4.85
4336 6183 4.115199 CCTACTGCACCCCTGGCC 62.115 72.222 0.00 0.00 0.00 5.36
4337 6184 3.329889 CTACTGCACCCCTGGCCA 61.330 66.667 4.71 4.71 0.00 5.36
4338 6185 3.329889 TACTGCACCCCTGGCCAG 61.330 66.667 26.87 26.87 33.47 4.85
4400 6247 3.519930 GGCCTCGTCCTCCTCGTC 61.520 72.222 0.00 0.00 0.00 4.20
4401 6248 3.878519 GCCTCGTCCTCCTCGTCG 61.879 72.222 0.00 0.00 0.00 5.12
4402 6249 3.878519 CCTCGTCCTCCTCGTCGC 61.879 72.222 0.00 0.00 0.00 5.19
4403 6250 2.820479 CTCGTCCTCCTCGTCGCT 60.820 66.667 0.00 0.00 0.00 4.93
4404 6251 3.102107 CTCGTCCTCCTCGTCGCTG 62.102 68.421 0.00 0.00 0.00 5.18
4405 6252 3.432588 CGTCCTCCTCGTCGCTGT 61.433 66.667 0.00 0.00 0.00 4.40
4406 6253 2.486042 GTCCTCCTCGTCGCTGTC 59.514 66.667 0.00 0.00 0.00 3.51
4407 6254 3.125573 TCCTCCTCGTCGCTGTCG 61.126 66.667 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 1.609501 CCGGAACCCTCTCTCCACA 60.610 63.158 0.00 0.00 0.00 4.17
130 142 7.333423 TGATCTTACAAAGCCAGTAACATACAC 59.667 37.037 0.00 0.00 0.00 2.90
131 143 7.390823 TGATCTTACAAAGCCAGTAACATACA 58.609 34.615 0.00 0.00 0.00 2.29
266 347 6.677781 TTGTTCCTCACAAACAGTCTAAAG 57.322 37.500 0.00 0.00 42.76 1.85
308 390 5.547465 TGGTACACTCCAGAAACATGTAAG 58.453 41.667 0.00 0.00 33.19 2.34
349 431 1.348036 ACTCTAACAGGGCAGTCAACC 59.652 52.381 0.00 0.00 0.00 3.77
398 480 0.187117 TCACCAGGGCAACAAATCCA 59.813 50.000 0.00 0.00 39.74 3.41
399 481 1.560505 ATCACCAGGGCAACAAATCC 58.439 50.000 0.00 0.00 39.74 3.01
459 544 5.867716 GTGGGTCATAGTATATTTACCAGCG 59.132 44.000 0.00 0.00 0.00 5.18
486 571 1.884926 GAGCACATAGAGGCGTGGC 60.885 63.158 0.00 0.00 33.62 5.01
988 1116 4.558226 TTCTGAGCATCCAAGCTTTCTA 57.442 40.909 0.00 0.00 46.75 2.10
1021 1149 3.284617 CCTCATCATGTTCATGCTTCCA 58.715 45.455 7.80 0.00 0.00 3.53
1108 1236 1.463674 AGAAAGCAGCGGTTATTGGG 58.536 50.000 0.00 0.00 0.00 4.12
1245 1376 3.055240 CAGGTCCAGCTTCAGAGAAGAAT 60.055 47.826 10.72 0.00 0.00 2.40
1804 1935 3.419943 TCAGTTTCATTGGCAGTGCATA 58.580 40.909 18.61 3.94 0.00 3.14
1938 2069 1.559682 GGAACCCATTCAGGTGAGCTA 59.440 52.381 0.00 0.00 40.05 3.32
2068 2199 7.604164 AGATTCCAGTTTATACAACACACTGAG 59.396 37.037 0.00 0.00 37.63 3.35
2116 2247 4.252073 GCTCTATCCATGGCTTCATACAG 58.748 47.826 6.96 0.00 0.00 2.74
2202 2333 7.311046 GGACTATGCAAGTAACCATCCCATATA 60.311 40.741 0.00 0.00 39.07 0.86
