Multiple sequence alignment - TraesCS7B01G314300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G314300 chr7B 100.000 3714 0 0 1 3714 561373540 561369827 0.000000e+00 6859.0
1 TraesCS7B01G314300 chr7B 86.049 1068 136 9 974 2036 561139674 561138615 0.000000e+00 1134.0
2 TraesCS7B01G314300 chr7B 82.969 916 133 13 2028 2930 561135343 561134438 0.000000e+00 806.0
3 TraesCS7B01G314300 chr7B 91.065 526 42 2 3189 3714 377993790 377993270 0.000000e+00 706.0
4 TraesCS7B01G314300 chr7A 96.023 1383 53 2 1801 3182 605175534 605174153 0.000000e+00 2248.0
5 TraesCS7B01G314300 chr7A 85.054 2208 281 38 930 3113 604824802 604822620 0.000000e+00 2204.0
6 TraesCS7B01G314300 chr7A 96.343 875 26 1 930 1804 605176578 605175710 0.000000e+00 1434.0
7 TraesCS7B01G314300 chr7A 92.954 369 25 1 347 715 605178680 605178313 1.520000e-148 536.0
8 TraesCS7B01G314300 chr7A 89.583 192 20 0 132 323 605178938 605178747 1.030000e-60 244.0
9 TraesCS7B01G314300 chr7D 87.097 1209 139 14 930 2134 524871832 524870637 0.000000e+00 1352.0
10 TraesCS7B01G314300 chr7D 95.769 709 30 0 1204 1912 524993373 524992665 0.000000e+00 1144.0
11 TraesCS7B01G314300 chr7D 83.481 1017 148 14 2128 3130 524869013 524868003 0.000000e+00 929.0
12 TraesCS7B01G314300 chr7D 90.494 526 46 1 3189 3714 429023758 429023237 0.000000e+00 691.0
13 TraesCS7B01G314300 chr7D 92.506 387 28 1 347 733 525004406 525004021 1.510000e-153 553.0
14 TraesCS7B01G314300 chr7D 94.346 283 16 0 930 1212 525002322 525002040 5.700000e-118 435.0
15 TraesCS7B01G314300 chr7D 89.189 222 24 0 102 323 525004695 525004474 1.020000e-70 278.0
16 TraesCS7B01G314300 chr3D 92.015 526 42 0 3189 3714 359694836 359695361 0.000000e+00 739.0
17 TraesCS7B01G314300 chr3D 92.030 527 40 2 3189 3714 505430921 505430396 0.000000e+00 739.0
18 TraesCS7B01G314300 chr3D 91.065 526 43 1 3189 3714 514383152 514383673 0.000000e+00 708.0
19 TraesCS7B01G314300 chr3D 90.530 528 44 2 3189 3714 327239924 327240447 0.000000e+00 693.0
20 TraesCS7B01G314300 chr4D 90.304 526 49 2 3189 3714 335454058 335453535 0.000000e+00 688.0
21 TraesCS7B01G314300 chr2D 90.494 526 42 4 3189 3714 340354734 340354217 0.000000e+00 688.0
22 TraesCS7B01G314300 chr2D 89.869 533 52 2 3183 3714 230033033 230033564 0.000000e+00 684.0
23 TraesCS7B01G314300 chr5A 88.281 128 13 2 1109 1235 77791588 77791462 6.420000e-33 152.0
24 TraesCS7B01G314300 chr5A 85.185 135 18 2 1102 1235 34903680 34903813 1.800000e-28 137.0
25 TraesCS7B01G314300 chr5B 86.719 128 15 2 1109 1235 90183842 90183716 1.390000e-29 141.0
26 TraesCS7B01G314300 chr5B 84.444 135 19 2 1102 1235 43884300 43884433 8.370000e-27 132.0
27 TraesCS7B01G314300 chr5B 82.468 154 23 4 1102 1252 44231457 44231305 8.370000e-27 132.0
28 TraesCS7B01G314300 chr5D 85.938 128 16 2 1109 1235 81788560 81788434 6.470000e-28 135.0
29 TraesCS7B01G314300 chr5D 84.444 135 19 2 1102 1235 44488976 44489109 8.370000e-27 132.0
30 TraesCS7B01G314300 chr5D 82.090 134 24 0 1102 1235 273060653 273060786 8.430000e-22 115.0
31 TraesCS7B01G314300 chr5D 77.596 183 33 5 1146 1324 81736729 81736551 1.820000e-18 104.0
32 TraesCS7B01G314300 chr1D 76.763 241 36 17 1102 1326 475171805 475172041 2.340000e-22 117.0
33 TraesCS7B01G314300 chr1D 84.416 77 12 0 1146 1222 473623500 473623424 3.980000e-10 76.8
34 TraesCS7B01G314300 chr1A 82.812 128 18 4 1094 1218 570855839 570855965 1.090000e-20 111.0
35 TraesCS7B01G314300 chr1A 80.741 135 24 2 1102 1235 32191070 32191203 1.820000e-18 104.0
36 TraesCS7B01G314300 chr1A 79.861 144 21 8 1097 1235 519849029 519849169 8.490000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G314300 chr7B 561369827 561373540 3713 True 6859.0 6859 100.000000 1 3714 1 chr7B.!!$R2 3713
1 TraesCS7B01G314300 chr7B 561134438 561139674 5236 True 970.0 1134 84.509000 974 2930 2 chr7B.!!$R3 1956
2 TraesCS7B01G314300 chr7B 377993270 377993790 520 True 706.0 706 91.065000 3189 3714 1 chr7B.!!$R1 525
3 TraesCS7B01G314300 chr7A 604822620 604824802 2182 True 2204.0 2204 85.054000 930 3113 1 chr7A.!!$R1 2183
