Multiple sequence alignment - TraesCS7B01G315200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G315200 chr7B 100.000 4389 0 0 1 4389 562748849 562744461 0.000000e+00 8106.0
1 TraesCS7B01G315200 chr7B 89.388 245 26 0 341 585 384436284 384436040 4.260000e-80 309.0
2 TraesCS7B01G315200 chr7D 90.400 3927 185 74 586 4389 526244294 526240437 0.000000e+00 4987.0
3 TraesCS7B01G315200 chr7D 84.615 364 14 12 1 328 526244648 526244291 1.520000e-84 324.0
4 TraesCS7B01G315200 chr7A 89.526 1604 72 25 638 2194 606564839 606563285 0.000000e+00 1943.0
5 TraesCS7B01G315200 chr7A 86.556 1748 131 42 2124 3811 606563238 606561535 0.000000e+00 1831.0
6 TraesCS7B01G315200 chr7A 89.602 327 24 3 4073 4389 606560630 606560304 1.470000e-109 407.0
7 TraesCS7B01G315200 chr7A 92.147 191 8 5 1 190 606565147 606564963 3.370000e-66 263.0
8 TraesCS7B01G315200 chr7A 93.651 126 7 1 3883 4007 606560778 606560653 2.080000e-43 187.0
9 TraesCS7B01G315200 chr7A 81.944 72 10 3 255 324 606564946 606564876 1.700000e-04 58.4
10 TraesCS7B01G315200 chr5D 86.680 1021 71 31 3077 4054 388344353 388345351 0.000000e+00 1072.0
11 TraesCS7B01G315200 chr5D 84.049 163 18 4 2829 2991 388343871 388344025 2.730000e-32 150.0
12 TraesCS7B01G315200 chr5D 92.727 55 4 0 3031 3085 388344087 388344141 3.640000e-11 80.5
13 TraesCS7B01G315200 chr5B 89.474 247 26 0 341 587 503891359 503891113 3.300000e-81 313.0
14 TraesCS7B01G315200 chr1B 89.388 245 26 0 341 585 393164834 393164590 4.260000e-80 309.0
15 TraesCS7B01G315200 chr6B 89.388 245 25 1 341 585 585597644 585597401 1.530000e-79 307.0
16 TraesCS7B01G315200 chr6B 89.300 243 26 0 341 583 564102584 564102342 5.510000e-79 305.0
17 TraesCS7B01G315200 chr3B 89.069 247 27 0 341 587 557194156 557193910 1.530000e-79 307.0
18 TraesCS7B01G315200 chr2A 89.024 246 27 0 341 586 587744522 587744767 5.510000e-79 305.0
19 TraesCS7B01G315200 chr4B 88.980 245 27 0 341 585 512858264 512858020 1.980000e-78 303.0
20 TraesCS7B01G315200 chr2B 88.980 245 27 0 341 585 786347238 786346994 1.980000e-78 303.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G315200 chr7B 562744461 562748849 4388 True 8106.000000 8106 100.000000 1 4389 1 chr7B.!!$R2 4388
1 TraesCS7B01G315200 chr7D 526240437 526244648 4211 True 2655.500000 4987 87.507500 1 4389 2 chr7D.!!$R1 4388
2 TraesCS7B01G315200 chr7A 606560304 606565147 4843 True 781.566667 1943 88.904333 1 4389 6 chr7A.!!$R1 4388
3 TraesCS7B01G315200 chr5D 388343871 388345351 1480 False 434.166667 1072 87.818667 2829 4054 3 chr5D.!!$F1 1225

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
585 624 0.032615 TCACAAACCAAACAGCCCCT 60.033 50.0 0.00 0.0 0.00 4.79 F
1911 2016 0.395586 AGAACAACAACCTGCTGGCA 60.396 50.0 9.95 0.0 36.63 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2046 2151 0.316204 CACCGTACCTGAACTTCCGT 59.684 55.0 0.0 0.0 0.0 4.69 R
3502 4030 0.036022 GCTTCCTTGCACCTCTGACT 59.964 55.0 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 2.109517 AAACAATGCAATGCGCCCCA 62.110 50.000 4.18 0.00 41.33 4.96
325 364 2.266055 CGCTCCCAGGTGAGGTTC 59.734 66.667 6.98 0.00 32.81 3.62
328 367 2.606519 TCCCAGGTGAGGTTCGGG 60.607 66.667 0.00 0.00 38.34 5.14
329 368 3.717294 CCCAGGTGAGGTTCGGGG 61.717 72.222 0.00 0.00 32.88 5.73
330 369 3.717294 CCAGGTGAGGTTCGGGGG 61.717 72.222 0.00 0.00 0.00 5.40
331 370 4.410400 CAGGTGAGGTTCGGGGGC 62.410 72.222 0.00 0.00 0.00 5.80
332 371 4.658786 AGGTGAGGTTCGGGGGCT 62.659 66.667 0.00 0.00 0.00 5.19
333 372 4.410400 GGTGAGGTTCGGGGGCTG 62.410 72.222 0.00 0.00 0.00 4.85
334 373 3.637273 GTGAGGTTCGGGGGCTGT 61.637 66.667 0.00 0.00 0.00 4.40
335 374 2.852075 TGAGGTTCGGGGGCTGTT 60.852 61.111 0.00 0.00 0.00 3.16
336 375 2.434774 GAGGTTCGGGGGCTGTTT 59.565 61.111 0.00 0.00 0.00 2.83
337 376 1.971695 GAGGTTCGGGGGCTGTTTG 60.972 63.158 0.00 0.00 0.00 2.93
338 377 2.114411 GGTTCGGGGGCTGTTTGA 59.886 61.111 0.00 0.00 0.00 2.69
339 378 1.304134 GGTTCGGGGGCTGTTTGAT 60.304 57.895 0.00 0.00 0.00 2.57
340 379 0.898326 GGTTCGGGGGCTGTTTGATT 60.898 55.000 0.00 0.00 0.00 2.57
341 380 1.614850 GGTTCGGGGGCTGTTTGATTA 60.615 52.381 0.00 0.00 0.00 1.75
342 381 1.743394 GTTCGGGGGCTGTTTGATTAG 59.257 52.381 0.00 0.00 0.00 1.73
343 382 0.393808 TCGGGGGCTGTTTGATTAGC 60.394 55.000 0.00 0.00 39.17 3.09
344 383 0.679640 CGGGGGCTGTTTGATTAGCA 60.680 55.000 0.00 0.00 41.63 3.49
345 384 1.780503 GGGGGCTGTTTGATTAGCAT 58.219 50.000 0.00 0.00 41.63 3.79
346 385 2.110578 GGGGGCTGTTTGATTAGCATT 58.889 47.619 0.00 0.00 41.63 3.56
347 386 3.295973 GGGGGCTGTTTGATTAGCATTA 58.704 45.455 0.00 0.00 41.63 1.90
348 387 3.068165 GGGGGCTGTTTGATTAGCATTAC 59.932 47.826 0.00 0.00 41.63 1.89
349 388 3.068165 GGGGCTGTTTGATTAGCATTACC 59.932 47.826 0.00 0.00 41.63 2.85
350 389 3.699038 GGGCTGTTTGATTAGCATTACCA 59.301 43.478 0.00 0.00 41.63 3.25
351 390 4.440112 GGGCTGTTTGATTAGCATTACCAC 60.440 45.833 0.00 0.00 41.63 4.16
352 391 4.157656 GGCTGTTTGATTAGCATTACCACA 59.842 41.667 0.00 0.00 41.63 4.17
353 392 5.095490 GCTGTTTGATTAGCATTACCACAC 58.905 41.667 0.00 0.00 39.67 3.82
354 393 5.106157 GCTGTTTGATTAGCATTACCACACT 60.106 40.000 0.00 0.00 39.67 3.55
355 394 6.570378 GCTGTTTGATTAGCATTACCACACTT 60.570 38.462 0.00 0.00 39.67 3.16
356 395 7.283625 TGTTTGATTAGCATTACCACACTTT 57.716 32.000 0.00 0.00 0.00 2.66
357 396 8.397575 TGTTTGATTAGCATTACCACACTTTA 57.602 30.769 0.00 0.00 0.00 1.85
358 397 9.019656 TGTTTGATTAGCATTACCACACTTTAT 57.980 29.630 0.00 0.00 0.00 1.40
359 398 9.503427 GTTTGATTAGCATTACCACACTTTATC 57.497 33.333 0.00 0.00 0.00 1.75
360 399 8.800370 TTGATTAGCATTACCACACTTTATCA 57.200 30.769 0.00 0.00 0.00 2.15
361 400 8.208718 TGATTAGCATTACCACACTTTATCAC 57.791 34.615 0.00 0.00 0.00 3.06
362 401 7.826744 TGATTAGCATTACCACACTTTATCACA 59.173 33.333 0.00 0.00 0.00 3.58
363 402 8.752005 ATTAGCATTACCACACTTTATCACAT 57.248 30.769 0.00 0.00 0.00 3.21