2313 2444 1.346395 AGTTGGATTGTACAGGTCGCA 59.654 47.619 0.00 0.00 0.00 5.10
2317 2448 1.271926 GCCCAGTTGGATTGTACAGGT 60.272 52.381 0.00 0.00 37.39 4.00
2373 2504 6.918022 CCAACTTCTTTTCATACACTTCCAAC 59.082 38.462 0.00 0.00 0.00 3.77
3008 3274 7.648112 GTGAACTGATGAATGAAATGATGATGG 59.352 37.037 0.00 0.00 0.00 3.51
3014 3280 7.690952 TGATGTGAACTGATGAATGAAATGA 57.309 32.000 0.00 0.00 0.00 2.57
3044 3310 9.961265 CGTGGTAAGAAGATAGTAATTCATGTA 57.039 33.333 0.00 0.00 0.00 2.29
3079 3346 3.181477 CCACCACTGAACTGCAATTTCAA 60.181 43.478 10.73 0.00 32.61 2.69
3080 3347 2.361757 CCACCACTGAACTGCAATTTCA 59.638 45.455 9.47 9.47 0.00 2.69
3081 3348 2.362077 ACCACCACTGAACTGCAATTTC 59.638 45.455 1.47 1.47 0.00 2.17
3082 3349 2.362077 GACCACCACTGAACTGCAATTT 59.638 45.455 0.00 0.00 0.00 1.82
3083 3350 1.956477 GACCACCACTGAACTGCAATT 59.044 47.619 0.00 0.00 0.00 2.32
3095 3363 3.118454 CCATGCGTCGACCACCAC 61.118 66.667 10.58 0.00 0.00 4.16
3407 3680 1.115930 ACTGAAGGCCGTCACTCAGT 61.116 55.000 18.10 17.23 34.12 3.41
3408 3681 0.034059 AACTGAAGGCCGTCACTCAG 59.966 55.000 18.10 16.63 0.00 3.35
3409 3682 0.249868 CAACTGAAGGCCGTCACTCA 60.250 55.000 18.10 5.87 0.00 3.41
3410 3683 0.033504 TCAACTGAAGGCCGTCACTC 59.966 55.000 18.10 1.14 0.00 3.51
3461 4848 1.808343 ACAGCAGCATACACACACATG 59.192 47.619 0.00 0.00 0.00 3.21
3816 5662 2.042162 ACATCCATTTGAGGGACAAGCT 59.958 45.455 0.00 0.00 39.77 3.74
3836 5682 6.798482 TGATTGCTGTTCATCAAATGGATAC 58.202 36.000 0.00 0.00 33.95 2.24
3837 5683 6.460537 GCTGATTGCTGTTCATCAAATGGATA 60.461 38.462 0.00 0.00 38.95 2.59
3839 5685 4.381185 GCTGATTGCTGTTCATCAAATGGA 60.381 41.667 0.00 0.00 38.95 3.41
3840 5686 3.863424 GCTGATTGCTGTTCATCAAATGG 59.137 43.478 0.00 0.00 38.95 3.16
3854 5700 5.352284 TCTAGCACTAACTTAGCTGATTGC 58.648 41.667 0.00 0.00 39.30 3.56
3856 5702 8.239038 TGTATCTAGCACTAACTTAGCTGATT 57.761 34.615 0.00 0.00 39.30 2.57
3857 5703 7.825331 TGTATCTAGCACTAACTTAGCTGAT 57.175 36.000 0.00 0.00 39.30 2.90
3858 5704 7.040340 GGATGTATCTAGCACTAACTTAGCTGA 60.040 40.741 0.00 0.00 39.30 4.26
3859 5705 7.087639 GGATGTATCTAGCACTAACTTAGCTG 58.912 42.308 0.00 0.00 39.30 4.24
3861 5707 6.982852 TGGATGTATCTAGCACTAACTTAGC 58.017 40.000 0.00 0.00 0.00 3.09