4 TraesCS7B01G314300 chr7A 605174153 605178938 4785 True 1115.5 2248 93.725750 132 3182 4 chr7A.!!$R2 3050
5 TraesCS7B01G314300 chr7D 524992665 524993373 708 True 1144.0 1144 95.769000 1204 1912 1 chr7D.!!$R2 708
6 TraesCS7B01G314300 chr7D 524868003 524871832 3829 True 1140.5 1352 85.289000 930 3130 2 chr7D.!!$R3 2200
7 TraesCS7B01G314300 chr7D 429023237 429023758 521 True 691.0 691 90.494000 3189 3714 1 chr7D.!!$R1 525
8 TraesCS7B01G314300 chr7D 525002040 525004695 2655 True 422.0 553 92.013667 102 1212 3 chr7D.!!$R4 1110
9 TraesCS7B01G314300 chr3D 359694836 359695361 525 False 739.0 739 92.015000 3189 3714 1 chr3D.!!$F2 525
10 TraesCS7B01G314300 chr3D 505430396 505430921 525 True 739.0 739 92.030000 3189 3714 1 chr3D.!!$R1 525
11 TraesCS7B01G314300 chr3D 514383152 514383673 521 False 708.0 708 91.065000 3189 3714 1 chr3D.!!$F3 525
12 TraesCS7B01G314300 chr3D 327239924 327240447 523 False 693.0 693 90.530000 3189 3714 1 chr3D.!!$F1 525
13 TraesCS7B01G314300 chr4D 335453535 335454058 523 True 688.0 688 90.304000 3189 3714 1 chr4D.!!$R1 525
14 TraesCS7B01G314300 chr2D 340354217 340354734 517 True 688.0 688 90.494000 3189 3714 1 chr2D.!!$R1 525
15 TraesCS7B01G314300 chr2D 230033033 230033564 531 False 684.0 684 89.869000 3183 3714 1 chr2D.!!$F1 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
857 2418 0.261991 CACAGTAGGGGAGGCTCCTA 59.738 60.0 31.39 15.49 36.57 2.94 F
1563 3153 1.160329 GCACCGGCTACATGATCCAC 61.160 60.0 0.00 0.00 36.96 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1925 3694 0.385390 AAGCTTGCCTTTGGTGAACG 59.615 50.0 0.0 0.0 0.0 3.95 R
3183 9887 0.105039 GTCTCGCATCCTACCCTTGG 59.895 60.0 0.0 0.0 0.0 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.771114 TGACAAAGACAAAGGAGGAAGA 57.229 40.909 0.00 0.00 0.00 2.87
22 23 5.310409 TGACAAAGACAAAGGAGGAAGAT 57.690 39.130 0.00 0.00 0.00 2.40
23 24 5.065914 TGACAAAGACAAAGGAGGAAGATG 58.934 41.667 0.00 0.00 0.00 2.90
24 25 5.163205 TGACAAAGACAAAGGAGGAAGATGA 60.163 40.000 0.00 0.00 0.00 2.92
25 26 5.885465 ACAAAGACAAAGGAGGAAGATGAT 58.115 37.500 0.00 0.00 0.00 2.45
26 27 5.709164 ACAAAGACAAAGGAGGAAGATGATG 59.291 40.000 0.00 0.00 0.00 3.07
27 28 5.768980 AAGACAAAGGAGGAAGATGATGA 57.231 39.130 0.00 0.00 0.00 2.92
28 29 5.768980 AGACAAAGGAGGAAGATGATGAA 57.231 39.130 0.00 0.00 0.00 2.57
29 30 5.495640 AGACAAAGGAGGAAGATGATGAAC 58.504 41.667 0.00 0.00 0.00 3.18
30 31 5.013495 AGACAAAGGAGGAAGATGATGAACA 59.987 40.000 0.00 0.00 0.00 3.18
31 32 5.006386 ACAAAGGAGGAAGATGATGAACAC 58.994 41.667 0.00 0.00 0.00 3.32
32 33 5.222007 ACAAAGGAGGAAGATGATGAACACT 60.222 40.000 0.00 0.00 0.00 3.55
33 34 4.484537 AGGAGGAAGATGATGAACACTG 57.515 45.455 0.00 0.00 0.00 3.66
34 35 4.099633 AGGAGGAAGATGATGAACACTGA 58.900 43.478 0.00 0.00 0.00 3.41
35 36 4.533707 AGGAGGAAGATGATGAACACTGAA 59.466 41.667 0.00 0.00 0.00 3.02
36 37 4.633565 GGAGGAAGATGATGAACACTGAAC 59.366 45.833 0.00 0.00 0.00 3.18
37 38 4.248859 AGGAAGATGATGAACACTGAACG 58.751 43.478 0.00 0.00 0.00 3.95
38 39 3.372206 GGAAGATGATGAACACTGAACGG 59.628 47.826 0.00 0.00 0.00 4.44
39 40 3.961480 AGATGATGAACACTGAACGGA 57.039 42.857 0.00 0.00 0.00 4.69
40 41 4.271696 AGATGATGAACACTGAACGGAA 57.728 40.909 0.00 0.00 0.00 4.30
41 42 4.248859 AGATGATGAACACTGAACGGAAG 58.751 43.478 0.00 0.00 0.00 3.46
55 56 3.753294 ACGGAAGTCATGAAACAGAGT 57.247 42.857 0.00 0.00 44.19 3.24
56 57 4.866508 ACGGAAGTCATGAAACAGAGTA 57.133 40.909 0.00 0.00 44.19 2.59
57 58 5.407407 ACGGAAGTCATGAAACAGAGTAT 57.593 39.130 0.00 0.00 44.19 2.12
58 59 5.171476 ACGGAAGTCATGAAACAGAGTATG 58.829 41.667 0.00 0.00 44.19 2.39
59 60 5.171476 CGGAAGTCATGAAACAGAGTATGT 58.829 41.667 0.00 0.00 46.97 2.29
60 61 6.071560 ACGGAAGTCATGAAACAGAGTATGTA 60.072 38.462 0.00 0.00 44.19 2.29
61 62 6.811665 CGGAAGTCATGAAACAGAGTATGTAA 59.188 38.462 0.00 0.00 43.00 2.41
62 63 7.201444 CGGAAGTCATGAAACAGAGTATGTAAC 60.201 40.741 0.00 0.00 43.00 2.50
63 64 7.602644 GGAAGTCATGAAACAGAGTATGTAACA 59.397 37.037 0.00 0.00 43.00 2.41