364 403 9.845740 ATTAGCATTACCACACTTTATCACATA 57.154 29.630 0.00 0.00 0.00 2.29
365 404 9.845740 TTAGCATTACCACACTTTATCACATAT 57.154 29.630 0.00 0.00 0.00 1.78
366 405 8.752005 AGCATTACCACACTTTATCACATATT 57.248 30.769 0.00 0.00 0.00 1.28
367 406 9.189156 AGCATTACCACACTTTATCACATATTT 57.811 29.630 0.00 0.00 0.00 1.40
368 407 9.801873 GCATTACCACACTTTATCACATATTTT 57.198 29.630 0.00 0.00 0.00 1.82
373 412 8.855110 ACCACACTTTATCACATATTTTTGTCA 58.145 29.630 0.00 0.00 0.00 3.58
374 413 9.689976 CCACACTTTATCACATATTTTTGTCAA 57.310 29.630 0.00 0.00 0.00 3.18
391 430 9.660180 TTTTTGTCAAATTTGCTTAAGGTTAGT 57.340 25.926 13.54 0.00 0.00 2.24
392 431 9.660180 TTTTGTCAAATTTGCTTAAGGTTAGTT 57.340 25.926 13.54 0.00 0.00 2.24
409 448 8.189119 AGGTTAGTTAATCAAAATGAAAGGCA 57.811 30.769 0.00 0.00 0.00 4.75
410 449 8.815912 AGGTTAGTTAATCAAAATGAAAGGCAT 58.184 29.630 0.00 0.00 39.43 4.40
418 457 8.538409 AATCAAAATGAAAGGCATAAGTTGAC 57.462 30.769 0.00 0.00 36.27 3.18
419 458 7.048629 TCAAAATGAAAGGCATAAGTTGACA 57.951 32.000 0.00 0.00 34.87 3.58
420 459 7.495901 TCAAAATGAAAGGCATAAGTTGACAA 58.504 30.769 0.00 0.00 34.87 3.18
421 460 7.652909 TCAAAATGAAAGGCATAAGTTGACAAG 59.347 33.333 0.00 0.00 34.87 3.16
422 461 6.655078 AATGAAAGGCATAAGTTGACAAGT 57.345 33.333 0.00 0.00 34.87 3.16
423 462 5.689383 TGAAAGGCATAAGTTGACAAGTC 57.311 39.130 0.00 0.00 34.87 3.01
424 463 5.376625 TGAAAGGCATAAGTTGACAAGTCT 58.623 37.500 1.53 0.00 34.87 3.24
425 464 6.530120 TGAAAGGCATAAGTTGACAAGTCTA 58.470 36.000 1.53 0.00 34.87 2.59
426 465 6.995686 TGAAAGGCATAAGTTGACAAGTCTAA 59.004 34.615 1.53 0.00 34.87 2.10
427 466 7.173218 TGAAAGGCATAAGTTGACAAGTCTAAG 59.827 37.037 1.53 0.00 34.87 2.18
428 467 6.360370 AGGCATAAGTTGACAAGTCTAAGA 57.640 37.500 1.53 0.00 34.87 2.10
429 468 6.769512 AGGCATAAGTTGACAAGTCTAAGAA 58.230 36.000 1.53 0.00 34.87 2.52
430 469 7.224297 AGGCATAAGTTGACAAGTCTAAGAAA 58.776 34.615 1.53 0.00 34.87 2.52
431 470 7.719633 AGGCATAAGTTGACAAGTCTAAGAAAA 59.280 33.333 1.53 0.00 34.87 2.29
432 471 8.515414 GGCATAAGTTGACAAGTCTAAGAAAAT 58.485 33.333 1.53 0.00 31.51 1.82
433 472 9.548208 GCATAAGTTGACAAGTCTAAGAAAATC 57.452 33.333 1.53 0.00 0.00 2.17
438 477 9.274206 AGTTGACAAGTCTAAGAAAATCTTACC 57.726 33.333 1.53 0.00 37.89 2.85
439 478 9.052759 GTTGACAAGTCTAAGAAAATCTTACCA 57.947 33.333 1.53 0.00 37.89 3.25
440 479 8.603242 TGACAAGTCTAAGAAAATCTTACCAC 57.397 34.615 1.53 0.00 37.89 4.16
441 480 8.208224 TGACAAGTCTAAGAAAATCTTACCACA 58.792 33.333 1.53 0.00 37.89 4.17
442 481 9.220767 GACAAGTCTAAGAAAATCTTACCACAT 57.779 33.333 0.00 0.00 37.89 3.21
443 482 9.574516 ACAAGTCTAAGAAAATCTTACCACATT 57.425 29.630 0.00 0.00 37.89 2.71
467 506 7.953005 TTTTTGTGTGTATATCATGTGGGAT 57.047 32.000 0.00 0.00 0.00 3.85
468 507 7.566760 TTTTGTGTGTATATCATGTGGGATC 57.433 36.000 0.00 0.00 0.00 3.36
469 508 6.499106 TTGTGTGTATATCATGTGGGATCT 57.501 37.500 0.00 0.00 0.00 2.75
470 509 7.610580 TTGTGTGTATATCATGTGGGATCTA 57.389 36.000 0.00 0.00 0.00 1.98
471 510 7.610580 TGTGTGTATATCATGTGGGATCTAA 57.389 36.000 0.00 0.00 0.00 2.10
472 511 8.028652 TGTGTGTATATCATGTGGGATCTAAA 57.971 34.615 0.00 0.00 0.00 1.85
473 512 8.659527 TGTGTGTATATCATGTGGGATCTAAAT 58.340 33.333 0.00 0.00 0.00 1.40
474 513 8.939929 GTGTGTATATCATGTGGGATCTAAATG 58.060 37.037 0.00 0.00 0.00 2.32
475 514 8.659527 TGTGTATATCATGTGGGATCTAAATGT 58.340 33.333 0.00 0.00 0.00 2.71
476 515 8.939929 GTGTATATCATGTGGGATCTAAATGTG 58.060 37.037 0.00 0.00 0.00 3.21
477 516 8.102676 TGTATATCATGTGGGATCTAAATGTGG 58.897 37.037 0.00 0.00 0.00 4.17
478 517 3.554934 TCATGTGGGATCTAAATGTGGC 58.445 45.455 0.00 0.00 0.00 5.01
479 518 3.202818 TCATGTGGGATCTAAATGTGGCT 59.797 43.478 0.00 0.00 0.00 4.75
480 519 3.737559 TGTGGGATCTAAATGTGGCTT 57.262 42.857 0.00 0.00 0.00 4.35
481 520 3.355378 TGTGGGATCTAAATGTGGCTTG 58.645 45.455 0.00 0.00 0.00 4.01
482 521 2.689983 GTGGGATCTAAATGTGGCTTGG 59.310 50.000 0.00 0.00 0.00 3.61
483 522 1.683385 GGGATCTAAATGTGGCTTGGC 59.317 52.381 0.00 0.00 0.00 4.52
484 523 2.659428 GGATCTAAATGTGGCTTGGCT 58.341 47.619 0.00 0.00 0.00 4.75
485 524 3.435026 GGGATCTAAATGTGGCTTGGCTA 60.435 47.826 0.00 0.00 0.00 3.93
486 525 4.207165 GGATCTAAATGTGGCTTGGCTAA 58.793 43.478 0.00 0.00 0.00 3.09
487 526 4.276926 GGATCTAAATGTGGCTTGGCTAAG 59.723 45.833 5.28 5.28 36.97 2.18
488 527 4.568072 TCTAAATGTGGCTTGGCTAAGA 57.432 40.909 14.82 0.00 35.92 2.10
489 528 5.116084 TCTAAATGTGGCTTGGCTAAGAT 57.884 39.130 14.82 0.00 35.92 2.40
490 529 4.883585 TCTAAATGTGGCTTGGCTAAGATG 59.116 41.667 14.82 0.00 35.92 2.90
491 530 2.814805 ATGTGGCTTGGCTAAGATGT 57.185 45.000 14.82 0.00 35.92 3.06
492 531 1.825090 TGTGGCTTGGCTAAGATGTG 58.175 50.000 14.82 0.00 35.92 3.21
493 532 1.098050 GTGGCTTGGCTAAGATGTGG 58.902 55.000 14.82 0.00 35.92 4.17
494 533 0.680921 TGGCTTGGCTAAGATGTGGC 60.681 55.000 14.82 0.00 35.92 5.01
495 534 0.394899 GGCTTGGCTAAGATGTGGCT 60.395 55.000 14.82 0.00 35.92 4.75
496 535 1.467920 GCTTGGCTAAGATGTGGCTT 58.532 50.000 14.82 0.00 35.92 4.35
497 536 1.133790 GCTTGGCTAAGATGTGGCTTG 59.866 52.381 14.82 0.00 35.92 4.01
498 537 2.715046 CTTGGCTAAGATGTGGCTTGA 58.285 47.619 3.24 0.00 35.92 3.02
499 538 2.877097 TGGCTAAGATGTGGCTTGAA 57.123 45.000 0.00 0.00 0.00 2.69
500 539 2.436417 TGGCTAAGATGTGGCTTGAAC 58.564 47.619 0.00 0.00 0.00 3.18
501 540 1.745653 GGCTAAGATGTGGCTTGAACC 59.254 52.381 0.00 0.00 0.00 3.62
502 541 2.436417 GCTAAGATGTGGCTTGAACCA 58.564 47.619 0.00 0.00 37.38 3.67
503 542 2.819608 GCTAAGATGTGGCTTGAACCAA 59.180 45.455 0.00 0.00 42.70 3.67
504 543 3.255642 GCTAAGATGTGGCTTGAACCAAA 59.744 43.478 0.00 0.00 42.70 3.28
505 544 3.733443 AAGATGTGGCTTGAACCAAAC 57.267 42.857 0.00 0.00 42.70 2.93
506 545 2.665165 AGATGTGGCTTGAACCAAACA 58.335 42.857 0.00 0.00 42.70 2.83
507 546 2.362077 AGATGTGGCTTGAACCAAACAC 59.638 45.455 0.00 0.00 42.70 3.32
508 547 1.846007 TGTGGCTTGAACCAAACACT 58.154 45.000 12.25 0.00 42.70 3.55