3866 5712 8.715998 CATCAAATGGATGTATCTAGCACTAAC 58.284 37.037 0.00 0.00 46.81 2.34
3883 5729 3.258872 TCCCAAGCTTGTTCATCAAATGG 59.741 43.478 24.35 14.01 35.48 3.16
3885 5731 3.896888 TGTCCCAAGCTTGTTCATCAAAT 59.103 39.130 24.35 0.00 35.48 2.32
3889 5735 2.887152 ACTTGTCCCAAGCTTGTTCATC 59.113 45.455 24.35 10.65 0.00 2.92
3890 5736 2.949447 ACTTGTCCCAAGCTTGTTCAT 58.051 42.857 24.35 4.76 0.00 2.57
3891 5737 2.435372 ACTTGTCCCAAGCTTGTTCA 57.565 45.000 24.35 16.37 0.00 3.18
3892 5738 3.801114 AAACTTGTCCCAAGCTTGTTC 57.199 42.857 24.35 14.17 0.00 3.18
3893 5739 4.551702 AAAAACTTGTCCCAAGCTTGTT 57.448 36.364 24.35 7.97 0.00 2.83
3911 5757 1.273327 GTACTCCCTCCGTCCGAAAAA 59.727 52.381 0.00 0.00 0.00 1.94
4015 5862 3.516949 TTTTTCGGCCCCCTGGGTC 62.517 63.158 12.71 2.67 46.51 4.46
4016 5863 3.513566 TTTTTCGGCCCCCTGGGT 61.514 61.111 12.71 0.00 46.51 4.51
4018 5865 1.678970 CTCTTTTTCGGCCCCCTGG 60.679 63.158 0.00 0.00 0.00 4.45
4019 5866 2.343426 GCTCTTTTTCGGCCCCCTG 61.343 63.158 0.00 0.00 0.00 4.45
4020 5867 2.035783 GCTCTTTTTCGGCCCCCT 59.964 61.111 0.00 0.00 0.00 4.79
4021 5868 3.068691 GGCTCTTTTTCGGCCCCC 61.069 66.667 0.00 0.00 39.96 5.40
4022 5869 3.440415 CGGCTCTTTTTCGGCCCC 61.440 66.667 0.00 0.00 42.58 5.80
4023 5870 4.116328 GCGGCTCTTTTTCGGCCC 62.116 66.667 0.00 0.00 42.58 5.80
4024 5871 4.116328 GGCGGCTCTTTTTCGGCC 62.116 66.667 0.00 0.00 42.38 6.13
4026 5873 2.690778 CCAGGCGGCTCTTTTTCGG 61.691 63.158 9.32 0.76 0.00 4.30
4027 5874 2.690778 CCCAGGCGGCTCTTTTTCG 61.691 63.158 9.32 0.00 0.00 3.46
4028 5875 2.343426 CCCCAGGCGGCTCTTTTTC 61.343 63.158 9.32 0.00 0.00 2.29
4029 5876 2.283173 CCCCAGGCGGCTCTTTTT 60.283 61.111 9.32 0.00 0.00 1.94
4047 5894 1.370414 CAAGCAAACGCCTGTTCGG 60.370 57.895 0.00 0.00 37.31 4.30
4048 5895 1.370414 CCAAGCAAACGCCTGTTCG 60.370 57.895 0.00 0.00 37.31 3.95
4049 5896 1.661509 GCCAAGCAAACGCCTGTTC 60.662 57.895 0.00 0.00 37.31 3.18
4050 5897 2.417097 GCCAAGCAAACGCCTGTT 59.583 55.556 0.00 0.00 40.98 3.16
4051 5898 3.964875 CGCCAAGCAAACGCCTGT 61.965 61.111 0.00 0.00 0.00 4.00
4069 5916 4.524318 AACGCTATCGCCCCCACG 62.524 66.667 0.00 0.00 39.84 4.94
4070 5917 2.588034 GAACGCTATCGCCCCCAC 60.588 66.667 0.00 0.00 39.84 4.61
4071 5918 3.857038 GGAACGCTATCGCCCCCA 61.857 66.667 0.00 0.00 39.84 4.96