64 65 9.155975 GAAGTCATGAAACAGAGTATGTAACAT 57.844 33.333 0.00 0.00 43.00 2.71
68 69 9.936759 TCATGAAACAGAGTATGTAACATAACA 57.063 29.630 0.00 0.00 43.00 2.41
70 71 8.771920 TGAAACAGAGTATGTAACATAACAGG 57.228 34.615 0.00 0.00 43.00 4.00
71 72 8.590204 TGAAACAGAGTATGTAACATAACAGGA 58.410 33.333 0.00 0.00 43.00 3.86
72 73 9.088512 GAAACAGAGTATGTAACATAACAGGAG 57.911 37.037 0.00 0.00 43.00 3.69
73 74 6.574350 ACAGAGTATGTAACATAACAGGAGC 58.426 40.000 0.00 0.00 41.60 4.70
74 75 6.381420 ACAGAGTATGTAACATAACAGGAGCT 59.619 38.462 0.00 0.00 41.60 4.09
75 76 6.699204 CAGAGTATGTAACATAACAGGAGCTG 59.301 42.308 0.00 0.00 37.52 4.24
77 78 7.560262 AGAGTATGTAACATAACAGGAGCTGTA 59.440 37.037 0.00 0.00 44.62 2.74
78 79 7.717568 AGTATGTAACATAACAGGAGCTGTAG 58.282 38.462 0.00 0.00 44.62 2.74
79 80 5.339008 TGTAACATAACAGGAGCTGTAGG 57.661 43.478 0.00 0.00 44.62 3.18
80 81 5.020795 TGTAACATAACAGGAGCTGTAGGA 58.979 41.667 0.00 0.00 44.62 2.94
81 82 5.661312 TGTAACATAACAGGAGCTGTAGGAT 59.339 40.000 0.00 0.00 44.62 3.24
82 83 6.837048 TGTAACATAACAGGAGCTGTAGGATA 59.163 38.462 0.00 0.00 44.62 2.59
83 84 5.793030 ACATAACAGGAGCTGTAGGATAC 57.207 43.478 0.00 0.00 44.62 2.24
84 85 4.278669 ACATAACAGGAGCTGTAGGATACG 59.721 45.833 0.00 0.00 46.99 3.06
85 86 1.033574 ACAGGAGCTGTAGGATACGC 58.966 55.000 0.00 0.00 46.99 4.42
86 87 1.032794 CAGGAGCTGTAGGATACGCA 58.967 55.000 0.00 0.00 46.99 5.24
87 88 1.033574 AGGAGCTGTAGGATACGCAC 58.966 55.000 0.00 1.77 46.99 5.34
88 89 0.744874 GGAGCTGTAGGATACGCACA 59.255 55.000 0.00 0.00 46.99 4.57
89 90 1.341531 GGAGCTGTAGGATACGCACAT 59.658 52.381 0.00 0.00 46.99 3.21
90 91 2.398498 GAGCTGTAGGATACGCACATG 58.602 52.381 0.00 0.00 46.99 3.21
91 92 1.757118 AGCTGTAGGATACGCACATGT 59.243 47.619 0.00 0.00 46.99 3.21
92 93 2.956333 AGCTGTAGGATACGCACATGTA 59.044 45.455 0.00 0.00 46.99 2.29
93 94 3.004839 AGCTGTAGGATACGCACATGTAG 59.995 47.826 0.00 0.00 46.99 2.74
94 95 3.004419 GCTGTAGGATACGCACATGTAGA 59.996 47.826 0.00 0.00 46.99 2.59
95 96 4.788690 CTGTAGGATACGCACATGTAGAG 58.211 47.826 0.00 0.00 46.99 2.43
96 97 4.457466 TGTAGGATACGCACATGTAGAGA 58.543 43.478 0.00 0.00 46.99 3.10
97 98 4.515567 TGTAGGATACGCACATGTAGAGAG 59.484 45.833 0.00 0.00 46.99 3.20
98 99 3.821748 AGGATACGCACATGTAGAGAGA 58.178 45.455 0.00 0.00 46.39 3.10
99 100 4.402829 AGGATACGCACATGTAGAGAGAT 58.597 43.478 0.00 0.00 46.39 2.75
100 101 4.217334 AGGATACGCACATGTAGAGAGATG 59.783 45.833 0.00 0.00 46.39 2.90
108 109 6.918022 CGCACATGTAGAGAGATGTATAACAA 59.082 38.462 0.00 0.00 37.46 2.83
113 114 7.584122 TGTAGAGAGATGTATAACAAGGGTC 57.416 40.000 0.00 0.00 0.00 4.46
115 116 4.585162 AGAGAGATGTATAACAAGGGTCCG 59.415 45.833 0.00 0.00 0.00 4.79
117 118 2.104281 AGATGTATAACAAGGGTCCGCC 59.896 50.000 0.00 0.00 0.00 6.13
124 125 1.294138 CAAGGGTCCGCCGACTTAA 59.706 57.895 5.18 0.00 39.15 1.85
129 130 1.217882 GGTCCGCCGACTTAATCATG 58.782 55.000 5.18 0.00 39.15 3.07
175 176 8.800031 GTCTCGTATTCAGACAGTTAAAGAATC 58.200 37.037 0.00 0.00 40.18 2.52
177 178 9.360093 CTCGTATTCAGACAGTTAAAGAATCTT 57.640 33.333 0.00 0.00 31.89 2.40
223 224 1.476074 CAAACATGTGCACGAACCAC 58.524 50.000 13.13 0.00 0.00 4.16
225 226 0.812014 AACATGTGCACGAACCACGA 60.812 50.000 13.13 0.00 45.77 4.35
228 229 2.958016 GTGCACGAACCACGACGT 60.958 61.111 0.00 0.00 45.77 4.34
260 261 2.908073 CGGGAGTTTGTGCAGGTGC 61.908 63.158 0.00 0.00 42.50 5.01
265 266 3.898509 TTTGTGCAGGTGCGTGCC 61.899 61.111 13.27 6.45 45.83 5.01
279 280 3.427425 TGCCCGTGCGAATTTCCG 61.427 61.111 0.00 0.00 41.78 4.30
323 324 0.647410 CATTGTGCTAACGAGGCTCG 59.353 55.000 33.42 33.42 46.93 5.03
324 325 0.530744 ATTGTGCTAACGAGGCTCGA 59.469 50.000 40.35 20.26 43.74 4.04
341 371 4.286910 GCTCGACTAGATCATGTGAGTTC 58.713 47.826 0.00 0.00 0.00 3.01
342 372 4.036262 GCTCGACTAGATCATGTGAGTTCT 59.964 45.833 0.00 0.00 0.00 3.01
343 373 5.491635 TCGACTAGATCATGTGAGTTCTG 57.508 43.478 0.00 0.00 0.00 3.02
344 374 4.041049 CGACTAGATCATGTGAGTTCTGC 58.959 47.826 0.00 0.00 0.00 4.26
351 396 5.641209 AGATCATGTGAGTTCTGCTTAACAC 59.359 40.000 0.00 0.00 30.34 3.32