509 548 1.748493 TGTGGCTTGAACCAAACACTC 59.252 47.619 12.25 0.00 42.70 3.51
510 549 1.748493 GTGGCTTGAACCAAACACTCA 59.252 47.619 0.00 0.00 42.70 3.41
511 550 2.362077 GTGGCTTGAACCAAACACTCAT 59.638 45.455 0.00 0.00 42.70 2.90
512 551 2.622942 TGGCTTGAACCAAACACTCATC 59.377 45.455 0.00 0.00 36.55 2.92
513 552 2.887152 GGCTTGAACCAAACACTCATCT 59.113 45.455 0.00 0.00 0.00 2.90
514 553 4.072131 GGCTTGAACCAAACACTCATCTA 58.928 43.478 0.00 0.00 0.00 1.98
515 554 4.518970 GGCTTGAACCAAACACTCATCTAA 59.481 41.667 0.00 0.00 0.00 2.10
516 555 5.335191 GGCTTGAACCAAACACTCATCTAAG 60.335 44.000 0.00 0.00 0.00 2.18
517 556 5.239525 GCTTGAACCAAACACTCATCTAAGT 59.760 40.000 0.00 0.00 0.00 2.24
518 557 6.238759 GCTTGAACCAAACACTCATCTAAGTT 60.239 38.462 0.00 0.00 0.00 2.66
519 558 7.041372 GCTTGAACCAAACACTCATCTAAGTTA 60.041 37.037 0.00 0.00 0.00 2.24
520 559 8.740123 TTGAACCAAACACTCATCTAAGTTAA 57.260 30.769 0.00 0.00 0.00 2.01
521 560 8.918202 TGAACCAAACACTCATCTAAGTTAAT 57.082 30.769 0.00 0.00 0.00 1.40
522 561 8.999431 TGAACCAAACACTCATCTAAGTTAATC 58.001 33.333 0.00 0.00 0.00 1.75
523 562 8.918202 AACCAAACACTCATCTAAGTTAATCA 57.082 30.769 0.00 0.00 0.00 2.57
524 563 8.918202 ACCAAACACTCATCTAAGTTAATCAA 57.082 30.769 0.00 0.00 0.00 2.57
525 564 9.349713 ACCAAACACTCATCTAAGTTAATCAAA 57.650 29.630 0.00 0.00 0.00 2.69
526 565 9.612620 CCAAACACTCATCTAAGTTAATCAAAC 57.387 33.333 0.00 0.00 38.46 2.93
547 586 6.387041 AACTTTTCTAGTTTTAGGTGTGGC 57.613 37.500 0.00 0.00 44.73 5.01
548 587 5.442391 ACTTTTCTAGTTTTAGGTGTGGCA 58.558 37.500 0.00 0.00 31.29 4.92
549 588 5.889289 ACTTTTCTAGTTTTAGGTGTGGCAA 59.111 36.000 0.00 0.00 31.29 4.52
550 589 5.761165 TTTCTAGTTTTAGGTGTGGCAAC 57.239 39.130 0.00 0.00 0.00 4.17
551 590 8.499649 ACTTTTCTAGTTTTAGGTGTGGCAACA 61.500 37.037 0.00 0.00 38.05 3.33
567 606 4.972286 GCAACATTTGGCAAAGTTAGTC 57.028 40.909 18.61 10.50 0.00 2.59
568 607 4.367450 GCAACATTTGGCAAAGTTAGTCA 58.633 39.130 18.61 0.00 0.00 3.41
569 608 4.209080 GCAACATTTGGCAAAGTTAGTCAC 59.791 41.667 18.61 6.49 0.00 3.67
570 609 5.347342 CAACATTTGGCAAAGTTAGTCACA 58.653 37.500 18.61 0.00 0.00 3.58
571 610 5.590530 ACATTTGGCAAAGTTAGTCACAA 57.409 34.783 18.61 0.00 0.00 3.33
572 611 5.971763 ACATTTGGCAAAGTTAGTCACAAA 58.028 33.333 18.61 0.00 0.00 2.83
573 612 5.810074 ACATTTGGCAAAGTTAGTCACAAAC 59.190 36.000 18.61 0.00 0.00 2.93
574 613 4.379339 TTGGCAAAGTTAGTCACAAACC 57.621 40.909 0.00 0.00 0.00 3.27
575 614 3.357203 TGGCAAAGTTAGTCACAAACCA 58.643 40.909 0.00 0.00 0.00 3.67
576 615 3.764434 TGGCAAAGTTAGTCACAAACCAA 59.236 39.130 0.00 0.00 0.00 3.67
577 616 4.220821 TGGCAAAGTTAGTCACAAACCAAA 59.779 37.500 0.00 0.00 0.00 3.28
578 617 4.565166 GGCAAAGTTAGTCACAAACCAAAC 59.435 41.667 0.00 0.00 0.00 2.93
579 618 5.164954 GCAAAGTTAGTCACAAACCAAACA 58.835 37.500 0.00 0.00 30.35 2.83
580 619 5.288472 GCAAAGTTAGTCACAAACCAAACAG 59.712 40.000 0.00 0.00 30.35 3.16
581 620 4.632538 AGTTAGTCACAAACCAAACAGC 57.367 40.909 0.00 0.00 30.35 4.40
582 621 3.380320 AGTTAGTCACAAACCAAACAGCC 59.620 43.478 0.00 0.00 30.35 4.85
583 622 1.111277 AGTCACAAACCAAACAGCCC 58.889 50.000 0.00 0.00 0.00 5.19
584 623 0.104120 GTCACAAACCAAACAGCCCC 59.896 55.000 0.00 0.00 0.00 5.80
585 624 0.032615 TCACAAACCAAACAGCCCCT 60.033 50.000 0.00 0.00 0.00 4.79
586 625 0.829990 CACAAACCAAACAGCCCCTT 59.170 50.000 0.00 0.00 0.00 3.95
587 626 0.829990 ACAAACCAAACAGCCCCTTG 59.170 50.000 0.00 0.00 0.00 3.61
588 627 0.829990 CAAACCAAACAGCCCCTTGT 59.170 50.000 0.00 0.00 0.00 3.16
657 702 4.379243 CCTGTTGTCGCGCCTCCT 62.379 66.667 0.00 0.00 0.00 3.69
717 762 4.111016 CGGACGGCACTAGCGACA 62.111 66.667 0.00 0.00 43.41 4.35
721 766 2.430244 CGGCACTAGCGACACGTT 60.430 61.111 0.00 0.00 43.41 3.99
755 808 4.379652 AGGCGCATTTCAAATTTGAAGTT 58.620 34.783 27.52 18.84 46.68 2.66
764 817 3.788694 TCAAATTTGAAGTTTGCACGTCG 59.211 39.130 18.45 0.00 36.69 5.12
864 938 2.104170 GGACCCAAAGAACCAACACAA 58.896 47.619 0.00 0.00 0.00 3.33
866 940 3.517602 GACCCAAAGAACCAACACAAAC 58.482 45.455 0.00 0.00 0.00 2.93
918 997 5.036916 TCACTTCATCCCCATTAACTACCT 58.963 41.667 0.00 0.00 0.00 3.08
921 1000 2.367567 TCATCCCCATTAACTACCTCGC 59.632 50.000 0.00 0.00 0.00 5.03
923 1002 2.189676 TCCCCATTAACTACCTCGCAA 58.810 47.619 0.00 0.00 0.00 4.85
929 1008 3.648339 TTAACTACCTCGCAAGTCGTT 57.352 42.857 0.00 0.00 39.67 3.85
930 1009 2.061740 AACTACCTCGCAAGTCGTTC 57.938 50.000 0.00 0.00 39.67 3.95
934 1028 1.006102 CCTCGCAAGTCGTTCCAGT 60.006 57.895 0.00 0.00 39.67 4.00
964 1058 1.138883 CGCTTCGATCGTCCTTGGA 59.861 57.895 15.94 0.00 0.00 3.53
1206 1304 1.817099 GCCGCCATTCTCTGTCTGG 60.817 63.158 0.00 0.00 0.00 3.86
1225 1323 1.746615 CATCCTTGGCCACGACCTG 60.747 63.158 11.54 1.18 0.00 4.00
1466 1564 2.793946 CCCGAATCCGACGTACGT 59.206 61.111 23.04 23.04 40.78 3.57
1467 1565 2.013807 CCCGAATCCGACGTACGTA 58.986 57.895 22.87 6.32 40.78 3.57
1503 1606 2.444895 CCCTTCCCCCTCTCCTCG 60.445 72.222 0.00 0.00 0.00 4.63
1521 1626 2.438434 CCACCACATTCTCCGCCC 60.438 66.667 0.00 0.00 0.00 6.13
1603 1708 1.613630 TCCACCAGAGGGGAGAAGC 60.614 63.158 0.00 0.00 41.15 3.86
1604 1709 2.674220 CCACCAGAGGGGAGAAGCC 61.674 68.421 0.00 0.00 41.15 4.35
1613 1718 3.732849 GGAGAAGCCCCACCCCAG 61.733 72.222 0.00 0.00 0.00 4.45
1614 1719 4.432741 GAGAAGCCCCACCCCAGC 62.433 72.222 0.00 0.00 0.00 4.85
1711 1816 3.723364 GACATCGTGCGGTGCATGC 62.723 63.158 11.82 11.82 44.29 4.06
1911 2016 0.395586 AGAACAACAACCTGCTGGCA 60.396 50.000 9.95 0.00 36.63 4.92
2031 2136 1.470112 GGGAAGAAGCAGCTCGAGTAC 60.470 57.143 15.13 3.80 0.00 2.73
2046 2151 2.820922 TACGCCGCAGAGTCGCTA 60.821 61.111 5.63 0.00 0.00 4.26
2061 2166 1.470098 TCGCTACGGAAGTTCAGGTAC 59.530 52.381 7.93 0.00 46.40 3.34
2140 2257 4.394920 ACAGTGTACCAAACAAGACAACAG 59.605 41.667 0.00 0.00 40.63 3.16
2149 2266 5.398169 CAAACAAGACAACAGCACACTTTA 58.602 37.500 0.00 0.00 0.00 1.85
2314 2589 4.627467 CAGAAGTAAACCCTGTTCATCTCG 59.373 45.833 0.00 0.00 0.00 4.04