4072 5919 4.620937 GGGAACGCTATCGCCCCC 62.621 72.222 5.91 3.67 42.47 5.40
4073 5920 2.676163 ATTGGGAACGCTATCGCCCC 62.676 60.000 9.36 9.36 45.98 5.80
4074 5921 1.227853 ATTGGGAACGCTATCGCCC 60.228 57.895 0.00 0.00 38.16 6.13
4075 5922 1.557443 CGATTGGGAACGCTATCGCC 61.557 60.000 17.75 0.00 39.84 5.54
4076 5923 0.874607 ACGATTGGGAACGCTATCGC 60.875 55.000 24.79 0.34 42.56 4.58
4077 5924 1.129326 GACGATTGGGAACGCTATCG 58.871 55.000 23.89 23.89 43.92 2.92
4078 5925 1.129326 CGACGATTGGGAACGCTATC 58.871 55.000 0.00 0.00 0.00 2.08
4079 5926 0.874607 GCGACGATTGGGAACGCTAT 60.875 55.000 0.00 0.00 44.67 2.97
4080 5927 1.517694 GCGACGATTGGGAACGCTA 60.518 57.895 0.00 0.00 44.67 4.26
4081 5928 2.813908 GCGACGATTGGGAACGCT 60.814 61.111 0.00 0.00 44.67 5.07
4082 5929 3.861263 GGCGACGATTGGGAACGC 61.861 66.667 0.00 0.00 46.79 4.84
4083 5930 3.192922 GGGCGACGATTGGGAACG 61.193 66.667 0.00 0.00 0.00 3.95
4084 5931 2.822701 GGGGCGACGATTGGGAAC 60.823 66.667 0.00 0.00 0.00 3.62
4085 5932 4.104183 GGGGGCGACGATTGGGAA 62.104 66.667 0.00 0.00 0.00 3.97
4087 5934 4.856801 CTGGGGGCGACGATTGGG 62.857 72.222 0.00 0.00 0.00 4.12
4088 5935 4.856801 CCTGGGGGCGACGATTGG 62.857 72.222 0.00 0.00 0.00 3.16
4089 5936 4.096003 ACCTGGGGGCGACGATTG 62.096 66.667 0.00 0.00 35.63 2.67
4090 5937 3.782443 GACCTGGGGGCGACGATT 61.782 66.667 0.00 0.00 35.63 3.34
4101 5948 3.051392 GATTTTGGCGGCGACCTGG 62.051 63.158 11.74 0.00 0.00 4.45
4102 5949 2.485122 GATTTTGGCGGCGACCTG 59.515 61.111 11.74 0.00 0.00 4.00
4103 5950 3.124921 CGATTTTGGCGGCGACCT 61.125 61.111 11.74 0.00 0.00 3.85
4104 5951 4.829518 GCGATTTTGGCGGCGACC 62.830 66.667 11.74 12.18 0.00 4.79
4111 5958 1.664643 CGAGTTTGCGCGATTTTGGC 61.665 55.000 12.10 0.00 40.32 4.52
4112 5959 1.065031 CCGAGTTTGCGCGATTTTGG 61.065 55.000 12.10 1.67 40.32 3.28
4113 5960 1.664643 GCCGAGTTTGCGCGATTTTG 61.665 55.000 12.10 0.00 40.32 2.44
4114 5961 1.442017 GCCGAGTTTGCGCGATTTT 60.442 52.632 12.10 0.00 40.32 1.82
4115 5962 2.175811 GCCGAGTTTGCGCGATTT 59.824 55.556 12.10 0.00 40.32 2.17
4116 5963 4.147322 CGCCGAGTTTGCGCGATT 62.147 61.111 12.10 0.00 46.01 3.34
4122 5969 3.675467 ATAAAAGATCGCCGAGTTTGC 57.325 42.857 0.00 0.00 0.00 3.68
4123 5970 6.583912 TTCTATAAAAGATCGCCGAGTTTG 57.416 37.500 0.00 0.00 33.05 2.93