354 399 2.872245 TGTGAGTTCTGCTTAACACTGC 59.128 45.455 0.00 0.00 0.00 4.40
448 493 0.896226 AGTACGAGTTCTCAAGCCCC 59.104 55.000 0.00 0.00 0.00 5.80
479 524 4.216257 GTGTGTGTACTCTTTAGGTCGGTA 59.784 45.833 0.00 0.00 0.00 4.02
495 540 4.261741 GGTCGGTAGGTTTGCGAAGATATA 60.262 45.833 0.00 0.00 0.00 0.86
499 544 5.120208 CGGTAGGTTTGCGAAGATATATTGG 59.880 44.000 0.00 0.00 0.00 3.16
516 561 9.393512 GATATATTGGAGAAGCTTGCAGAATAT 57.606 33.333 2.10 9.21 0.00 1.28
574 619 3.823304 GGCTCTACCATTTGATGATTCCC 59.177 47.826 0.00 0.00 38.86 3.97
605 650 7.931407 GTGATTTTAAAAACTGGATGGAGGTTT 59.069 33.333 4.44 0.00 34.18 3.27
606 651 8.490311 TGATTTTAAAAACTGGATGGAGGTTTT 58.510 29.630 4.44 0.00 43.66 2.43
635 680 5.410746 AGAATGTGTGAGAGCTATTGTTGTG 59.589 40.000 0.00 0.00 0.00 3.33
644 689 4.825546 AGCTATTGTTGTGCTCATATGC 57.174 40.909 0.00 0.00 30.41 3.14
647 692 4.974275 GCTATTGTTGTGCTCATATGCAAG 59.026 41.667 0.00 0.00 45.12 4.01
685 730 1.135603 CATGTCCAATGGTCGCACAAG 60.136 52.381 0.00 0.00 0.00 3.16
734 784 8.576442 TCTGATCAACTAAAAAGTGAATTTCCC 58.424 33.333 0.00 0.00 0.00 3.97
736 786 8.576442 TGATCAACTAAAAAGTGAATTTCCCTC 58.424 33.333 0.00 0.00 0.00 4.30
737 787 6.966021 TCAACTAAAAAGTGAATTTCCCTCG 58.034 36.000 0.00 0.00 0.00 4.63
738 788 5.372547 ACTAAAAAGTGAATTTCCCTCGC 57.627 39.130 0.00 0.00 0.00 5.03
850 2411 3.981071 TGACAAATCACAGTAGGGGAG 57.019 47.619 0.00 0.00 0.00 4.30
851 2412 2.571653 TGACAAATCACAGTAGGGGAGG 59.428 50.000 0.00 0.00 0.00 4.30
852 2413 1.282157 ACAAATCACAGTAGGGGAGGC 59.718 52.381 0.00 0.00 0.00 4.70
853 2414 1.561542 CAAATCACAGTAGGGGAGGCT 59.438 52.381 0.00 0.00 0.00 4.58
854 2415 1.501582 AATCACAGTAGGGGAGGCTC 58.498 55.000 5.78 5.78 0.00 4.70
855 2416 0.399233 ATCACAGTAGGGGAGGCTCC 60.399 60.000 25.80 25.80 35.23 4.70
856 2417 1.002274 CACAGTAGGGGAGGCTCCT 59.998 63.158 31.39 16.58 36.57 3.69
857 2418 0.261991 CACAGTAGGGGAGGCTCCTA 59.738 60.000 31.39 15.49 36.57 2.94
862 2423 2.225715 TAGGGGAGGCTCCTACTACT 57.774 55.000 31.39 21.94 36.57 2.57
877 2438 4.586841 CCTACTACTGCTGAGAGGCTAAAT 59.413 45.833 0.00 0.00 0.00 1.40
878 2439 4.399004 ACTACTGCTGAGAGGCTAAATG 57.601 45.455 0.00 0.00 0.00 2.32
879 2440 2.706339 ACTGCTGAGAGGCTAAATGG 57.294 50.000 0.00 0.00 0.00 3.16
881 2442 2.776536 ACTGCTGAGAGGCTAAATGGAT 59.223 45.455 0.00 0.00 0.00 3.41
882 2443 3.181456 ACTGCTGAGAGGCTAAATGGATC 60.181 47.826 0.00 0.00 0.00 3.36
884 2445 3.457380 TGCTGAGAGGCTAAATGGATCTT 59.543 43.478 0.00 0.00 0.00 2.40
888 2449 6.459435 GCTGAGAGGCTAAATGGATCTTTTTC 60.459 42.308 0.00 0.00 0.00 2.29
898 2461 6.830873 AATGGATCTTTTTCTGTCCTTCAG 57.169 37.500 0.00 0.00 44.85 3.02
1143 2733 2.103538 GACGTTCTCCGGCGCATA 59.896 61.111 10.83 0.00 42.24 3.14
1533 3123 1.951923 TACCCGCCCTCCACATCCTA 61.952 60.000 0.00 0.00 0.00 2.94
1563 3153 1.160329 GCACCGGCTACATGATCCAC 61.160 60.000 0.00 0.00 36.96 4.02
1804 3573 4.619973 TGAACCAGATGAATTGTTGCAAC 58.380 39.130 22.83 22.83 0.00 4.17
1970 3739 4.666512 ACAAATGTTCTTCAGGTAGCCAT 58.333 39.130 0.00 0.00 0.00 4.40
2276 8968 0.687354 GCCCATCATCCCTATGTCGT 59.313 55.000 0.00 0.00 34.50 4.34
2597 9289 6.430000 GGTTTCTCAAGGTGCTCAGTTTAATA 59.570 38.462 0.00 0.00 0.00 0.98
2655 9347 1.142262 TGGGCACATCCATGATCTGAG 59.858 52.381 0.00 0.00 36.21 3.35
2664 9356 2.101415 TCCATGATCTGAGTGTTAGCGG 59.899 50.000 0.00 0.00 0.00 5.52
2729 9421 4.404073 TCCTTTGAGATACTCTTGGCTCTC 59.596 45.833 0.00 0.00 35.72 3.20
2758 9450 3.891977 TCATTTCACGGTTTGGGAAATCA 59.108 39.130 2.29 0.00 38.74 2.57
2920 9615 4.462483 TCCCAATTTAGACAATGGAGTTGC 59.538 41.667 0.00 0.00 41.69 4.17
2942 9637 3.806521 CCAGAGTTCTGTGACTGTTTCTG 59.193 47.826 8.23 10.81 42.27 3.02
2955 9650 3.044986 CTGTTTCTGCCATTGTCGTTTG 58.955 45.455 0.00 0.00 0.00 2.93
3048 9752 1.630369 ACACATCCACATACCACAGCT 59.370 47.619 0.00 0.00 0.00 4.24
3113 9817 4.479619 GCCACTATTTCTCACTTTGCTTG 58.520 43.478 0.00 0.00 0.00 4.01
3135 9839 6.902224 TGTGATCATTTCAGTTACGTATGG 57.098 37.500 0.00 0.00 34.17 2.74
3146 9850 8.836268 TTCAGTTACGTATGGTTACTTTTCAT 57.164 30.769 0.00 0.00 36.42 2.57