2337 2612 1.273887 CGATGCGAGATTGGCGTTC 59.726 57.895 0.00 0.00 0.00 3.95
2358 2633 3.056179 TCTGGATCAATCTGTACAACGCA 60.056 43.478 0.00 0.00 0.00 5.24
2362 2637 3.469899 TCAATCTGTACAACGCATTGC 57.530 42.857 0.00 0.00 39.66 3.56
2426 2701 3.820467 TGATTGTGTAGCCTTTCTGGTTG 59.180 43.478 0.00 0.00 38.35 3.77
2431 2706 2.106511 TGTAGCCTTTCTGGTTGAAGCT 59.893 45.455 0.00 0.00 38.91 3.74
2460 2735 2.569059 CATTGATGGTTGAGGCGAGAT 58.431 47.619 0.00 0.00 0.00 2.75
2501 2776 6.768381 GTCCTTTACAGGCTTATCTTGCTTAT 59.232 38.462 0.00 0.00 40.58 1.73
2571 2846 6.758416 GGTTTGCTTCAAAACTTCTTGATTCT 59.242 34.615 0.48 0.00 37.96 2.40
2577 2852 6.698008 TCAAAACTTCTTGATTCTTGCTCA 57.302 33.333 0.00 0.00 30.31 4.26
2584 2859 9.468532 AACTTCTTGATTCTTGCTCATTAAAAC 57.531 29.630 0.00 0.00 0.00 2.43
2585 2860 8.084684 ACTTCTTGATTCTTGCTCATTAAAACC 58.915 33.333 0.00 0.00 0.00 3.27
2587 2862 8.862325 TCTTGATTCTTGCTCATTAAAACCTA 57.138 30.769 0.00 0.00 0.00 3.08
2595 2870 9.507329 TCTTGCTCATTAAAACCTATATCCATC 57.493 33.333 0.00 0.00 0.00 3.51
2615 2890 8.980481 TCCATCTAACTATTTTTCCATTCCTC 57.020 34.615 0.00 0.00 0.00 3.71
2616 2891 8.556589 TCCATCTAACTATTTTTCCATTCCTCA 58.443 33.333 0.00 0.00 0.00 3.86
2617 2892 8.844244 CCATCTAACTATTTTTCCATTCCTCAG 58.156 37.037 0.00 0.00 0.00 3.35
2618 2893 9.401058 CATCTAACTATTTTTCCATTCCTCAGT 57.599 33.333 0.00 0.00 0.00 3.41
2620 2895 9.886132 TCTAACTATTTTTCCATTCCTCAGTAC 57.114 33.333 0.00 0.00 0.00 2.73
2633 2908 4.973168 TCCTCAGTACTTTGTGATGCTTT 58.027 39.130 0.00 0.00 0.00 3.51
2646 2921 9.630098 CTTTGTGATGCTTTATGTCTAACATTT 57.370 29.630 0.00 0.00 39.88 2.32
2654 2929 8.924691 TGCTTTATGTCTAACATTTTTGCAATC 58.075 29.630 0.00 0.00 39.88 2.67
2655 2930 8.382875 GCTTTATGTCTAACATTTTTGCAATCC 58.617 33.333 0.00 0.00 39.88 3.01
2672 2948 5.221904 TGCAATCCTATTATTCTAGGCTGCA 60.222 40.000 16.34 16.34 45.38 4.41
2675 2951 7.718753 GCAATCCTATTATTCTAGGCTGCATAT 59.281 37.037 0.50 0.00 41.88 1.78
2783 3059 0.879765 GTGAGCTGCAGTGCATCTTT 59.120 50.000 21.58 6.71 35.07 2.52
2784 3060 0.879090 TGAGCTGCAGTGCATCTTTG 59.121 50.000 21.58 9.75 35.07 2.77
2916 3192 5.913514 CAGAGAAAGTTCTGCATTTCAACAG 59.086 40.000 11.89 0.00 38.28 3.16
2982 3258 4.994907 TCGCCTGCAGTAAGTTTAGATA 57.005 40.909 13.81 0.00 0.00 1.98
2984 3260 5.914033 TCGCCTGCAGTAAGTTTAGATAAT 58.086 37.500 13.81 0.00 0.00 1.28
3000 3276 9.704098 GTTTAGATAATTCATTTGACGACTTCC 57.296 33.333 0.00 0.00 0.00 3.46
3005 3281 5.968387 ATTCATTTGACGACTTCCGATAC 57.032 39.130 0.00 0.00 41.76 2.24
3006 3282 4.443913 TCATTTGACGACTTCCGATACA 57.556 40.909 0.00 0.00 41.76 2.29
3011 3288 4.182693 TGACGACTTCCGATACAAATGT 57.817 40.909 0.00 0.00 41.76 2.71
3028 3305 5.070313 ACAAATGTAGCACCACCATTTTTCT 59.930 36.000 0.00 0.00 36.84 2.52
3054 3352 5.235616 CCTTTTTGTACTTAACTGACGAGCA 59.764 40.000 0.00 0.00 0.00 4.26
3112 3630 2.417515 CGTAAGGGAAGAGCTTCAGGAC 60.418 54.545 11.90 3.92 41.20 3.85
3381 3899 2.842496 TCCTGCCTGATATGGGATCATC 59.158 50.000 0.00 0.00 34.96 2.92
3401 3919 4.436242 TCGAACTGACTGGTAAGCTAAG 57.564 45.455 0.00 0.00 0.00 2.18
3405 3923 6.376299 TCGAACTGACTGGTAAGCTAAGATAA 59.624 38.462 0.00 0.00 0.00 1.75
3417 3936 8.903820 GGTAAGCTAAGATAATGTCCAACATTT 58.096 33.333 10.30 0.23 45.80 2.32
3430 3949 9.912634 AATGTCCAACATTTAAACTGTATTCTG 57.087 29.630 0.00 0.00 45.80 3.02
3431 3950 8.684386 TGTCCAACATTTAAACTGTATTCTGA 57.316 30.769 0.00 0.00 0.00 3.27
3432 3951 8.564574 TGTCCAACATTTAAACTGTATTCTGAC 58.435 33.333 0.00 0.00 0.00 3.51
3433 3952 8.784043 GTCCAACATTTAAACTGTATTCTGACT 58.216 33.333 0.00 0.00 0.00 3.41
3502 4030 7.093992 TGTATGTTGTAACAGTCGATCATCAA 58.906 34.615 3.66 0.00 43.04 2.57
3557 4085 0.944311 TCGAACTGAGCTGTTTCGGC 60.944 55.000 16.69 0.00 35.73 5.54
3558 4086 1.221466 CGAACTGAGCTGTTTCGGCA 61.221 55.000 11.40 0.00 38.37 5.69
3559 4087 0.944386 GAACTGAGCTGTTTCGGCAA 59.056 50.000 0.00 0.00 38.37 4.52
3582 4112 0.888619 CAAGTGCTCGACCAGGTCTA 59.111 55.000 17.95 5.79 0.00 2.59
3677 4236 5.961272 TGTCAGATAAATCTTGAGCACGTA 58.039 37.500 0.00 0.00 34.22 3.57
3695 4254 3.627577 ACGTAAGCTGGATTAATTGGCTG 59.372 43.478 10.13 3.52 45.62 4.85
3783 4343 8.581253 AACTAGCTAGCAAATAAAATGAAGGT 57.419 30.769 20.91 0.00 0.00 3.50
3806 4366 5.636121 GTGATCGTTATGAAGGTGTTGTGTA 59.364 40.000 0.00 0.00 0.00 2.90
3811 4371 7.255569 TCGTTATGAAGGTGTTGTGTATCTAG 58.744 38.462 0.00 0.00 0.00 2.43
3813 4373 8.186163 CGTTATGAAGGTGTTGTGTATCTAGTA 58.814 37.037 0.00 0.00 0.00 1.82
3816 4376 7.956328 TGAAGGTGTTGTGTATCTAGTATCT 57.044 36.000 0.00 0.00 0.00 1.98
3819 4379 9.122779 GAAGGTGTTGTGTATCTAGTATCTACT 57.877 37.037 0.00 0.00 40.24 2.57
3820 4380 8.453238 AGGTGTTGTGTATCTAGTATCTACTG 57.547 38.462 0.06 0.00 37.10 2.74
3821 4381 8.272889 AGGTGTTGTGTATCTAGTATCTACTGA 58.727 37.037 0.06 0.00 37.10 3.41
3822 4382 8.344098 GGTGTTGTGTATCTAGTATCTACTGAC 58.656 40.741 0.06 0.00 37.10 3.51
3823 4383 9.111613 GTGTTGTGTATCTAGTATCTACTGACT 57.888 37.037 0.06 0.00 37.10 3.41
3861 4477 1.003003 TGTATTGTGTGCCTGCAGCTA 59.997 47.619 8.66 0.00 44.23 3.32
3877 4493 3.055591 CAGCTATGATCTGCGGTACTTG 58.944 50.000 0.00 0.00 0.00 3.16
3887 5136 2.923655 CTGCGGTACTTGTCATGTAGTG 59.076 50.000 0.00 0.00 0.00 2.74
4007 5257 3.781079 TCAGCAGGTTTGTTTCAACAG 57.219 42.857 0.00 0.00 40.50 3.16
4009 5259 3.509575 TCAGCAGGTTTGTTTCAACAGTT 59.490 39.130 0.00 0.00 40.50 3.16
4010 5260 4.021544 TCAGCAGGTTTGTTTCAACAGTTT 60.022 37.500 0.00 0.00 40.50 2.66
4011 5261 4.091800 CAGCAGGTTTGTTTCAACAGTTTG 59.908 41.667 0.00 0.00 40.50 2.93
4012 5262 3.181521 GCAGGTTTGTTTCAACAGTTTGC 60.182 43.478 0.00 0.00 40.50 3.68
4042 5300 3.840666 TGGCTAGAAACAGACAGGAATCT 59.159 43.478 0.00 0.00 0.00 2.40
4056 5314 3.610242 CAGGAATCTTCAACTTCTCGTCG 59.390 47.826 0.00 0.00 0.00 5.12
4076 5336 4.095483 GTCGAATCCATTGAAAGATGCTGT 59.905 41.667 0.00 0.00 0.00 4.40
4079 5339 6.543465 TCGAATCCATTGAAAGATGCTGTATT 59.457 34.615 0.00 0.00 0.00 1.89