4124 5971 7.787725 ATTTCTATAAAAGATCGCCGAGTTT 57.212 32.000 0.00 0.00 33.05 2.66
4125 5972 7.787725 AATTTCTATAAAAGATCGCCGAGTT 57.212 32.000 0.00 0.00 33.05 3.01
4126 5973 7.280205 ACAAATTTCTATAAAAGATCGCCGAGT 59.720 33.333 0.00 0.00 33.05 4.18
4127 5974 7.630924 ACAAATTTCTATAAAAGATCGCCGAG 58.369 34.615 0.00 0.00 33.05 4.63
4128 5975 7.548196 ACAAATTTCTATAAAAGATCGCCGA 57.452 32.000 0.00 0.00 33.05 5.54
4129 5976 8.332464 TGTACAAATTTCTATAAAAGATCGCCG 58.668 33.333 0.00 0.00 33.05 6.46
4130 5977 9.997482 TTGTACAAATTTCTATAAAAGATCGCC 57.003 29.630 5.64 0.00 33.05 5.54
4137 5984 9.615295 GCCGAGTTTGTACAAATTTCTATAAAA 57.385 29.630 23.11 0.00 32.36 1.52
4138 5985 8.784994 TGCCGAGTTTGTACAAATTTCTATAAA 58.215 29.630 23.11 3.02 32.36 1.40
4139 5986 8.325421 TGCCGAGTTTGTACAAATTTCTATAA 57.675 30.769 23.11 8.16 32.36 0.98
4140 5987 7.908827 TGCCGAGTTTGTACAAATTTCTATA 57.091 32.000 23.11 10.07 32.36 1.31
4141 5988 6.811253 TGCCGAGTTTGTACAAATTTCTAT 57.189 33.333 23.11 6.58 32.36 1.98
4142 5989 6.621316 TTGCCGAGTTTGTACAAATTTCTA 57.379 33.333 23.11 10.62 32.36 2.10
4143 5990 5.508200 TTGCCGAGTTTGTACAAATTTCT 57.492 34.783 23.11 15.65 32.36 2.52
4144 5991 8.460831 AATATTGCCGAGTTTGTACAAATTTC 57.539 30.769 23.11 20.39 32.36 2.17
4145 5992 8.825667 AAATATTGCCGAGTTTGTACAAATTT 57.174 26.923 23.11 14.80 32.36 1.82
4146 5993 8.085296 TGAAATATTGCCGAGTTTGTACAAATT 58.915 29.630 23.11 19.25 32.36 1.82
4147 5994 7.598278 TGAAATATTGCCGAGTTTGTACAAAT 58.402 30.769 23.11 12.56 32.36 2.32
4148 5995 6.971602 TGAAATATTGCCGAGTTTGTACAAA 58.028 32.000 17.01 17.01 0.00 2.83
4149 5996 6.561737 TGAAATATTGCCGAGTTTGTACAA 57.438 33.333 3.59 3.59 0.00 2.41
4150 5997 6.751514 ATGAAATATTGCCGAGTTTGTACA 57.248 33.333 0.00 0.00 0.00 2.90
4151 5998 8.138365 TCTATGAAATATTGCCGAGTTTGTAC 57.862 34.615 0.00 0.00 0.00 2.90
4152 5999 8.725405 TTCTATGAAATATTGCCGAGTTTGTA 57.275 30.769 0.00 0.00 0.00 2.41
4153 6000 7.624360 TTCTATGAAATATTGCCGAGTTTGT 57.376 32.000 0.00 0.00 0.00 2.83
4154 6001 9.520204 AATTTCTATGAAATATTGCCGAGTTTG 57.480 29.630 6.04 0.00 0.00 2.93
4156 6003 9.520204 CAAATTTCTATGAAATATTGCCGAGTT 57.480 29.630 6.04 0.00 0.00 3.01
4157 6004 8.686334 ACAAATTTCTATGAAATATTGCCGAGT 58.314 29.630 17.32 0.00 0.00 4.18
4159 6006 9.944663 GTACAAATTTCTATGAAATATTGCCGA 57.055 29.630 17.32 8.70 0.00 5.54