3182 9886 7.862873 TGCATATGTATATAGCAGCGATACTTC 59.137 37.037 4.29 3.13 0.00 3.01
3183 9887 7.327275 GCATATGTATATAGCAGCGATACTTCC 59.673 40.741 4.29 0.00 0.00 3.46
3184 9888 5.578005 TGTATATAGCAGCGATACTTCCC 57.422 43.478 13.24 0.00 0.00 3.97
3185 9889 5.014202 TGTATATAGCAGCGATACTTCCCA 58.986 41.667 13.24 0.00 0.00 4.37
3186 9890 5.479027 TGTATATAGCAGCGATACTTCCCAA 59.521 40.000 13.24 0.00 0.00 4.12
3187 9891 2.890808 TAGCAGCGATACTTCCCAAG 57.109 50.000 0.00 0.00 0.00 3.61
3227 9931 0.952984 GAGCGAGGAAGCAAGCAAGT 60.953 55.000 0.00 0.00 40.15 3.16
3252 9956 3.055747 GCGGCTATAGCTTAGGAAGGAAT 60.056 47.826 23.53 0.00 41.70 3.01
3271 9979 6.620429 AGGAATTAAGGAAGGAGGAAACAAA 58.380 36.000 0.00 0.00 0.00 2.83
3273 9981 6.719829 GGAATTAAGGAAGGAGGAAACAAAGA 59.280 38.462 0.00 0.00 0.00 2.52
3343 10053 2.560105 GGGTAGATATTTCGGCGGTAGT 59.440 50.000 7.21 0.00 0.00 2.73
3405 10116 0.852777 CGTCGGACACTGTTCACTTG 59.147 55.000 9.10 0.00 0.00 3.16
3447 10158 2.000447 ACGATTCTTCTGCTTTACGCC 59.000 47.619 0.00 0.00 38.05 5.68
3448 10159 2.271800 CGATTCTTCTGCTTTACGCCT 58.728 47.619 0.00 0.00 38.05 5.52
3517 10228 2.303022 ACTGTCCTCATCCACGTCATTT 59.697 45.455 0.00 0.00 0.00 2.32
3546 10257 5.888691 TTAACATCGCTTGCTAATTTGGA 57.111 34.783 0.00 0.00 0.00 3.53
3551 10262 3.081061 TCGCTTGCTAATTTGGACACAT 58.919 40.909 0.00 0.00 0.00 3.21
3565 10276 4.827692 TGGACACATAAAAGAGCGTACAT 58.172 39.130 0.00 0.00 0.00 2.29
3627 10338 7.961326 AATTAAACAGAGCCAATTGACCTAT 57.039 32.000 7.12 0.00 0.00 2.57
3637 10348 4.022849 GCCAATTGACCTATACATTGCTCC 60.023 45.833 7.12 0.00 0.00 4.70
3686 10397 9.730420 CAAAGCCTAAGTACGCATAATTTTAAT 57.270 29.630 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.771114 TCTTCCTCCTTTGTCTTTGTCA 57.229 40.909 0.00 0.00 0.00 3.58
1 2 5.308825 TCATCTTCCTCCTTTGTCTTTGTC 58.691 41.667 0.00 0.00 0.00 3.18
5 6 5.768980 TCATCATCTTCCTCCTTTGTCTT 57.231 39.130 0.00 0.00 0.00 3.01
6 7 5.013495 TGTTCATCATCTTCCTCCTTTGTCT 59.987 40.000 0.00 0.00 0.00 3.41
8 9 5.006386 GTGTTCATCATCTTCCTCCTTTGT 58.994 41.667 0.00 0.00 0.00 2.83
10 11 5.013495 TCAGTGTTCATCATCTTCCTCCTTT 59.987 40.000 0.00 0.00 0.00 3.11
11 12 4.533707 TCAGTGTTCATCATCTTCCTCCTT 59.466 41.667 0.00 0.00 0.00 3.36
12 13 4.099633 TCAGTGTTCATCATCTTCCTCCT 58.900 43.478 0.00 0.00 0.00 3.69
13 14 4.478206 TCAGTGTTCATCATCTTCCTCC 57.522 45.455 0.00 0.00 0.00 4.30
14 15 4.328440 CGTTCAGTGTTCATCATCTTCCTC 59.672 45.833 0.00 0.00 0.00 3.71
15 16 4.248859 CGTTCAGTGTTCATCATCTTCCT 58.751 43.478 0.00 0.00 0.00 3.36
16 17 3.372206 CCGTTCAGTGTTCATCATCTTCC 59.628 47.826 0.00 0.00 0.00 3.46
17 18 4.245660 TCCGTTCAGTGTTCATCATCTTC 58.754 43.478 0.00 0.00 0.00 2.87
18 19 4.271696 TCCGTTCAGTGTTCATCATCTT 57.728 40.909 0.00 0.00 0.00 2.40
19 20 3.961480 TCCGTTCAGTGTTCATCATCT 57.039 42.857 0.00 0.00 0.00 2.90
20 21 3.997021 ACTTCCGTTCAGTGTTCATCATC 59.003 43.478 0.00 0.00 0.00 2.92
21 22 3.997021 GACTTCCGTTCAGTGTTCATCAT 59.003 43.478 0.00 0.00 0.00 2.45
22 23 3.181470 TGACTTCCGTTCAGTGTTCATCA 60.181 43.478 0.00 0.00 0.00 3.07
23 24 3.390135 TGACTTCCGTTCAGTGTTCATC 58.610 45.455 0.00 0.00 0.00 2.92
24 25 3.469008 TGACTTCCGTTCAGTGTTCAT 57.531 42.857 0.00 0.00 0.00 2.57
25 26 2.971660 TGACTTCCGTTCAGTGTTCA 57.028 45.000 0.00 0.00 0.00 3.18
26 27 3.390135 TCATGACTTCCGTTCAGTGTTC 58.610 45.455 0.00 0.00 0.00 3.18
27 28 3.469008 TCATGACTTCCGTTCAGTGTT 57.531 42.857 0.00 0.00 0.00 3.32
28 29 3.469008 TTCATGACTTCCGTTCAGTGT 57.531 42.857 0.00 0.00 0.00 3.55
29 30 3.559655 TGTTTCATGACTTCCGTTCAGTG 59.440 43.478 0.00 0.00 0.00 3.66
30 31 3.804036 TGTTTCATGACTTCCGTTCAGT 58.196 40.909 0.00 0.00 0.00 3.41
31 32 4.058124 TCTGTTTCATGACTTCCGTTCAG 58.942 43.478 0.00 0.00 0.00 3.02
32 33 4.058124 CTCTGTTTCATGACTTCCGTTCA 58.942 43.478 0.00 0.00 0.00 3.18
33 34 4.058817 ACTCTGTTTCATGACTTCCGTTC 58.941 43.478 0.00 0.00 0.00 3.95
34 35 4.073293 ACTCTGTTTCATGACTTCCGTT 57.927 40.909 0.00 0.00 0.00 4.44
35 36 3.753294 ACTCTGTTTCATGACTTCCGT 57.247 42.857 0.00 0.00 0.00 4.69
36 37 5.171476 ACATACTCTGTTTCATGACTTCCG 58.829 41.667 0.00 0.00 32.90 4.30