4131 5395 4.689071 TGAAGGCATTCATTCATTCATGC 58.311 39.130 10.22 0.00 40.54 4.06
4183 5451 3.258872 TGCCAAAAATGTATTGCTCTGCT 59.741 39.130 0.00 0.00 0.00 4.24
4315 5583 1.010013 GGAATTTCCGCCGCGATTC 60.010 57.895 15.93 14.87 0.00 2.52
4316 5584 1.711060 GGAATTTCCGCCGCGATTCA 61.711 55.000 15.93 0.00 31.72 2.57
4317 5585 0.588980 GAATTTCCGCCGCGATTCAC 60.589 55.000 15.93 0.00 0.00 3.18
4342 5617 2.158623 TGTGAGAAATGCAGTCCCAGTT 60.159 45.455 0.00 0.00 0.00 3.16
4348 5623 2.203480 GCAGTCCCAGTTTGGCCA 60.203 61.111 0.00 0.00 35.79 5.36
4363 5638 1.965930 GCCATGAACGTGCCTGTCA 60.966 57.895 0.00 0.00 0.00 3.58
4366 5641 1.541147 CCATGAACGTGCCTGTCATTT 59.459 47.619 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 6.458342 CCACGCTTTTGTTCTCTTCTTTTACT 60.458 38.462 0.00 0.00 0.00 2.24
150 152 0.895100 GTTCAGTTGGAGGCATGCCA 60.895 55.000 37.18 15.78 38.92 4.92
151 153 1.598701 GGTTCAGTTGGAGGCATGCC 61.599 60.000 30.12 30.12 0.00 4.40
243 281 4.814294 GGACCTGGCCTACGTGCG 62.814 72.222 3.32 0.00 0.00 5.34
325 364 0.679640 TGCTAATCAAACAGCCCCCG 60.680 55.000 0.00 0.00 36.95 5.73
328 367 3.699038 TGGTAATGCTAATCAAACAGCCC 59.301 43.478 0.00 0.00 36.95 5.19
329 368 4.157656 TGTGGTAATGCTAATCAAACAGCC 59.842 41.667 0.00 0.00 36.95 4.85
330 369 5.095490 GTGTGGTAATGCTAATCAAACAGC 58.905 41.667 0.00 0.00 38.31 4.40
331 370 6.500684 AGTGTGGTAATGCTAATCAAACAG 57.499 37.500 0.00 0.00 0.00 3.16
332 371 6.892658 AAGTGTGGTAATGCTAATCAAACA 57.107 33.333 0.00 0.00 0.00 2.83
333 372 9.503427 GATAAAGTGTGGTAATGCTAATCAAAC 57.497 33.333 0.00 0.00 0.00 2.93
334 373 9.237187 TGATAAAGTGTGGTAATGCTAATCAAA 57.763 29.630 0.00 0.00 0.00 2.69
335 374 8.673711 GTGATAAAGTGTGGTAATGCTAATCAA 58.326 33.333 0.00 0.00 0.00 2.57
336 375 7.826744 TGTGATAAAGTGTGGTAATGCTAATCA 59.173 33.333 0.00 0.00 0.00 2.57
337 376 8.208718 TGTGATAAAGTGTGGTAATGCTAATC 57.791 34.615 0.00 0.00 0.00 1.75
338 377 8.752005 ATGTGATAAAGTGTGGTAATGCTAAT 57.248 30.769 0.00 0.00 0.00 1.73
339 378 9.845740 ATATGTGATAAAGTGTGGTAATGCTAA 57.154 29.630 0.00 0.00 0.00 3.09
340 379 9.845740 AATATGTGATAAAGTGTGGTAATGCTA 57.154 29.630 0.00 0.00 0.00 3.49
341 380 8.752005 AATATGTGATAAAGTGTGGTAATGCT 57.248 30.769 0.00 0.00 0.00 3.79
342 381 9.801873 AAAATATGTGATAAAGTGTGGTAATGC 57.198 29.630 0.00 0.00 0.00 3.56
347 386 8.855110 TGACAAAAATATGTGATAAAGTGTGGT 58.145 29.630 0.00 0.00 32.57 4.16
348 387 9.689976 TTGACAAAAATATGTGATAAAGTGTGG 57.310 29.630 0.00 0.00 32.57 4.17
365 404 9.660180 ACTAACCTTAAGCAAATTTGACAAAAA 57.340 25.926 22.31 6.96 0.00 1.94
366 405 9.660180 AACTAACCTTAAGCAAATTTGACAAAA 57.340 25.926 22.31 8.56 0.00 2.44
383 422 8.646900 TGCCTTTCATTTTGATTAACTAACCTT 58.353 29.630 0.00 0.00 0.00 3.50
384 423 8.189119 TGCCTTTCATTTTGATTAACTAACCT 57.811 30.769 0.00 0.00 0.00 3.50
392 431 9.638239 GTCAACTTATGCCTTTCATTTTGATTA 57.362 29.630 0.00 0.00 36.63 1.75
393 432 8.149647 TGTCAACTTATGCCTTTCATTTTGATT 58.850 29.630 0.00 0.00 36.63 2.57
394 433 7.669427 TGTCAACTTATGCCTTTCATTTTGAT 58.331 30.769 0.00 0.00 36.63 2.57
395 434 7.048629 TGTCAACTTATGCCTTTCATTTTGA 57.951 32.000 0.00 0.00 36.63 2.69
396 435 7.439056 ACTTGTCAACTTATGCCTTTCATTTTG 59.561 33.333 0.00 0.00 36.63 2.44
397 436 7.500141 ACTTGTCAACTTATGCCTTTCATTTT 58.500 30.769 0.00 0.00 36.63 1.82
398 437 7.014615 AGACTTGTCAACTTATGCCTTTCATTT 59.985 33.333 3.49 0.00 36.63 2.32
399 438 6.491403 AGACTTGTCAACTTATGCCTTTCATT 59.509 34.615 3.49 0.00 36.63 2.57
400 439 6.006449 AGACTTGTCAACTTATGCCTTTCAT 58.994 36.000 3.49 0.00 39.17 2.57
401 440 5.376625 AGACTTGTCAACTTATGCCTTTCA 58.623 37.500 3.49 0.00 0.00 2.69
402 441 5.948992 AGACTTGTCAACTTATGCCTTTC 57.051 39.130 3.49 0.00 0.00 2.62
403 442 7.224297 TCTTAGACTTGTCAACTTATGCCTTT 58.776 34.615 3.49 0.00 0.00 3.11
404 443 6.769512 TCTTAGACTTGTCAACTTATGCCTT 58.230 36.000 3.49 0.00 0.00 4.35
405 444 6.360370 TCTTAGACTTGTCAACTTATGCCT 57.640 37.500 3.49 0.00 0.00 4.75
406 445 7.435068 TTTCTTAGACTTGTCAACTTATGCC 57.565 36.000 3.49 0.00 0.00 4.40
407 446 9.548208 GATTTTCTTAGACTTGTCAACTTATGC 57.452 33.333 3.49 0.00 0.00 3.14
412 451 9.274206 GGTAAGATTTTCTTAGACTTGTCAACT 57.726 33.333 3.49 0.00 39.41 3.16
413 452 9.052759 TGGTAAGATTTTCTTAGACTTGTCAAC 57.947 33.333 3.49 0.00 39.41 3.18
414 453 9.052759 GTGGTAAGATTTTCTTAGACTTGTCAA 57.947 33.333 3.49 0.00 39.41 3.18
415 454 8.208224 TGTGGTAAGATTTTCTTAGACTTGTCA 58.792 33.333 3.49 0.00 39.41 3.58
416 455 8.603242 TGTGGTAAGATTTTCTTAGACTTGTC 57.397 34.615 0.00 0.00 39.41 3.18
417 456 9.574516 AATGTGGTAAGATTTTCTTAGACTTGT 57.425 29.630 0.00 0.00 39.41 3.16
443 482 7.833682 AGATCCCACATGATATACACACAAAAA 59.166 33.333 0.00 0.00 0.00 1.94
444 483 7.345691 AGATCCCACATGATATACACACAAAA 58.654 34.615 0.00 0.00 0.00 2.44
445 484 6.899089 AGATCCCACATGATATACACACAAA 58.101 36.000 0.00 0.00 0.00 2.83
446 485 6.499106 AGATCCCACATGATATACACACAA 57.501 37.500 0.00 0.00 0.00 3.33
447 486 7.610580 TTAGATCCCACATGATATACACACA 57.389 36.000 0.00 0.00 0.00 3.72
448 487 8.939929 CATTTAGATCCCACATGATATACACAC 58.060 37.037 0.00 0.00 0.00 3.82
449 488 8.659527 ACATTTAGATCCCACATGATATACACA 58.340 33.333 0.00 0.00 0.00 3.72
450 489 8.939929 CACATTTAGATCCCACATGATATACAC 58.060 37.037 0.00 0.00 0.00 2.90
451 490 8.102676 CCACATTTAGATCCCACATGATATACA 58.897 37.037 0.00 0.00 0.00 2.29
452 491 7.066284 GCCACATTTAGATCCCACATGATATAC 59.934 40.741 0.00 0.00 0.00 1.47
453 492 7.037370 AGCCACATTTAGATCCCACATGATATA 60.037 37.037 0.00 0.00 0.00 0.86
454 493 5.948162 GCCACATTTAGATCCCACATGATAT 59.052 40.000 0.00 0.00 0.00 1.63
455 494 5.073554 AGCCACATTTAGATCCCACATGATA 59.926 40.000 0.00 0.00 0.00 2.15
456 495 4.141088 AGCCACATTTAGATCCCACATGAT 60.141 41.667 0.00 0.00 0.00 2.45
457 496 3.202818 AGCCACATTTAGATCCCACATGA 59.797 43.478 0.00 0.00 0.00 3.07
458 497 3.559069 AGCCACATTTAGATCCCACATG 58.441 45.455 0.00 0.00 0.00 3.21