4160 6007 9.729023 TGTACAAATTTCTATGAAATATTGCCG 57.271 29.630 17.32 0.00 0.00 5.69
4178 6025 9.926158 TGCATGTTTATCTGATTTTGTACAAAT 57.074 25.926 21.17 11.57 0.00 2.32
4179 6026 9.755804 TTGCATGTTTATCTGATTTTGTACAAA 57.244 25.926 17.01 17.01 0.00 2.83
4180 6027 9.755804 TTTGCATGTTTATCTGATTTTGTACAA 57.244 25.926 3.59 3.59 0.00 2.41
4181 6028 9.190858 GTTTGCATGTTTATCTGATTTTGTACA 57.809 29.630 0.00 0.00 0.00 2.90
4182 6029 9.410556 AGTTTGCATGTTTATCTGATTTTGTAC 57.589 29.630 0.00 0.00 0.00 2.90
4184 6031 9.410556 GTAGTTTGCATGTTTATCTGATTTTGT 57.589 29.630 0.00 0.00 0.00 2.83
4185 6032 8.577939 CGTAGTTTGCATGTTTATCTGATTTTG 58.422 33.333 0.00 0.00 0.00 2.44
4186 6033 7.273381 GCGTAGTTTGCATGTTTATCTGATTTT 59.727 33.333 0.00 0.00 0.00 1.82
4187 6034 6.747280 GCGTAGTTTGCATGTTTATCTGATTT 59.253 34.615 0.00 0.00 0.00 2.17
4188 6035 6.258160 GCGTAGTTTGCATGTTTATCTGATT 58.742 36.000 0.00 0.00 0.00 2.57
4189 6036 5.220854 GGCGTAGTTTGCATGTTTATCTGAT 60.221 40.000 0.00 0.00 0.00 2.90
4190 6037 4.094294 GGCGTAGTTTGCATGTTTATCTGA 59.906 41.667 0.00 0.00 0.00 3.27
4191 6038 4.094887 AGGCGTAGTTTGCATGTTTATCTG 59.905 41.667 0.00 0.00 0.00 2.90
4192 6039 4.261801 AGGCGTAGTTTGCATGTTTATCT 58.738 39.130 0.00 0.00 0.00 1.98
4193 6040 4.616181 AGGCGTAGTTTGCATGTTTATC 57.384 40.909 0.00 0.00 0.00 1.75
4194 6041 5.424757 TCTAGGCGTAGTTTGCATGTTTAT 58.575 37.500 12.88 0.00 0.00 1.40
4195 6042 4.823157 TCTAGGCGTAGTTTGCATGTTTA 58.177 39.130 12.88 0.00 0.00 2.01
4196 6043 3.670625 TCTAGGCGTAGTTTGCATGTTT 58.329 40.909 12.88 0.00 0.00 2.83
4197 6044 3.328382 TCTAGGCGTAGTTTGCATGTT 57.672 42.857 12.88 0.00 0.00 2.71
4198 6045 3.000727 GTTCTAGGCGTAGTTTGCATGT 58.999 45.455 12.88 0.00 0.00 3.21
4199 6046 3.262420 AGTTCTAGGCGTAGTTTGCATG 58.738 45.455 12.88 0.00 0.00 4.06
4200 6047 3.611766 AGTTCTAGGCGTAGTTTGCAT 57.388 42.857 12.88 0.00 0.00 3.96
4201 6048 4.430007 CATAGTTCTAGGCGTAGTTTGCA 58.570 43.478 12.88 0.00 0.00 4.08
4202 6049 3.245519 GCATAGTTCTAGGCGTAGTTTGC 59.754 47.826 12.88 11.42 0.00 3.68
4203 6050 3.802685 GGCATAGTTCTAGGCGTAGTTTG 59.197 47.826 12.88 6.45 0.00 2.93
4204 6051 3.705072 AGGCATAGTTCTAGGCGTAGTTT 59.295 43.478 12.88 3.50 0.00 2.66
4205 6052 3.297736 AGGCATAGTTCTAGGCGTAGTT 58.702 45.455 12.88 3.81 0.00 2.24