37 38 7.602644 TGTTACATACTCTGTTTCATGACTTCC 59.397 37.037 0.00 0.00 39.39 3.46
38 39 8.534333 TGTTACATACTCTGTTTCATGACTTC 57.466 34.615 0.00 0.00 39.39 3.01
42 43 9.936759 TGTTATGTTACATACTCTGTTTCATGA 57.063 29.630 4.35 0.00 39.39 3.07
44 45 9.383519 CCTGTTATGTTACATACTCTGTTTCAT 57.616 33.333 4.35 0.00 39.39 2.57
45 46 8.590204 TCCTGTTATGTTACATACTCTGTTTCA 58.410 33.333 4.35 0.00 39.39 2.69
46 47 8.997621 TCCTGTTATGTTACATACTCTGTTTC 57.002 34.615 4.35 0.00 39.39 2.78
47 48 7.549488 GCTCCTGTTATGTTACATACTCTGTTT 59.451 37.037 4.35 0.00 39.39 2.83
48 49 7.042335 GCTCCTGTTATGTTACATACTCTGTT 58.958 38.462 4.35 0.00 39.39 3.16
49 50 6.381420 AGCTCCTGTTATGTTACATACTCTGT 59.619 38.462 4.35 0.00 42.13 3.41
50 51 6.699204 CAGCTCCTGTTATGTTACATACTCTG 59.301 42.308 4.35 5.82 0.00 3.35
51 52 6.381420 ACAGCTCCTGTTATGTTACATACTCT 59.619 38.462 4.35 0.00 42.59 3.24
52 53 6.574350 ACAGCTCCTGTTATGTTACATACTC 58.426 40.000 4.35 2.70 42.59 2.59
53 54 6.546428 ACAGCTCCTGTTATGTTACATACT 57.454 37.500 4.35 0.00 42.59 2.12
54 55 6.924060 CCTACAGCTCCTGTTATGTTACATAC 59.076 42.308 4.35 1.93 42.59 2.39
55 56 6.837048 TCCTACAGCTCCTGTTATGTTACATA 59.163 38.462 0.29 0.29 42.59 2.29
56 57 5.661312 TCCTACAGCTCCTGTTATGTTACAT 59.339 40.000 2.58 2.58 42.59 2.29
57 58 5.020795 TCCTACAGCTCCTGTTATGTTACA 58.979 41.667 2.93 0.00 42.59 2.41
58 59 5.593679 TCCTACAGCTCCTGTTATGTTAC 57.406 43.478 2.93 0.00 42.59 2.50
59 60 6.016527 CGTATCCTACAGCTCCTGTTATGTTA 60.017 42.308 2.93 0.00 42.59 2.41
60 61 5.221263 CGTATCCTACAGCTCCTGTTATGTT 60.221 44.000 2.93 0.00 42.59 2.71
61 62 4.278669 CGTATCCTACAGCTCCTGTTATGT 59.721 45.833 2.93 0.00 42.59 2.29
62 63 4.799678 CGTATCCTACAGCTCCTGTTATG 58.200 47.826 2.93 0.00 42.59 1.90
63 64 3.256136 GCGTATCCTACAGCTCCTGTTAT 59.744 47.826 2.93 0.00 42.59 1.89
64 65 2.621998 GCGTATCCTACAGCTCCTGTTA 59.378 50.000 2.93 0.00 42.59 2.41
65 66 1.409427 GCGTATCCTACAGCTCCTGTT 59.591 52.381 2.93 0.00 42.59 3.16
67 68 1.032794 TGCGTATCCTACAGCTCCTG 58.967 55.000 0.00 0.00 37.52 3.86
68 69 1.033574 GTGCGTATCCTACAGCTCCT 58.966 55.000 0.00 0.00 32.30 3.69
69 70 0.744874 TGTGCGTATCCTACAGCTCC 59.255 55.000 0.00 0.00 32.30 4.70
70 71 2.223829 ACATGTGCGTATCCTACAGCTC 60.224 50.000 0.00 0.00 32.30 4.09
71 72 1.757118 ACATGTGCGTATCCTACAGCT 59.243 47.619 0.00 0.00 32.30 4.24
72 73 2.225068 ACATGTGCGTATCCTACAGC 57.775 50.000 0.00 0.00 0.00 4.40
73 74 4.515567 TCTCTACATGTGCGTATCCTACAG 59.484 45.833 9.11 0.00 0.00 2.74
74 75 4.457466 TCTCTACATGTGCGTATCCTACA 58.543 43.478 9.11 0.00 0.00 2.74
75 76 4.755629 TCTCTCTACATGTGCGTATCCTAC 59.244 45.833 9.11 0.00 0.00 3.18
76 77 4.969484 TCTCTCTACATGTGCGTATCCTA 58.031 43.478 9.11 0.00 0.00 2.94
77 78 3.821748 TCTCTCTACATGTGCGTATCCT 58.178 45.455 9.11 0.00 0.00 3.24
78 79 4.022762 ACATCTCTCTACATGTGCGTATCC 60.023 45.833 9.11 0.00 31.80 2.59
79 80 5.114785 ACATCTCTCTACATGTGCGTATC 57.885 43.478 9.11 0.00 31.80 2.24
80 81 6.825944 ATACATCTCTCTACATGTGCGTAT 57.174 37.500 9.11 1.31 34.92 3.06
81 82 7.227910 TGTTATACATCTCTCTACATGTGCGTA 59.772 37.037 9.11 0.00 34.92 4.42
82 83 6.039382 TGTTATACATCTCTCTACATGTGCGT 59.961 38.462 9.11 0.00 34.92 5.24
83 84 6.438763 TGTTATACATCTCTCTACATGTGCG 58.561 40.000 9.11 0.00 34.92 5.34
84 85 7.383572 CCTTGTTATACATCTCTCTACATGTGC 59.616 40.741 9.11 0.00 34.92 4.57
85 86 7.869937 CCCTTGTTATACATCTCTCTACATGTG 59.130 40.741 9.11 0.00 34.92 3.21
86 87 7.565398 ACCCTTGTTATACATCTCTCTACATGT 59.435 37.037 2.69 2.69 37.08 3.21
87 88 7.957002 ACCCTTGTTATACATCTCTCTACATG 58.043 38.462 0.00 0.00 0.00 3.21
88 89 7.233757 GGACCCTTGTTATACATCTCTCTACAT 59.766 40.741 0.00 0.00 0.00 2.29
89 90 6.550108 GGACCCTTGTTATACATCTCTCTACA 59.450 42.308 0.00 0.00 0.00 2.74
90 91 6.294065 CGGACCCTTGTTATACATCTCTCTAC 60.294 46.154 0.00 0.00 0.00 2.59
91 92 5.768662 CGGACCCTTGTTATACATCTCTCTA 59.231 44.000 0.00 0.00 0.00 2.43
92 93 4.585162 CGGACCCTTGTTATACATCTCTCT 59.415 45.833 0.00 0.00 0.00 3.10
93 94 4.796618 GCGGACCCTTGTTATACATCTCTC 60.797 50.000 0.00 0.00 0.00 3.20