459 498 3.956199 CAAGCCACATTTAGATCCCACAT 59.044 43.478 0.00 0.00 0.00 3.21
460 499 3.355378 CAAGCCACATTTAGATCCCACA 58.645 45.455 0.00 0.00 0.00 4.17
461 500 2.689983 CCAAGCCACATTTAGATCCCAC 59.310 50.000 0.00 0.00 0.00 4.61
462 501 2.949963 GCCAAGCCACATTTAGATCCCA 60.950 50.000 0.00 0.00 0.00 4.37
463 502 1.683385 GCCAAGCCACATTTAGATCCC 59.317 52.381 0.00 0.00 0.00 3.85
464 503 2.659428 AGCCAAGCCACATTTAGATCC 58.341 47.619 0.00 0.00 0.00 3.36
465 504 5.126067 TCTTAGCCAAGCCACATTTAGATC 58.874 41.667 0.00 0.00 0.00 2.75
466 505 5.116084 TCTTAGCCAAGCCACATTTAGAT 57.884 39.130 0.00 0.00 0.00 1.98
467 506 4.568072 TCTTAGCCAAGCCACATTTAGA 57.432 40.909 0.00 0.00 0.00 2.10
468 507 4.641989 ACATCTTAGCCAAGCCACATTTAG 59.358 41.667 0.00 0.00 0.00 1.85
469 508 4.398988 CACATCTTAGCCAAGCCACATTTA 59.601 41.667 0.00 0.00 0.00 1.40
470 509 3.194116 CACATCTTAGCCAAGCCACATTT 59.806 43.478 0.00 0.00 0.00 2.32
471 510 2.756760 CACATCTTAGCCAAGCCACATT 59.243 45.455 0.00 0.00 0.00 2.71
472 511 2.372264 CACATCTTAGCCAAGCCACAT 58.628 47.619 0.00 0.00 0.00 3.21
473 512 1.614051 CCACATCTTAGCCAAGCCACA 60.614 52.381 0.00 0.00 0.00 4.17
474 513 1.098050 CCACATCTTAGCCAAGCCAC 58.902 55.000 0.00 0.00 0.00 5.01
475 514 0.680921 GCCACATCTTAGCCAAGCCA 60.681 55.000 0.00 0.00 0.00 4.75
476 515 0.394899 AGCCACATCTTAGCCAAGCC 60.395 55.000 0.00 0.00 0.00 4.35
477 516 1.133790 CAAGCCACATCTTAGCCAAGC 59.866 52.381 0.00 0.00 0.00 4.01
478 517 2.715046 TCAAGCCACATCTTAGCCAAG 58.285 47.619 0.00 0.00 0.00 3.61
479 518 2.819608 GTTCAAGCCACATCTTAGCCAA 59.180 45.455 0.00 0.00 0.00 4.52
480 519 2.436417 GTTCAAGCCACATCTTAGCCA 58.564 47.619 0.00 0.00 0.00 4.75
481 520 1.745653 GGTTCAAGCCACATCTTAGCC 59.254 52.381 0.00 0.00 0.00 3.93
482 521 2.436417 TGGTTCAAGCCACATCTTAGC 58.564 47.619 0.00 0.00 32.81 3.09
483 522 4.278170 TGTTTGGTTCAAGCCACATCTTAG 59.722 41.667 0.00 0.00 38.42 2.18
484 523 4.037446 GTGTTTGGTTCAAGCCACATCTTA 59.963 41.667 0.00 0.00 38.42 2.10
485 524 3.030291 TGTTTGGTTCAAGCCACATCTT 58.970 40.909 0.00 0.00 38.42 2.40
486 525 2.362077 GTGTTTGGTTCAAGCCACATCT 59.638 45.455 0.00 0.00 38.42 2.90
487 526 2.362077 AGTGTTTGGTTCAAGCCACATC 59.638 45.455 11.95 0.00 38.42 3.06
488 527 2.362077 GAGTGTTTGGTTCAAGCCACAT 59.638 45.455 11.95 2.42 38.42 3.21
489 528 1.748493 GAGTGTTTGGTTCAAGCCACA 59.252 47.619 11.95 0.00 38.42 4.17
490 529 1.748493 TGAGTGTTTGGTTCAAGCCAC 59.252 47.619 0.00 0.00 38.42 5.01
491 530 2.136298 TGAGTGTTTGGTTCAAGCCA 57.864 45.000 0.00 0.00 36.62 4.75
492 531 2.887152 AGATGAGTGTTTGGTTCAAGCC 59.113 45.455 0.00 0.00 0.00 4.35
493 532 5.239525 ACTTAGATGAGTGTTTGGTTCAAGC 59.760 40.000 0.00 0.00 0.00 4.01
494 533 6.867662 ACTTAGATGAGTGTTTGGTTCAAG 57.132 37.500 0.00 0.00 0.00 3.02
495 534 8.740123 TTAACTTAGATGAGTGTTTGGTTCAA 57.260 30.769 0.00 0.00 0.00 2.69
496 535 8.918202 ATTAACTTAGATGAGTGTTTGGTTCA 57.082 30.769 0.00 0.00 0.00 3.18
497 536 8.999431 TGATTAACTTAGATGAGTGTTTGGTTC 58.001 33.333 0.00 0.00 0.00 3.62
498 537 8.918202 TGATTAACTTAGATGAGTGTTTGGTT 57.082 30.769 0.00 0.00 0.00 3.67
499 538 8.918202 TTGATTAACTTAGATGAGTGTTTGGT 57.082 30.769 0.00 0.00 0.00 3.67
500 539 9.612620 GTTTGATTAACTTAGATGAGTGTTTGG 57.387 33.333 0.00 0.00 33.79 3.28
525 564 5.442391 TGCCACACCTAAAACTAGAAAAGT 58.558 37.500 0.00 0.00 41.49 2.66
526 565 6.183360 TGTTGCCACACCTAAAACTAGAAAAG 60.183 38.462 0.00 0.00 0.00 2.27
527 566 5.652891 TGTTGCCACACCTAAAACTAGAAAA 59.347 36.000 0.00 0.00 0.00 2.29
528 567 5.194432 TGTTGCCACACCTAAAACTAGAAA 58.806 37.500 0.00 0.00 0.00 2.52
529 568 4.783055 TGTTGCCACACCTAAAACTAGAA 58.217 39.130 0.00 0.00 0.00 2.10
530 569 4.425180 TGTTGCCACACCTAAAACTAGA 57.575 40.909 0.00 0.00 0.00 2.43
531 570 5.705609 AATGTTGCCACACCTAAAACTAG 57.294 39.130 0.00 0.00 35.03 2.57
532 571 5.221342 CCAAATGTTGCCACACCTAAAACTA 60.221 40.000 0.00 0.00 35.03 2.24
533 572 4.442753 CCAAATGTTGCCACACCTAAAACT 60.443 41.667 0.00 0.00 35.03 2.66
534 573 3.807071 CCAAATGTTGCCACACCTAAAAC 59.193 43.478 0.00 0.00 35.03 2.43
535 574 3.742640 GCCAAATGTTGCCACACCTAAAA 60.743 43.478 0.00 0.00 35.03 1.52
536 575 2.224161 GCCAAATGTTGCCACACCTAAA 60.224 45.455 0.00 0.00 35.03 1.85
537 576 1.342819 GCCAAATGTTGCCACACCTAA 59.657 47.619 0.00 0.00 35.03 2.69
538 577 0.965439 GCCAAATGTTGCCACACCTA 59.035 50.000 0.00 0.00 35.03 3.08
539 578 1.047596 TGCCAAATGTTGCCACACCT 61.048 50.000 0.00 0.00 35.03 4.00
540 579 0.179062 TTGCCAAATGTTGCCACACC 60.179 50.000 0.00 0.00 35.03 4.16
541 580 1.598601 CTTTGCCAAATGTTGCCACAC 59.401 47.619 0.00 0.00 35.03 3.82
542 581 1.209019 ACTTTGCCAAATGTTGCCACA 59.791 42.857 0.00 0.00 37.31 4.17
543 582 1.952193 ACTTTGCCAAATGTTGCCAC 58.048 45.000 0.00 0.00 0.00 5.01
544 583 2.706339 AACTTTGCCAAATGTTGCCA 57.294 40.000 0.00 0.00 33.65 4.92
545 584 3.727726 ACTAACTTTGCCAAATGTTGCC 58.272 40.909 12.33 0.00 35.78 4.52
546 585 4.209080 GTGACTAACTTTGCCAAATGTTGC 59.791 41.667 12.33 5.68 35.78 4.17
547 586 5.347342 TGTGACTAACTTTGCCAAATGTTG 58.653 37.500 12.33 7.34 35.78 3.33
548 587 5.590530 TGTGACTAACTTTGCCAAATGTT 57.409 34.783 9.06 9.06 37.42 2.71
549 588 5.590530 TTGTGACTAACTTTGCCAAATGT 57.409 34.783 0.00 0.00 0.00 2.71
550 589 5.234116 GGTTTGTGACTAACTTTGCCAAATG 59.766 40.000 9.55 0.00 0.00 2.32
551 590 5.105146 TGGTTTGTGACTAACTTTGCCAAAT 60.105 36.000 9.55 0.00 0.00 2.32
552 591 4.220821 TGGTTTGTGACTAACTTTGCCAAA 59.779 37.500 9.55 0.00 0.00 3.28
553 592 3.764434 TGGTTTGTGACTAACTTTGCCAA 59.236 39.130 9.55 0.00 0.00 4.52
554 593 3.357203 TGGTTTGTGACTAACTTTGCCA 58.643 40.909 9.55 0.00 0.00 4.92
555 594 4.379339 TTGGTTTGTGACTAACTTTGCC 57.621 40.909 9.55 0.00 0.00 4.52
556 595 5.164954 TGTTTGGTTTGTGACTAACTTTGC 58.835 37.500 9.55 0.62 0.00 3.68
557 596 5.288472 GCTGTTTGGTTTGTGACTAACTTTG 59.712 40.000 9.55 0.00 0.00 2.77
558 597 5.407502 GCTGTTTGGTTTGTGACTAACTTT 58.592 37.500 9.55 0.00 0.00 2.66
559 598 4.142249 GGCTGTTTGGTTTGTGACTAACTT 60.142 41.667 9.55 0.00 0.00 2.66