4206 6053 2.946785 AGGCATAGTTCTAGGCGTAGT 58.053 47.619 12.88 0.00 0.00 2.73
4207 6054 3.120269 CGTAGGCATAGTTCTAGGCGTAG 60.120 52.174 15.58 7.12 29.69 3.51
4208 6055 2.810274 CGTAGGCATAGTTCTAGGCGTA 59.190 50.000 12.55 12.55 0.00 4.42
4209 6056 1.607628 CGTAGGCATAGTTCTAGGCGT 59.392 52.381 14.18 14.18 0.00 5.68
4210 6057 1.666311 GCGTAGGCATAGTTCTAGGCG 60.666 57.143 1.75 0.00 37.53 5.52
4211 6058 2.067414 GCGTAGGCATAGTTCTAGGC 57.933 55.000 7.79 7.79 39.21 3.93
4236 6083 2.001361 ATGTAGAAGGCGGACGACGG 62.001 60.000 0.00 0.00 44.51 4.79
4238 6085 1.146358 GCATGTAGAAGGCGGACGAC 61.146 60.000 0.00 0.00 0.00 4.34
4239 6086 1.141019 GCATGTAGAAGGCGGACGA 59.859 57.895 0.00 0.00 0.00 4.20
4240 6087 1.883084 GGCATGTAGAAGGCGGACG 60.883 63.158 0.00 0.00 0.00 4.79
4241 6088 4.126524 GGCATGTAGAAGGCGGAC 57.873 61.111 0.00 0.00 0.00 4.79
4245 6092 0.249657 CTCCTCGGCATGTAGAAGGC 60.250 60.000 0.00 0.00 0.00 4.35
4246 6093 0.249657 GCTCCTCGGCATGTAGAAGG 60.250 60.000 0.00 0.00 0.00 3.46
4247 6094 0.249657 GGCTCCTCGGCATGTAGAAG 60.250 60.000 0.00 0.00 38.25 2.85
4248 6095 0.687757 AGGCTCCTCGGCATGTAGAA 60.688 55.000 0.00 0.00 41.46 2.10
4249 6096 1.075970 AGGCTCCTCGGCATGTAGA 60.076 57.895 0.00 0.00 41.46 2.59
4250 6097 1.068753 CAGGCTCCTCGGCATGTAG 59.931 63.158 0.00 0.00 38.88 2.74
4251 6098 3.220222 CAGGCTCCTCGGCATGTA 58.780 61.111 0.00 0.00 38.88 2.29
4254 6101 0.687757 TTCTACAGGCTCCTCGGCAT 60.688 55.000 0.00 0.00 41.46 4.40
4255 6102 0.902984 TTTCTACAGGCTCCTCGGCA 60.903 55.000 0.00 0.00 41.46 5.69
4256 6103 0.460459 GTTTCTACAGGCTCCTCGGC 60.460 60.000 0.00 0.00 38.75 5.54
4257 6104 0.179134 CGTTTCTACAGGCTCCTCGG 60.179 60.000 0.00 0.00 0.00 4.63
4258 6105 0.179134 CCGTTTCTACAGGCTCCTCG 60.179 60.000 0.00 0.00 0.00 4.63
4259 6106 0.175989 CCCGTTTCTACAGGCTCCTC 59.824 60.000 0.00 0.00 0.00 3.71
4260 6107 0.544595 ACCCGTTTCTACAGGCTCCT 60.545 55.000 0.00 0.00 0.00 3.69
4261 6108 0.391263 CACCCGTTTCTACAGGCTCC 60.391 60.000 0.00 0.00 0.00 4.70
4262 6109 0.320697 ACACCCGTTTCTACAGGCTC 59.679 55.000 0.00 0.00 0.00 4.70
4263 6110 1.549170 CTACACCCGTTTCTACAGGCT 59.451 52.381 0.00 0.00 0.00 4.58
4264 6111 1.274447 ACTACACCCGTTTCTACAGGC 59.726 52.381 0.00 0.00 0.00 4.85
4265 6112 2.415090 CGACTACACCCGTTTCTACAGG 60.415 54.545 0.00 0.00 0.00 4.00