94 95 3.069729 GCGGACCCTTGTTATACATCTCT 59.930 47.826 0.00 0.00 0.00 3.10
95 96 3.391049 GCGGACCCTTGTTATACATCTC 58.609 50.000 0.00 0.00 0.00 2.75
96 97 2.104281 GGCGGACCCTTGTTATACATCT 59.896 50.000 0.00 0.00 0.00 2.90
97 98 2.490991 GGCGGACCCTTGTTATACATC 58.509 52.381 0.00 0.00 0.00 3.06
98 99 1.202604 CGGCGGACCCTTGTTATACAT 60.203 52.381 0.00 0.00 0.00 2.29
99 100 0.176219 CGGCGGACCCTTGTTATACA 59.824 55.000 0.00 0.00 0.00 2.29
100 101 0.461135 TCGGCGGACCCTTGTTATAC 59.539 55.000 7.21 0.00 0.00 1.47
108 109 0.974010 TGATTAAGTCGGCGGACCCT 60.974 55.000 19.68 10.67 44.54 4.34
113 114 4.868450 TTTTACATGATTAAGTCGGCGG 57.132 40.909 7.21 0.00 0.00 6.13
115 116 9.730420 ATGTTTATTTTACATGATTAAGTCGGC 57.270 29.630 0.00 0.00 35.03 5.54
152 153 9.355215 GAAGATTCTTTAACTGTCTGAATACGA 57.645 33.333 0.00 0.00 0.00 3.43
181 182 9.672673 TTTGGACAGAAAATGGTTGAAAAATTA 57.327 25.926 0.00 0.00 0.00 1.40
223 224 2.863853 TCGCCGTCGATCTACGTCG 61.864 63.158 15.80 15.80 44.67 5.12
237 238 3.723348 GCACAAACTCCCGTCGCC 61.723 66.667 0.00 0.00 0.00 5.54
241 242 1.525995 CACCTGCACAAACTCCCGT 60.526 57.895 0.00 0.00 0.00 5.28
243 244 2.908073 CGCACCTGCACAAACTCCC 61.908 63.158 0.00 0.00 42.21 4.30
265 266 0.247655 CATGACGGAAATTCGCACGG 60.248 55.000 0.00 0.00 0.00 4.94
267 268 3.063452 ACATACATGACGGAAATTCGCAC 59.937 43.478 0.00 0.00 0.00 5.34
279 280 9.632807 TGGCTTAAATAAACAAACATACATGAC 57.367 29.630 0.00 0.00 0.00 3.06
323 324 5.261209 AGCAGAACTCACATGATCTAGTC 57.739 43.478 0.00 0.00 0.00 2.59
324 325 5.674052 AAGCAGAACTCACATGATCTAGT 57.326 39.130 0.00 0.00 0.00 2.57
341 371 4.671377 TCAAAGTTTGCAGTGTTAAGCAG 58.329 39.130 10.90 0.00 42.39 4.24
342 372 4.710423 TCAAAGTTTGCAGTGTTAAGCA 57.290 36.364 10.90 0.00 39.32 3.91
343 373 4.027702 CGTTCAAAGTTTGCAGTGTTAAGC 60.028 41.667 10.90 0.00 0.00 3.09
344 374 5.092781 ACGTTCAAAGTTTGCAGTGTTAAG 58.907 37.500 10.90 0.00 0.00 1.85
351 396 5.741510 TCACATAAACGTTCAAAGTTTGCAG 59.258 36.000 11.26 6.94 41.33 4.41
354 399 7.056800 GCATTCACATAAACGTTCAAAGTTTG 58.943 34.615 11.26 9.44 41.33 2.93
386 431 7.290813 ACCCTCTTTCTCTTAGTTCAAAACAT 58.709 34.615 0.00 0.00 0.00 2.71
463 508 4.082026 GCAAACCTACCGACCTAAAGAGTA 60.082 45.833 0.00 0.00 0.00 2.59
467 512 1.997606 CGCAAACCTACCGACCTAAAG 59.002 52.381 0.00 0.00 0.00 1.85
471 516 0.037605 CTTCGCAAACCTACCGACCT 60.038 55.000 0.00 0.00 0.00 3.85
479 524 6.174720 TCTCCAATATATCTTCGCAAACCT 57.825 37.500 0.00 0.00 0.00 3.50
495 540 7.886629 TTTATATTCTGCAAGCTTCTCCAAT 57.113 32.000 0.00 0.00 0.00 3.16
530 575 6.437162 AGCCACCACTTTACATTTCATAACAT 59.563 34.615 0.00 0.00 0.00 2.71
535 580 4.666512 AGAGCCACCACTTTACATTTCAT 58.333 39.130 0.00 0.00 0.00 2.57
574 619 6.128849 CCATCCAGTTTTTAAAATCACAAGCG 60.129 38.462 10.76 0.00 0.00 4.68
606 651 8.621532 ACAATAGCTCTCACACATTCTAAAAA 57.378 30.769 0.00 0.00 0.00 1.94
613 658 4.083110 GCACAACAATAGCTCTCACACATT 60.083 41.667 0.00 0.00 0.00 2.71
685 730 8.759641 CAGATAAGATGTTGAGCAGTATGTTAC 58.240 37.037 0.00 0.00 39.31 2.50
828 2389 2.976185 TCCCCTACTGTGATTTGTCACA 59.024 45.455 10.46 10.46 46.95 3.58
829 2390 3.600388 CTCCCCTACTGTGATTTGTCAC 58.400 50.000 1.76 1.76 40.78 3.67
830 2391 2.571653 CCTCCCCTACTGTGATTTGTCA 59.428 50.000 0.00 0.00 0.00 3.58
831 2392 2.681097 GCCTCCCCTACTGTGATTTGTC 60.681 54.545 0.00 0.00 0.00 3.18
832 2393 1.282157 GCCTCCCCTACTGTGATTTGT 59.718 52.381 0.00 0.00 0.00 2.83
833 2394 1.561542 AGCCTCCCCTACTGTGATTTG 59.438 52.381 0.00 0.00 0.00 2.32
836 2397 0.399233 GGAGCCTCCCCTACTGTGAT 60.399 60.000 0.00 0.00 0.00 3.06
837 2398 1.001760 GGAGCCTCCCCTACTGTGA 59.998 63.158 0.00 0.00 0.00 3.58
838 2399 0.261991 TAGGAGCCTCCCCTACTGTG 59.738 60.000 7.26 0.00 37.19 3.66
839 2400 2.738168 TAGGAGCCTCCCCTACTGT 58.262 57.895 7.26 0.00 37.19 3.55
843 2404 1.781529 CAGTAGTAGGAGCCTCCCCTA 59.218 57.143 7.26 5.39 37.19 3.53
844 2405 0.558712 CAGTAGTAGGAGCCTCCCCT 59.441 60.000 7.26 6.45 37.19 4.79
845 2406 1.116536 GCAGTAGTAGGAGCCTCCCC 61.117 65.000 7.26 0.00 37.19 4.81
846 2407 0.105913 AGCAGTAGTAGGAGCCTCCC 60.106 60.000 7.26 0.00 37.19 4.30