560 599 3.380320 GGCTGTTTGGTTTGTGACTAACT 59.620 43.478 9.55 0.00 0.00 2.24
561 600 3.490249 GGGCTGTTTGGTTTGTGACTAAC 60.490 47.826 1.25 1.25 0.00 2.34
562 601 2.691011 GGGCTGTTTGGTTTGTGACTAA 59.309 45.455 0.00 0.00 0.00 2.24
563 602 2.303175 GGGCTGTTTGGTTTGTGACTA 58.697 47.619 0.00 0.00 0.00 2.59
564 603 1.111277 GGGCTGTTTGGTTTGTGACT 58.889 50.000 0.00 0.00 0.00 3.41
565 604 0.104120 GGGGCTGTTTGGTTTGTGAC 59.896 55.000 0.00 0.00 0.00 3.67
566 605 0.032615 AGGGGCTGTTTGGTTTGTGA 60.033 50.000 0.00 0.00 0.00 3.58
567 606 0.829990 AAGGGGCTGTTTGGTTTGTG 59.170 50.000 0.00 0.00 0.00 3.33
568 607 0.829990 CAAGGGGCTGTTTGGTTTGT 59.170 50.000 0.00 0.00 0.00 2.83
569 608 0.829990 ACAAGGGGCTGTTTGGTTTG 59.170 50.000 0.00 0.00 0.00 2.93
570 609 1.484653 GAACAAGGGGCTGTTTGGTTT 59.515 47.619 0.00 0.00 39.63 3.27
571 610 1.119684 GAACAAGGGGCTGTTTGGTT 58.880 50.000 0.00 0.00 39.63 3.67
572 611 0.261696 AGAACAAGGGGCTGTTTGGT 59.738 50.000 0.00 0.00 39.63 3.67
573 612 0.675633 CAGAACAAGGGGCTGTTTGG 59.324 55.000 0.00 0.00 39.63 3.28
574 613 0.675633 CCAGAACAAGGGGCTGTTTG 59.324 55.000 0.00 0.00 39.63 2.93
575 614 1.115326 GCCAGAACAAGGGGCTGTTT 61.115 55.000 0.00 0.00 44.32 2.83
576 615 1.531602 GCCAGAACAAGGGGCTGTT 60.532 57.895 0.00 0.00 44.32 3.16
577 616 2.116125 GCCAGAACAAGGGGCTGT 59.884 61.111 0.00 0.00 44.32 4.40
581 620 1.672356 CGACTGCCAGAACAAGGGG 60.672 63.158 0.00 0.00 0.00 4.79
582 621 1.672356 CCGACTGCCAGAACAAGGG 60.672 63.158 0.00 0.00 0.00 3.95
583 622 1.672356 CCCGACTGCCAGAACAAGG 60.672 63.158 0.00 0.00 0.00 3.61
584 623 1.672356 CCCCGACTGCCAGAACAAG 60.672 63.158 0.00 0.00 0.00 3.16
585 624 2.429930 CCCCGACTGCCAGAACAA 59.570 61.111 0.00 0.00 0.00 2.83
586 625 4.329545 GCCCCGACTGCCAGAACA 62.330 66.667 0.00 0.00 0.00 3.18
717 762 1.104630 GCCTAGCTAGTCTCCAACGT 58.895 55.000 19.31 0.00 0.00 3.99
721 766 3.843304 GCGCCTAGCTAGTCTCCA 58.157 61.111 19.31 0.00 44.04 3.86
764 817 2.362717 AGCGAGTATTAACTGAGGAGGC 59.637 50.000 0.00 0.00 35.56 4.70
829 901 2.822255 TCCGCGTATTTGCTGGGC 60.822 61.111 4.92 0.00 32.06 5.36
898 977 4.632153 CGAGGTAGTTAATGGGGATGAAG 58.368 47.826 0.00 0.00 0.00 3.02
918 997 0.317160 ATCACTGGAACGACTTGCGA 59.683 50.000 0.00 0.00 44.57 5.10
921 1000 2.661675 CACGTATCACTGGAACGACTTG 59.338 50.000 10.01 0.00 39.80 3.16
923 1002 1.402456 GCACGTATCACTGGAACGACT 60.402 52.381 10.01 0.00 39.80 4.18
929 1008 2.183300 GGCGCACGTATCACTGGA 59.817 61.111 10.83 0.00 0.00 3.86
930 1009 3.254654 CGGCGCACGTATCACTGG 61.255 66.667 10.83 0.00 37.93 4.00
934 1028 2.883730 GAAGCGGCGCACGTATCA 60.884 61.111 35.02 0.00 46.52 2.15
964 1058 0.108019 GGGGACTCCGTTGTTCTTGT 59.892 55.000 0.00 0.00 0.00 3.16
1206 1304 3.134127 GGTCGTGGCCAAGGATGC 61.134 66.667 19.08 6.84 0.00 3.91
1225 1323 3.122613 GCGCATTCATACATGCTCTAGTC 59.877 47.826 0.30 0.00 46.43 2.59
1312 1410 1.743321 GACCATCTCCTCCTCCAGCG 61.743 65.000 0.00 0.00 0.00 5.18
1482 1585 2.040359 GAGAGGGGGAAGGGGGAG 60.040 72.222 0.00 0.00 0.00 4.30
1483 1586 3.707189 GGAGAGGGGGAAGGGGGA 61.707 72.222 0.00 0.00 0.00 4.81
1484 1587 3.711782 AGGAGAGGGGGAAGGGGG 61.712 72.222 0.00 0.00 0.00 5.40
1485 1588 2.040359 GAGGAGAGGGGGAAGGGG 60.040 72.222 0.00 0.00 0.00 4.79
1486 1589 2.444895 CGAGGAGAGGGGGAAGGG 60.445 72.222 0.00 0.00 0.00 3.95
1487 1590 3.157949 GCGAGGAGAGGGGGAAGG 61.158 72.222 0.00 0.00 0.00 3.46
1488 1591 3.157949 GGCGAGGAGAGGGGGAAG 61.158 72.222 0.00 0.00 0.00 3.46
1489 1592 4.005978 TGGCGAGGAGAGGGGGAA 62.006 66.667 0.00 0.00 0.00 3.97
1490 1593 4.779733 GTGGCGAGGAGAGGGGGA 62.780 72.222 0.00 0.00 0.00 4.81
1503 1606 3.134127 GGCGGAGAATGTGGTGGC 61.134 66.667 0.00 0.00 0.00 5.01
1521 1626 1.128200 TGGATGGGTTCAGATACGGG 58.872 55.000 0.00 0.00 0.00 5.28
1671 1776 1.959226 CGACAGGTGGTTCGGGTTG 60.959 63.158 0.00 0.00 0.00 3.77
1711 1816 2.123342 GAGCGAGATGAAGATGTTCCG 58.877 52.381 0.00 0.00 0.00 4.30
1812 1917 4.161295 CAGAAGGCGGCGATCCCA 62.161 66.667 12.98 0.00 0.00 4.37
1911 2016 4.631773 TCGAAGACGGTCTCGGAT 57.368 55.556 21.24 5.25 41.39 4.18
2046 2151 0.316204 CACCGTACCTGAACTTCCGT 59.684 55.000 0.00 0.00 0.00 4.69
2140 2257 3.873910 TCTTGGGCTAGATAAAGTGTGC 58.126 45.455 0.00 0.00 0.00 4.57
2254 2528 2.030946 GCAACCTGCACTCTAATAAGCG 59.969 50.000 0.00 0.00 44.26 4.68
2314 2589 2.589492 CCAATCTCGCATCGTCGCC 61.589 63.158 0.00 0.00 0.00 5.54
2322 2597 1.741401 CCAGAACGCCAATCTCGCA 60.741 57.895 0.00 0.00 0.00 5.10
2337 2612 3.261580 TGCGTTGTACAGATTGATCCAG 58.738 45.455 0.00 0.00 0.00 3.86
2362 2637 3.622612 TCAATTCACCGTACATGCATCAG 59.377 43.478 0.00 0.00 0.00 2.90
2453 2728 1.098050 AAGCACCATCAAATCTCGCC 58.902 50.000 0.00 0.00 0.00 5.54
2460 2735 2.665165 AGGACACAAAGCACCATCAAA 58.335 42.857 0.00 0.00 0.00 2.69
2589 2864 9.579932 GAGGAATGGAAAAATAGTTAGATGGAT 57.420 33.333 0.00 0.00 0.00 3.41
2591 2866 8.752005 TGAGGAATGGAAAAATAGTTAGATGG 57.248 34.615 0.00 0.00 0.00 3.51
2592 2867 9.401058 ACTGAGGAATGGAAAAATAGTTAGATG 57.599 33.333 0.00 0.00 0.00 2.90
2595 2870 9.892130 AGTACTGAGGAATGGAAAAATAGTTAG 57.108 33.333 0.00 0.00 0.00 2.34
2597 2872 9.588096 AAAGTACTGAGGAATGGAAAAATAGTT 57.412 29.630 0.00 0.00 0.00 2.24
2598 2873 9.014297 CAAAGTACTGAGGAATGGAAAAATAGT 57.986 33.333 0.00 0.00 0.00 2.12
2599 2874 9.014297 ACAAAGTACTGAGGAATGGAAAAATAG 57.986 33.333 0.00 0.00 0.00 1.73
2602 2877 6.831353 TCACAAAGTACTGAGGAATGGAAAAA 59.169 34.615 0.00 0.00 0.00 1.94
2604 2879 5.935945 TCACAAAGTACTGAGGAATGGAAA 58.064 37.500 0.00 0.00 0.00 3.13
2605 2880 5.560722 TCACAAAGTACTGAGGAATGGAA 57.439 39.130 0.00 0.00 0.00 3.53
2606 2881 5.491070 CATCACAAAGTACTGAGGAATGGA 58.509 41.667 0.00 0.00 0.00 3.41
2607 2882 4.095483 GCATCACAAAGTACTGAGGAATGG 59.905 45.833 0.00 0.00 0.00 3.16
2608 2883 4.940046 AGCATCACAAAGTACTGAGGAATG 59.060 41.667 0.00 0.00 0.00 2.67
2609 2884 5.171339 AGCATCACAAAGTACTGAGGAAT 57.829 39.130 0.00 0.00 0.00 3.01