4266 6113 2.227388 ACGACTACACCCGTTTCTACAG 59.773 50.000 0.00 0.00 35.21 2.74
4267 6114 2.226437 GACGACTACACCCGTTTCTACA 59.774 50.000 0.00 0.00 39.30 2.74
4268 6115 2.726066 CGACGACTACACCCGTTTCTAC 60.726 54.545 0.00 0.00 39.30 2.59
4269 6116 1.464608 CGACGACTACACCCGTTTCTA 59.535 52.381 0.00 0.00 39.30 2.10
4270 6117 0.239347 CGACGACTACACCCGTTTCT 59.761 55.000 0.00 0.00 39.30 2.52
4271 6118 0.040067 ACGACGACTACACCCGTTTC 60.040 55.000 0.00 0.00 39.30 2.78
4272 6119 0.040067 GACGACGACTACACCCGTTT 60.040 55.000 0.00 0.00 39.30 3.60
4273 6120 1.576421 GACGACGACTACACCCGTT 59.424 57.895 0.00 0.00 39.30 4.44
4274 6121 2.671177 CGACGACGACTACACCCGT 61.671 63.158 0.00 0.00 42.66 5.28
4275 6122 2.097160 CGACGACGACTACACCCG 59.903 66.667 0.00 0.00 42.66 5.28
4276 6123 2.202401 GCGACGACGACTACACCC 60.202 66.667 12.29 0.00 42.66 4.61
4277 6124 2.572647 CGCGACGACGACTACACC 60.573 66.667 12.29 0.00 42.66 4.16
4278 6125 3.229184 GCGCGACGACGACTACAC 61.229 66.667 12.10 0.00 42.66 2.90
4313 6160 4.468689 GGGTGCAGTAGGGACGGC 62.469 72.222 0.00 0.00 45.87 5.68
4314 6161 3.782443 GGGGTGCAGTAGGGACGG 61.782 72.222 0.00 0.00 39.01 4.79
4315 6162 2.683933 AGGGGTGCAGTAGGGACG 60.684 66.667 0.00 0.00 39.01 4.79
4316 6163 2.670148 CCAGGGGTGCAGTAGGGAC 61.670 68.421 0.00 0.00 37.06 4.46
4317 6164 2.285368 CCAGGGGTGCAGTAGGGA 60.285 66.667 0.00 0.00 0.00 4.20
4318 6165 4.115199 GCCAGGGGTGCAGTAGGG 62.115 72.222 0.00 0.00 0.00 3.53
4319 6166 4.115199 GGCCAGGGGTGCAGTAGG 62.115 72.222 0.00 0.00 0.00 3.18
4320 6167 3.329889 TGGCCAGGGGTGCAGTAG 61.330 66.667 0.00 0.00 0.00 2.57
4321 6168 3.329889 CTGGCCAGGGGTGCAGTA 61.330 66.667 26.14 0.00 0.00 2.74
4383 6230 3.519930 GACGAGGAGGACGAGGCC 61.520 72.222 0.00 0.00 34.70 5.19
4384 6231 3.878519 CGACGAGGAGGACGAGGC 61.879 72.222 0.00 0.00 34.70 4.70
4385 6232 3.878519 GCGACGAGGAGGACGAGG 61.879 72.222 0.00 0.00 34.70 4.63
4386 6233 2.820479 AGCGACGAGGAGGACGAG 60.820 66.667 0.00 0.00 34.70 4.18
4387 6234 3.125573 CAGCGACGAGGAGGACGA 61.126 66.667 0.00 0.00 34.70 4.20
4388 6235 3.384014 GACAGCGACGAGGAGGACG 62.384 68.421 0.00 0.00 0.00 4.79
4389 6236 2.486042 GACAGCGACGAGGAGGAC 59.514 66.667 0.00 0.00 0.00 3.85
4390 6237 3.125573 CGACAGCGACGAGGAGGA 61.126 66.667 0.00 0.00 40.82 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.