847 2408 1.036707 CAGCAGTAGTAGGAGCCTCC 58.963 60.000 1.26 1.26 36.58 4.30
848 2409 1.953686 CTCAGCAGTAGTAGGAGCCTC 59.046 57.143 0.00 0.00 0.00 4.70
849 2410 1.566703 TCTCAGCAGTAGTAGGAGCCT 59.433 52.381 0.00 0.00 0.00 4.58
850 2411 1.953686 CTCTCAGCAGTAGTAGGAGCC 59.046 57.143 0.00 0.00 0.00 4.70
851 2412 1.953686 CCTCTCAGCAGTAGTAGGAGC 59.046 57.143 0.00 0.00 0.00 4.70
852 2413 1.953686 GCCTCTCAGCAGTAGTAGGAG 59.046 57.143 0.00 0.00 0.00 3.69
853 2414 1.566703 AGCCTCTCAGCAGTAGTAGGA 59.433 52.381 0.00 0.00 34.23 2.94
854 2415 2.065899 AGCCTCTCAGCAGTAGTAGG 57.934 55.000 0.00 0.00 34.23 3.18
855 2416 5.508825 CCATTTAGCCTCTCAGCAGTAGTAG 60.509 48.000 0.00 0.00 34.23 2.57
856 2417 4.342378 CCATTTAGCCTCTCAGCAGTAGTA 59.658 45.833 0.00 0.00 34.23 1.82
857 2418 3.133721 CCATTTAGCCTCTCAGCAGTAGT 59.866 47.826 0.00 0.00 34.23 2.73
858 2419 3.386078 TCCATTTAGCCTCTCAGCAGTAG 59.614 47.826 0.00 0.00 34.23 2.57
862 2423 3.044156 AGATCCATTTAGCCTCTCAGCA 58.956 45.455 0.00 0.00 34.23 4.41
924 2487 5.867903 AAATGGTGTGTGGAATTTCTTCA 57.132 34.783 0.00 0.00 32.70 3.02
1077 2667 2.552585 CTTCCCCGACTTCGCGCTTA 62.553 60.000 5.56 0.00 38.18 3.09
1143 2733 2.066999 GGTGGGGAGGAGCGAGATT 61.067 63.158 0.00 0.00 0.00 2.40
1636 3226 1.818785 GGACGACCTCCGAGACGAT 60.819 63.158 17.26 6.10 41.76 3.73
1804 3573 2.165030 GGGCATCCTCAACAATGACTTG 59.835 50.000 0.00 0.00 38.39 3.16
1925 3694 0.385390 AAGCTTGCCTTTGGTGAACG 59.615 50.000 0.00 0.00 0.00 3.95
1970 3739 5.703130 GGCATAACACAAAAATTAAAGGCCA 59.297 36.000 5.01 0.00 0.00 5.36
2276 8968 9.841295 GATTTGTAGTTAGTTTGGGATATGGTA 57.159 33.333 0.00 0.00 0.00 3.25
2305 8997 4.632153 CCCCAGTCCGATATAACTGAAAG 58.368 47.826 11.91 3.56 44.54 2.62
2597 9289 5.191426 TCCGTAGTAAGAGTCACAGCTAAT 58.809 41.667 0.00 0.00 0.00 1.73
2655 9347 2.109425 ATCAAAGGGACCGCTAACAC 57.891 50.000 0.00 0.00 0.00 3.32
2664 9356 4.950050 ACACGATGATCTATCAAAGGGAC 58.050 43.478 7.12 0.00 40.69 4.46
2729 9421 0.511221 AACCGTGAAATGAGAACGCG 59.489 50.000 3.53 3.53 36.02 6.01
2891 9586 4.891756 CCATTGTCTAAATTGGGAGAGCAT 59.108 41.667 0.00 0.00 0.00 3.79
2942 9637 2.747446 AGACCATACAAACGACAATGGC 59.253 45.455 0.00 0.00 42.21 4.40
2955 9650 5.698545 GCCACTCAGATCAATAAGACCATAC 59.301 44.000 0.00 0.00 0.00 2.39
3048 9752 6.239008 CCAAGAAAAAGTGCAGTTCCAATCTA 60.239 38.462 7.36 0.00 0.00 1.98
3113 9817 6.903883 ACCATACGTAACTGAAATGATCAC 57.096 37.500 0.00 0.00 33.47 3.06
3161 9865 5.656859 TGGGAAGTATCGCTGCTATATACAT 59.343 40.000 14.75 6.72 39.17 2.29
3169 9873 0.179000 CCTTGGGAAGTATCGCTGCT 59.821 55.000 0.00 0.00 39.17 4.24
3182 9886 1.048724 TCTCGCATCCTACCCTTGGG 61.049 60.000 3.77 3.77 0.00 4.12
3183 9887 0.105039 GTCTCGCATCCTACCCTTGG 59.895 60.000 0.00 0.00 0.00 3.61
3184 9888 0.249073 CGTCTCGCATCCTACCCTTG 60.249 60.000 0.00 0.00 0.00 3.61
3185 9889 1.392710 CCGTCTCGCATCCTACCCTT 61.393 60.000 0.00 0.00 0.00 3.95
3186 9890 1.828660 CCGTCTCGCATCCTACCCT 60.829 63.158 0.00 0.00 0.00 4.34
3187 9891 2.728817 CCGTCTCGCATCCTACCC 59.271 66.667 0.00 0.00 0.00 3.69
3227 9931 3.510360 CCTTCCTAAGCTATAGCCGCTTA 59.490 47.826 21.17 12.08 45.21 3.09
3252 9956 7.964666 TTTTCTTTGTTTCCTCCTTCCTTAA 57.035 32.000 0.00 0.00 0.00 1.85
3271 9979 2.878406 CCGACCACAAGTCACATTTTCT 59.122 45.455 0.00 0.00 46.69 2.52
3273 9981 1.953686 CCCGACCACAAGTCACATTTT 59.046 47.619 0.00 0.00 46.69 1.82
3319 10029 0.682852 CGCCGAAATATCTACCCCCA 59.317 55.000 0.00 0.00 0.00 4.96
3343 10053 6.060788 CCCTCCACATTTTGAAATTTTTGGA 58.939 36.000 0.00 9.31 32.46 3.53
3405 10116 1.335780 TGCAATGCACACAATCGTTCC 60.336 47.619 2.72 0.00 31.71 3.62
3481 10192 2.555892 GGACAGTACCCGGGGAAATTTT 60.556 50.000 27.92 3.63 0.00 1.82
3546 10257 5.120208 GTGTGATGTACGCTCTTTTATGTGT 59.880 40.000 0.00 0.00 36.85 3.72
3551 10262 5.808540 GGTATGTGTGATGTACGCTCTTTTA 59.191 40.000 0.00 0.00 40.47 1.52
3565 10276 5.538849 TTCAGTAAGTGTGGTATGTGTGA 57.461 39.130 0.00 0.00 0.00 3.58
3627 10338 5.125417 GCTGGTCTTTTATTGGAGCAATGTA 59.875 40.000 0.00 0.00 39.05 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.