2610 2885 4.623932 AGCATCACAAAGTACTGAGGAA 57.376 40.909 0.00 0.00 0.00 3.36
2611 2886 4.623932 AAGCATCACAAAGTACTGAGGA 57.376 40.909 0.00 0.00 0.00 3.71
2612 2887 6.372659 ACATAAAGCATCACAAAGTACTGAGG 59.627 38.462 0.00 0.00 0.00 3.86
2613 2888 7.332926 AGACATAAAGCATCACAAAGTACTGAG 59.667 37.037 0.00 0.00 0.00 3.35
2614 2889 7.161404 AGACATAAAGCATCACAAAGTACTGA 58.839 34.615 0.00 0.00 0.00 3.41
2615 2890 7.369803 AGACATAAAGCATCACAAAGTACTG 57.630 36.000 0.00 0.00 0.00 2.74
2616 2891 8.936864 GTTAGACATAAAGCATCACAAAGTACT 58.063 33.333 0.00 0.00 0.00 2.73
2617 2892 8.717821 TGTTAGACATAAAGCATCACAAAGTAC 58.282 33.333 0.00 0.00 0.00 2.73
2618 2893 8.840833 TGTTAGACATAAAGCATCACAAAGTA 57.159 30.769 0.00 0.00 0.00 2.24
2619 2894 7.744087 TGTTAGACATAAAGCATCACAAAGT 57.256 32.000 0.00 0.00 0.00 2.66
2620 2895 9.630098 AAATGTTAGACATAAAGCATCACAAAG 57.370 29.630 0.00 0.00 37.97 2.77
2646 2921 6.207417 GCAGCCTAGAATAATAGGATTGCAAA 59.793 38.462 1.71 0.00 45.23 3.68
2657 2932 9.182214 CCAATTGTATATGCAGCCTAGAATAAT 57.818 33.333 4.43 0.00 0.00 1.28
2664 2940 4.263462 CCCTCCAATTGTATATGCAGCCTA 60.263 45.833 4.43 0.00 0.00 3.93
2672 2948 9.305555 CTGAATGAATTCCCTCCAATTGTATAT 57.694 33.333 4.43 0.00 35.97 0.86
2675 2951 6.377996 CACTGAATGAATTCCCTCCAATTGTA 59.622 38.462 4.43 0.00 35.97 2.41
2783 3059 4.717233 ACAAACAAGCAGATTTGTCACA 57.283 36.364 6.44 0.00 43.81 3.58
2784 3060 5.101628 TGAACAAACAAGCAGATTTGTCAC 58.898 37.500 11.23 9.64 45.86 3.67
2916 3192 1.523758 AATGTCAGAAGTGGTTCCGC 58.476 50.000 0.00 0.00 32.48 5.54
2982 3258 5.872617 TGTATCGGAAGTCGTCAAATGAATT 59.127 36.000 0.00 0.00 40.32 2.17
2984 3260 4.811908 TGTATCGGAAGTCGTCAAATGAA 58.188 39.130 0.00 0.00 40.32 2.57
2991 3267 4.206609 GCTACATTTGTATCGGAAGTCGTC 59.793 45.833 0.00 0.00 40.32 4.20
2993 3269 4.026804 GTGCTACATTTGTATCGGAAGTCG 60.027 45.833 0.00 0.00 40.90 4.18
2995 3271 4.189231 GGTGCTACATTTGTATCGGAAGT 58.811 43.478 0.00 0.00 0.00 3.01
3000 3276 3.266636 TGGTGGTGCTACATTTGTATCG 58.733 45.455 0.00 0.00 0.00 2.92
3005 3281 5.540911 AGAAAAATGGTGGTGCTACATTTG 58.459 37.500 0.00 0.00 42.21 2.32
3006 3282 5.806654 AGAAAAATGGTGGTGCTACATTT 57.193 34.783 0.00 0.00 44.18 2.32
3011 3288 4.650972 AGGTAGAAAAATGGTGGTGCTA 57.349 40.909 0.00 0.00 0.00 3.49
3028 3305 6.421801 GCTCGTCAGTTAAGTACAAAAAGGTA 59.578 38.462 0.00 0.00 0.00 3.08
3381 3899 4.436242 TCTTAGCTTACCAGTCAGTTCG 57.564 45.455 0.00 0.00 0.00 3.95
3405 3923 9.295825 TCAGAATACAGTTTAAATGTTGGACAT 57.704 29.630 2.78 0.00 41.31 3.06
3421 3940 6.621613 TGCACAAGTACTAGTCAGAATACAG 58.378 40.000 0.00 0.00 0.00 2.74
3423 3942 6.866770 TGTTGCACAAGTACTAGTCAGAATAC 59.133 38.462 0.00 0.00 0.00 1.89
3425 3944 5.853936 TGTTGCACAAGTACTAGTCAGAAT 58.146 37.500 0.00 0.00 0.00 2.40
3426 3945 5.270893 TGTTGCACAAGTACTAGTCAGAA 57.729 39.130 0.00 0.00 0.00 3.02
3427 3946 4.796290 GCTGTTGCACAAGTACTAGTCAGA 60.796 45.833 0.00 0.00 39.41 3.27
3428 3947 3.430218 GCTGTTGCACAAGTACTAGTCAG 59.570 47.826 0.00 0.00 39.41 3.51
3430 3949 3.390135 TGCTGTTGCACAAGTACTAGTC 58.610 45.455 0.00 0.00 45.31 2.59
3431 3950 3.469008 TGCTGTTGCACAAGTACTAGT 57.531 42.857 0.00 0.00 45.31 2.57
3480 4007 6.166279 ACTTGATGATCGACTGTTACAACAT 58.834 36.000 0.00 0.00 38.41 2.71
3502 4030 0.036022 GCTTCCTTGCACCTCTGACT 59.964 55.000 0.00 0.00 0.00 3.41
3582 4112 1.352017 TGGATGTGCACTTGTGATCCT 59.648 47.619 25.28 0.56 34.74 3.24
3677 4236 3.105959 ACCAGCCAATTAATCCAGCTT 57.894 42.857 4.55 0.00 0.00 3.74
3695 4254 0.250338 ACAAGAGGTCGAGGCAAACC 60.250 55.000 0.00 0.00 35.69 3.27
3783 4343 4.637276 ACACAACACCTTCATAACGATCA 58.363 39.130 0.00 0.00 0.00 2.92
3811 4371 7.085116 GCCACATACATGTAGTCAGTAGATAC 58.915 42.308 11.91 0.00 39.39 2.24
3813 4373 5.598417 TGCCACATACATGTAGTCAGTAGAT 59.402 40.000 11.91 0.00 39.39 1.98
3814 4374 4.953579 TGCCACATACATGTAGTCAGTAGA 59.046 41.667 11.91 0.00 39.39 2.59
3816 4376 5.669164 TTGCCACATACATGTAGTCAGTA 57.331 39.130 11.91 0.00 39.39 2.74
3819 4379 5.709631 ACATTTTGCCACATACATGTAGTCA 59.290 36.000 11.91 2.07 39.39 3.41
3820 4380 6.194796 ACATTTTGCCACATACATGTAGTC 57.805 37.500 11.91 0.00 39.39 2.59
3821 4381 7.880160 ATACATTTTGCCACATACATGTAGT 57.120 32.000 11.91 6.90 39.39 2.73
3822 4382 8.190122 ACAATACATTTTGCCACATACATGTAG 58.810 33.333 11.91 6.29 39.39 2.74
3823 4383 7.972832 CACAATACATTTTGCCACATACATGTA 59.027 33.333 8.27 8.27 39.39 2.29
3824 4384 6.812656 CACAATACATTTTGCCACATACATGT 59.187 34.615 2.69 2.69 42.84 3.21
3825 4385 6.812656 ACACAATACATTTTGCCACATACATG 59.187 34.615 0.00 0.00 0.00 3.21
3826 4386 6.812656 CACACAATACATTTTGCCACATACAT 59.187 34.615 0.00 0.00 0.00 2.29
3827 4387 6.155136 CACACAATACATTTTGCCACATACA 58.845 36.000 0.00 0.00 0.00 2.29
3828 4388 5.062058 GCACACAATACATTTTGCCACATAC 59.938 40.000 0.00 0.00 0.00 2.39
3861 4477 3.118629 ACATGACAAGTACCGCAGATCAT 60.119 43.478 0.00 0.00 0.00 2.45
3877 4493 9.104965 TGCTTATAAATTGTACCACTACATGAC 57.895 33.333 0.00 0.00 32.70 3.06
4009 5259 1.979855 TTCTAGCCAAGCTGTTGCAA 58.020 45.000 0.00 0.00 40.10 4.08
4010 5260 1.608590 GTTTCTAGCCAAGCTGTTGCA 59.391 47.619 0.00 0.00 40.10 4.08
4011 5261 1.608590 TGTTTCTAGCCAAGCTGTTGC 59.391 47.619 0.00 0.00 40.10 4.17
4012 5262 3.058639 GTCTGTTTCTAGCCAAGCTGTTG 60.059 47.826 0.00 0.00 40.10 3.33
4056 5314 8.192774 TCAAATACAGCATCTTTCAATGGATTC 58.807 33.333 0.00 0.00 0.00 2.52
4099 5359 5.841957 ATGAATGCCTTCAACTGATAACC 57.158 39.130 8.55 0.00 44.29 2.85
4131 5395 4.118410 GACCATGAGCAACAGAGATACAG 58.882 47.826 0.00 0.00 0.00 2.74
4316 5584 3.406764 GGACTGCATTTCTCACAAGAGT 58.593 45.455 0.00 0.00 42.66 3.24
4317 5585 2.746362 GGGACTGCATTTCTCACAAGAG 59.254 50.000 0.00 0.00 43.48 2.85
4348 5623 2.744202 GAGAAATGACAGGCACGTTCAT 59.256 45.455 4.65 0.00 36.49 2.57
4363 5638 0.998145 AGCTCTTGCCCAGGAGAAAT 59.002 50.000 11.09 0.00 40.80 2.17
4366 5641 1.892819 CGAAGCTCTTGCCCAGGAGA 61.893 60.000 11.09 0.00 40.80 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.